Citrus Sinensis ID: 012949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEcccccccccccccHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHcccccccccHHHcHHHHHHHHHccccEEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHccccccEEccccccccHHHHHHHHHHHcccEEEEccccccccccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHHHcccccccccccccccccccEEcccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHcHccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHccHHHHEEHcccHHHHHHHHHHHHHHcccEEEEccHcccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHccc
Coil and Loop (DISEMBL)
mssleeplgldklpsmstidriqrfssnacrpsgdgmgmgscwiegsscstsnsydedydeytreafpwrrhtrdmshgdsfsrrtvslgrnhkmFGSACDiynsncndkdiRDITNKFLKGIPRFVKIVevgprdglqnekntvptgVKVELIRRLVSsglpvveatsfvspkwvpqlaDARDVMEAVRDLegarlpvltpNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEafsksnincsieDSLVRYRAVAHAAKVLSIPVRGYVSCvvgcpvegaippskVAYVAKELHdmgcfeislgdtigvgtpgtvvPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGistvdcsvaglggcpyakgasgnvaTEDVVYMLSGLGVETNVDLRKLMLagdfinkhlgrpsgskTAIALNRIAADASKI
Flexible Loop (DISEMBL)
mssleeplgldklpsmstiDRIQRfssnacrpsgdGMGMGSCWIEGSSCSTSNSYDEDYDEYTReafpwrrhtrdmshgdsfsrrtvslgrNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVevgprdglqnekntvptgvkVELIRRLVSSglpvveatsfvspkwvpqLADARDVMEAVRDLegarlpvltpNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINkhlgrpsgsktaiALNRIAADASKI
Low Complexity Region (SEG)
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQgfeaaiaagakevaifaSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Disordered region (IsUnstruct)
***************************************GSCWIE****************YTREAFPW******************SLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG*********************
Disordered Region (DISOPRED)
*****EP*GLDKLPSMSTIDRI*******************CW************************PW****************************************************GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIA******
Disordered Region (DISEMBL)
********GLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGS************DEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Disordered Region (DISPRO)
*******LGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
O81027	468	Hydroxymethylglutaryl-CoA	yes	no	0.940	0.908	0.695	1e-179
P97519	325	Hydroxymethylglutaryl-CoA	yes	no	0.681	0.947	0.577	1e-107
P38060	325	Hydroxymethylglutaryl-CoA	yes	no	0.681	0.947	0.574	1e-106
P35915	298	Hydroxymethylglutaryl-CoA	yes	no	0.657	0.996	0.603	1e-106
Q29448	325	Hydroxymethylglutaryl-CoA	yes	no	0.681	0.947	0.577	1e-105
Q5R9E1	325	Hydroxymethylglutaryl-CoA	yes	no	0.683	0.950	0.570	1e-105
Q8JZS7	343	3-hydroxymethyl-3-methylg	no	no	0.654	0.862	0.580	1e-105
Q8HXZ6	325	Hydroxymethylglutaryl-CoA	N/A	no	0.681	0.947	0.568	1e-104
P35914	325	Hydroxymethylglutaryl-CoA	yes	no	0.683	0.950	0.564	1e-104
Q8TB92	370	3-hydroxymethyl-3-methylg	no	no	0.654	0.8	0.574	1e-104

>sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2

 Score =  628 bits (1620), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/460 (69%), Positives = 362/460 (78%), Gaps = 35/460 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+TSNS  +D  
Sbjct: 36  MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 94

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
            + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+    
Sbjct: 95  SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 154

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct: 155 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 214

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVM+AV  L+GARLPVLTPNLK                          GF
Sbjct: 215 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLK--------------------------GF 248

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           +AA++AGAKEVAIFASASE+FS SNINC+IE+SL+RYR VA AAK  S+PVRGYVSCVVG
Sbjct: 249 QAAVSAGAKEVAIFASASESFSLSNINCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVG 308

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEG + PSKVAYV KEL+DMGCFEISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH
Sbjct: 309 CPVEGPVLPSKVAYVVKELYDMGCFEISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVH 368

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQ+L NIL+SLQMGIS VD S+AGLGGCPYAKGASGNVATEDVVYML+GLGV TN
Sbjct: 369 FHDTYGQALANILVSLQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTN 428

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALN-RIAADASKI 452
           VDL KL+ AGDFI+KHLGRP+GSK A+ALN RI ADASKI
Sbjct: 429 VDLGKLIAAGDFISKHLGRPNGSKAAVALNRRITADASKI 468

Involved in the catabolism of branched amino acids such as leucine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 4

>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 241/334 (72%), Gaps = 26/334 (7%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R  +   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK++LI  L  +GLPV+EATSFV
Sbjct: 18  LRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SPKWVPQ+AD  DV++ ++   G   PVLTPN+K                          
Sbjct: 78  SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMK-------------------------- 111

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
           GFE A+AAGAKEV+IF +ASE F++ N+NCSIE+S  R+  V  AA+  SI VRGYVSC 
Sbjct: 112 GFEEAVAAGAKEVSIFGAASELFTRKNVNCSIEESFQRFDGVMQAARAASISVRGYVSCA 171

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           +GCP EG + P+KVA VAK+L+ MGC+EISLGDTIGVGTPG +  ML AV+  VPV  LA
Sbjct: 172 LGCPYEGKVSPAKVAEVAKKLYSMGCYEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALA 231

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ 
Sbjct: 232 VHCHDTYGQALANTLVALQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIH 291

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
           T V+L+KL+ AGDFI + L R + SK A A  ++
Sbjct: 292 TGVNLQKLLEAGDFICQALNRKTSSKVAQATCKL 325

Key enzyme in ketone body formation (ketogenesis). Terminal step in leucine catabolism.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2

 Score =  387 bits (993), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/334 (57%), Positives = 239/334 (71%), Gaps = 26/334 (7%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R ++   +  +P+ VKIVEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFV
Sbjct: 18  LRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SPKWVPQ+AD  DV++ ++   G   PVLTPN+K                          
Sbjct: 78  SPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMK-------------------------- 111

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
           GFE A+AAGAKEV++F + SE F++ N NCSIE+S  R+  V  AA+  SI VRGYVSC 
Sbjct: 112 GFEEAVAAGAKEVSVFGAVSELFTRKNANCSIEESFQRFAGVMQAAQAASISVRGYVSCA 171

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           +GCP EG + P+KVA VAK+L+ MGC+EISLGDTIGVGTPG +  ML AVM  VPV  LA
Sbjct: 172 LGCPYEGKVSPAKVAEVAKKLYSMGCYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALA 231

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ 
Sbjct: 232 VHCHDTYGQALANTLVALQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIH 291

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
           T V+L+KL+ AGDFI + L R + SK A A  ++
Sbjct: 292 TGVNLQKLLEAGDFICQALNRKTSSKVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1

 Score =  386 bits (992), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/323 (60%), Positives = 237/323 (73%), Gaps = 26/323 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
            P+ VK+VEVGPRDGLQNEK+ VPT VK+ LI  L  +GLPV+EATSFVSP+WVPQ+AD 
Sbjct: 2   FPQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADH 61

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
            +VM+ +  L G   PVLTPNLK                          GF+AA+AAGAK
Sbjct: 62  AEVMQGINKLPGVSYPVLTPNLK--------------------------GFQAAVAAGAK 95

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           EV+IF +ASE F+K NINCSIE+SL R+  V +AA+  SIPVRGYVSCV+GCP EG I  
Sbjct: 96  EVSIFGAASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCPYEGNISA 155

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
           +KVA V+K+++ MGC+EISLGD IG+GTPG++  ML AVM  VPV  LAVH HDTYGQ+L
Sbjct: 156 AKVAEVSKKMYSMGCYEISLGDRIGIGTPGSMKEMLAAVMKEVPVGALAVHCHDTYGQAL 215

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            NIL++LQMG+S VD SVAGLGGCPYA+GASGNVATED+VYML+GLG+ T VDL+KLM  
Sbjct: 216 ANILVALQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVDLQKLMDT 275

Query: 423 GDFINKHLGRPSGSKTAIALNRI 445
           G FI   L R + SK + A  R+
Sbjct: 276 GTFICNALNRRTNSKVSQAACRL 298

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2

 Score =  383 bits (984), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 239/334 (71%), Gaps = 26/334 (7%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R ++   +   P+ VKIVEVGPRDGLQNEKN VPT VK++LI  L  +GLPVVEATSFV
Sbjct: 18  LRAVSTSSVGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SPKWVPQ+AD  +V++ ++   G   PVLTPN K                          
Sbjct: 78  SPKWVPQMADHAEVLKGIQKFPGVNYPVLTPNFK-------------------------- 111

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
           GF+AA+AAGAKEVAIF +ASE F+K NINCSI++SL R+  +  AA+   I VRGYVSCV
Sbjct: 112 GFQAAVAAGAKEVAIFGAASELFTKKNINCSIDESLQRFDEILKAARAAGISVRGYVSCV 171

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           +GCP EG I P+KVA V K+L+ MGC+EISLGDTIGVGTPG +  ML AV+  VPV  LA
Sbjct: 172 LGCPYEGKISPAKVAEVTKKLYSMGCYEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALA 231

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQ+L N L +LQMG+S +D SVAGLGGCPYA+GASGN+ATED+VYML+GLG+ 
Sbjct: 232 VHCHDTYGQALANTLTALQMGVSVMDSSVAGLGGCPYAQGASGNLATEDLVYMLAGLGIH 291

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
           T V+L+KL+ AG FI + L R + SK A A  ++
Sbjct: 292 TGVNLQKLLEAGAFICQALNRRTNSKVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1

 Score =  381 bits (979), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/335 (57%), Positives = 238/335 (71%), Gaps = 26/335 (7%)

Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230
           VSPKWVPQ+ D  +V++ ++   G   PVLTPNLK                         
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLK------------------------- 111

Query: 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 290
            GFEAA+AAGAKEVAIF +ASE F+K NINCSIE+S  R+ A+  AA+  +I VRGYVSC
Sbjct: 112 -GFEAAVAAGAKEVAIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSC 170

Query: 291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL 350
            +GCP EG I P+KVA V K+L+ MGC+EISLGDTIGVGTPG +  ML AVM  VP+  L
Sbjct: 171 ALGCPYEGKISPAKVAEVTKKLYSMGCYEISLGDTIGVGTPGIMKGMLSAVMQEVPLAAL 230

Query: 351 AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410
           AVH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+
Sbjct: 231 AVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGI 290

Query: 411 ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
            T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 291 HTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/322 (58%), Positives = 235/322 (72%), Gaps = 26/322 (8%)

Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
           L G+P +VKIVEVGPRDGLQNEK  VPT +K+ELI +L  +GL V+E TSFVS +WVPQ+
Sbjct: 41  LPGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWVPQM 100

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA 239
           AD  +VM  +R   G R PVLTPNL                          QGF+ A+AA
Sbjct: 101 ADHAEVMRGIRQYPGVRYPVLTPNL--------------------------QGFQHAVAA 134

Query: 240 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299
           GA E+A+F +ASE+FSK NINCSIE+S+ R++ V  +A+ + IPVRGYVSC +GCP EG+
Sbjct: 135 GATEIAVFGAASESFSKKNINCSIEESMGRFQEVISSARHMDIPVRGYVSCALGCPYEGS 194

Query: 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 359
           I P KV  V+K L+ MGC+EISLGDTIGVGTPG++  MLE+VM  +P   LAVH HDTYG
Sbjct: 195 ITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYG 254

Query: 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           Q+L NIL +LQMGI+ VD +V+GLGGCPYAKGASGNVATED++YML+G+G+ T VDL K+
Sbjct: 255 QALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKV 314

Query: 420 MLAGDFINKHLGRPSGSKTAIA 441
           M AG+FI K + + + SK A A
Sbjct: 315 MEAGEFICKAVNKTTNSKVAQA 336

Involved in the catabolism of branched amino acids such as leucine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1

 Score =  379 bits (973), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 190/334 (56%), Positives = 238/334 (71%), Gaps = 26/334 (7%)

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+EATSFV
Sbjct: 18  LRAVSTSSMDTLPKQVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIEATSFV 77

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SPKWVPQ+AD  +V++ ++   G   PVL PNLK                          
Sbjct: 78  SPKWVPQMADHAEVLKGIQKFPGITYPVLIPNLK-------------------------- 111

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
           GFEAA+AAGAKEV+IF +ASE F+K N+NCSIE+S  R+ A+  AA+  +I VRGYVSCV
Sbjct: 112 GFEAAVAAGAKEVSIFGAASELFTKKNVNCSIEESFQRFDAILKAAQSANISVRGYVSCV 171

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           +GCP EG I P+KVA V K+ + MGC+EISLGDTIGVGTPG +  ML AVM  VP   LA
Sbjct: 172 LGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPPAALA 231

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+ 
Sbjct: 232 VHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIH 291

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
           T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 292 TGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Macaca fascicularis (taxid: 9541)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2

 Score =  378 bits (971), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/335 (56%), Positives = 236/335 (70%), Gaps = 26/335 (7%)

Query: 111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF 170
            +R ++   +  +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 171 VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL 230
           VSPKWVPQ+ D  +V++ ++   G   PVLTPNLK                         
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLK------------------------- 111

Query: 231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC 290
            GFEAA+AAGAKEV IF +ASE F+K NINCSIE+S  R+ A+  AA+  +I VRGYVSC
Sbjct: 112 -GFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSC 170

Query: 291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL 350
            +GCP EG I P+KVA V K+ + MGC+EISLGDTIGVGTPG +  ML AVM  VP+  L
Sbjct: 171 ALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAAL 230

Query: 351 AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV 410
           AVH HDTYGQ+L N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+
Sbjct: 231 AVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGI 290

Query: 411 ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI 445
            T V+L+KL+ AG+FI + L R + SK A A  ++
Sbjct: 291 HTGVNLQKLLEAGNFICQALNRKTSSKVAQATCKL 325

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 232/322 (72%), Gaps = 26/322 (8%)

Query: 120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL 179
           L G+P FVKIVEVGPRDGLQNEK  VPT +K+E I RL  +GL V+E TSFVS +WVPQ+
Sbjct: 71  LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQM 130

Query: 180 ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA 239
           AD  +VM+ +    G R PVLTPNL                          QGF  A+AA
Sbjct: 131 ADHTEVMKGIHQYPGVRYPVLTPNL--------------------------QGFHHAVAA 164

Query: 240 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA 299
           GA E+++F +ASE+FSK NINCSIE+S+ ++  V  +A+ ++IP RGYVSC +GCP EG+
Sbjct: 165 GATEISVFGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGS 224

Query: 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 359
           I P KV  V+K L+ MGC+EISLGDTIGVGTPG++  MLE+VM  +P   LAVH HDTYG
Sbjct: 225 ITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYG 284

Query: 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           Q+L NIL +LQMGI+ VD +V+GLGGCPYAKGASGNVATED++YML+GLG+ T V+L K+
Sbjct: 285 QALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKV 344

Query: 420 MLAGDFINKHLGRPSGSKTAIA 441
           M AGDFI K + + + SK A A
Sbjct: 345 MEAGDFICKAVNKTTNSKVAQA 366

Involved in the catabolism of branched amino acids such as leucine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
225435868	432	PREDICTED: hydroxymethylglutaryl-CoA lya	0.940	0.983	0.760	0.0
356521713	433	PREDICTED: hydroxymethylglutaryl-CoA lya	0.942	0.983	0.753	0.0
224105993	429	predicted protein [Populus trichocarpa]	0.933	0.983	0.764	0.0
356574064	435	PREDICTED: hydroxymethylglutaryl-CoA lya	0.942	0.979	0.737	0.0
357458799	433	Hydroxymethylglutaryl-CoA lyase [Medicag	0.942	0.983	0.725	0.0
356499297	433	PREDICTED: hydroxymethylglutaryl-CoA lya	0.942	0.983	0.724	0.0
356554185	433	PREDICTED: hydroxymethylglutaryl-CoA lya	0.942	0.983	0.730	0.0
84453198	433	putative hydroxymethylglutaryl-CoA lyase	0.942	0.983	0.718	0.0
449444847	432	PREDICTED: hydroxymethylglutaryl-CoA lya	0.935	0.979	0.720	0.0
30683260	433	Hydroxymethylglutaryl-CoA lyase [Arabido	0.940	0.981	0.695	1e-178

>gi|225435868|ref|XP_002263865.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera] gi|296083893|emb|CBI24281.3| unnamed protein product [Vitis vinifera]

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/459 (76%), Positives = 383/459 (83%), Gaps = 34/459 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLD L S+STID +QRFSSNACRP  + MGMGSCWI+G +CS+SN+ +EDY+
Sbjct: 1   MSSLEEPLGLDNLSSLSTID-LQRFSSNACRPRAEDMGMGSCWIDGRTCSSSNNCNEDYE 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNSN-------CNDKDIR 113
            YTREAF W+R TR+ S GDS  RRT S GR+  ++GS+CD + S+       CN+K +R
Sbjct: 60  GYTREAFQWKRQTRETSQGDSLKRRTSSQGRSCMVYGSSCDSWYSSDHQYGFQCNNKGVR 119

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            + NKFL GIP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVS GLPVVEATSFVSP
Sbjct: 120 GMANKFLGGIPKFVKIVEVGPRDGLQNEKNIVPTAVKVELIHRLVSCGLPVVEATSFVSP 179

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVMEAVR+LEGARLPVLTPNLK                          GF
Sbjct: 180 KWVPQLADAKDVMEAVRNLEGARLPVLTPNLK--------------------------GF 213

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           EAAIAAGAKEVAIFASASE+FSKSNINCSIE+SL RYRAVA AAK LSIPVRGYVSCVVG
Sbjct: 214 EAAIAAGAKEVAIFASASESFSKSNINCSIEESLTRYRAVALAAKKLSIPVRGYVSCVVG 273

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEGAI PSKVAYVAKEL+DMGCFEISLGDTIGV TPG +VPMLEAVMAVVPVEKLAVH
Sbjct: 274 CPVEGAISPSKVAYVAKELYDMGCFEISLGDTIGVATPGAIVPMLEAVMAVVPVEKLAVH 333

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQSLPNIL+SLQMGIST+D SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+TN
Sbjct: 334 FHDTYGQSLPNILLSLQMGISTIDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTN 393

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           VDL KLML GDFI+  LGRPSGSKTAIAL+R+  DASKI
Sbjct: 394 VDLGKLMLVGDFISNRLGRPSGSKTAIALSRVNVDASKI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521713|ref|XP_003529496.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  692 bits (1787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/459 (75%), Positives = 380/459 (82%), Gaps = 33/459 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM TIDRIQRFSS ACRP  D +GMG+CWIEG SCSTSNS DED +
Sbjct: 1   MSSLEEPLGLDKLPSMCTIDRIQRFSSAACRPRVDNLGMGNCWIEGRSCSTSNSCDEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG------SACDI-YNSNCNDKDIR 113
           EYT E FPWRR TRD+S GDSFS++T+++GRN   FG       A D  Y+   N+K+++
Sbjct: 61  EYTAETFPWRRQTRDLSRGDSFSQKTMTMGRNSMKFGMIDNSFYASDYQYSPQSNNKNVQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  KF+KGIP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL SSGL V+EATSFVSP
Sbjct: 121 DMPYKFMKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLK                          GF
Sbjct: 181 KWVPQLADAKDVMQAVHNLGGIRLPVLTPNLK--------------------------GF 214

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           EAAIAAGA+EVA+FASASE+FSKSNINCSIE+SLVRYRAV HAAK LSIPVRGYVSCVVG
Sbjct: 215 EAAIAAGAREVAVFASASESFSKSNINCSIEESLVRYRAVTHAAKELSIPVRGYVSCVVG 274

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEG IPPS+VAYVAKEL+DMGCFEISLGDTIGVGTPGTVVPML AVMAVVP EKLAVH
Sbjct: 275 CPVEGPIPPSRVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPAEKLAVH 334

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQSL NIL+SLQMGIS VD SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+TN
Sbjct: 335 FHDTYGQSLANILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTN 394

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           VDL KLM AG+FI KHLGRPSGSKT IA +R+ ADASKI
Sbjct: 395 VDLGKLMSAGEFIGKHLGRPSGSKTTIAFSRVTADASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105993|ref|XP_002314006.1| predicted protein [Populus trichocarpa] gi|222850414|gb|EEE87961.1| predicted protein [Populus trichocarpa]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/459 (76%), Positives = 378/459 (82%), Gaps = 37/459 (8%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSM+TI+RIQRFSS ACRP  D +GMG CWIEG  CS+SNS +EDY 
Sbjct: 1   MSSLEEPLGFDKLPSMNTIERIQRFSSGACRPRADDIGMGHCWIEGRICSSSNSCEEDY- 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
           EYTRE FPW+RHTRD   G+   RRT+S G  + + GS+CD        Y+S  NDKDIR
Sbjct: 60  EYTRETFPWKRHTRDPCQGN---RRTMSSGSKNVVSGSSCDSRYFPDHQYSSKSNDKDIR 116

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           DITNKFLKGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVSSGLPVVEATSFVSP
Sbjct: 117 DITNKFLKGIPKFVKIVEVGPRDGLQNEKNIVPTDVKVELIHRLVSSGLPVVEATSFVSP 176

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADARDVMEAV  LE +RLPVLTPNLK                          GF
Sbjct: 177 KWVPQLADARDVMEAVHGLEASRLPVLTPNLK--------------------------GF 210

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           EAA+AAGAKEVA+FASASE+FSKSNINCSI++SL RYRAV HAAK LSIPVRGYVSCV+G
Sbjct: 211 EAAVAAGAKEVAVFASASESFSKSNINCSIKESLARYRAVTHAAKELSIPVRGYVSCVIG 270

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CP EG+I PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV  MLEAVMAVVPVEKLA+H
Sbjct: 271 CPEEGSIHPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVALMLEAVMAVVPVEKLAIH 330

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQSLPNIL+SLQMGIS VD SVAGLGGCPYAKGASGNVATEDVVYML GLGV TN
Sbjct: 331 FHDTYGQSLPNILVSLQMGISVVDSSVAGLGGCPYAKGASGNVATEDVVYMLHGLGVRTN 390

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           VDL KL+ AGDFI K LGRPSGSKTA+AL+R+ ADASKI
Sbjct: 391 VDLAKLLSAGDFICKQLGRPSGSKTAVALSRVTADASKI 429

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574064|ref|XP_003555172.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  680 bits (1755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/461 (73%), Positives = 379/461 (82%), Gaps = 35/461 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDG--MGMGSCWIEGSSCSTSNSYDED 58
           MSSLEEPLGLDKLPSMSTIDRIQRFSS AC P  D   +G+G+CWIEG SCSTSNS +ED
Sbjct: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSAACCPRVDNFNLGLGNCWIEGRSCSTSNSCNED 60

Query: 59  YDEYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG-------SACDIYNSNCNDKD 111
            +EYT E FPWRR  RD+S GD+FS++++++GRN   FG       ++   Y+   N+ +
Sbjct: 61  SEEYTEETFPWRRQRRDLSRGDTFSQKSMTMGRNSMKFGMIDNSFYTSDYQYSPQNNNNN 120

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           ++D+  KF+KGIP FVKIVEVGPRDGLQNEKN VPT VK+ELI RL SSGL V+EATSFV
Sbjct: 121 VQDMAYKFMKGIPNFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFV 180

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SPKWVPQLADA+DVM+AV +L G RLPVLTPNLK                          
Sbjct: 181 SPKWVPQLADAKDVMQAVHNLGGIRLPVLTPNLK-------------------------- 214

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
           GFEAAIAAGA+EVA+FASASE+FSKSNINCSIE+SLVRYRAV  AAK LSIPVRGYVSCV
Sbjct: 215 GFEAAIAAGAREVAVFASASESFSKSNINCSIEESLVRYRAVTRAAKQLSIPVRGYVSCV 274

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           VGCPVEG IPPSKVAYVAKEL+DMGCFEISLGDTIGVGTPGTVVPML AVMAVVP EKLA
Sbjct: 275 VGCPVEGPIPPSKVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPAEKLA 334

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQSLPNIL+SLQMGIS VD SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+
Sbjct: 335 VHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVK 394

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           TNVDL KLMLAG+FI KHLGRPSGSKTA+A +R+ ADASKI
Sbjct: 395 TNVDLGKLMLAGEFIGKHLGRPSGSKTAVAFSRVTADASKI 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458799|ref|XP_003599680.1| Hydroxymethylglutaryl-CoA lyase [Medicago truncatula] gi|355488728|gb|AES69931.1| Hydroxymethylglutaryl-CoA lyase [Medicago truncatula]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/459 (72%), Positives = 374/459 (81%), Gaps = 33/459 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSMST+DR+QRFSS  CRP  D +GMG+C+IEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGHDKLPSMSTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCNEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRN-------HKMFGSACDIYNSNCNDKDIR 113
           +YT E +PW+R TRDMS GDSFS RT++ GRN          F ++   Y+   N+KD++
Sbjct: 61  DYTAETYPWKRQTRDMSRGDSFSPRTMTTGRNTLKSGIVDNSFYTSDYQYSQKRNNKDMQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  KF+KG+P FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSP
Sbjct: 121 DMAYKFMKGMPEFVKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASTGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLK                          GF
Sbjct: 181 KWVPQLADAKDVMQAVHNLRGIRLPVLTPNLK--------------------------GF 214

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           EAA+AAGA+EVA+FASASE+FSKSNINCSIE+SL RYRAV  AAK LSIPVRGYVSCVVG
Sbjct: 215 EAAVAAGAREVAVFASASESFSKSNINCSIEESLSRYRAVTRAAKELSIPVRGYVSCVVG 274

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEG +PPSKVAYVAK L+DMGCFEISLGDTIGVGTPGTVVPML AVMA+VP EKLAVH
Sbjct: 275 CPVEGPVPPSKVAYVAKALYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAIVPTEKLAVH 334

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQSLPNIL+SLQMGIS VD SVAGLGGCPYAKGASGNVATEDVVYML+GLG++TN
Sbjct: 335 FHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTN 394

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           VD+ KLM AGDFI K LGRPSGSKTAIALNR+ ADASKI
Sbjct: 395 VDIGKLMSAGDFIGKQLGRPSGSKTAIALNRVTADASKI 433

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499297|ref|XP_003518478.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/457 (72%), Positives = 377/457 (82%), Gaps = 31/457 (6%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM+TIDRIQRFSS +CRP  D +GMG+CWIEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGLDKLPSMNTIDRIQRFSSGSCRPRVDNLGMGNCWIEGRSCSTSNSCNEDDE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACDIYNS-----NCNDKDIRDI 115
           EYT E FPW+R TRD+S  DSFS++T+  GR    FG   D ++       C+ KD++ +
Sbjct: 61  EYTAETFPWKRQTRDLSPDDSFSQKTLIKGRKSMKFGMIDDSFSDCQTSPKCHTKDLQGL 120

Query: 116 TNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW 175
             K+L  IP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSPKW
Sbjct: 121 AYKYLNSIPKFVKIVEVGPRDGLQNEKNIVPTAVKIELIHRLASTGLSVIEATSFVSPKW 180

Query: 176 VPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEA 235
           VPQLADA+DVM+AV +L G RLPVLTPNLK                          GFEA
Sbjct: 181 VPQLADAKDVMQAVHNLRGIRLPVLTPNLK--------------------------GFEA 214

Query: 236 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295
           AIAAGA+EVAIFASASE+FSKSNINCSIE+SL+R++AV HAAK LSIPVRGYVSCV GCP
Sbjct: 215 AIAAGAREVAIFASASESFSKSNINCSIEESLIRFQAVTHAAKQLSIPVRGYVSCVAGCP 274

Query: 296 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 355
           VEG IPPSKVAYVAKEL+DMGCFEISLGDTIGVGTPGTVVPML AVMAVVP++K+AVH H
Sbjct: 275 VEGPIPPSKVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPIDKIAVHFH 334

Query: 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 415
           DTYGQSLPNIL+SLQMGISTVD SVAGLGGCPYAKGASGNVATEDVVYML+GLG++T+VD
Sbjct: 335 DTYGQSLPNILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGIKTDVD 394

Query: 416 LRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           L KL+LAG+FI+ HLGRPS SKTAIALNR+ ++ASKI
Sbjct: 395 LGKLILAGEFISNHLGRPSTSKTAIALNRVTSNASKI 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554185|ref|XP_003545429.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/457 (73%), Positives = 377/457 (82%), Gaps = 31/457 (6%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSM+TIDRIQRFSS +CRP  D +GMG+CWIEG SCSTSNS +ED +
Sbjct: 1   MSSLEEPLGLDKLPSMNTIDRIQRFSSGSCRPRVDNLGMGNCWIEGRSCSTSNSCNEDDE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG----SACDIYNS-NCNDKDIRDI 115
           EYT E FPW+  TRD+S  DSFS+++++ GR    FG    S  D  +S  C+ KD++ +
Sbjct: 61  EYTAETFPWKIQTRDLSQDDSFSQKSLTKGRRSMKFGMIDDSISDCQSSPKCHTKDMQGL 120

Query: 116 TNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW 175
             KFL  IP+FVKIVEVGPRDGLQNEKN VPT VK+ELI RL S+GL V+EATSFVSPKW
Sbjct: 121 AYKFLNSIPKFVKIVEVGPRDGLQNEKNIVPTSVKIELIHRLASTGLSVIEATSFVSPKW 180

Query: 176 VPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEA 235
           VPQLADA+DVM+AV +L G RLPVLTPNLK                          GFEA
Sbjct: 181 VPQLADAKDVMQAVHNLRGIRLPVLTPNLK--------------------------GFEA 214

Query: 236 AIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP 295
           A+A+GA+EVAIFASASE+FSKSNINCSIE+SL+R+RAV  AAK LSIPVRGYVSCV GCP
Sbjct: 215 AMASGAREVAIFASASESFSKSNINCSIEESLIRFRAVTRAAKQLSIPVRGYVSCVAGCP 274

Query: 296 VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH 355
           VEG IPPSKVAYVAKEL+DMGCFEISLGDTIGVGTPGTVVPML AVMAVVP++K+AVH H
Sbjct: 275 VEGPIPPSKVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPIDKIAVHFH 334

Query: 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 415
           DTYGQSLPNIL+SLQMGISTVD SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+TNVD
Sbjct: 335 DTYGQSLPNILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVD 394

Query: 416 LRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           L KLMLAGDFI+ HLGRPS SKTAIALNR+ ++ASKI
Sbjct: 395 LGKLMLAGDFISNHLGRPSTSKTAIALNRVTSNASKI 431

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84453198|dbj|BAE71196.1| putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense]

 Score =  662 bits (1707), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/459 (71%), Positives = 370/459 (80%), Gaps = 33/459 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLG DKLPSM+T+DR+QRFSS  CRP  D +GMG+C+IEG SCSTSNS  ED +
Sbjct: 1   MSSLEEPLGFDKLPSMNTMDRVQRFSSGCCRPQVDNLGMGNCFIEGRSCSTSNSCSEDNE 60

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFG-------SACDIYNSNCNDKDIR 113
            YT E +PW+R TRDMS  DSFS++T   GRN   FG       ++   Y+   N+KD++
Sbjct: 61  GYTAETYPWKRQTRDMSRRDSFSQKTTIKGRNSMKFGIVDNSFYTSDYQYSQKPNNKDMQ 120

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
           D+  K +KG+P FVKIVEVGPRDGLQNEKN V T VK+ELI RL S+GL V+EATSFVSP
Sbjct: 121 DMAYKVMKGMPGFVKIVEVGPRDGLQNEKNMVSTDVKIELIHRLASTGLSVIEATSFVSP 180

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVM+AV +L G RLPVLTPNLK                          GF
Sbjct: 181 KWVPQLADAKDVMKAVHNLGGIRLPVLTPNLK--------------------------GF 214

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           EAAIAAGA+EVA+FASASE+FSKSNINCSIE+SL RYRAV  AAK LSIPVRGYVSCVVG
Sbjct: 215 EAAIAAGAREVAVFASASESFSKSNINCSIEESLARYRAVTSAAKALSIPVRGYVSCVVG 274

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEG++ PSKVAYVAKEL+DMGCFEISLGDTIGVGTPGTVVPML AVMAVVP EKLAVH
Sbjct: 275 CPVEGSVSPSKVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLAVMAVVPTEKLAVH 334

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQSL NIL+SLQMGIS VD SVAGLGGCPYAKGASGNVATEDVVYML+GLGV+TN
Sbjct: 335 FHDTYGQSLSNILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVKTN 394

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           VD+ KLM AGDFI KHLGRPSGSKTAIAL+R+ AD+SKI
Sbjct: 395 VDIEKLMSAGDFIGKHLGRPSGSKTAIALSRVTADSSKI 433

Source: Trifolium pratense

Species: Trifolium pratense

Genus: Trifolium

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444847|ref|XP_004140185.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cucumis sativus] gi|449481007|ref|XP_004156054.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cucumis sativus]

 Score =  648 bits (1672), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/461 (72%), Positives = 367/461 (79%), Gaps = 38/461 (8%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPLGLDKLPSMSTIDRIQRFSS+ACRP GD MGMG CWI+G   S+SNS  E YD
Sbjct: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSSACRPIGDDMGMGICWIQGGRSSSSNSCKE-YD 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSA--CDI-------YNSNCNDKD 111
           E   + FPWRRH ++ S     +RRT S G   K+F S   C+        Y +     +
Sbjct: 60  ENGGDTFPWRRHRKNTSQNGFVNRRTTSAGS--KIFASENFCESHCSPGHEYKTKSTSDN 117

Query: 112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV 171
           I+ +TNKFLK IP+FVKIVEVGPRDGLQNEKN VPT VKVELI RLVSSGLPVVEATSFV
Sbjct: 118 IQHMTNKFLKDIPKFVKIVEVGPRDGLQNEKNMVPTSVKVELIHRLVSSGLPVVEATSFV 177

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           SP  VPQL+DA +VMEAVR+LEGARLPVLTPNLK                          
Sbjct: 178 SPTRVPQLSDAAEVMEAVRNLEGARLPVLTPNLK-------------------------- 211

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
            F AAIAAGAKEVA+FASASE+FSK+NINCSIE+SL RYRAV  AAK L+IPVRGYVSCV
Sbjct: 212 SFRAAIAAGAKEVAVFASASESFSKANINCSIEESLDRYRAVTSAAKELAIPVRGYVSCV 271

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
           VGCP EGA+ PS VAYVAKEL++MGCFEISLGDTIGV TPGTVVPMLEAVM VVPV+KLA
Sbjct: 272 VGCPTEGAVSPSNVAYVAKELYEMGCFEISLGDTIGVATPGTVVPMLEAVMGVVPVDKLA 331

Query: 352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE 411
           VH HDTYGQSLPNILISLQMGIST+D SVAGLGGCPYAKGA+GNVATEDVVYML GLG++
Sbjct: 332 VHFHDTYGQSLPNILISLQMGISTIDSSVAGLGGCPYAKGATGNVATEDVVYMLHGLGIK 391

Query: 412 TNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAADASKI 452
           TNVDL K+M AG+FIN HLGRPSGSKTAIALNR+AAD+SK+
Sbjct: 392 TNVDLAKVMSAGNFINNHLGRPSGSKTAIALNRVAADSSKM 432

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683260|ref|NP_850087.1| Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|22136060|gb|AAM91612.1| putative hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|23197746|gb|AAN15400.1| putative hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana] gi|330252794|gb|AEC07888.1| Hydroxymethylglutaryl-CoA lyase [Arabidopsis thaliana]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 320/460 (69%), Positives = 362/460 (78%), Gaps = 35/460 (7%)

Query: 1   MSSLEEPLGLDKLPSMSTIDRIQRFSSNACRPSGDGMGMGSCWIEGSSCSTSNSYDEDYD 60
           MSSLEEPL  DKLPSMST+DRIQRFSS ACRP  D +GMG  WIEG  C+TSNS  +D  
Sbjct: 1   MSSLEEPLSFDKLPSMSTMDRIQRFSSGACRPRDD-VGMGHRWIEGRDCTTSNSCIDDDK 59

Query: 61  EYTREAFPWRRHTRDMSHGDSFSRRTVSLGRNHKMFGSACD-------IYNSNCNDKDIR 113
            + +E+FPWRRHTR +S G+   R     GR   + G+  +        Y++  N+    
Sbjct: 60  SFAKESFPWRRHTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTS 119

Query: 114 DITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP 173
            I+NK  KGIP+FVKIVEVGPRDGLQNEKN VPT VKVELI+RLVSSGLPVVEATSFVSP
Sbjct: 120 HISNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSP 179

Query: 174 KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF 233
           KWVPQLADA+DVM+AV  L+GARLPVLTPNLK                          GF
Sbjct: 180 KWVPQLADAKDVMDAVNTLDGARLPVLTPNLK--------------------------GF 213

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG 293
           +AA++AGAKEVAIFASASE+FS SNINC+IE+SL+RYR VA AAK  S+PVRGYVSCVVG
Sbjct: 214 QAAVSAGAKEVAIFASASESFSLSNINCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVG 273

Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH 353
           CPVEG + PSKVAYV KEL+DMGCFEISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH
Sbjct: 274 CPVEGPVLPSKVAYVVKELYDMGCFEISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVH 333

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            HDTYGQ+L NIL+SLQMGIS VD S+AGLGGCPYAKGASGNVATEDVVYML+GLGV TN
Sbjct: 334 FHDTYGQALANILVSLQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTN 393

Query: 414 VDLRKLMLAGDFINKHLGRPSGSKTAIALN-RIAADASKI 452
           VDL KL+ AGDFI+KHLGRP+GSK A+ALN RI ADASKI
Sbjct: 394 VDLGKLIAAGDFISKHLGRPNGSKAAVALNRRITADASKI 433

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2039548	468	AT2G26800 [Arabidopsis thalian	0.451	0.435	0.819	9e-156
UNIPROTKB|P35915	298	HMGCL "Hydroxymethylglutaryl-C	0.435	0.661	0.649	2.1e-92
RGD|620554	325	Hmgcl "3-hydroxymethyl-3-methy	0.426	0.593	0.647	3.4e-92
MGI|MGI:96158	325	Hmgcl "3-hydroxy-3-methylgluta	0.426	0.593	0.647	5.5e-92
ZFIN|ZDB-GENE-040426-958	340	hmgcl "3-hydroxymethyl-3-methy	0.426	0.567	0.663	7e-92
UNIPROTKB|E1BU09	342	HMGCLL1 "Uncharacterized prote	0.426	0.564	0.637	1.1e-91
MGI|MGI:2446108	343	Hmgcll1 "3-hydroxymethyl-3-met	0.426	0.562	0.632	3e-91
UNIPROTKB|Q8TB92	370	HMGCLL1 "3-hydroxymethyl-3-met	0.426	0.521	0.626	1e-90
UNIPROTKB|Q29448	325	HMGCL "Hydroxymethylglutaryl-C	0.426	0.593	0.637	1.7e-90
RGD|1565090	343	Hmgcll1 "3-hydroxymethyl-3-met	0.426	0.562	0.632	2.1e-90

TAIR|locus:2039548 AT2G26800 [Arabidopsis thaliana (taxid:3702)]

 Score = 863 (308.9 bits), Expect = 9.0e-156, Sum P(2) = 9.0e-156
 Identities = 168/205 (81%), Positives = 186/205 (90%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             SASE+FS SNINC+IE+SL+RYR VA AAK  S+PVRGYVSCVVGCPVEG + PSKVAYV
Sbjct:   264 SASESFSLSNINCTIEESLLRYRVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYV 323

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
              KEL+DMGCFEISLGDTIG+GTPG+VVPMLEAVMAVVP +KLAVH HDTYGQ+L NIL+S
Sbjct:   324 VKELYDMGCFEISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVS 383

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMGIS VD S+AGLGGCPYAKGASGNVATEDVVYML+GLGV TNVDL KL+ AGDFI+K
Sbjct:   384 LQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISK 443

Query:   429 HLGRPSGSKTAIALNR-IAADASKI 452
             HLGRP+GSK A+ALNR I ADASKI
Sbjct:   444 HLGRPNGSKAAVALNRRITADASKI 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006551 "leucine metabolic process" evidence=ISS

UNIPROTKB|P35915 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 655 (235.6 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
 Identities = 128/197 (64%), Positives = 156/197 (79%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE F+K NINCSIE+SL R+  V +AA+  SIPVRGYVSCV+GCP EG I  +KVA V
Sbjct:   102 AASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEV 161

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             +K+++ MGC+EISLGD IG+GTPG++  ML AVM  VPV  LAVH HDTYGQ+L NIL++
Sbjct:   162 SKKMYSMGCYEISLGDRIGIGTPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVA 221

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMG+S VD SVAGLGGCPYA+GASGNVATED+VYML+GLG+ T VDL+KLM  G FI  
Sbjct:   222 LQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICN 281

Query:   429 HLGRPSGSKTAIALNRI 445
              L R + SK + A  R+
Sbjct:   282 ALNRRTNSKVSQAACRL 298

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=IDA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0046872 "metal ion binding" evidence=ISS

RGD|620554 Hmgcl "3-hydroxymethyl-3-methylglutaryl-CoA lyase" [Rattus norvegicus (taxid:10116)]

 Score = 650 (233.9 bits), Expect = 3.4e-92, Sum P(2) = 3.4e-92
 Identities = 125/193 (64%), Positives = 153/193 (79%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE F++ N+NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA V
Sbjct:   129 AASELFTRKNVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEV 188

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             AK+L+ MGC+EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQ+L N L++
Sbjct:   189 AKKLYSMGCYEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVA 248

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMG+S VD SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI +
Sbjct:   249 LQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQ 308

Query:   429 HLGRPSGSKTAIA 441
              L R + SK A A
Sbjct:   309 ALNRKTSSKVAQA 321

GO:0000062 "fatty-acyl-CoA binding" evidence=IPI

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0001889 "liver development" evidence=IEP

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO;ISS;IDA

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0009790 "embryo development" evidence=IEA;ISO

GO:0030145 "manganese ion binding" evidence=IEA;ISO

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0042594 "response to starvation" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=ISO;ISS

GO:0046951 "ketone body biosynthetic process" evidence=ISO;IDA

GO:0051262 "protein tetramerization" evidence=IEA;ISO

GO:0070542 "response to fatty acid" evidence=IEP

MGI|MGI:96158 Hmgcl "3-hydroxy-3-methylglutaryl-Coenzyme A lyase" [Mus musculus (taxid:10090)]

 Score = 645 (232.1 bits), Expect = 5.5e-92, Sum P(2) = 5.5e-92
 Identities = 125/193 (64%), Positives = 151/193 (78%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             + SE F++ N NCSIE+S  R+  V  AA+  SI VRGYVSC +GCP EG + P+KVA V
Sbjct:   129 AVSELFTRKNANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEV 188

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             AK+L+ MGC+EISLGDTIGVGTPG +  ML AVM  VPV  LAVH HDTYGQ+L N L++
Sbjct:   189 AKKLYSMGCYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVA 248

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMG+S VD SVAGLGGCPYAKGASGN+ATED+VYML+GLG+ T V+L+KL+ AGDFI +
Sbjct:   249 LQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIHTGVNLQKLLEAGDFICQ 308

Query:   429 HLGRPSGSKTAIA 441
              L R + SK A A
Sbjct:   309 ALNRKTSSKVAQA 321

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006637 "acyl-CoA metabolic process" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0016829 "lyase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0051262 "protein tetramerization" evidence=ISO

ZFIN|ZDB-GENE-040426-958 hmgcl "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)" [Danio rerio (taxid:7955)]

 Score = 653 (234.9 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
 Identities = 128/193 (66%), Positives = 150/193 (77%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE FSK NINCS+E+SLVR+  V  AAK   + VRGYVSCV+GCP EG + PSKVA V
Sbjct:   144 AASELFSKKNINCSVEESLVRFEEVMTAAKQEGVSVRGYVSCVLGCPYEGKVSPSKVAEV 203

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             AK L+ MGC+E+SLGDTIGVGTPG +  ML AV   +PVE LAVH HDTYGQ+L NIL++
Sbjct:   204 AKRLYSMGCYEVSLGDTIGVGTPGGMTEMLNAVKKELPVEALAVHCHDTYGQALANILVA 263

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQ G+S VD SVAGLGGCPYA+GASGNVATEDVVYML GLG+ T VDL +L+ AG FI  
Sbjct:   264 LQNGVSVVDSSVAGLGGCPYAQGASGNVATEDVVYMLHGLGIHTGVDLPRLLDAGSFICH 323

Query:   429 HLGRPSGSKTAIA 441
              + R + SK A A
Sbjct:   324 SINRRTNSKVAQA 336

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|E1BU09 HMGCLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 647 (232.8 bits), Expect = 1.1e-91, Sum P(2) = 1.1e-91
 Identities = 123/193 (63%), Positives = 156/193 (80%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE+FSK NINCSIE+S+ ++  VA +A+ ++IPVRGYVSC +GCP EG I P+KVA V
Sbjct:   142 AASESFSKMNINCSIEESIEKFEEVAKSARNMNIPVRGYVSCALGCPYEGDITPAKVAEV 201

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             +K L+ MGC+EISLGDTIGVGTPG++  MLEAVM  +P+  LAVH HDTYGQ+L NIL +
Sbjct:   202 SKRLYSMGCYEISLGDTIGVGTPGSMKRMLEAVMKEIPLSALAVHCHDTYGQALANILTA 261

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             +QMG++ VD SVAGLGGCPYAKGA+GNVATEDV+YML+GLG+ T V+L  +M AG+FI  
Sbjct:   262 IQMGVAVVDSSVAGLGGCPYAKGATGNVATEDVIYMLNGLGINTGVNLYTVMEAGNFICT 321

Query:   429 HLGRPSGSKTAIA 441
              L + + SK A A
Sbjct:   322 ALNKKTNSKVAQA 334

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:2446108 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1" [Mus musculus (taxid:10090)]

 Score = 642 (231.1 bits), Expect = 3.0e-91, Sum P(2) = 3.0e-91
 Identities = 122/193 (63%), Positives = 155/193 (80%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE+FSK NINCSIE+S+ R++ V  +A+ + IPVRGYVSC +GCP EG+I P KV  V
Sbjct:   144 AASESFSKKNINCSIEESMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEV 203

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             +K L+ MGC+EISLGDTIGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +
Sbjct:   204 SKRLYGMGCYEISLGDTIGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTA 263

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMGI+ VD +V+GLGGCPYAKGASGNVATED++YML+G+G+ T VDL K+M AG+FI K
Sbjct:   264 LQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKVMEAGEFICK 323

Query:   429 HLGRPSGSKTAIA 441
              + + + SK A A
Sbjct:   324 AVNKTTNSKVAQA 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q8TB92 HMGCLL1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 637 (229.3 bits), Expect = 1.0e-90, Sum P(2) = 1.0e-90
 Identities = 121/193 (62%), Positives = 154/193 (79%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE+FSK NINCSIE+S+ ++  V  +A+ ++IP RGYVSC +GCP EG+I P KV  V
Sbjct:   174 AASESFSKKNINCSIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEV 233

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             +K L+ MGC+EISLGDTIGVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +
Sbjct:   234 SKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTA 293

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMGI+ VD +V+GLGGCPYAKGASGNVATED++YML+GLG+ T V+L K+M AGDFI K
Sbjct:   294 LQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICK 353

Query:   429 HLGRPSGSKTAIA 441
              + + + SK A A
Sbjct:   354 AVNKTTNSKVAQA 366

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS;TAS

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0046951 "ketone body biosynthetic process" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|Q29448 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 632 (227.5 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
 Identities = 123/193 (63%), Positives = 151/193 (78%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE F+K NINCSI++SL R+  +  AA+   I VRGYVSCV+GCP EG I P+KVA V
Sbjct:   129 AASELFTKKNINCSIDESLQRFDEILKAARAAGISVRGYVSCVLGCPYEGKISPAKVAEV 188

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
              K+L+ MGC+EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQ+L N L +
Sbjct:   189 TKKLYSMGCYEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALAVHCHDTYGQALANTLTA 248

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMG+S +D SVAGLGGCPYA+GASGN+ATED+VYML+GLG+ T V+L+KL+ AG FI +
Sbjct:   249 LQMGVSVMDSSVAGLGGCPYAQGASGNLATEDLVYMLAGLGIHTGVNLQKLLEAGAFICQ 308

Query:   429 HLGRPSGSKTAIA 441
              L R + SK A A
Sbjct:   309 ALNRRTNSKVAQA 321

GO:0046951 "ketone body biosynthetic process" evidence=ISS

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS

GO:0046872 "metal ion binding" evidence=ISS

GO:0005777 "peroxisome" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

RGD|1565090 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 648 (233.2 bits), Expect = 2.1e-90, Sum P(2) = 2.1e-90
 Identities = 122/193 (63%), Positives = 155/193 (80%)

Query:   249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
             +ASE+FSK NINCSIE+S+ R+  V  +A+ ++IPVRGYVSC +GCP EG+I P KV  V
Sbjct:   144 AASESFSKKNINCSIEESMGRFEQVISSARHMNIPVRGYVSCALGCPYEGSIMPQKVTEV 203

Query:   309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
             +K L+ MGC+EISLGDT+GVGTPG++  MLE+VM  +P   LAVH HDTYGQ+L NIL +
Sbjct:   204 SKRLYSMGCYEISLGDTVGVGTPGSMKTMLESVMKEIPPGALAVHCHDTYGQALANILTA 263

Query:   369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK 428
             LQMGI+ VD +V+GLGGCPYAKGASGNVATED++YML+G+G+ T VDL K+M AGDFI K
Sbjct:   264 LQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLHKVMEAGDFICK 323

Query:   429 HLGRPSGSKTAIA 441
              + + + SK A A
Sbjct:   324 AVNKTTNSKVAQA 336

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0016020 "membrane" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81027	HMGCL_ARATH	4, ., 1, ., 3, ., 4	0.6956	0.9402	0.9081	yes	no
Q29448	HMGCL_BOVIN	4, ., 1, ., 3, ., 4	0.5778	0.6814	0.9476	yes	no
P97519	HMGCL_RAT	4, ., 1, ., 3, ., 4	0.5778	0.6814	0.9476	yes	no
P35914	HMGCL_HUMAN	4, ., 1, ., 3, ., 4	0.5641	0.6836	0.9507	yes	no
P35915	HMGCL_CHICK	4, ., 1, ., 3, ., 4	0.6037	0.6570	0.9966	yes	no
P38060	HMGCL_MOUSE	4, ., 1, ., 3, ., 4	0.5748	0.6814	0.9476	yes	no
Q5R9E1	HMGCL_PONAB	4, ., 1, ., 3, ., 4	0.5701	0.6836	0.9507	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.4	0.991
3rd Layer	4.1.3	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
PLN02746	347	PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyas	0.0
cd07938	274	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-	1e-164
PRK05692	287	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyas	1e-162
cd03174	265	cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas	1e-95
COG0119	409	COG0119, LeuA, Isopropylmalate/homocitrate/citrama	4e-61
pfam00682	236	pfam00682, HMGL-like, HMGL-like	3e-51
cd07937	275	cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an	5e-11
cd07943	263	cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo	2e-10
COG5016	472	COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr	1e-09
TIGR03217	333	TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat	3e-09
PRK12331	448	PRK12331, PRK12331, oxaloacetate decarboxylase; Pr	4e-09
TIGR02660	365	TIGR02660, nifV_homocitr, homocitrate synthase Nif	9e-09
TIGR02090	363	TIGR02090, LEU1_arch, isopropylmalate/citramalate/	2e-08
PRK11858	378	PRK11858, aksA, trans-homoaconitate synthase; Revi	8e-08
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	9e-08
cd07939	259	cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus	1e-07
TIGR00973	494	TIGR00973, leuA_bact, 2-isopropylmalate synthase,	3e-07
cd07940	268	cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase	4e-07
PRK12330	499	PRK12330, PRK12330, oxaloacetate decarboxylase; Pr	5e-07
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	9e-07
PRK08195	337	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro	1e-06
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	1e-06
PRK14041	467	PRK14041, PRK14041, oxaloacetate decarboxylase; Pr	3e-06
cd07945	280	cd07945, DRE_TIM_CMS, Leptospira interrogans citra	6e-06
PLN03228	503	PLN03228, PLN03228, methylthioalkylmalate synthase	6e-06
PRK09389	488	PRK09389, PRK09389, (R)-citramalate synthase; Prov	1e-05
cd07947	279	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci	4e-05
PRK12581	468	PRK12581, PRK12581, oxaloacetate decarboxylase; Pr	7e-04
cd07944	266	cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate	0.002

>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase

 Score =  619 bits (1598), Expect = 0.0
 Identities = 278/373 (74%), Positives = 304/373 (81%), Gaps = 27/373 (7%)

Query: 81  SFSRRTVSLGRNHKMFGSACDIYNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQN 140
           S    +   G     +      Y+S+ N+  +  + NK LKG+P+FVKIVEVGPRDGLQN
Sbjct: 1   SRGSTSTVSGTLGSSWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQN 60

Query: 141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL 200
           EKN VPT VKVELI+RLVSSGLPVVEATSFVSPKWVPQLADA+DVM AVR+LEGAR PVL
Sbjct: 61  EKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVL 120

Query: 201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNIN 260
           TPNLK                          GFEAAIAAGAKEVA+FASASE+FSKSNIN
Sbjct: 121 TPNLK--------------------------GFEAAIAAGAKEVAVFASASESFSKSNIN 154

Query: 261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI 320
           CSIE+SLVRYR VA AAK  SIPVRGYVSCVVGCP+EG +PPSKVAYVAKEL+DMGC+EI
Sbjct: 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214

Query: 321 SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV 380
           SLGDTIGVGTPGTVVPMLEAVMAVVPV+KLAVH HDTYGQ+L NIL+SLQMGISTVD SV
Sbjct: 215 SLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSV 274

Query: 381 AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI 440
           AGLGGCPYAKGASGNVATEDVVYML+GLGV TNVDL KLM AGDFI+KHLGRPSGSKTA+
Sbjct: 275 AGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAV 334

Query: 441 ALN-RIAADASKI 452
           AL+ RI A ASKI
Sbjct: 335 ALSARITAAASKI 347

Length = 347

>gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

 Score =  463 bits (1195), Expect = e-164
 Identities = 162/298 (54%), Positives = 197/298 (66%), Gaps = 26/298 (8%)

Query: 129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA 188
           IVEVGPRDGLQNEK  +PT  K+ELI  L ++GL  +E TSFVSPKWVPQ+ADA +V+  
Sbjct: 1   IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAG 60

Query: 189 VRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFA 248
           +    G R   L PNL+                          G E A+AAG  EVA+F 
Sbjct: 61  LPRRPGVRYSALVPNLR--------------------------GAERALAAGVDEVAVFV 94

Query: 249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
           SASE FS+ NINCSI +SL R+  VA  AK   + VRGYVS   GCP EG +PP +VA V
Sbjct: 95  SASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEV 154

Query: 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
           A+ L D+GC EISLGDTIGV TP  V  +LEAV+   P EKLA+H HDT GQ+L NIL +
Sbjct: 155 AERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAA 214

Query: 369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFI 426
           L+ G+   D SV GLGGCP+A GA+GNVATED+VYML G+G+ET +DL KL+ A  +I
Sbjct: 215 LEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWI 272

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274

>gnl|CDD|180206 PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional

 Score =  457 bits (1179), Expect = e-162
 Identities = 185/313 (59%), Positives = 217/313 (69%), Gaps = 26/313 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEK  +PT  K+ LI RL ++GL  +E  SFVSPKWVPQ+ADA
Sbjct: 1   LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADA 60

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
            +VM  ++   G     LTPNLK                          G EAA+AAGA 
Sbjct: 61  AEVMAGIQRRPGVTYAALTPNLK--------------------------GLEAALAAGAD 94

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           EVA+FASASEAFS+ NINCSI +SL R+  VA AAK   + VRGYVSCV+GCP EG +PP
Sbjct: 95  EVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPP 154

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
             VA VA+ L  +GC+EISLGDTIGVGTPG V  +LEAV+A  P E+LA H HDTYGQ+L
Sbjct: 155 EAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL 214

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            NI  SL+ GI+  D SV GLGGCPYA GASGNVATEDV+YML GLG+ET +DL KL+ A
Sbjct: 215 ANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRA 274

Query: 423 GDFINKHLGRPSG 435
           G FI   LGRP  
Sbjct: 275 GQFIQSKLGRPLP 287

Length = 287

>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily

 Score =  288 bits (740), Expect = 1e-95
 Identities = 105/298 (35%), Positives = 147/298 (49%), Gaps = 36/298 (12%)

Query: 130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV 189
            +   RDGLQ+E  T  T  K+E+   L  +G+  +E  S  SPK VPQ+ D  +V+ A+
Sbjct: 1   TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAI 60

Query: 190 RDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFA 248
           R L    +L  L  N +                         +G E A+ AG  EV IF 
Sbjct: 61  RKLVPNVKLQALVRNRE-------------------------KGIERALEAGVDEVRIFD 95

Query: 249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV 308
           SASE  S+ N+N S E+ L        AAK   + V G +    GC       P  V  V
Sbjct: 96  SASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKT----DPEYVLEV 151

Query: 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS 368
           AK L + G  EISL DT+G+ TP  V  +++A+   +P   L +H H+T G ++ N L +
Sbjct: 152 AKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAA 211

Query: 369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFI 426
           L+ G   VD SV GLG        +GN ATED+V  L GLG++T +DL KL+    ++
Sbjct: 212 LEAGADRVDGSVNGLG------ERAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYV 263

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265

>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

 Score =  204 bits (520), Expect = 4e-61
 Identities = 70/310 (22%), Positives = 117/310 (37%), Gaps = 37/310 (11%)

Query: 125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARD 184
           + V I +   RDG Q    +     K+ + + L   G+  +EA   V+     +   A  
Sbjct: 1   KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIA 60

Query: 185 VMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEV 244
                     A +  L   +K                         +  EA + AG   +
Sbjct: 61  EKAG--LFICALIAALARAIK-------------------------RDIEALLEAGVDRI 93

Query: 245 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304
            IF + S+   +  +  + E+ L R       A+   + VR           E       
Sbjct: 94  HIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAE--- 150

Query: 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLP 363
              V K   + G   I+L DT+GV TP  V  ++EA+ A VP +  L+VH H+  G ++ 
Sbjct: 151 ---VVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVA 207

Query: 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG 423
           N L +++ G   V+ +V G+G      G +        + +    GV+T +DL KL  A 
Sbjct: 208 NSLAAVEAGADQVEGTVNGIG---ERAGNAALEEVVLALALRKDYGVDTGIDLEKLTEAS 264

Query: 424 DFINKHLGRP 433
             + +  G P
Sbjct: 265 RLVERLTGIP 274

Length = 409

>gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like

 Score =  172 bits (439), Expect = 3e-51
 Identities = 69/275 (25%), Positives = 110/275 (40%), Gaps = 40/275 (14%)

Query: 136 DGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDLEG 194
           DG Q          K+ + R L  +G+  +E    F+SP     +    +V++       
Sbjct: 1   DGEQALGAAFSVEEKLAIARALDEAGVDEIEVGFPFMSPTDFESVRAIAEVLK------K 54

Query: 195 ARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF 254
           A++  L               +     I           EAA  AGA  V +F + S+  
Sbjct: 55  AKIQALL--------------RPVEHDI-------DAAVEAAKGAGADRVHVFIATSDLH 93

Query: 255 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD 314
            K  +N   E+   R  A   AA+   I V       +GC   G    + +  V +   +
Sbjct: 94  RKYKLNKDREEVADRAVAAVEAARSAGIDVE------LGCEDAGRTDLAFLIEVVEVAQE 147

Query: 315 MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS 374
            G   I++ DT+GV TP     ++ A+   VP   + VH H+  G ++ N L +++ G  
Sbjct: 148 AGATRINIADTVGVLTPNEAADLISALKDRVPPVIIEVHCHNDLGMAVANSLAAVEAGAD 207

Query: 375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG 409
            VD +V GLG        +GN A E++V  L  LG
Sbjct: 208 RVDGTVNGLG------ERAGNAALEELVAALEVLG 236

This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236

>gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

 Score = 62.8 bits (154), Expect = 5e-11
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 15/132 (11%)

Query: 296 VEGAI-----PPSKVAY---VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV 347
           VEGAI     P   + Y   +AKEL DMG   I + D  G+ TP     +++A+   V +
Sbjct: 134 VEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGL 193

Query: 348 EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG 407
             + +H HDT G ++   L + + G+  VD +++ L G       +   +TE +V  L G
Sbjct: 194 P-IHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGG------TSQPSTESMVAALRG 246

Query: 408 LGVETNVDLRKL 419
            G +T +DL KL
Sbjct: 247 TGRDTGLDLEKL 258

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275

>gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG 359
             P ++A  AK +   G   + + D+ G   P  V   + A+   +    +  H H+  G
Sbjct: 138 ASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLG 197

Query: 360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
            ++ N L +++ G + +D S+AGLG        +GN   E +V +L  +G+ET +DL KL
Sbjct: 198 LAVANSLAAVEAGATRIDGSLAGLGAG------AGNTPLEVLVAVLERMGIETGIDLYKL 251

Query: 420 MLAGDFI 426
           M A + +
Sbjct: 252 MDAAEDL 258

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263

>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 7/121 (5%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           +AKEL +MG   I + D  G+ TP     +++A+   +PV  + +H H T G +    L 
Sbjct: 161 LAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLK 219

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 427
           +++ G+  +D +++     P + G S   ATE +V  L G G +T +DL  L    ++  
Sbjct: 220 AVEAGVDGIDTAIS-----PLSGGTS-QPATETMVAALRGTGYDTGLDLELLEEIAEYFR 273

Query: 428 K 428
           +
Sbjct: 274 E 274

Length = 472

>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 7/128 (5%)

Query: 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTY 358
            PP K+A  AK +   G   + + D+ G   P  V   + A+ AV+ P  ++  H H   
Sbjct: 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199

Query: 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRK 418
             ++ N + +++ G + +D S+ GLG      GA GN   E  V +L  LG  T  DL K
Sbjct: 200 SLAVANSIAAIEAGATRIDASLRGLGA-----GA-GNAPLEVFVAVLDRLGWNTGCDLFK 253

Query: 419 LMLAGDFI 426
           LM A + I
Sbjct: 254 LMDAAEDI 261

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated [Energy metabolism, Other]. Length = 333

>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional

 Score = 58.2 bits (141), Expect = 4e-09
 Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           +AKE+ +MG   I + D  G+ TP     +++ +   V V  L VH H T G +    L 
Sbjct: 159 LAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-PLEVHTHATSGIAEMTYLK 217

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 427
           +++ G   +D +++     P+A G S   ATE +V  L  LG +T +DL +L    ++ N
Sbjct: 218 AIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGLDLEELSEIAEYFN 271

Query: 428 K 428
            
Sbjct: 272 P 272

Length = 448

>gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV

 Score = 56.5 bits (137), Expect = 9e-09
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 22/205 (10%)

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVA--HAAKVLSIPV-RG-YVS 289
           EAA   G   V I    S+          IE  L + RA      A+++S    RG +VS
Sbjct: 79  EAAARCGVDAVHISIPVSDL--------QIEAKLRKDRAWVLERLARLVSFARDRGLFVS 130

Query: 290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK 349
             VG        P  +  +A+   + G       DT+G+  P +   ++ A+   V +  
Sbjct: 131 --VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP- 187

Query: 350 LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL- 408
           L +H H+  G +  N L +++ G + V+ +V GLG        +GN A E+V   L  L 
Sbjct: 188 LEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG------ERAGNAALEEVAMALKRLL 241

Query: 409 GVETNVDLRKLMLAGDFINKHLGRP 433
           G +T +D  +L      + +  GRP
Sbjct: 242 GRDTGIDTSRLPALSQLVARASGRP 266

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365

>gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 50/297 (16%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
           V I +   RDG Q    ++    KVE+ R+L   G+ V+EA   ++ +            
Sbjct: 1   VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE------------ 48

Query: 187 EAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAI 246
               + E          +K I Q  +  + C  +          +  + AI  G   +  
Sbjct: 49  ---GEFEA---------IKKISQEGLNAEICSLARALK------KDIDKAIDCGVDSIHT 90

Query: 247 FASASEAFSKSNINCSIEDSL-VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--PPS 303
           F + S    K  +  S ++ L     AV +A +       G +   V    E A      
Sbjct: 91  FIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKE------HGLI---VEFSAEDATRTDID 141

Query: 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP 363
            +  V K   + G   I++ DT+GV TP  +  +++ +   V +  ++VH H+ +G +  
Sbjct: 142 FLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP-ISVHCHNDFGLATA 200

Query: 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKL 419
           N +  ++ G   V  +V G+G        +GN A E+VV  L  L GV+T +   KL
Sbjct: 201 NSIAGVKAGAEQVHVTVNGIG------ERAGNAALEEVVMALKYLYGVKTKIKTEKL 251

Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363

>gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed

 Score = 53.6 bits (130), Expect = 8e-08
 Identities = 52/191 (27%), Positives = 85/191 (44%), Gaps = 22/191 (11%)

Query: 234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR-YRAVAHAAKVLSIPVRG-YVSCV 291
           +A+I  G   V IF + S+   K  +  + E+ L R   AV +A         G YVS  
Sbjct: 82  DASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKD------HGLYVS-- 133

Query: 292 VGCPVEGA--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK 349
                E A       +   AK   + G   +   DT+G+  P T+  +++ ++  V +  
Sbjct: 134 FS--AEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP- 190

Query: 350 LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL- 408
           + VH H+ +G +  N L  ++ G   V  +V GLG        +GN A E+VV  L  L 
Sbjct: 191 IEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLG------ERAGNAALEEVVMALKYLY 244

Query: 409 GVETNVDLRKL 419
           G++  +D  +L
Sbjct: 245 GIDLGIDTERL 255

Length = 378

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 28/121 (23%), Positives = 58/121 (47%), Gaps = 7/121 (5%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           +A+EL +MG   I + D  G+ TP     ++ A+     +  + +H H T G +   +L 
Sbjct: 154 LAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLP-VHLHSHATTGMAEMALLK 212

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 427
           +++ G   +D +++ +       G + +  TE +V  L G G +T +D+  L+    +  
Sbjct: 213 AIEAGADGIDTAISSM------SGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFR 266

Query: 428 K 428
           +
Sbjct: 267 E 267

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 26/194 (13%)

Query: 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA--VAHAAKVLSIPV-RG-YV 288
            EAA+  G   V I      +   S+I+  +   L + RA  +    +++     RG +V
Sbjct: 75  IEAALRCGVTAVHI------SIPVSDIH--LAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126

Query: 289 SCVVGCPVEGA--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP 346
           S  VG   E A    P  +   A+   + G   +   DT+G+  P T   ++  + A   
Sbjct: 127 S--VGA--EDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD 182

Query: 347 VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS 406
           +  L  H H+  G +  N L +++ G + V  +V GLG        +GN A E+VV  L 
Sbjct: 183 LP-LEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG------ERAGNAALEEVVMALK 235

Query: 407 GL-GVETNVDLRKL 419
            L G +T +D  +L
Sbjct: 236 HLYGRDTGIDTTRL 249

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 259

>gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 70/323 (21%), Positives = 129/323 (39%), Gaps = 49/323 (15%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
           + I +   RDG Q+   ++    K+++   L   G+ ++EA   VS        D   V 
Sbjct: 2   IIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQ 56

Query: 187 EAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAI 246
              R ++  R+  L               +C    I +         EA   A    +  
Sbjct: 57  RIARTVKNPRVCGLA--------------RCVEKDIDA-------AAEALKPAEKFRIHT 95

Query: 247 FASASEAFSKSNINCSIEDSLVRY-RAVAHAAKVLSIPVRGYVSCV-VGCPVEGAIPPSK 304
           F + S    +  +  + ++ L R    V +A        + +   V   C   G      
Sbjct: 96  FIATSPIHLEHKLKMTRDEVLERAVGMVKYA--------KNFTDDVEFSCEDAGRTEIPF 147

Query: 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQS 361
           +A + +   + G   I++ DT+G   P     +++ +   VP ++K  L+VH H+  G +
Sbjct: 148 LARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLA 207

Query: 362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLR 417
           + N L ++Q G   V+C++ G+G        +GN A E+VV  L      LGVET ++ +
Sbjct: 208 VANSLAAVQNGARQVECTINGIG------ERAGNAALEEVVMALKVRKDFLGVETGINTK 261

Query: 418 KLMLAGDFINKHLGRPSGSKTAI 440
           ++      +++  G P     AI
Sbjct: 262 EIYRTSRLVSQLTGMPVQPNKAI 284

This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494

>gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

 Score = 50.9 bits (123), Expect = 4e-07
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 12/107 (11%)

Query: 320 ISLGDTIGVGTPGTVVPMLEAVMAVVPVEK--LAVHLHDTYGQSLPNILISLQMGISTVD 377
           I++ DT+G  TP     +++ +   VP  K  ++VH H+  G ++ N L +++ G   V+
Sbjct: 160 INIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVE 219

Query: 378 CSVAGLGGCPYAKGASGNVATEDVV----YMLSGLGVETNVDLRKLM 420
           C++ G+G        +GN A E+VV          GVET +D  +L 
Sbjct: 220 CTINGIG------ERAGNAALEEVVMALKTRYDYYGVETGIDTEELY 260

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268

>gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVM-AVVPVEKLAVHLHDTYGQSLPNILI 367
           AK L DMG   I + D   +  P     +++ +  A     ++ +H H T G +L +++ 
Sbjct: 161 AKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFIN 427
           +++ G+  VD +++ +   P      G+  TE +V ML G G  T +D+ +L+   D   
Sbjct: 221 AIEAGVDVVDTAISSMSLGP------GHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFK 274

Query: 428 KHLGR 432
           K   +
Sbjct: 275 KVRPK 279

Length = 499

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 51.0 bits (123), Expect = 9e-07
 Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 19/147 (12%)

Query: 292 VGCPVEGAI--PPSKV----AYV--AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA 343
            G  V+G I    S V     YV  AKEL +MGC  I + D  G+ TP       E V A
Sbjct: 135 AGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAY---ELVKA 191

Query: 344 VVPVEKLAVHLH--DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV 401
           +     L V LH   T G +    L +++ G+  +D +++     P A G S    TE +
Sbjct: 192 LKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS-----PLAFGTS-QPPTESM 245

Query: 402 VYMLSGLGVETNVDLRKLMLAGDFINK 428
           V  L G   +T +DL  L    ++  +
Sbjct: 246 VAALKGTPYDTGLDLELLFEIAEYFRE 272

Length = 592

>gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

 Score = 49.8 bits (120), Expect = 1e-06
 Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 7/126 (5%)

Query: 300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTY 358
            PP K+A  AK +   G   + + D+ G   P  V   + A+ A +  + ++  H H+  
Sbjct: 141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNL 200

Query: 359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRK 418
           G  + N L +++ G + +D S+AGLG      GA GN   E +V +L  +G ET VDL K
Sbjct: 201 GLGVANSLAAVEAGATRIDGSLAGLGA-----GA-GNTPLEVLVAVLDRMGWETGVDLYK 254

Query: 419 LMLAGD 424
           LM A +
Sbjct: 255 LMDAAE 260

Length = 337

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           +AK+L DMG   + + D  G+  P     ++  +   V V  L +H H T G S   +L 
Sbjct: 160 LAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVP-LHLHCHATTGLSTATLLK 218

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           +++ GI  VD +++ +    Y     G+ ATE +V  L G   +T +D+ KL
Sbjct: 219 AIEAGIDGVDTAISSMS-MTY-----GHSATETLVATLEGTERDTGLDILKL 264

Length = 593

>gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 43/147 (29%), Positives = 64/147 (43%), Gaps = 21/147 (14%)

Query: 293 GCPVEGAI-----PPSKVAY---VAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAV 341
           G  V+GAI     P   + Y    A+EL DMG   I + D  G+ TP     +V  L+  
Sbjct: 135 GAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKK 194

Query: 342 MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDV 401
             V PVE   VH H T G +    L +++ G    D +++     P++ G S     E +
Sbjct: 195 FGV-PVE---VHSHCTTGLASLAYLAAVEAGADMFDTAIS-----PFSMGTS-QPPFESM 244

Query: 402 VYMLSGLGVETNVDLRKLMLAGDFINK 428
            Y     G ET+ D + L    ++  K
Sbjct: 245 YYAFRENGKETDFDRKALKFLVEYFTK 271

Length = 467

>gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS 361
           P  V  +   L D+    I L DT+G+ +P      +  ++   P      H H+ Y  +
Sbjct: 146 PDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLA 205

Query: 362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKL 419
           + N+L +++ GI  +  +V GLG        +GN     V+ +L   L V+TN+D ++L
Sbjct: 206 VANVLAAVKAGIKGLHTTVNGLG------ERAGNAPLASVIAVLKDKLKVKTNIDEKRL 258

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280

>gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional

 Score = 48.0 bits (114), Expect = 6e-06
 Identities = 69/324 (21%), Positives = 127/324 (39%), Gaps = 55/324 (16%)

Query: 126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRL-------VSSGLPVVEATSFVSPKWVPQ 178
           +V++++   RDG Q+   ++    K+E+ R+L       +  G P      F + K +  
Sbjct: 84  YVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSSEEEFEAVKTI-- 141

Query: 179 LADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIA 238
              A+ V   V D E   +PV+               +C    I +        +EA   
Sbjct: 142 ---AKTVGNEV-DEETGYVPVICG-----------IARCKKRDIEA-------AWEALKY 179

Query: 239 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG 298
           A    +  F S S+   K  +  + E+ +    +    AK L     G+     GC   G
Sbjct: 180 AKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL-----GFHDIQFGCEDGG 234

Query: 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLH 355
                 +  +  E    G   + + DT+G+  P   G +V  ++A    +     +VH H
Sbjct: 235 RSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCH 294

Query: 356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVV--------YMLSG 407
           +  G +  N +  +  G   V+ ++ G+G        SGN + E+VV        Y+++ 
Sbjct: 295 NDLGLATANTIAGICAGARQVEVTINGIG------ERSGNASLEEVVMALKCRGAYLMN- 347

Query: 408 LGVETNVDLRKLMLAGDFINKHLG 431
            GV T +D R++M     + ++ G
Sbjct: 348 -GVYTGIDTRQIMATSKMVQEYTG 370

Length = 503

>gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 12/115 (10%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK--LAVHLHDTYGQSLPNI 365
           + K   + G   I   DT+G+ TP       E    +  + K  +++H H+ +G ++ N 
Sbjct: 148 LYKAGIEAGADRICFCDTVGILTPEK---TYELFKRLSELVKGPVSIHCHNDFGLAVANT 204

Query: 366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKL 419
           L +L  G   V  ++ G+G        +GN + E+VV  L  L  VET + L +L
Sbjct: 205 LAALAAGADQVHVTINGIG------ERAGNASLEEVVMALKHLYDVETGIKLEEL 253

Length = 488

>gnl|CDD|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 25/190 (13%)

Query: 233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV 292
            +     G KE  I  S S+      +  + E+++ +Y  +   A    I  R ++  + 
Sbjct: 80  LKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDIT 139

Query: 293 GCPVEGAIPPSKVAYVAKELHDMGCFE-----ISLGDTIGVGTPGTVVPMLEAV------ 341
              + G + P        +L  +         I L DT+G G P     +  +V      
Sbjct: 140 RADIYGFVLP-----FVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYG 194

Query: 342 ---MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVAT 398
                 VP E L  H H+ + +++ N + +   G S V+C++ G+G        +GN   
Sbjct: 195 LRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIG------ERTGNCPL 248

Query: 399 EDVVYMLSGL 408
           E +V   + L
Sbjct: 249 EAMVIEYAQL 258

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 279

>gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional

 Score = 41.6 bits (97), Expect = 7e-04
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 7/108 (6%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           + KEL +MG   I + D  G+ TP     ++  + A+  +  L VH H T G S    L 
Sbjct: 168 LVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNL-PLIVHTHATSGISQMTYLA 226

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD 415
           +++ G   +D +++     P+++G S   ATE +   L   G +  +D
Sbjct: 227 AVEAGADRIDTALS-----PFSEGTS-QPATESMYLALKEAGYDITLD 268

Length = 468

>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 11/112 (9%)

Query: 320 ISLGDTIGVGTPGTVVPMLEAVMA-VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC 378
             + D+ G   P  +  ++  + + +    KL  H H+    +L N L ++++G+  +D 
Sbjct: 155 FYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214

Query: 379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL 430
           +V G+G     +GA GN+ TE ++  L+        +L  ++   + I++++
Sbjct: 215 TVYGMG-----RGA-GNLPTELLLDYLNNK-FGKKYNLEPVL---ELIDEYI 256

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
PLN02746	347	hydroxymethylglutaryl-CoA lyase	100.0
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	100.0
KOG2368	316	consensus Hydroxymethylglutaryl-CoA lyase [Energy	100.0
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	100.0
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	100.0
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	100.0
PRK00915	513	2-isopropylmalate synthase; Validated	100.0
PLN03228	503	methylthioalkylmalate synthase; Provisional	100.0
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	100.0
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	100.0
PRK09389	488	(R)-citramalate synthase; Provisional	100.0
PLN02321	632	2-isopropylmalate synthase	100.0
COG0119	409	LeuA Isopropylmalate/homocitrate/citramalate synth	100.0
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	100.0
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	100.0
TIGR00970	564	leuA_yeast 2-isopropylmalate synthase, yeast type.	100.0
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	100.0
PRK03739	552	2-isopropylmalate synthase; Validated	100.0
PRK14847	333	hypothetical protein; Provisional	100.0
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	100.0
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	100.0
KOG2367	560	consensus Alpha-isopropylmalate synthase/homocitra	100.0
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	100.0
cd07942	284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	100.0
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	100.0
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	100.0
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	100.0
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	100.0
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	100.0
PRK12330	499	oxaloacetate decarboxylase; Provisional	100.0
PRK12331	448	oxaloacetate decarboxylase; Provisional	100.0
PRK14041	467	oxaloacetate decarboxylase; Provisional	100.0
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	100.0
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	100.0
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	100.0
PRK09282	592	pyruvate carboxylase subunit B; Validated	100.0
PRK14040	593	oxaloacetate decarboxylase; Provisional	100.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	100.0
PRK12581	468	oxaloacetate decarboxylase; Provisional	100.0
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	100.0
PRK14042	596	pyruvate carboxylase subunit B; Provisional	100.0
PRK12999	1146	pyruvate carboxylase; Reviewed	100.0
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	100.0
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	100.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.97
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	99.94
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	98.64
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.18
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	98.16
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	98.14
PRK07094	323	biotin synthase; Provisional	98.07
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	98.03
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.03
PLN02389	379	biotin synthase	98.02
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	98.0
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	97.9
PRK07360	371	FO synthase subunit 2; Reviewed	97.86
PLN02591	250	tryptophan synthase	97.82
PRK15108	345	biotin synthase; Provisional	97.81
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	97.72
PRK08445	348	hypothetical protein; Provisional	97.71
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	97.71
PRK06256	336	biotin synthase; Validated	97.69
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	97.66
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	97.63
PRK08444	353	hypothetical protein; Provisional	97.62
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.49
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	97.45
PRK07315	293	fructose-bisphosphate aldolase; Provisional	97.45
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	97.44
PRK05927	350	hypothetical protein; Provisional	97.41
PRK07084	321	fructose-bisphosphate aldolase; Provisional	97.41
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	97.39
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.37
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	97.34
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.31
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.29
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	97.26
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.24
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	97.21
PRK06245	336	cofG FO synthase subunit 1; Reviewed	97.16
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.14
PRK05835	307	fructose-bisphosphate aldolase; Provisional	97.13
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	97.12
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	97.12
TIGR03550	322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	97.1
PRK08185	283	hypothetical protein; Provisional	97.09
PRK07709	285	fructose-bisphosphate aldolase; Provisional	97.07
PRK06801	286	hypothetical protein; Provisional	97.07
PRK08508	279	biotin synthase; Provisional	97.05
PRK01060	281	endonuclease IV; Provisional	97.04
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	97.03
PRK09856	275	fructoselysine 3-epimerase; Provisional	97.01
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.0
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	96.99
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	96.99
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	96.97
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.96
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	96.96
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	96.95
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	96.95
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	96.94
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.93
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.91
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.9
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	96.9
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	96.88
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	96.87
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	96.87
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	96.85
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	96.85
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	96.84
PRK05926	370	hypothetical protein; Provisional	96.83
PRK09197	350	fructose-bisphosphate aldolase; Provisional	96.81
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.8
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	96.8
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	96.79
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	96.79
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	96.78
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	96.78
PLN02428	349	lipoic acid synthase	96.78
PRK11613	282	folP dihydropteroate synthase; Provisional	96.74
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	96.65
PTZ00413	398	lipoate synthase; Provisional	96.64
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	96.63
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	96.61
PRK09234	843	fbiC FO synthase; Reviewed	96.61
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	96.56
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.55
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.55
PRK12928	290	lipoyl synthase; Provisional	96.53
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.46
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	96.46
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	96.44
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	96.42
COG0826	347	Collagenase and related proteases [Posttranslation	96.42
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	96.41
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	96.41
PRK13753	279	dihydropteroate synthase; Provisional	96.4
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	96.4
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	96.39
PRK12677	384	xylose isomerase; Provisional	96.36
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	96.35
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	96.34
PRK09997	258	hydroxypyruvate isomerase; Provisional	96.34
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.27
PRK07226	267	fructose-bisphosphate aldolase; Provisional	96.22
PRK06806	281	fructose-bisphosphate aldolase; Provisional	96.21
PLN02951	373	Molybderin biosynthesis protein CNX2	96.18
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	96.17
TIGR00284	499	dihydropteroate synthase-related protein. This pro	96.17
COG2896	322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	96.11
COG1060	370	ThiH Thiamine biosynthesis enzyme ThiH and related	96.09
PRK06267	350	hypothetical protein; Provisional	96.03
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	96.01
PRK08005	210	epimerase; Validated	95.94
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	95.93
PRK15452	443	putative protease; Provisional	95.91
PRK05481	289	lipoyl synthase; Provisional	95.9
PRK09989	258	hypothetical protein; Provisional	95.89
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	95.87
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.85
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	95.8
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	95.77
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	95.71
PRK06852	304	aldolase; Validated	95.7
TIGR03470	318	HpnH hopanoid biosynthesis associated radical SAM	95.68
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.63
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	95.62
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	95.58
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	95.58
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.55
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	95.54
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	95.47
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	95.45
PRK08227	264	autoinducer 2 aldolase; Validated	95.43
PLN02858	1378	fructose-bisphosphate aldolase	95.42
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	95.35
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	95.33
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	95.32
TIGR02631	382	xylA_Arthro xylose isomerase, Arthrobacter type. T	95.31
TIGR01210	313	conserved hypothetical protein TIGR01210. This fam	95.27
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	95.27
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	95.24
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	95.24
PLN02334	229	ribulose-phosphate 3-epimerase	95.22
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	95.21
TIGR03586	327	PseI pseudaminic acid synthase.	95.16
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	95.16
cd00423	258	Pterin_binding Pterin binding enzymes. This family	95.14
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	95.1
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.09
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	95.09
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	95.03
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.03
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	95.0
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	95.0
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	94.98
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	94.97
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	94.97
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.97
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	94.93
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	94.92
TIGR02668	302	moaA_archaeal probable molybdenum cofactor biosynt	94.84
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.8
PRK09249	453	coproporphyrinogen III oxidase; Provisional	94.76
PRK13347	453	coproporphyrinogen III oxidase; Provisional	94.71
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	94.68
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	94.67
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	94.67
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	94.65
COG1082	274	IolE Sugar phosphate isomerases/epimerases [Carboh	94.62
PRK09358	340	adenosine deaminase; Provisional	94.62
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.55
TIGR00538	455	hemN oxygen-independent coproporphyrinogen III oxi	94.53
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	94.53
TIGR03822	321	AblA_like_2 lysine-2,3-aminomutase-related protein	94.53
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	94.51
TIGR01290	442	nifB nitrogenase cofactor biosynthesis protein Nif	94.51
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	94.5
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	94.42
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	94.39
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	94.39
PRK13523	337	NADPH dehydrogenase NamA; Provisional	94.36
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	94.35
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	94.32
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	94.31
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	94.29
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	94.28
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	94.24
PTZ00372	413	endonuclease 4-like protein; Provisional	94.22
PRK09234	843	fbiC FO synthase; Reviewed	94.21
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	94.19
PRK08446	350	coproporphyrinogen III oxidase; Provisional	94.11
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	94.07
TIGR03821	321	AblA_like_1 lysine-2,3-aminomutase-related protein	94.05
PRK05660	378	HemN family oxidoreductase; Provisional	94.03
TIGR01579	414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	94.01
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	93.9
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	93.9
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	93.85
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	93.71
PRK05628	375	coproporphyrinogen III oxidase; Validated	93.69
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	93.68
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	93.66
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	93.63
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	93.61
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	93.58
PLN02424	332	ketopantoate hydroxymethyltransferase	93.57
PF01702	238	TGT: Queuine tRNA-ribosyltransferase; InterPro: IP	93.57
PRK14338	459	(dimethylallyl)adenosine tRNA methylthiotransferas	93.57
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	93.53
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	93.46
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	93.43
PRK08508	279	biotin synthase; Provisional	93.39
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.31
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.3
PRK08599	377	coproporphyrinogen III oxidase; Provisional	93.29
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	93.25
PRK05904	353	coproporphyrinogen III oxidase; Provisional	93.23
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	93.19
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	93.18
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	93.17
PRK14057	254	epimerase; Provisional	93.16
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	93.06
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	93.04
PRK10605	362	N-ethylmaleimide reductase; Provisional	92.96
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	92.95
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	92.91
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	92.9
COG3473	238	Maleate cis-trans isomerase [Secondary metabolites	92.9
PRK13745	412	anaerobic sulfatase-maturase; Provisional	92.89
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	92.89
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	92.88
COG3623	287	SgaU Putative L-xylulose-5-phosphate 3-epimerase [	92.86
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	92.82
PRK06294	370	coproporphyrinogen III oxidase; Provisional	92.81
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	92.79
PRK15063	428	isocitrate lyase; Provisional	92.77
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	92.76
PRK14325	444	(dimethylallyl)adenosine tRNA methylthiotransferas	92.74
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	92.71
PRK05835	307	fructose-bisphosphate aldolase; Provisional	92.7
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	92.69
PRK04147	293	N-acetylneuraminate lyase; Provisional	92.65
PRK05799	374	coproporphyrinogen III oxidase; Provisional	92.6
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	92.59
TIGR01430	324	aden_deam adenosine deaminase. This family include	92.54
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	92.49
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	92.43
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	92.42
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	92.4
PRK14332	449	(dimethylallyl)adenosine tRNA methylthiotransferas	92.35
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	92.29
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	92.27
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	92.23
COG0535	347	Predicted Fe-S oxidoreductases [General function p	92.23
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	92.22
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	92.22
PRK14334	440	(dimethylallyl)adenosine tRNA methylthiotransferas	92.19
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	92.17
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	92.16
TIGR00089	429	RNA modification enzyme, MiaB family. This subfami	92.09
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	91.98
PRK15108	345	biotin synthase; Provisional	91.97
PRK00112	366	tgt queuine tRNA-ribosyltransferase; Provisional	91.97
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	91.94
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	91.91
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	91.87
PRK08208	430	coproporphyrinogen III oxidase; Validated	91.78
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	91.76
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	91.76
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	91.74
PRK11572	248	copper homeostasis protein CutC; Provisional	91.65
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	91.61
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	91.57
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	91.51
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	91.43
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	91.41
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	91.41
PRK07094	323	biotin synthase; Provisional	91.41
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	91.41
PRK00208	250	thiG thiazole synthase; Reviewed	91.41
PRK07379	400	coproporphyrinogen III oxidase; Provisional	91.39
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	91.37
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	91.34
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	91.31
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	91.25
PLN02623	581	pyruvate kinase	91.22
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	91.16
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	91.15
PLN02591	250	tryptophan synthase	91.13
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	91.08
PRK14340	445	(dimethylallyl)adenosine tRNA methylthiotransferas	91.04
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	91.04
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	90.97
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	90.87
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	90.82
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	90.81
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	90.81
PRK10481	224	hypothetical protein; Provisional	90.78
PRK14339	420	(dimethylallyl)adenosine tRNA methylthiotransferas	90.77
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	90.74
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	90.7
PRK07360	371	FO synthase subunit 2; Reviewed	90.64
COG0648	280	Nfo Endonuclease IV [DNA replication, recombinatio	90.59
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	90.57
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	90.56
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	90.54
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	90.49
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	90.43
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	90.41
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	90.37
PRK03170	292	dihydrodipicolinate synthase; Provisional	90.37
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	90.33
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	90.32
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	90.31
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	90.28
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	90.27
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	90.23
PF07302	221	AroM: AroM protein; InterPro: IPR010843 This famil	90.22
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	90.13
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	90.13
PRK13758	370	anaerobic sulfatase-maturase; Provisional	90.09
PRK06801	286	hypothetical protein; Provisional	90.09
PRK14336	418	(dimethylallyl)adenosine tRNA methylthiotransferas	90.07
PRK14331	437	(dimethylallyl)adenosine tRNA methylthiotransferas	90.05
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	90.05
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	90.03
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	89.98
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	89.93
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	89.9
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	89.87
PRK14330	434	(dimethylallyl)adenosine tRNA methylthiotransferas	89.86
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	89.85
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	89.84
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	89.83
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	89.8
PRK08207	488	coproporphyrinogen III oxidase; Provisional	89.76
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	89.76
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	89.74
PRK14337	446	(dimethylallyl)adenosine tRNA methylthiotransferas	89.74
PF02548	261	Pantoate_transf: Ketopantoate hydroxymethyltransfe	89.7
TIGR00449	367	tgt_general tRNA-guanine transglycosylases, variou	89.69
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.69
PRK14335	455	(dimethylallyl)adenosine tRNA methylthiotransferas	89.68
PRK08444	353	hypothetical protein; Provisional	89.66
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	89.49
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	89.45
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	89.41
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	89.4
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	89.39
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	89.35
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	89.26
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	89.24
PTZ00124	362	adenosine deaminase; Provisional	89.2
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	89.17
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	89.17
PRK11613	282	folP dihydropteroate synthase; Provisional	89.13
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	89.0
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	88.99
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	88.87
PRK14326	502	(dimethylallyl)adenosine tRNA methylthiotransferas	88.84
PRK08185	283	hypothetical protein; Provisional	88.78
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	88.77
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	88.75
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	88.75
PLN02417	280	dihydrodipicolinate synthase	88.7
TIGR01125	430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	88.7
TIGR00430	368	Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin	88.64
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	88.63
cd01299	342	Met_dep_hydrolase_A Metallo-dependent hydrolases,	88.57
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	88.55
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	88.37
PRK14328	439	(dimethylallyl)adenosine tRNA methylthiotransferas	88.35
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	88.34
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	88.3
PRK14327	509	(dimethylallyl)adenosine tRNA methylthiotransferas	88.26
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	88.24
TIGR01574	438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	88.24
PRK03170	292	dihydrodipicolinate synthase; Provisional	88.19
PRK07709	285	fructose-bisphosphate aldolase; Provisional	88.18
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	88.13
PRK13533	487	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	88.13
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	88.07
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	88.05
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	87.96
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	87.88
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	87.87
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	87.82
PRK09490	1229	metH B12-dependent methionine synthase; Provisiona	87.7
TIGR01334	277	modD putative molybdenum utilization protein ModD.	87.63
TIGR01431	479	adm_rel adenosine deaminase-related growth factor.	87.58
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	87.55
PRK09057	380	coproporphyrinogen III oxidase; Provisional	87.5
PRK04147	293	N-acetylneuraminate lyase; Provisional	87.46
PRK14041	467	oxaloacetate decarboxylase; Provisional	87.41
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	87.39
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	87.13
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	87.06
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	86.99
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	86.95
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	86.91
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	86.71
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	86.69
PRK06582	390	coproporphyrinogen III oxidase; Provisional	86.66
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	86.51
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	86.4
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	86.36
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	86.33
PRK07084	321	fructose-bisphosphate aldolase; Provisional	86.27
PLN02433	345	uroporphyrinogen decarboxylase	86.2
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	86.1
PRK09206	470	pyruvate kinase; Provisional	86.02
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	85.94
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	85.66
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	85.63
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	85.62
PRK00115	346	hemE uroporphyrinogen decarboxylase; Validated	85.57
PRK14329	467	(dimethylallyl)adenosine tRNA methylthiotransferas	85.5
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	85.48
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	85.43
cd00288	480	Pyruvate_Kinase Pyruvate kinase (PK): Large allost	85.3
PRK06354	590	pyruvate kinase; Provisional	85.29
PLN02389	379	biotin synthase	85.22
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.2
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	85.19
TIGR02495	191	NrdG2 anaerobic ribonucleoside-triphosphate reduct	85.18
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	85.14
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	85.1
PRK09058	449	coproporphyrinogen III oxidase; Provisional	85.08
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	84.99
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	84.95
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	84.92
TIGR03820	417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	84.86
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	84.8
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	84.76
PRK09997	258	hydroxypyruvate isomerase; Provisional	84.73
PRK05985	391	cytosine deaminase; Provisional	84.71
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	84.7
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	84.7
PRK09856	275	fructoselysine 3-epimerase; Provisional	84.67
PRK14333	448	(dimethylallyl)adenosine tRNA methylthiotransferas	84.62
COG3142	241	CutC Uncharacterized protein involved in copper re	84.54
PLN02925	733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	84.53
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	84.37
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	84.35
TIGR00284	499	dihydropteroate synthase-related protein. This pro	84.31
PRK06252	339	methylcobalamin:coenzyme M methyltransferase; Vali	84.28
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	84.27
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	84.2
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	84.13
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	84.1
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	84.01
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	83.98
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	83.96
PLN02951	373	Molybderin biosynthesis protein CNX2	83.83
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	83.77
PRK08898	394	coproporphyrinogen III oxidase; Provisional	83.76

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=100.00  E-value=3.4e-75  Score=591.66  Aligned_cols=326  Identities=83%  Similarity=1.250  Sum_probs=308.2

Q ss_pred             CCccccccccccc-------cccCCCchhhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCC
Q 012949           90 GRNHKMFGSACDI-------YNSNCNDKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGL  162 (452)
Q Consensus        90 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv  162 (452)
                      |+.+.++|+....       |+|..+.-+.+.+.+|++++||++|+|+|+|||||+|.++..|++++|++|++.|+++||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV   82 (347)
T PLN02746          3 GSTSTVSGTLGSSWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGL   82 (347)
T ss_pred             cchhhhhhccccccchhhhccccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCC
Confidence            4555566655444       677777778899999999999999999999999999999999999999999999999999


Q ss_pred             CEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCC
Q 012949          163 PVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK  242 (452)
Q Consensus       163 ~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~  242 (452)
                      +.||+|+|++|+++||++|.+++++.++...+.++.+++++.+                          ++++|+++|++
T Consensus        83 ~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~--------------------------die~A~~~g~~  136 (347)
T PLN02746         83 PVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLK--------------------------GFEAAIAAGAK  136 (347)
T ss_pred             CEEEECCCcCcccccccccHHHHHHHHHhccCCceeEEcCCHH--------------------------HHHHHHHcCcC
Confidence            9999999999999999999999999998877788888887654                          99999999999


Q ss_pred             EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       243 ~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      .|++++++||.|++.|+|+|++|+++.+.+++++||++|++|+++|+++||||++++++++++.++++++.++|+++|+|
T Consensus       137 ~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l  216 (347)
T PLN02746        137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL  216 (347)
T ss_pred             EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHH
Q 012949          323 GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVV  402 (452)
Q Consensus       323 ~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv  402 (452)
                      +||+|+++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|++|||||||||||+||++||+|+
T Consensus       217 ~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv  296 (347)
T PLN02746        217 GDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVV  296 (347)
T ss_pred             cCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHH
Confidence            99999999999999999999999877899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949          403 YMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  441 (452)
Q Consensus       403 ~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~  441 (452)
                      ++|+.+|+++++|+++|.++++++++.+|+++|++....
T Consensus       297 ~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~  335 (347)
T PLN02746        297 YMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA  335 (347)
T ss_pred             HHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            999999999999999999999999999999999886544

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=100.00  E-value=1.7e-70  Score=546.91  Aligned_cols=287  Identities=64%  Similarity=1.041  Sum_probs=277.5

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      ||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+|+|++.|.++++..+.+.++.++.++++
T Consensus         1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~   80 (287)
T PRK05692          1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP   80 (287)
T ss_pred             CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence            37789999999999999999999999999999999999999999999999999999999988888887767788888887


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      +.+                          ++++|+++|++.|++++++||.|.+.|+|+|++++++++.+++++||++|+
T Consensus        81 ~~~--------------------------~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~  134 (287)
T PRK05692         81 NLK--------------------------GLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGV  134 (287)
T ss_pred             CHH--------------------------HHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence            654                          999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      .|+++|+++|+||++++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+
T Consensus       135 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~  214 (287)
T PRK05692        135 RVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQAL  214 (287)
T ss_pred             EEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997799999999999999


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ||+++|+++||++||+|++|||||||||||+||++||+++++|+.+|+++++|+++|.++++++++.+|+++|
T Consensus       215 AN~laA~~aG~~~id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~  287 (287)
T PRK05692        215 ANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP  287 (287)
T ss_pred             HHHHHHHHhCCCEEEEEccccCCCCCCCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999886

>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-68  Score=499.36  Aligned_cols=305  Identities=70%  Similarity=1.061  Sum_probs=297.3

Q ss_pred             hHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh
Q 012949          112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD  191 (452)
Q Consensus       112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~  191 (452)
                      .+.+.++.....|++|+|+++.+|||.|.++..+|++.|++++++|.+.|+..||.++|+||||+||++|..|++..+++
T Consensus         4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~   83 (316)
T KOG2368|consen    4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK   83 (316)
T ss_pred             hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence            46778888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHH
Q 012949          192 LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYR  271 (452)
Q Consensus       192 ~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~  271 (452)
                      .+++.+++|+||++                          +++.|+++|+.+|.+|-++||.|...|.||++||++.++.
T Consensus        84 ~~Gv~yPVLtPNlk--------------------------Gf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~  137 (316)
T KOG2368|consen   84 FPGVSYPVLTPNLK--------------------------GFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFM  137 (316)
T ss_pred             CCCccccccCcchh--------------------------hHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHH
Confidence            99999999999987                          9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE
Q 012949          272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA  351 (452)
Q Consensus       272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~  351 (452)
                      ++.+.|++++++|++|++++.|||.++...|+.+.++.+.++++||..|.|.||+|+.+|..+.+++..+.+.+|...|.
T Consensus       138 ~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LA  217 (316)
T KOG2368|consen  138 EVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLA  217 (316)
T ss_pred             HHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988999


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhC
Q 012949          352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       352 vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g  431 (452)
                      +|||||||+|+||.|.+++.|++.||.||.|||+||||+|.+||++||+++++|+.+|++|++|+.+|.++++++.+.+|
T Consensus       218 VH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~alg  297 (316)
T KOG2368|consen  218 VHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALG  297 (316)
T ss_pred             hhhhhhHHHHHHHHHHHHHhcceehhhhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccc
Q 012949          432 RPSGSKTAIAL  442 (452)
Q Consensus       432 ~~~p~~~pi~G  442 (452)
                      ++..++.+.+-
T Consensus       298 r~~~Skva~A~  308 (316)
T KOG2368|consen  298 RTTWSKVAQAM  308 (316)
T ss_pred             CCchhHHHHHH
Confidence            99988865543

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=100.00  E-value=1.2e-66  Score=516.21  Aligned_cols=274  Identities=59%  Similarity=0.957  Sum_probs=264.2

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      |+|+|||||+|.++..|++++|++|++.|+++||++||+|+|++|+++|++.|.++++..+....++++.+|+++.+   
T Consensus         1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~---   77 (274)
T cd07938           1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLR---   77 (274)
T ss_pred             CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHH---
Confidence            68999999999999999999999999999999999999999999999999999988888777666788988887654   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                                             ++++|+++|++.|++++++||.|++.|+|+|++++++++.+++++||+.|++|++++
T Consensus        78 -----------------------dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i  134 (274)
T cd07938          78 -----------------------GAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYV  134 (274)
T ss_pred             -----------------------HHHHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence                                   999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      +++|+||++++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|
T Consensus       135 ~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA  214 (274)
T cd07938         135 STAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAA  214 (274)
T ss_pred             EeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949          369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +++||++||+|++|||+||||++|+||++||+++++|+.+|+++++|+++|.++++++++
T Consensus       215 ~~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~  274 (274)
T cd07938         215 LEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDLDKLLAAARWISE  274 (274)
T ss_pred             HHhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999999999999863

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=100.00  E-value=2.7e-64  Score=519.99  Aligned_cols=284  Identities=24%  Similarity=0.333  Sum_probs=259.1

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEe
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLT  201 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~  201 (452)
                      |++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|.       +.+.+ +.++.+.+ ..+.++.+++
T Consensus         2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~   74 (378)
T PRK11858          2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPA-------VSEDEKEAIKAIAKLGLNASILALN   74 (378)
T ss_pred             CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCC-------cChHHHHHHHHHHhcCCCeEEEEEc
Confidence            567999999999999999999999999999999999999999999864       33332 44555543 2234444444


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      +..                         .+++++|+++|++.|++++++||.|++.++|+|++++++++.+++++||+.|
T Consensus        75 r~~-------------------------~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G  129 (378)
T PRK11858         75 RAV-------------------------KSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHG  129 (378)
T ss_pred             ccC-------------------------HHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence            332                         2499999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ++|.      |++|+.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ +++|++|+|||+|||
T Consensus       130 ~~v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA  202 (378)
T PRK11858        130 LYVS------FSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMA  202 (378)
T ss_pred             CeEE------EEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHH
Confidence            9887      456789999999999999999999999999999999999999999999999998 468999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCccc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAI  440 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi  440 (452)
                      +||+++|+++||++||+|++||||      |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++|+
T Consensus       203 ~AN~laAv~aGa~~vd~tv~GlGe------raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pi  276 (378)
T PRK11858        203 TANALAGIEAGAKQVHTTVNGLGE------RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAI  276 (378)
T ss_pred             HHHHHHHHHcCCCEEEEeeccccc------cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCcc
Confidence            999999999999999999999999      9999999999999994 899999999999999999999999999999999


Q ss_pred             ccchhhhhccCC
Q 012949          441 ALNRIAADASKI  452 (452)
Q Consensus       441 ~G~~vf~h~Sgi  452 (452)
                      +|+++|+|+|||
T Consensus       277 vG~~~F~h~sGi  288 (378)
T PRK11858        277 VGENAFAHESGI  288 (378)
T ss_pred             ccchhhhhhccc
Confidence            999999999998

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=100.00  E-value=1.4e-63  Score=512.68  Aligned_cols=282  Identities=23%  Similarity=0.289  Sum_probs=259.8

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEecc
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLTPN  203 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~~~  203 (452)
                      .|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|.       +.+.+ +.++.+.+ .++.++.++++.
T Consensus         1 ~v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~-------~~~~~~e~i~~i~~~~~~~~i~~~~r~   73 (365)
T TIGR02660         1 PVIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPA-------MGEEERAVIRAIVALGLPARLMAWCRA   73 (365)
T ss_pred             CcEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-------CCHHHHHHHHHHHHcCCCcEEEEEcCC
Confidence            3789999999999999999999999999999999999999999864       33322 44555543 356677776643


Q ss_pred             hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949          204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  283 (452)
Q Consensus       204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~  283 (452)
                      ..                         +++++|+++|++.|++++++||.|++.++|+|++++++++.+++++||++|++
T Consensus        74 ~~-------------------------~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~  128 (365)
T TIGR02660        74 RD-------------------------ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLF  128 (365)
T ss_pred             CH-------------------------HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCE
Confidence            22                         49999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949          284 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP  363 (452)
Q Consensus       284 V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A  363 (452)
                      |.      |++++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|||+|
T Consensus       129 v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~A  201 (365)
T TIGR02660       129 VS------VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATA  201 (365)
T ss_pred             EE------EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHH
Confidence            76      5678999999999999999999999999999999999999999999999999986 6899999999999999


Q ss_pred             HHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHH-HcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCccccc
Q 012949          364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML-SGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIAL  442 (452)
Q Consensus       364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L-~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G  442 (452)
                      |+++|+++||++||+|++||||      |+||++||+|+++| ..+|+++++|+++|.++++++++.+|+++|+++|++|
T Consensus       202 NalaA~~aGa~~vd~tl~GiGe------raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG  275 (365)
T TIGR02660       202 NTLAAVRAGATHVNTTVNGLGE------RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVG  275 (365)
T ss_pred             HHHHHHHhCCCEEEEEeecccc------ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccc
Confidence            9999999999999999999999      99999999999999 5589999999999999999999999999999999999


Q ss_pred             chhhhhccCC
Q 012949          443 NRIAADASKI  452 (452)
Q Consensus       443 ~~vf~h~Sgi  452 (452)
                      +|+|+|+|||
T Consensus       276 ~~~f~h~sGi  285 (365)
T TIGR02660       276 ESVFTHESGI  285 (365)
T ss_pred             HhHHHhccch
Confidence            9999999997

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=2.4e-63  Score=530.47  Aligned_cols=288  Identities=24%  Similarity=0.327  Sum_probs=264.1

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      ||++|+|+|||||||+|.+++.|++++|++|++.|+++||++||+|||.+..     .|.+.+.+..+...+.++.+|++
T Consensus         1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r   75 (513)
T PRK00915          1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR   75 (513)
T ss_pred             CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence            4778999999999999999999999999999999999999999999975321     24444433334556788888886


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHH----HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~----~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      ...                         +++++++    ++|+++|++|.++||.|++.++|+|++++++++.+++++||
T Consensus        76 ~~~-------------------------~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak  130 (513)
T PRK00915         76 AVK-------------------------KDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYAR  130 (513)
T ss_pred             CCH-------------------------HHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            543                         3666666    78999999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeC
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLH  355 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~H  355 (452)
                      ++|++|.      |++||.+|++++|+.++++.+.++|+++|+||||+|+++|.+++++|+.+++++|.   ++|++|+|
T Consensus       131 ~~g~~v~------f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~H  204 (513)
T PRK00915        131 SYTDDVE------FSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCH  204 (513)
T ss_pred             HCCCeEE------EEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEec
Confidence            9999986      77899999999999999999999999999999999999999999999999999985   78999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC----CCCCCCChhhHHHHHHHHHHHhC
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~----Gi~t~iDl~~L~~la~~v~~~~g  431 (452)
                      ||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+..    |+++++|+++|.++++++++++|
T Consensus       205 ND~GlAvANslaAv~aGa~~Vd~Tv~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~  278 (513)
T PRK00915        205 NDLGLAVANSLAAVEAGARQVECTINGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTG  278 (513)
T ss_pred             CCCCHHHHHHHHHHHhCCCEEEEEeecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999      99999999999999753    99999999999999999999999


Q ss_pred             CCCCCCcccccchhhhhccCC
Q 012949          432 RPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       432 ~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +++|+++|++|+++|+|+|||
T Consensus       279 ~~~~~~~PivG~~aF~h~sGi  299 (513)
T PRK00915        279 MPVQPNKAIVGANAFAHESGI  299 (513)
T ss_pred             CCCCCCCCccChhHHHhccch
Confidence            999999999999999999997

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=100.00  E-value=2.4e-63  Score=525.73  Aligned_cols=293  Identities=22%  Similarity=0.313  Sum_probs=257.4

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc--CCceeEE
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE--GARLPVL  200 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~--~~~l~~l  200 (452)
                      |++|+|+|||||||+|.+++.|+.++|++|++.|+++||++||+|||...   |+  +.+. ++.+.. ..  .....++
T Consensus        82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s---~~--e~e~-i~~i~~~~~~~~~~~~~l  155 (503)
T PLN03228         82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSS---EE--EFEA-VKTIAKTVGNEVDEETGY  155 (503)
T ss_pred             CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---HH--HHHH-HHHHHHhccccccccccc
Confidence            67899999999999999999999999999999999999999999997532   21  2222 333322 11  1111111


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      .++       +.+|.|+..           +++++|+++    |+++|++++++||.|++.++|+|++++++++.+++++
T Consensus       156 ~~~-------i~a~~R~~~-----------~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~  217 (503)
T PLN03228        156 VPV-------ICGIARCKK-----------RDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRY  217 (503)
T ss_pred             ceE-------EeeecccCH-----------hhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            221       334555543           478888877    7789999999999999999999999999999999999


Q ss_pred             HHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC---CccEEE
Q 012949          277 AKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAV  352 (452)
Q Consensus       277 Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p---~~~l~v  352 (452)
                      ||++|+. |.      |++||++|+|++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++|   .++|++
T Consensus       218 Ak~~G~~~v~------f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~  291 (503)
T PLN03228        218 AKSLGFHDIQ------FGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSV  291 (503)
T ss_pred             HHHcCCceEE------eccccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEe
Confidence            9999986 44      8899999999999999999999999999999999999999999999999999886   467999


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc------CCCCCCCChhhHHHHHHHH
Q 012949          353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFI  426 (452)
Q Consensus       353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~------~Gi~t~iDl~~L~~la~~v  426 (452)
                      |+|||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.      +|+++++|+++|.++++++
T Consensus       292 H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V  365 (503)
T PLN03228        292 HCHNDLGLATANTIAGICAGARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMV  365 (503)
T ss_pred             cccCCcChHHHHHHHHHHhCCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999999987      4889999999999999999


Q ss_pred             HHHhCCCCCCCcccccchhhhhccCC
Q 012949          427 NKHLGRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       427 ~~~~g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      ++++|+++|+++|++|+|+|+|+|||
T Consensus       366 ~~~~g~~i~~~kPivG~naF~heSGI  391 (503)
T PLN03228        366 QEYTGMYVQPHKPIVGANCFVHESGI  391 (503)
T ss_pred             HHHhCCCCCCCCCcccHHHHHhccch
Confidence            99999999999999999999999997

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=100.00  E-value=5.2e-63  Score=508.00  Aligned_cols=282  Identities=24%  Similarity=0.308  Sum_probs=257.8

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchh
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLK  205 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~  205 (452)
                      |.|+|||||||+|+++..|++++|++|++.|+++||+.||+|||++++     .+ .+.++.+. ...+.++.++++.. 
T Consensus         1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~-----~~-~e~i~~i~~~~~~~~v~~~~r~~-   73 (363)
T TIGR02090         1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE-----GE-FEAIKKISQEGLNAEICSLARAL-   73 (363)
T ss_pred             CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HH-HHHHHHHHhcCCCcEEEEEcccC-
Confidence            679999999999999999999999999999999999999999987653     12 22333333 23456666666432 


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                                              .+++++|+++|++.|++|+++||.|++.++|+|++++++++.+++++||++|++|.
T Consensus        74 ------------------------~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~  129 (363)
T TIGR02090        74 ------------------------KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVE  129 (363)
T ss_pred             ------------------------HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE
Confidence                                    24999999999999999999999999999999999999999999999999999987


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  365 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa  365 (452)
                      +++      ++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+
T Consensus       130 ~~~------eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~  202 (363)
T TIGR02090       130 FSA------EDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANS  202 (363)
T ss_pred             EEE------eecCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHH
Confidence            443      4678999999999999999999999999999999999999999999999988 689999999999999999


Q ss_pred             HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccch
Q 012949          366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNR  444 (452)
Q Consensus       366 LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~  444 (452)
                      ++|+++||++||+|++||||      |+||++||+|+++|+. +|+++++|+++|.++++++++.+|+++|+++|++|++
T Consensus       203 laA~~aGa~~vd~s~~GlGe------raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~  276 (363)
T TIGR02090       203 IAGVKAGAEQVHVTVNGIGE------RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGEN  276 (363)
T ss_pred             HHHHHCCCCEEEEEeecccc------ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHH
Confidence            99999999999999999999      9999999999999998 7999999999999999999999999999999999999


Q ss_pred             hhhhccCC
Q 012949          445 IAADASKI  452 (452)
Q Consensus       445 vf~h~Sgi  452 (452)
                      +|+|+|||
T Consensus       277 ~f~h~sGi  284 (363)
T TIGR02090       277 AFAHESGI  284 (363)
T ss_pred             HHHHhcch
Confidence            99999997

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=100.00  E-value=1.4e-62  Score=522.11  Aligned_cols=285  Identities=25%  Similarity=0.359  Sum_probs=262.6

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchh
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLK  205 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~  205 (452)
                      +|+|+|||||||+|.+++.|++++|++|++.|+++||++||+|||++++     .|.+.+....+...+.++.+|++..+
T Consensus         1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~   75 (494)
T TIGR00973         1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE   75 (494)
T ss_pred             CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence            4899999999999999999999999999999999999999999998654     45555543335556778888876544


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                                               +++++++++    +.++|++|.++||.|++.++++|++++++++.+++++||++|
T Consensus        76 -------------------------~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g  130 (494)
T TIGR00973        76 -------------------------KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFT  130 (494)
T ss_pred             -------------------------HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC
Confidence                                     377777766    778999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeCCCc
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDTY  358 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~Hnd~  358 (452)
                      ..|.      |++||++|++++++.++++.+.++|+++|+||||+|+++|.+++++|+.+++++|.   ++|++|+|||+
T Consensus       131 ~~v~------f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~  204 (494)
T TIGR00973       131 DDVE------FSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDL  204 (494)
T ss_pred             CeEE------EEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCC
Confidence            9876      77899999999999999999999999999999999999999999999999999874   57999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPS  434 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g~~~  434 (452)
                      |||+||+++|+++||++||+|++||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++
T Consensus       205 GlAvANalaAv~aGa~~vd~tv~GlGE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v  278 (494)
T TIGR00973       205 GLAVANSLAAVQNGARQVECTINGIGE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPV  278 (494)
T ss_pred             ChHHHHHHHHHHhCCCEEEEEeecccc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999999999      9999999999999974    489999999999999999999999999


Q ss_pred             CCCcccccchhhhhccCC
Q 012949          435 GSKTAIALNRIAADASKI  452 (452)
Q Consensus       435 p~~~pi~G~~vf~h~Sgi  452 (452)
                      |+++|++|+++|+|+|||
T Consensus       279 ~~~~PivG~~aF~h~sGi  296 (494)
T TIGR00973       279 QPNKAIVGDNAFAHESGI  296 (494)
T ss_pred             CCCCCcccHhHHHhccch
Confidence            999999999999999997

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>PRK09389 (R)-citramalate synthase; Provisional

Probab=100.00  E-value=2e-62  Score=519.91  Aligned_cols=283  Identities=23%  Similarity=0.322  Sum_probs=259.2

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecch
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNL  204 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~  204 (452)
                      +|+|+|||||||+|.++..|++++|++|++.|+++||++||+|||++++     .|.+ .+..+. ...+.++.+|++..
T Consensus         2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e-~v~~i~~~~~~~~i~a~~r~~   75 (488)
T PRK09389          2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GERE-AIKAVTDEGLNAEICSFARAV   75 (488)
T ss_pred             ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHH-HHHHHHhcCCCcEEEeecccC
Confidence            4899999999999999999999999999999999999999999997654     2333 333333 22356666666543


Q ss_pred             hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949          205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  284 (452)
Q Consensus       205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V  284 (452)
                      .                         +++++++++|++.|+++.++||.|++.++++|++++++.+.+++++||+.|++|
T Consensus        76 ~-------------------------~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v  130 (488)
T PRK09389         76 K-------------------------VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIV  130 (488)
T ss_pred             H-------------------------HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence            2                         489999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          285 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       285 ~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      +.      +.++.++++++|+.++++.+.++|+++|+||||+|+++|.+++++++.++++++ ++|++|+|||+|||+||
T Consensus       131 ~~------~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvAN  203 (488)
T PRK09389        131 EL------SGEDASRADLDFLKELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVAN  203 (488)
T ss_pred             EE------EEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHH
Confidence            74      345788999999999999999999999999999999999999999999999877 58999999999999999


Q ss_pred             HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccc
Q 012949          365 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALN  443 (452)
Q Consensus       365 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~  443 (452)
                      +++|+++||++||+|++||||      |+||++||+|+++|+. +|+++++|+++|.++++++++++|+++|+++|++|+
T Consensus       204 alaAv~aGa~~Vd~Ti~GiGE------RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~  277 (488)
T PRK09389        204 TLAALAAGADQVHVTINGIGE------RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGE  277 (488)
T ss_pred             HHHHHHcCCCEEEEEcccccc------cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccH
Confidence            999999999999999999999      9999999999999998 599999999999999999999999999999999999


Q ss_pred             hhhhhccCC
Q 012949          444 RIAADASKI  452 (452)
Q Consensus       444 ~vf~h~Sgi  452 (452)
                      ++|+|+|||
T Consensus       278 ~aF~h~sGi  286 (488)
T PRK09389        278 NAFAHESGI  286 (488)
T ss_pred             hHHHhcchh
Confidence            999999997

>PLN02321 2-isopropylmalate synthase

Probab=100.00  E-value=3.4e-62  Score=527.62  Aligned_cols=292  Identities=21%  Similarity=0.326  Sum_probs=258.3

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHH-HhccC-CceeEE
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAV-RDLEG-ARLPVL  200 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i-~~~~~-~~l~~l  200 (452)
                      |++|+|.|+|||||+|.++..|++++|++|++.|+++||++||+||| ++|+      |.+. ++.+ +.+.+ ....++
T Consensus        84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp~------D~e~-vr~i~~~~~~~v~~~~~  156 (632)
T PLN02321         84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASPD------DLEA-VKTIAKEVGNEVDEDGY  156 (632)
T ss_pred             CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCcc------HHHH-HHHHHHhcccCCCcccc
Confidence            78899999999999999999999999999999999999999999996 5654      5555 4444 33222 111122


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      ++       ++.+|.++..           +++++++++  ++  .+|++|+++||.|++.|+|+|++++++++.+++++
T Consensus       157 v~-------~i~a~~ra~~-----------~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~  218 (632)
T PLN02321        157 VP-------VICGLSRCNK-----------KDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKY  218 (632)
T ss_pred             ce-------eeeeehhccH-----------HhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            21       2334555432           488888887  33  48999999999999999999999999999999999


Q ss_pred             HHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEE
Q 012949          277 AKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAV  352 (452)
Q Consensus       277 Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~v  352 (452)
                      ||++|.. |.      |++||++|++++|+.++++++.++||++|+|+||+|+++|.+++++|+.+++++|.   ++|++
T Consensus       219 Ak~~G~~~v~------fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~v  292 (632)
T PLN02321        219 ARSLGCEDVE------FSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIIST  292 (632)
T ss_pred             HHHcCCceEE------EecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEE
Confidence            9999984 44      78999999999999999999999999999999999999999999999999999874   46999


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc------CCCCCCCChhhHHHHHHHH
Q 012949          353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG------LGVETNVDLRKLMLAGDFI  426 (452)
Q Consensus       353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~------~Gi~t~iDl~~L~~la~~v  426 (452)
                      |||||+|||+||+++|+++||++||+||+||||      |+||++||+|+++|+.      +|+++++|+++|.++++++
T Consensus       293 H~HND~GlAvANslaAv~AGA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V  366 (632)
T PLN02321        293 HCQNDLGLSTANTLAGAHAGARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMV  366 (632)
T ss_pred             EeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHH
Confidence            999999999999999999999999999999999      9999999999999985      4789999999999999999


Q ss_pred             HHHhCCCCCCCcccccchhhhhccCC
Q 012949          427 NKHLGRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       427 ~~~~g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      ++++|+++|+++|++|+|+|+|+|||
T Consensus       367 ~~~~g~~v~~~kPiVG~naFaheSGI  392 (632)
T PLN02321        367 SEYTGMQVQPHKAIVGANAFAHESGI  392 (632)
T ss_pred             HHHhCcCCCCCcccccccceehhcCc
Confidence            99999999999999999999999998

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=4.9e-62  Score=505.16  Aligned_cols=285  Identities=28%  Similarity=0.363  Sum_probs=255.1

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hcc---CCceeEE
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLE---GARLPVL  200 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~---~~~l~~l  200 (452)
                      ++|+|.|+|||||+|+++..|+.++|++|++.|+++|+++||+|+|+++++.+++      .+.+. ...   .+++.++
T Consensus         1 ~~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~~~------~~~i~~~~~~~~~~~~~~~   74 (409)
T COG0119           1 KKVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEF------VRAIAEKAGLFICALIAAL   74 (409)
T ss_pred             CCcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhHHH------HHHHHHhcCcccchhhhhh
Confidence            3689999999999999999999999999999999999999999999877644322      22222 111   2222222


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      .+..                         .+++++++++|+++|++|.++||.|++.++++|+++.++.+.+++++||++
T Consensus        75 ~~~~-------------------------~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~  129 (409)
T COG0119          75 ARAI-------------------------KRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDH  129 (409)
T ss_pred             HHhH-------------------------HhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            2222                         249999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcC
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG  359 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~G  359 (452)
                      |+++++      ++++.++++++++.++++.+.++||++|+|+||+|+++|.+++++++.+++++| ..+|++|||||+|
T Consensus       130 g~~~~~------~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G  203 (409)
T COG0119         130 GLEVRF------SAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLG  203 (409)
T ss_pred             CCeEEE------EeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcc
Confidence            988874      456778999999999999999999999999999999999999999999999998 4789999999999


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc---CCCCCCCChhhHHHHHHHHHHHhCCCCCC
Q 012949          360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGS  436 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~---~Gi~t~iDl~~L~~la~~v~~~~g~~~p~  436 (452)
                      ||+||+++|+++||++||+||+|+||      |+||+++|+++++|..   +|+++++|+.+|.++++++++.+|.++|+
T Consensus       204 ~AvANslaAv~aGa~~v~~TvnGiGE------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~  277 (409)
T COG0119         204 MAVANSLAAVEAGADQVEGTVNGIGE------RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPP  277 (409)
T ss_pred             hHHHHHHHHHHcCCcEEEEeccccee------ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCC
Confidence            99999999999999999999999999      9999999999976653   67899999999999999999999999999


Q ss_pred             CcccccchhhhhccCC
Q 012949          437 KTAIALNRIAADASKI  452 (452)
Q Consensus       437 ~~pi~G~~vf~h~Sgi  452 (452)
                      ++|++|+|+|+|+|||
T Consensus       278 n~pivG~naFah~sGI  293 (409)
T COG0119         278 NKPIVGENAFAHESGI  293 (409)
T ss_pred             CCCchhhHHHHhhcch
Confidence            9999999999999997

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=2.5e-61  Score=479.51  Aligned_cols=274  Identities=22%  Similarity=0.282  Sum_probs=253.6

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHH-HHCCCCEEEEecC-CCC---CcccccCCHHHHHHHHHhccCCceeEEecch
Q 012949          130 VEVGPRDGLQNEKNTVPTGVKVELIRRL-VSSGLPVVEATSF-VSP---KWVPQLADARDVMEAVRDLEGARLPVLTPNL  204 (452)
Q Consensus       130 ~D~TLRDG~Q~~~~~~~~~~k~~i~~~L-~~~Gv~~IEvG~~-~s~---~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~  204 (452)
                      +|+|||||+|.++..|++++|++|++.| +++||+.||+|+| ++|   +++|++.|..++...+   .+.++.+|+|+.
T Consensus         1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~~---~~~~~~a~~~~~   77 (280)
T cd07945           1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGLL---DRIEVLGFVDGD   77 (280)
T ss_pred             CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhccc---cCcEEEEecCcH
Confidence            5999999999999999999999999997 7889999999999 687   6677765543333222   256777777764


Q ss_pred             hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949          205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  284 (452)
Q Consensus       205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V  284 (452)
                      +                          ++++|+++|++.|++++++||.|++.|+|+|++++++++.+++++||++|++|
T Consensus        78 ~--------------------------~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v  131 (280)
T cd07945          78 K--------------------------SVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEV  131 (280)
T ss_pred             H--------------------------HHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEE
Confidence            4                          89999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          285 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       285 ~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      +++++. |+||.  +++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||
T Consensus       132 ~~~~~d-~~~~~--r~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN  208 (280)
T cd07945         132 NIYLED-WSNGM--RDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVAN  208 (280)
T ss_pred             EEEEEe-CCCCC--cCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHH
Confidence            999998 88876  789999999999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949          365 ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  441 (452)
Q Consensus       365 aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~  441 (452)
                      +++|+++||++||+|++||||      |+||++||+++++|+. +|+++++|+++|.++++++++++|+++|+++||+
T Consensus       209 ~laA~~aGa~~vd~s~~GlGe------~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv  280 (280)
T cd07945         209 VLAAVKAGIKGLHTTVNGLGE------RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV  280 (280)
T ss_pred             HHHHHHhCCCEEEEecccccc------cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence            999999999999999999999      9999999999999964 8999999999999999999999999999999986

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=100.00  E-value=6.7e-61  Score=512.14  Aligned_cols=293  Identities=19%  Similarity=0.241  Sum_probs=261.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh--ccCCceeE
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD--LEGARLPV  199 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~--~~~~~l~~  199 (452)
                      +|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||. +|.      |. +.++.+.+  +.++++.+
T Consensus         2 ~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~~------d~-~~~~~i~~~~l~~~~i~~   74 (524)
T PRK12344          2 MMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DT-EFFKRAKELKLKHAKLAA   74 (524)
T ss_pred             CCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCChh------HH-HHHHHHHHhCCCCcEEEE
Confidence            5778999999999999999999999999999999999999999999975 432      32 34555543  34677777


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      |.+..+..+.      .           ....++++++++|++.|++|.++||.|++.++|+|++++++++.+++++||+
T Consensus        75 ~~~~~~~~i~------~-----------~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~  137 (524)
T PRK12344         75 FGSTRRAGVS------A-----------EEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKA  137 (524)
T ss_pred             EeeccccCCC------c-----------ccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            7754331110      0           0123789999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEeeecCC---CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          280 LSIPVRGYVSCVVGCP---VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p---~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      +|++|+      |+++   ++++++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++ .++|++|+||
T Consensus       138 ~G~~v~------~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HN  210 (524)
T PRK12344        138 HGREVI------FDAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHN  210 (524)
T ss_pred             cCCeEE------EccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECC
Confidence            999987      5556   67799999999999999999999999999999999999999999999998 4689999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CC--CCCCCChhhHHHHHHHHHHHhCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LG--VETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~G--i~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                      |+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+. +|  ++|++|+++|.++++++++++|++
T Consensus       211 D~GlA~ANslaAi~aGa~~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~  284 (524)
T PRK12344        211 DSGCAVANSLAAVEAGARQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLA  284 (524)
T ss_pred             CCChHHHHHHHHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999999      9999999999999975 57  458999999999999999999999


Q ss_pred             CCCCcccccchhhhhccCC
Q 012949          434 SGSKTAIALNRIAADASKI  452 (452)
Q Consensus       434 ~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +|+++|++|+|+|+|+|||
T Consensus       285 v~~~~pivG~~~F~h~SGi  303 (524)
T PRK12344        285 PDPHQPYVGASAFAHKGGI  303 (524)
T ss_pred             CCCCCCeECcchhhhhccc
Confidence            9999999999999999998

>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type

Probab=100.00  E-value=6.1e-61  Score=515.72  Aligned_cols=294  Identities=17%  Similarity=0.169  Sum_probs=265.9

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh--c-cCCceeE
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--L-EGARLPV  199 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~--~-~~~~l~~  199 (452)
                      +.+.+.|+|+|||||+|.++..|++++|++|++.|+++||++||+|||++.   +  .|.+++.+.++.  + .++++.+
T Consensus        23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s---~--~D~e~v~~i~~~~l~~~~~~i~a   97 (564)
T TIGR00970        23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS---Q--TDFDFVREIIEQGAIPDDVTIQV   97 (564)
T ss_pred             cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhcCCCCCcEEEE
Confidence            567799999999999999999999999999999999999999999976543   1  577777777765  2 3678999


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      |+++++                         .++++++++  ++  +.|++|.++||.|++.++|+|++++++.+.++++
T Consensus        98 l~~~~~-------------------------~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~  152 (564)
T TIGR00970        98 LTQSRE-------------------------ELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTK  152 (564)
T ss_pred             EcCCch-------------------------hhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999876                         256666665  44  4899999999999999999999999999999999


Q ss_pred             HHHhCCCcEEEEE----EeeecCCCCCCCCHHHHHHHHHHHHHCCc------CEEEEcCCcCCCcHHHHHHHHHHHHHhC
Q 012949          276 AAKVLSIPVRGYV----SCVVGCPVEGAIPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       276 ~Ak~~G~~V~~~l----~~~~g~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~~v~~li~~l~~~~  345 (452)
                      +||++|..+..++    -+.|+.+|.+|++++++.++++.+.++|+      ++|+|+||+|+++|.+++++|+.+++++
T Consensus       153 ~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~  232 (564)
T TIGR00970       153 LVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNI  232 (564)
T ss_pred             HHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhc
Confidence            9999987654332    34477888899999999999999999987      4999999999999999999999999988


Q ss_pred             CC---ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHH
Q 012949          346 PV---EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA  422 (452)
Q Consensus       346 p~---~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~l  422 (452)
                      |.   ++|++|||||+|||+||+++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++
T Consensus       233 ~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~  306 (564)
T TIGR00970       233 AEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEI  306 (564)
T ss_pred             CcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence            74   45999999999999999999999999999999999999      9999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcccccchhhhhccCC
Q 012949          423 GDFINKHLGRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       423 a~~v~~~~g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      ++++++++|+++|+++|++|+++|+|+|||
T Consensus       307 s~~v~~~~~~~i~~~~PivG~~aF~h~SGi  336 (564)
T TIGR00970       307 RRTVEYCNKIPVHERHPYGGDLVYTAFSGS  336 (564)
T ss_pred             HHHHHHHhCCCCCCCCCchhhhHhhhccch
Confidence            999999999999999999999999999997

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=100.00  E-value=1.1e-60  Score=510.15  Aligned_cols=295  Identities=18%  Similarity=0.196  Sum_probs=260.1

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHH-hccCCceeEEecc
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR-DLEGARLPVLTPN  203 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~  203 (452)
                      .|+|+|||||||+|.++..|++++|++|++.|+++||++||+|||. +|+      |.+.+.+..+ .+.+.++.+|++.
T Consensus         1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~~------d~~~v~~i~~~~~~~~~i~~~~r~   74 (526)
T TIGR00977         1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANPK------DVQFFWQLKEMNFKNAKIVAFCST   74 (526)
T ss_pred             CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCChH------HHHHHHHHHHhCCCCcEEEEEeee
Confidence            3899999999999999999999999999999999999999999874 554      3333333332 2335778888754


Q ss_pred             hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949          204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  283 (452)
Q Consensus       204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~  283 (452)
                      .+..+.       .          -...++++++++|.+.|++|.++||.|++.++++|++++++++.+++++||++|.+
T Consensus        75 ~r~~~~-------~----------~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~  137 (526)
T TIGR00977        75 RRPHKK-------V----------EEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDE  137 (526)
T ss_pred             cCCCCC-------C----------chHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe
Confidence            331100       0          01237899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949          284 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP  363 (452)
Q Consensus       284 V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A  363 (452)
                      |....+..|   |++|++++|+.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|..+|++|||||+|||+|
T Consensus       138 V~~~~e~f~---D~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvA  214 (526)
T TIGR00977       138 VIYDAEHFF---DGYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVA  214 (526)
T ss_pred             EEEEeeeee---ecccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHH
Confidence            874444322   66799999999999999999999999999999999999999999999999976699999999999999


Q ss_pred             HHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCC--CCCChhhHHHHHHHHHHHhCCCCCCCccc
Q 012949          364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVE--TNVDLRKLMLAGDFINKHLGRPSGSKTAI  440 (452)
Q Consensus       364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~--t~iDl~~L~~la~~v~~~~g~~~p~~~pi  440 (452)
                      |+++|+++||++||+|++||||      |+||++||+++++|.. +|++  +++|+++|.++++++++++|+++|+++|+
T Consensus       215 NslaAv~AGA~~Vd~TinGiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pi  288 (526)
T TIGR00977       215 NSLLAVEAGATMVQGTINGYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPY  288 (526)
T ss_pred             HHHHHHHhCCCEEEEecccccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCc
Confidence            9999999999999999999999      9999999999999985 6776  79999999999999999999999999999


Q ss_pred             ccchhhhhccCC
Q 012949          441 ALNRIAADASKI  452 (452)
Q Consensus       441 ~G~~vf~h~Sgi  452 (452)
                      +|+|+|+|+|||
T Consensus       289 vG~~aF~h~sGi  300 (526)
T TIGR00977       289 VGRSAFAHKGGV  300 (526)
T ss_pred             cCcceeeeeccc
Confidence            999999999998

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>PRK03739 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=1.4e-60  Score=511.74  Aligned_cols=292  Identities=18%  Similarity=0.144  Sum_probs=260.7

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHH-Hh-c--cCCce
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RD-L--EGARL  197 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i-~~-~--~~~~l  197 (452)
                      +.+++.|+|+|||||+|.++..|++++|++|++.|+++||++||+|||+       +.+.+ +.++.+ +. +  .+..+
T Consensus        27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~-------~s~~e~e~v~~i~~~~~~~~~~~i   99 (552)
T PRK03739         27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPS-------ASQTDFDFVRELIEEGLIPDDVTI   99 (552)
T ss_pred             cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC-------cChHHHHHHHHHHHhcCCCCCCEE
Confidence            6677999999999999999999999999999999999999999999854       44443 555555 33 2  36788


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CC--CEEEEEecCChHHHhhhcCCCHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GA--KEVAIFASASEAFSKSNINCSIEDSLVRYRAV  273 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi--~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~  273 (452)
                      .+|+|+++                         .++++|+++  ++  +.|++|+++||.|++.++|+|++++++++.++
T Consensus       100 ~~l~r~~~-------------------------~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~  154 (552)
T PRK03739        100 QVLTQARE-------------------------HLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDG  154 (552)
T ss_pred             EEEeccch-------------------------hHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHH
Confidence            89998876                         367777765  33  47999999999999999999999999999999


Q ss_pred             HHHHHhCCCcEE-EEEEeeecCCCCCCCCHHHHHHHHHHHHH---CCcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          274 AHAAKVLSIPVR-GYVSCVVGCPVEGAIPPSKVAYVAKELHD---MGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       274 v~~Ak~~G~~V~-~~l~~~~g~p~~~r~d~e~l~~~a~~l~~---~Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +++||++|.... ..+.+.|+.+|++|++++|+.++++.+.+   +|++   +|.|+||+|+++|.+++++++.+++.+|
T Consensus       155 v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~  234 (552)
T PRK03739        155 ARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLA  234 (552)
T ss_pred             HHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCC
Confidence            999999985321 11334478999999999999999999886   4655   5999999999999999999999999987


Q ss_pred             ---CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHH
Q 012949          347 ---VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG  423 (452)
Q Consensus       347 ---~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la  423 (452)
                         .++|++|||||+|||+||+++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.+++
T Consensus       235 ~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s  308 (552)
T PRK03739        235 RRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIR  308 (552)
T ss_pred             cccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence               678999999999999999999999999999999999999      99999999999999888999999999999999


Q ss_pred             HHHHHHhCCCCCCCcccccchhhhhccCC
Q 012949          424 DFINKHLGRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       424 ~~v~~~~g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +++++++|+++|+++|++|+|+|+|+|||
T Consensus       309 ~~v~~~~~~~i~~~~PivG~~aF~hesGi  337 (552)
T PRK03739        309 RTVEYCNQLPVHPRHPYAGDLVFTAFSGS  337 (552)
T ss_pred             HHHHHHhCCCCCCCCCccchhhhhhccch
Confidence            99999999999999999999999999997

>PRK14847 hypothetical protein; Provisional

Probab=100.00  E-value=6.6e-59  Score=468.21  Aligned_cols=294  Identities=16%  Similarity=0.139  Sum_probs=248.1

Q ss_pred             hHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh
Q 012949          112 IRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD  191 (452)
Q Consensus       112 ~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~  191 (452)
                      -|.-..|.+..   ...|+|+|||||+|.++..|+.++|++|++.|+++||+.||+|||+...     .|.+.+.+.++.
T Consensus        21 ~~~w~~~~~~~---~p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~   92 (333)
T PRK14847         21 ERAWPARRPAA---APIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDE   92 (333)
T ss_pred             cCCCcccccCC---CCceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHh
Confidence            34444444333   3459999999999999999999999999999999999999999986432     233333333333


Q ss_pred             c---cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHH
Q 012949          192 L---EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIE  264 (452)
Q Consensus       192 ~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e  264 (452)
                      .   .++++.+|++.++                         +++++++++    +.++|++|+++||.|++.++|+|++
T Consensus        93 ~~~~~~~~i~~~~r~~~-------------------------~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~  147 (333)
T PRK14847         93 RRIPDDVTIEALTQSRP-------------------------DLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRA  147 (333)
T ss_pred             CCCCCCcEEEEEecCcH-------------------------HHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHH
Confidence            2   2467777777655                         255555555    5567999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEE-EEEeeecCCCCCCCCHHHHHHHHHHHHHC-C-----cCEEEEcCCcCCCcHHHHHHH
Q 012949          265 DSLVRYRAVAHAAKVLSIPVRG-YVSCVVGCPVEGAIPPSKVAYVAKELHDM-G-----CFEISLGDTIGVGTPGTVVPM  337 (452)
Q Consensus       265 ~~l~~~~~~v~~Ak~~G~~V~~-~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-G-----ad~I~L~DT~G~~~P~~v~~l  337 (452)
                      ++++++.+.+++||++|....+ .+...|+.+|++|++++|+.++++.+.+. |     +++|+|+||+|+++|.+++++
T Consensus       148 ~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~  227 (333)
T PRK14847        148 EIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQ  227 (333)
T ss_pred             HHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHH
Confidence            9999999999999999652100 00112678899999999999999987665 4     778999999999999999999


Q ss_pred             HHHHHHhCC---CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949          338 LEAVMAVVP---VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV  414 (452)
Q Consensus       338 i~~l~~~~p---~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i  414 (452)
                      |+.++++++   .++|++|+|||+|||+||+++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++
T Consensus       228 i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~i  301 (333)
T PRK14847        228 IEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGL  301 (333)
T ss_pred             HHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCc
Confidence            999999875   578999999999999999999999999999999999999      99999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHhCCCCCCCcccccch
Q 012949          415 DLRKLMLAGDFINKHLGRPSGSKTAIALNR  444 (452)
Q Consensus       415 Dl~~L~~la~~v~~~~g~~~p~~~pi~G~~  444 (452)
                      |+.+|.++++++++++|+++|+++|++|-+
T Consensus       302 d~~~l~~~~~~v~~~sg~~v~~~kPivg~~  331 (333)
T PRK14847        302 DFRDMAALRACVSECNQLPIDVFHPYAWLD  331 (333)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCeecCC
Confidence            999999999999999999999999999954

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=4.1e-56  Score=437.24  Aligned_cols=255  Identities=24%  Similarity=0.313  Sum_probs=234.0

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHHHh-ccCCceeEEecchhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAVRD-LEGARLPVLTPNLKV  206 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i~~-~~~~~l~~l~~~~~~  206 (452)
                      |+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|.       +.+.+ +.++.+.+ .+++++.++++..  
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~-------~~~~~~e~~~~l~~~~~~~~~~~~~r~~--   71 (259)
T cd07939           1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPA-------MGEEEREAIRAIVALGLPARLIVWCRAV--   71 (259)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCC-------CCHHHHHHHHHHHhcCCCCEEEEeccCC--
Confidence            6899999999999999999999999999999999999999754       33332 55555554 4567777776422  


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                                             .+++++|.++|++.|++++++||.|++.|+|+|++++++++.+++++||++|++|. 
T Consensus        72 -----------------------~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~-  127 (259)
T cd07939          72 -----------------------KEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS-  127 (259)
T ss_pred             -----------------------HHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE-
Confidence                                   24899999999999999999999999999999999999999999999999999876 


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                           |++++.++++++++.++++++.++|++.|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||++
T Consensus       128 -----~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~l  201 (259)
T cd07939         128 -----VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTL  201 (259)
T ss_pred             -----EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHH
Confidence                 5678899999999999999999999999999999999999999999999999999 6899999999999999999


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHHHHHHH
Q 012949          367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       367 aAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +|+++||++||+|++|||+      |+||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus       202 aAi~aG~~~vd~s~~G~G~------~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~  258 (259)
T cd07939         202 AAVRAGATHVSVTVNGLGE------RAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR  258 (259)
T ss_pred             HHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            9999999999999999999      99999999999999997 99999999999999999876

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.2e-55  Score=436.02  Aligned_cols=256  Identities=25%  Similarity=0.348  Sum_probs=236.2

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh-ccCCceeEEecchhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKV  206 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~  206 (452)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|||+ +|+      | .+.++.+++ .+++++.+|++... 
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~-   72 (268)
T cd07940           1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVK-   72 (268)
T ss_pred             CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCH-
Confidence            6899999999999999999999999999999999999999987 443      3 345555554 57788888885332 


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcC----CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAG----AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G----i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                                              +++++|.++|    ++.|++++++||.|++.|+|+|++++++.+.+++++||++|+
T Consensus        73 ------------------------~~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~  128 (268)
T cd07940          73 ------------------------KDIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGL  128 (268)
T ss_pred             ------------------------hhHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC
Confidence                                    3899999999    999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC--ccEEEEeCCCcCc
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV--EKLAVHLHDTYGQ  360 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~--~~l~vH~Hnd~Gl  360 (452)
                      +|.      |++|+.++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++|+  ++|++|+|||+||
T Consensus       129 ~v~------~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~Gl  202 (268)
T cd07940         129 DVE------FSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGL  202 (268)
T ss_pred             eEE------EeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcch
Confidence            876      67788999999999999999999999999999999999999999999999999986  7999999999999


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC----CCCCCChhhHHHHHHHHHH
Q 012949          361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG----VETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G----i~t~iDl~~L~~la~~v~~  428 (452)
                      |+||+++|+++||++||+|++|||+      |+||++||+|+.+|+.+|    +++++|+++|.++++++++
T Consensus       203 A~An~laAi~aG~~~iD~s~~GlG~------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~  268 (268)
T cd07940         203 AVANSLAAVEAGARQVECTINGIGE------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR  268 (268)
T ss_pred             HHHHHHHHHHhCCCEEEEEeecccc------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999999999999999      999999999999999876    9999999999999999863

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.7e-55  Score=448.63  Aligned_cols=293  Identities=20%  Similarity=0.251  Sum_probs=261.6

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE
Q 012949          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL  200 (452)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l  200 (452)
                      ..|+.+++.|+|||||+|+++.+|++++|++|+++|++.||++||+|||++.+     .|+++...+.+..+ ..+++++
T Consensus        53 ~~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l  127 (560)
T KOG2367|consen   53 SDVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTL  127 (560)
T ss_pred             cCcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEe
Confidence            35678999999999999999999999999999999999999999999998665     45555555555432 2455556


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      +|...              .+|+       ..+|+...+.-.+|++|++.||+|++.++++|+||+++.+.++++.+|.+
T Consensus       128 ~rc~~--------------~di~-------~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvksl  186 (560)
T KOG2367|consen  128 IRCHM--------------DDIE-------RTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSL  186 (560)
T ss_pred             eccch--------------HHHH-------HHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence            55443              2222       14555555556679999999999999999999999999999999999999


Q ss_pred             CC-cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeCC
Q 012949          281 SI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHD  356 (452)
Q Consensus       281 G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~Hn  356 (452)
                      |. .++      |++|+.+|++++|+.+++++..++|+.++.|+||+|+.+|.+++++|+.++.+.|+   +-|+.||||
T Consensus       187 g~~~ie------FSpEd~~rse~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHN  260 (560)
T KOG2367|consen  187 GKWDIE------FSPEDFGRSELEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHN  260 (560)
T ss_pred             ccceEE------ECccccccCcHHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecC
Confidence            95 455      99999999999999999999999999999999999999999999999999999886   358999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC---CCCCCChhhHHHHHHHHHHHhCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG---VETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G---i~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                      |+|+|+||++.+++|||++||+||+|+||      |+||++||+|+++|...|   +...+|+.+|.++.++++++.+++
T Consensus       261 D~G~a~Ant~~g~~AGA~~VE~~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~  334 (560)
T KOG2367|consen  261 DLGCATANTELGLLAGARQVEVTINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGIN  334 (560)
T ss_pred             CccHHHHHHHHHhhcCcceEEEEeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCC
Confidence            99999999999999999999999999999      999999999999999888   888999999999999999999999


Q ss_pred             CCCCcccccchhhhhccCC
Q 012949          434 SGSKTAIALNRIAADASKI  452 (452)
Q Consensus       434 ~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +|+++|++|.++|+|+|||
T Consensus       335 v~p~~pi~G~~~Fth~SGi  353 (560)
T KOG2367|consen  335 VPPHKPIVGANAFTHESGI  353 (560)
T ss_pred             CCCCCccccceeEeecccc
Confidence            9999999999999999997

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=8.6e-55  Score=428.91  Aligned_cols=259  Identities=20%  Similarity=0.230  Sum_probs=228.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhh
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKV  206 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~  206 (452)
                      ++|+|||||||+|.++..|++++|++|++.|+++||+.||+|+|   +..|++++..+.+..+  ....++.++.+.   
T Consensus         1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~~~l~~~--~~~~~v~~~~r~---   72 (262)
T cd07948           1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSP---AASPQSRADCEAIAKL--GLKAKILTHIRC---   72 (262)
T ss_pred             CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHHHHHHhC--CCCCcEEEEecC---
Confidence            47999999999999999999999999999999999999999985   4456654443333221  112334333321   


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                                            ..+++++|.++|++.|++++++||.|++.|+|++++++++.+.+++++||+.|++|.+
T Consensus        73 ----------------------~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~  130 (262)
T cd07948          73 ----------------------HMDDARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRF  130 (262)
T ss_pred             ----------------------CHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence                                  1249999999999999999999999999999999999999999999999999999998


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                      +++.+      ++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++.+| ++|++|+|||+|||+||++
T Consensus       131 ~~eda------~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~  203 (262)
T cd07948         131 SSEDS------FRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAY  203 (262)
T ss_pred             EEEee------CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHH
Confidence            77755      4667899999999999999999999999999999999999999999998 6899999999999999999


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC---CCCCCCChhhHHHHHHHHHH
Q 012949          367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       367 aAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~---Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +|+++||++||+|++|||+      |+||++||+|+.+|+..   |+++++|+++|.++++++++
T Consensus       204 ~a~~aG~~~vd~s~~GlGe------raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~  262 (262)
T cd07948         204 AALEAGATHIDTTVLGIGE------RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD  262 (262)
T ss_pred             HHHHhCCCEEEEecccccc------ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence            9999999999999999999      99999999999999753   67789999999999999864

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1e-54  Score=432.34  Aligned_cols=263  Identities=19%  Similarity=0.198  Sum_probs=234.4

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH-HHHHHH-Hhc---cCCceeEEec
Q 012949          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR-DVMEAV-RDL---EGARLPVLTP  202 (452)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e-~v~~~i-~~~---~~~~l~~l~~  202 (452)
                      .++|+|||||+|+++..|++++|++|+++|+++||+.||+||       |++.+.+ ++++.+ +..   .++++.+|+|
T Consensus         3 ~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf-------P~~~~~e~e~~~~i~~~~~~~~~~~~~al~r   75 (284)
T cd07942           3 IWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGF-------PSASQTDFDFVRELIEEDLIPDDVTIQVLTQ   75 (284)
T ss_pred             cccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence            468999999999999999999999999999999999999996       5566666 677777 331   3678889998


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CCC--EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~--~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +.+                         .++++|+++  |++  .|++++++||.|++.|+|+|++|+++.+.+++++||
T Consensus        76 ~~~-------------------------~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~  130 (284)
T cd07942          76 ARE-------------------------DLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVK  130 (284)
T ss_pred             CCh-------------------------hhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            876                         368999987  665  799999999999999999999999999999999999


Q ss_pred             hCCCcE-EEEEEeeecCCCCCCCCHHHHHHHHHHHHHC---CcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCCC---c
Q 012949          279 VLSIPV-RGYVSCVVGCPVEGAIPPSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPV---E  348 (452)
Q Consensus       279 ~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~  348 (452)
                      ++|++. ...+-+.|+.+|++|++++++.++++.+.++   |++   +|+|+||+|+++|.+++++++.+++.+|.   +
T Consensus       131 ~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~  210 (284)
T cd07942         131 ELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESV  210 (284)
T ss_pred             HhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCc
Confidence            999762 1122334677888899999999999999887   544   99999999999999999999999999874   4


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +|++|+|||+|||+||+++|+++||++||+|++|+|+      |+||++||+|+++|+.+|+++++|+++|.++++++++
T Consensus       211 ~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~  284 (284)
T cd07942         211 IISLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE  284 (284)
T ss_pred             eEEEEecCCCchHHHHHHHHHHhCCCEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            6999999999999999999999999999999999999      9999999999999999999999999999999999864

Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=100.00  E-value=1.4e-53  Score=416.69  Aligned_cols=264  Identities=40%  Similarity=0.582  Sum_probs=247.7

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhh
Q 012949          130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVIL  208 (452)
Q Consensus       130 ~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i  208 (452)
                      +|||||||+|++++.|++++|+++++.|+++||++||+|++.+++++|++.|.+++++.+++. ++.++.+|+++..   
T Consensus         1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~---   77 (265)
T cd03174           1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNRE---   77 (265)
T ss_pred             CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCch---
Confidence            599999999999999999999999999999999999999999888889999988888888764 3788888887632   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                                            ++++.+.++|++.|+++++.||.|.+.|+++++++.++.+.+.++++|+.|+++.+++
T Consensus        78 ----------------------~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~  135 (265)
T cd03174          78 ----------------------KGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL  135 (265)
T ss_pred             ----------------------hhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence                                  3899999999999999999999999999999999999999999999999999999888


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      +.+++|    ..+++++.++++.+.++|++.|+|+||+|.++|+++.++++.+++.+|+++|++|+|||+|||+||+++|
T Consensus       136 ~~~~~~----~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA  211 (265)
T cd03174         136 EDAFGC----KTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAA  211 (265)
T ss_pred             EeecCC----CCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHH
Confidence            876533    3789999999999999999999999999999999999999999999997899999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949          369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +++||++||+|++|||+      |+||++||+++.+|+..|+++++|+++|.++++++++
T Consensus       212 ~~aG~~~id~s~~G~G~------~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~  265 (265)
T cd03174         212 LEAGADRVDGSVNGLGE------RAGNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE  265 (265)
T ss_pred             HHcCCCEEEeccccccc------cccCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence            99999999999999999      9999999999999999999999999999999998863

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=3e-53  Score=421.07  Aligned_cols=256  Identities=21%  Similarity=0.260  Sum_probs=226.2

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSG-----LPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL  200 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~G-----v~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l  200 (452)
                      |+|+|+|||||+|.++.. ++++|++|++.|.++|     |+.||++++++       +|.+++.+.++... ...+.++
T Consensus         1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~   72 (279)
T cd07947           1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW   72 (279)
T ss_pred             CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence            689999999999999885 9999999999999999     99999987643       47777777775421 2334443


Q ss_pred             e-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          201 T-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       201 ~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      . ++.                          +++++|+++|++.|.+++++||.|++.|+|+|++++++++.+++++||+
T Consensus        73 ~r~~~--------------------------~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~  126 (279)
T cd07947          73 IRANK--------------------------EDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALD  126 (279)
T ss_pred             ecCCH--------------------------HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence            3 333                          4999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEeeecCCCCCCCCHH-----HHHHHHHHHHHCCcC-EEEEcCCcCCCcH-------HHHHHHHHHHHHh--
Q 012949          280 LSIPVRGYVSCVVGCPVEGAIPPS-----KVAYVAKELHDMGCF-EISLGDTIGVGTP-------GTVVPMLEAVMAV--  344 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~~r~d~e-----~l~~~a~~l~~~Gad-~I~L~DT~G~~~P-------~~v~~li~~l~~~--  344 (452)
                      +|+.|++++      ++.+|.+++     ++.++++.+.++|++ +|+|+||+|+++|       .+++++++.++++  
T Consensus       127 ~g~~v~~~~------ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~  200 (279)
T cd07947         127 HGIKPRCHL------EDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCG  200 (279)
T ss_pred             CCCeEEEEE------EcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcC
Confidence            999998666      456777663     677777777779999 8999999999988       6899999999998  


Q ss_pred             CCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHH
Q 012949          345 VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAG  423 (452)
Q Consensus       345 ~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la  423 (452)
                      +|.++|++|+|||+|||+||+++|+++||++||+|++|||+      |+||++||+++++|+.+ |+++++|+++|.+++
T Consensus       201 ~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~  274 (279)
T cd07947         201 VPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIA  274 (279)
T ss_pred             CCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHH
Confidence            56678999999999999999999999999999999999999      99999999999999997 999999999999999


Q ss_pred             HHHHH
Q 012949          424 DFINK  428 (452)
Q Consensus       424 ~~v~~  428 (452)
                      +++++
T Consensus       275 ~~~~~  279 (279)
T cd07947         275 EYFEK  279 (279)
T ss_pred             HHHhC
Confidence            99763

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.5e-52  Score=415.38  Aligned_cols=267  Identities=21%  Similarity=0.267  Sum_probs=232.3

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhc--cCCceeEEecchh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLK  205 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~~~~~  205 (452)
                      |+|||||||+|++++.|++++|++|++.|+++||++||+|++ ++|+.+       +.++.++++  +++++.++.+...
T Consensus         1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~   73 (273)
T cd07941           1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPKDT-------EFFARAKKLKLKHAKLAAFGSTRR   73 (273)
T ss_pred             CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHHHH-------HHHHHHHHcCCCCcEEEEEecccc
Confidence            689999999999999999999999999999999999999995 455422       234555443  3677776664332


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                      ..+      ..           ....++++++++|++.|+++.++||.|++.++|+|++++++++.+++++||+.|++|.
T Consensus        74 ~~i------~~-----------~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~  136 (273)
T cd07941          74 AGV------KA-----------EEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVI  136 (273)
T ss_pred             cCC------Cc-----------cchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE
Confidence            111      00           0123789999999999999999999999999999999999999999999999999998


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  365 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa  365 (452)
                      ++.+. |  .+.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+
T Consensus       137 ~~~~~-~--~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~  213 (273)
T cd07941         137 FDAEH-F--FDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANS  213 (273)
T ss_pred             EeEEe-c--cccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHH
Confidence            76443 3  35568899999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH-cCCCC--CCCChhhHHHHHHHHHH
Q 012949          366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS-GLGVE--TNVDLRKLMLAGDFINK  428 (452)
Q Consensus       366 LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~-~~Gi~--t~iDl~~L~~la~~v~~  428 (452)
                      ++|+++||++||+|++||||      |+||++||+++.+|+ .+|++  +++|+++|.++++++++
T Consensus       214 laA~~aGa~~id~s~~GlGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~  273 (273)
T cd07941         214 LAAVEAGATQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE  273 (273)
T ss_pred             HHHHHcCCCEEEEecccccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence            99999999999999999999      999999999999998 46765  48999999999999863

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=4.8e-52  Score=409.28  Aligned_cols=254  Identities=26%  Similarity=0.329  Sum_probs=226.8

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCCcccccCCHHHHHHHHH-hccCCceeEE
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPKWVPQLADARDVMEAVR-DLEGARLPVL  200 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l  200 (452)
                      |+|+|||||||+|.+++.|++++|+++++.|+++||++||+|++.     +.++.|+..+.++.++.++ ..+++++.++
T Consensus         1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~   80 (263)
T cd07943           1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL   80 (263)
T ss_pred             CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence            689999999999999999999999999999999999999999642     3345566677777777774 4577888887


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      +....                      ...+++++++++|++.|+++++.|+.              ..+.+++++||+.
T Consensus        81 ~~~~~----------------------~~~~~i~~a~~~g~~~iri~~~~s~~--------------~~~~~~i~~ak~~  124 (263)
T cd07943          81 LLPGI----------------------GTVDDLKMAADLGVDVVRVATHCTEA--------------DVSEQHIGAARKL  124 (263)
T ss_pred             ecCCc----------------------cCHHHHHHHHHcCCCEEEEEechhhH--------------HHHHHHHHHHHHC
Confidence            62211                      12358999999999999999999985              3567889999999


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      |++|.++++.      .++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+||
T Consensus       125 G~~v~~~~~~------~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~Gl  198 (263)
T cd07943         125 GMDVVGFLMM------SHMASPEELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGL  198 (263)
T ss_pred             CCeEEEEEEe------ccCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcch
Confidence            9999988875      3678999999999999999999999999999999999999999999999866899999999999


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949          361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~  428 (452)
                      |+||+++|+++||++||+|++|||+      |+||++||+++.+|+.+|+++++|+++|.++++++.+
T Consensus       199 A~AN~laAi~aGa~~vd~s~~GlG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~  260 (263)
T cd07943         199 AVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR  260 (263)
T ss_pred             HHHHHHHHHHhCCCEEEeecccccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999      9999999999999999999999999999999999765

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=100.00  E-value=5e-52  Score=411.99  Aligned_cols=263  Identities=22%  Similarity=0.293  Sum_probs=235.9

Q ss_pred             EEeCCccccCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEecCCC----CCcccccCCHHHHHHHHHh-ccCCceeEEec
Q 012949          129 IVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVS----PKWVPQLADARDVMEAVRD-LEGARLPVLTP  202 (452)
Q Consensus       129 I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s----~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~  202 (452)
                      |+|||||||+|++ +..|++++|+++++.|+++||+.||+|+++.    +++.  ..+.++.++.+++ .+++++.+|++
T Consensus         1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r   78 (275)
T cd07937           1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR   78 (275)
T ss_pred             CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence            5899999999998 7889999999999999999999999998753    2222  2455666666654 57788888887


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      ..+     +.+|..+|.++++.       +++++.++|++.|+++++.|+              ++++.+.+++||++|+
T Consensus        79 ~~~-----~~~~~~~p~~~~~~-------di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~  132 (275)
T cd07937          79 GQN-----LVGYRHYPDDVVEL-------FVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGK  132 (275)
T ss_pred             ccc-----ccCccCCCcHHHHH-------HHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCC
Confidence            654     56777888776654       999999999999999999998              4788899999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      +|.+++++++    .++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+
T Consensus       133 ~v~~~i~~~~----~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~  207 (275)
T cd07937         133 HVEGAICYTG----SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAV  207 (275)
T ss_pred             eEEEEEEecC----CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHH
Confidence            9998888654    47899999999999999999999999999999999999999999999998 689999999999999


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      ||+++|+++||++||+|++||||      |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus       208 aN~laA~~aGa~~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~  269 (275)
T cd07937         208 ATYLAAAEAGVDIVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR  269 (275)
T ss_pred             HHHHHHHHhCCCEEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999      999999999999999999999999999999999999876

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=3.1e-51  Score=431.89  Aligned_cols=292  Identities=20%  Similarity=0.292  Sum_probs=258.8

Q ss_pred             CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCc
Q 012949          123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGAR  196 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~  196 (452)
                      |+++|.|+|+|||||.|+++ ..|+++++++|++.|+++|++.||+|    |.+.-.+..  .|+++.++.+++ +++++
T Consensus         1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~--Edpwerlr~lr~~~~nt~   78 (499)
T PRK12330          1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN--EDPWERLRTFRKLMPNSR   78 (499)
T ss_pred             CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC--CCHHHHHHHHHHhCCCCe
Confidence            45679999999999999988 67999999999999999999999998    433222221  467777777764 68999


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +++|+++.+     +++|.++++++++.       ++++++++|++.||||+++||+              ++++.+++.
T Consensus        79 lqmL~Rg~N-----~vGy~~y~ddvv~~-------fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~  132 (499)
T PRK12330         79 LQMLLRGQN-----LLGYRHYEDEVVDR-------FVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKA  132 (499)
T ss_pred             EEEEEcccc-----cCCccCcchhHHHH-------HHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHH
Confidence            999999876     88999999999885       9999999999999999999995              667788999


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeC
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLH  355 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~H  355 (452)
                      +|+.|..++++|+++.+ |   ..+++++.++++++.++||++|+|+||+|.++|.+++++|+.+++++| +++|++|+|
T Consensus       133 vk~ag~~~~~~i~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~H  208 (499)
T PRK12330        133 VKKVGKHAQGTICYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCH  208 (499)
T ss_pred             HHHhCCeEEEEEEEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            99999999999998753 3   458999999999999999999999999999999999999999999996 789999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh-----
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL-----  430 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~-----  430 (452)
                      ||+|||+||+++|+++||++||+|++|||+      |+||++||+++++|+.+|+++++|+++|.+++++++++.     
T Consensus       209 nt~GlA~An~laAieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~  282 (499)
T PRK12330        209 STTGVTLVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKE  282 (499)
T ss_pred             CCCCcHHHHHHHHHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999      999999999999999999999999999999998887653     


Q ss_pred             ------CCCCCCCcc-cccchhhhhccCC
Q 012949          431 ------GRPSGSKTA-IALNRIAADASKI  452 (452)
Q Consensus       431 ------g~~~p~~~p-i~G~~vf~h~Sgi  452 (452)
                            +...+..++ +.|...|+|+|++
T Consensus       283 ~~~~~~~~d~~v~~~qiPGGm~snl~~Ql  311 (499)
T PRK12330        283 FESKTTGVETEIFKSQIPGGMLSNMESQL  311 (499)
T ss_pred             ccccccCCCCccccCCCCCCchhhHHHHH
Confidence                  344555555 7888888887753

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=6.1e-51  Score=427.30  Aligned_cols=286  Identities=20%  Similarity=0.267  Sum_probs=247.9

Q ss_pred             CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~  198 (452)
                      ++|+|+|+|||||.|++ +..|++++|++|++.|+++||+.||++    |+++-.++.  .++++.++.+++ +++++++
T Consensus         2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~--e~p~e~l~~l~~~~~~~~l~   79 (448)
T PRK12331          2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLN--EDPWERLRKIRKAVKKTKLQ   79 (448)
T ss_pred             CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCC--CCHHHHHHHHHHhCCCCEEE
Confidence            35999999999999998 457999999999999999999999998    332211111  356778888865 4889999


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +|++..+     +.+|.++++++++.       ++++|+++|++.|++|+++||.+              ++.+++++||
T Consensus        80 ~l~r~~N-----~~G~~~~pddvv~~-------~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak  133 (448)
T PRK12331         80 MLLRGQN-----LLGYRNYADDVVES-------FVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATK  133 (448)
T ss_pred             EEecccc-----ccccccCchhhHHH-------HHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHH
Confidence            8887665     78999999998774       99999999999999999999963              4667899999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      ++|+.++++++++++    .+++++++.++++++.++||++|+|+||+|.++|.+++++|++++++++ ++|++|+|||+
T Consensus       134 ~~G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~  208 (448)
T PRK12331        134 KAGGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATS  208 (448)
T ss_pred             HcCCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCC
Confidence            999999999998864    3678999999999999999999999999999999999999999999997 69999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC-----
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP-----  433 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~-----  433 (452)
                      |||+||+++|+++||++||+|++|+|+      |+||++||+++++|+.+|+++++|+++|.+++++++++...-     
T Consensus       209 GlA~AN~laAieaGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r~~y~~~~~  282 (448)
T PRK12331        209 GIAEMTYLKAIEAGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIRDHYREEGI  282 (448)
T ss_pred             CcHHHHHHHHHHcCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999      999999999999999999999999999999999998764322     


Q ss_pred             CCCCcccccchhhhhc
Q 012949          434 SGSKTAIALNRIAADA  449 (452)
Q Consensus       434 ~p~~~pi~G~~vf~h~  449 (452)
                      .++....+-.+++.|+
T Consensus       283 ~~~~~~~~~~~v~~~~  298 (448)
T PRK12331        283 LNPKVKDVEPKTLIYQ  298 (448)
T ss_pred             CCcccccCCcCeeecC
Confidence            2333334445566654

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=2.5e-50  Score=423.59  Aligned_cols=285  Identities=19%  Similarity=0.229  Sum_probs=248.3

Q ss_pred             ccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCceeE
Q 012949          126 FVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLPV  199 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~~  199 (452)
                      +|+|+|||||||.|+++ ..|++++|++|++.|+++||+.||+|..+    +..++.  .++++.++.+++ ++++++++
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~--e~p~e~l~~l~~~~~~~~l~~   79 (467)
T PRK14041          2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLN--ENPWERLKEIRKRLKNTKIQM   79 (467)
T ss_pred             ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccC--CCHHHHHHHHHHhCCCCEEEE
Confidence            48999999999999985 67999999999999999999999996322    122221  356777887765 47899999


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      |++..+     +++|..+++++++.       .+++|+++|++.|++|+++||.              +++...+++||+
T Consensus        80 l~r~~N-----~~G~~~~~dDvv~~-------fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~  133 (467)
T PRK14041         80 LLRGQN-----LVGYRHYADDVVEL-------FVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKK  133 (467)
T ss_pred             Eecccc-----ccCcccccchhhHH-------HHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHH
Confidence            887654     67898888888775       8999999999999999999994              567888999999


Q ss_pred             CCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          280 LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                      .|+.|+++++++++ |   +.+++++.++++++.++||++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|
T Consensus       134 ~G~~v~~~i~~t~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~G  208 (467)
T PRK14041        134 HGAHVQGAISYTVS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTG  208 (467)
T ss_pred             CCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCC
Confidence            99999999999885 4   567999999999999999999999999999999999999999999998 689999999999


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC--CCCCC
Q 012949          360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGSK  437 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~--~~p~~  437 (452)
                      ||+||+++|+++||++||+|++|+|+      |+||++||+++++|+.+|+++++|+++|.+++++++++...  +.++.
T Consensus       209 lA~AN~laAieaGad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~~y~~~~~~  282 (467)
T PRK14041        209 LASLAYLAAVEAGADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVG  282 (467)
T ss_pred             cHHHHHHHHHHhCCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999      99999999999999999999999999999999999987532  34444


Q ss_pred             cccccchhhhhc
Q 012949          438 TAIALNRIAADA  449 (452)
Q Consensus       438 ~pi~G~~vf~h~  449 (452)
                      .--+-.+++.|+
T Consensus       283 ~~~~~~~v~~~q  294 (467)
T PRK14041        283 MKSPDSRILVSQ  294 (467)
T ss_pred             CCCCCcCeeeCC
Confidence            434445666664

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=100.00  E-value=1.9e-49  Score=403.60  Aligned_cols=256  Identities=27%  Similarity=0.364  Sum_probs=225.0

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCC-cccccCCHHHHHHHH-HhccCCce
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAV-RDLEGARL  197 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~e~v~~~i-~~~~~~~l  197 (452)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||++||+|+..     +-. ..|.. +.++.++.+ +..+++++
T Consensus         2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~-~~~e~i~~~~~~~~~~~~   80 (337)
T PRK08195          2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH-TDEEYIEAAAEVVKQAKI   80 (337)
T ss_pred             CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC-CHHHHHHHHHHhCCCCEE
Confidence            46999999999999999999999999999999999999999998532     111 12333 345556666 45678898


Q ss_pred             eEEe-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          198 PVLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       198 ~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      .+|+ |+..                       +.++++.|.++|++.|+++++.++.              +.+.+.+++
T Consensus        81 ~~ll~pg~~-----------------------~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~  123 (337)
T PRK08195         81 AALLLPGIG-----------------------TVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGL  123 (337)
T ss_pred             EEEeccCcc-----------------------cHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHH
Confidence            8865 5432                       2359999999999999999988774              346788999


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-CCccEEEEeC
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLH  355 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-p~~~l~vH~H  355 (452)
                      ||++|++|.++++++      ++++++++.++++.+.++|++.|+|+||+|.++|.+++++++.+++++ |+++|++|+|
T Consensus       124 ak~~G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~H  197 (337)
T PRK08195        124 ARELGMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGH  197 (337)
T ss_pred             HHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence            999999999988863      678999999999999999999999999999999999999999999999 6789999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      ||+|||+||+++|+++||++||+|+.|||+      |+||++||+++++|+.+|+++++|+++|.++++.+..-+
T Consensus       198 nnlGla~ANslaAi~aGa~~iD~Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~  266 (337)
T PRK08195        198 NNLGLGVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPL  266 (337)
T ss_pred             CCcchHHHHHHHHHHhCCCEEEecChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999      999999999999999999999999999999999988765

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.5e-49  Score=392.52  Aligned_cols=252  Identities=17%  Similarity=0.209  Sum_probs=219.7

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc----ccccCCHHHHHHHHH-hc-cCCceeEEec
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW----VPQLADARDVMEAVR-DL-EGARLPVLTP  202 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~----~p~~~D~e~v~~~i~-~~-~~~~l~~l~~  202 (452)
                      |+|||||||+|.+++.|+.++|++|++.|+++||++||+||+.+...    ...+.+. +.++.+. .. +++++.++++
T Consensus         1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~   79 (266)
T cd07944           1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDD-EFLRRLLGDSKGNTKIAVMVD   79 (266)
T ss_pred             CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCH-HHHHHHHhhhccCCEEEEEEC
Confidence            58999999999999999999999999999999999999999865320    1112344 4455554 33 3788888886


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      ..+.                      ..++++.+.++|++.|+++++.++              ++++.+++++||++|+
T Consensus        80 ~~~~----------------------~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~  123 (266)
T cd07944          80 YGND----------------------DIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGY  123 (266)
T ss_pred             CCCC----------------------CHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCC
Confidence            5431                      234899999999999999987654              5888899999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQS  361 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA  361 (452)
                      +|.++++++      ++++++++.++++.+.++|+++|+|+||+|.++|++++++++.++++++. ++|++|+|||+|||
T Consensus       124 ~v~~~~~~a------~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla  197 (266)
T cd07944         124 EVFFNLMAI------SGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLA  197 (266)
T ss_pred             eEEEEEEee------cCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHH
Confidence            999888865      46889999999999999999999999999999999999999999999974 79999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHH-HHHHHHh
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG-DFINKHL  430 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la-~~v~~~~  430 (452)
                      +||+++|+++||++||+|++|||+      |+||++||+++++|+.+ +++++|+++|.+++ +++....
T Consensus       198 ~AN~laA~~aGa~~vd~s~~G~G~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~  260 (266)
T cd07944         198 LANTLEAIELGVEIIDATVYGMGR------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK  260 (266)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCC------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999      99999999999999988 78899999999999 7777654

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=100.00  E-value=3.6e-49  Score=400.90  Aligned_cols=257  Identities=26%  Similarity=0.331  Sum_probs=224.1

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-----CCC-cccccCCHHHHHHHHHhccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-----SPK-WVPQLADARDVMEAVRDLEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~-~~p~~~D~e~v~~~i~~~~~~~l~  198 (452)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||++||+|+..     +-. ..|...+.+.+.+..+.++++++.
T Consensus         1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~   80 (333)
T TIGR03217         1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA   80 (333)
T ss_pred             CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence            35999999999999999999999999999999999999999997431     111 123334445544455567788888


Q ss_pred             EEe-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          199 VLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       199 ~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      +++ |+..                       +.++++.|.++|++.|+++++.++.              +.+.+.+++|
T Consensus        81 ~ll~pg~~-----------------------~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~a  123 (333)
T TIGR03217        81 VLLLPGIG-----------------------TVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMA  123 (333)
T ss_pred             EEeccCcc-----------------------CHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHH
Confidence            765 5432                       2359999999999999999988874              3457889999


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCC
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHD  356 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hn  356 (452)
                      |++|++|.++++++      ++++++++.++++.+.++|++.|+|+||+|.++|.++.++++.++++++ +++|++|+||
T Consensus       124 k~~G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~Hn  197 (333)
T TIGR03217       124 RELGMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHH  197 (333)
T ss_pred             HHcCCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            99999999988864      4789999999999999999999999999999999999999999999985 5799999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      |+|||+||+++|+++||++||+|+.|||+      ++||++||+++++|+.+|+++++|+.+|.++++.+-.-+
T Consensus       198 nlGla~ANslaAi~aGa~~iD~Sl~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~  265 (333)
T TIGR03217       198 NLSLAVANSIAAIEAGATRIDASLRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL  265 (333)
T ss_pred             CCchHHHHHHHHHHhCCCEEEeecccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999      999999999999999999999999999999998777655

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=100.00  E-value=5e-49  Score=425.33  Aligned_cols=286  Identities=22%  Similarity=0.277  Sum_probs=255.8

Q ss_pred             CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~  198 (452)
                      ++|.|+|||||||.|+++. .|++++|++|++.|+++|++.||++    |.++.++..  .|+++.++.+++ +++++++
T Consensus         2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~--edp~e~l~~l~~~~~~~~l~   79 (592)
T PRK09282          2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLN--EDPWERLRKLKKALPNTPLQ   79 (592)
T ss_pred             CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCC--ccHHHHHHHHHHhCCCCEEE
Confidence            4599999999999999974 7999999999999999999999998    333333221  355555565554 4789999


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +|++..+     +++|.++++++++.       ++++|+++|++.|++|+++||.              +++..++++||
T Consensus        80 ~l~Rg~N-----~~gy~~ypd~vv~~-------~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak  133 (592)
T PRK09282         80 MLLRGQN-----LVGYRHYPDDVVEK-------FVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAK  133 (592)
T ss_pred             EEecccc-----ccccccccchhhHH-------HHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHH
Confidence            9987655     78999999998875       9999999999999999999995              56778899999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      +.|..++++++++++ |   .++++++.++++++.++|+++|+||||+|.++|.+++++++.++++++ ++|++|+|||.
T Consensus       134 ~~G~~v~~~i~~t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~  208 (592)
T PRK09282        134 KAGAHVQGTISYTTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTS  208 (592)
T ss_pred             HcCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCC
Confidence            999999999999874 4   468999999999999999999999999999999999999999999997 68999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC--CCC
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP--SGS  436 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~--~p~  436 (452)
                      |||+||+++|+++||++||+|++|+|+      |+||++||+++.+|+..|+++++|+++|.+++++++++....  +++
T Consensus       209 Gla~An~laAv~aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~  282 (592)
T PRK09282        209 GLAPMTYLKAVEAGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFES  282 (592)
T ss_pred             CcHHHHHHHHHHhCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCC
Confidence            999999999999999999999999999      999999999999999999999999999999999999987544  678


Q ss_pred             Ccccccchhhhhc
Q 012949          437 KTAIALNRIAADA  449 (452)
Q Consensus       437 ~~pi~G~~vf~h~  449 (452)
                      ..+..+.++|.|+
T Consensus       283 ~~~~~~~~v~~~~  295 (592)
T PRK09282        283 EFTIVDTRVLIHQ  295 (592)
T ss_pred             ccccCCccEEEEc
Confidence            8888899999886

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=1.1e-48  Score=422.02  Aligned_cols=268  Identities=19%  Similarity=0.257  Sum_probs=241.6

Q ss_pred             CCCccEEEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCccccc-CCHHHHHHHHHh-ccCC
Q 012949          123 IPRFVKIVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQL-ADARDVMEAVRD-LEGA  195 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~-~D~e~v~~~i~~-~~~~  195 (452)
                      |.++|+|+|||||||.|++. ..|++++|+.|++.|+++|++.||++    |.+.-   |.+ .|+++.++.+++ ++++
T Consensus         1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~---~~~~e~p~e~lr~l~~~~~~~   77 (593)
T PRK14040          1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACI---RFLGEDPWERLRELKKAMPNT   77 (593)
T ss_pred             CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhc---cccCCCHHHHHHHHHHhCCCC
Confidence            35679999999999999994 57999999999999999999999995    33321   222 366677777764 6889


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      ++++|+|+.+     +++|.++++++++.       +++.|+++|++.||||++.||+              +++..+++
T Consensus        78 ~lqml~Rg~n-----~vg~~~ypddvv~~-------~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~  131 (593)
T PRK14040         78 PQQMLLRGQN-----LLGYRHYADDVVER-------FVERAVKNGMDVFRVFDAMNDP--------------RNLETALK  131 (593)
T ss_pred             eEEEEecCcc-----eeccccCcHHHHHH-------HHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHH
Confidence            9999998876     88999999998874       9999999999999999999984              67788999


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH  355 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H  355 (452)
                      +||++|..++++|+++++ |   ..+++++.++++.+.++||++|+|+||+|.++|.+++++|+.++++++ ++|++|+|
T Consensus       132 ~ak~~G~~~~~~i~yt~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~H  206 (593)
T PRK14040        132 AVRKVGAHAQGTLSYTTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCH  206 (593)
T ss_pred             HHHHcCCeEEEEEEEeeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence            999999999999998763 3   347899999999999999999999999999999999999999999985 68999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      ||.|||+||+++|++|||++||+|++|||+      |+||++||+++++|+.+|+++++|+++|.++++++.++.
T Consensus       207 nt~GlA~An~laAieAGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~  275 (593)
T PRK14040        207 ATTGLSTATLLKAIEAGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR  275 (593)
T ss_pred             CCCchHHHHHHHHHHcCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999      999999999999999999999999999999999999875

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=100.00  E-value=2.7e-48  Score=418.65  Aligned_cols=264  Identities=20%  Similarity=0.281  Sum_probs=238.2

Q ss_pred             EEeCCccccCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCceeEEec
Q 012949          129 IVEVGPRDGLQNEK-NTVPTGVKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTP  202 (452)
Q Consensus       129 I~D~TLRDG~Q~~~-~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~  202 (452)
                      |+|+|||||.|+++ ..|++++|++|++.|+++||+.||+|    |.+...++.  .|+++.++.+++ .+++++++|++
T Consensus         1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~--e~~~e~l~~l~~~~~~~~l~~L~R   78 (582)
T TIGR01108         1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLN--EDPWERLRELKKALPNTPLQMLLR   78 (582)
T ss_pred             CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCC--CCHHHHHHHHHHhCCCCEEEEEEc
Confidence            68999999999985 47999999999999999999999998    222212121  467788888875 68899999987


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      +.+     +++|..+++++++.       ++++|+++|++.|++|+++||.              +++...+++||++|+
T Consensus        79 g~N-----~~G~~~ypddvv~~-------~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~  132 (582)
T TIGR01108        79 GQN-----LLGYRHYADDVVER-------FVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGA  132 (582)
T ss_pred             ccc-----ccccccCchhhHHH-------HHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCC
Confidence            654     67899999998875       9999999999999999999994              567888999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      .|+++|++++ +|   .++++++.++++++.++||++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+
T Consensus       133 ~v~~~i~~t~-~p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~  207 (582)
T TIGR01108       133 HAQGTISYTT-SP---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAE  207 (582)
T ss_pred             EEEEEEEecc-CC---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHH
Confidence            9999999876 55   368999999999999999999999999999999999999999999998 689999999999999


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhC
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g  431 (452)
                      ||+++|+++||++||+|++|||+      |+||++||+++++|+.+|+++++|+++|.+++++++++..
T Consensus       208 An~laAveaGa~~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~  270 (582)
T TIGR01108       208 MALLKAIEAGADGIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK  270 (582)
T ss_pred             HHHHHHHHhCCCEEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999      9999999999999999999999999999999999998754

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=5.8e-48  Score=404.01  Aligned_cols=288  Identities=18%  Similarity=0.213  Sum_probs=250.4

Q ss_pred             CCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCc
Q 012949          123 IPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGAR  196 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~  196 (452)
                      +.++|+|+|+|||||.|+... .|++++++.+++.|+++|+..||++..+    .-.+.  ..|+++.++.+++ +++++
T Consensus         9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl--~edpwerlr~~r~~~~nt~   86 (468)
T PRK12581          9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFL--NEDPWERLRTLKKGLPNTR   86 (468)
T ss_pred             cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc--CCCHHHHHHHHHHhCCCCc
Confidence            345799999999999999765 4999999999999999999999996332    22211  2477777777774 78999


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +++|+++.+     +++|..+++++++.       .++.|++.|++.+|+|++.+|+              ++++.+++.
T Consensus        87 lqmLlRG~n-----~vgy~~ypddvv~~-------fv~~a~~~Gidi~Rifd~lnd~--------------~n~~~ai~~  140 (468)
T PRK12581         87 LQMLLRGQN-----LLGYRHYADDIVDK-------FISLSAQNGIDVFRIFDALNDP--------------RNIQQALRA  140 (468)
T ss_pred             eeeeecccc-----ccCccCCcchHHHH-------HHHHHHHCCCCEEEEcccCCCH--------------HHHHHHHHH
Confidence            999998765     88999999999885       7999999999999999999985              777899999


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      +|+.|..++++++++. +|   ..+.+++.++++++.++||++|+|+||+|.++|.+++++|+++++ .++++|++|+||
T Consensus       141 ak~~G~~~~~~i~yt~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hn  215 (468)
T PRK12581        141 VKKTGKEAQLCIAYTT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHA  215 (468)
T ss_pred             HHHcCCEEEEEEEEEe-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCC
Confidence            9999999999999976 34   457899999999999999999999999999999999999999988 456799999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC-
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG-  435 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p-  435 (452)
                      |.|||+||+++|+++||++||+|++|+|+      ++||++||+++++|+..|+++++|+++|.+++++++++...-.| 
T Consensus       216 t~GlA~An~laAieAGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~~~  289 (468)
T PRK12581        216 TSGISQMTYLAAVEAGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYLAD  289 (468)
T ss_pred             CCccHHHHHHHHHHcCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999      99999999999999999999999999999999999988654443 


Q ss_pred             ----CCcccccchhhhhc
Q 012949          436 ----SKTAIALNRIAADA  449 (452)
Q Consensus       436 ----~~~pi~G~~vf~h~  449 (452)
                          +....+-.+++.|+
T Consensus       290 ~~~~~~~~~~d~~v~~hq  307 (468)
T PRK12581        290 GILDPSLLFPDPRTLQYQ  307 (468)
T ss_pred             ccCCCccCCCCcceeeCC
Confidence                22223344556554

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=100.00  E-value=1.3e-48  Score=377.65  Aligned_cols=236  Identities=30%  Similarity=0.421  Sum_probs=201.2

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhh
Q 012949          135 RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSIL  213 (452)
Q Consensus       135 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~  213 (452)
                      |||.|+.++.|++++|++|++.|+++||++||+|++ .+++      +.+.+.+..+..++.++.++++...+.++    
T Consensus         1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~i~----   70 (237)
T PF00682_consen    1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASED------DFEQVRRLREALPNARLQALCRANEEDIE----   70 (237)
T ss_dssp             THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSHH------HHHHHHHHHHHHHSSEEEEEEESCHHHHH----
T ss_pred             CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCHH------HHHHhhhhhhhhcccccceeeeehHHHHH----
Confidence            999999999999999999999999999999999954 3332      23333334444566788877755442221    


Q ss_pred             hhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          214 FQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                                       ..++++.++|++.|+++++.||.|++.++++|++++++++.++++++|++|++|.      |+
T Consensus        71 -----------------~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~  127 (237)
T PF00682_consen   71 -----------------RAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FG  127 (237)
T ss_dssp             -----------------HHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EE
T ss_pred             -----------------HHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eC
Confidence                             1466667799999999999999999999999999999999999999999999995      56


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      +++.++++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa  207 (237)
T PF00682_consen  128 CEDASRTDPEELLELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGA  207 (237)
T ss_dssp             ETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-
T ss_pred             ccccccccHHHHHHHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCC
Confidence            67889999999999999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      ++||+|+.|||+      |+||++||+++++|+.+|
T Consensus       208 ~~id~t~~GlG~------~~Gn~~le~lv~~L~~~g  237 (237)
T PF00682_consen  208 DRIDGTLGGLGE------RAGNAPLEELVAALERMG  237 (237)
T ss_dssp             SEEEEBGGGGSS------TTSB-BHHHHHHHHHHT-
T ss_pred             CEEEccCccCCC------CCCCccHHHHHHHHhhcC
Confidence            999999999999      999999999999999875

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=100.00  E-value=7.2e-47  Score=406.74  Aligned_cols=286  Identities=18%  Similarity=0.237  Sum_probs=252.0

Q ss_pred             CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~  198 (452)
                      ++|.|+|+|||||.|+... .|++++.+.+++.|+++|+..||++..+    .-.+.  ..|+++.++.+++ +++++++
T Consensus         2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl--~edpwerl~~~r~~~pnt~lq   79 (596)
T PRK14042          2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFL--KEDPWSRLRQLRQALPNTQLS   79 (596)
T ss_pred             CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeeccc--CCCHHHHHHHHHHhCCCCceE
Confidence            3599999999999997664 6999999999999999999999998543    22211  2477888888874 7899999


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +|+++.+     +++|.++++++++.       +++.|++.|+|.+|+|++.+|+              ++++..++.+|
T Consensus        80 mL~Rg~N-----~vGy~~~~d~vv~~-------~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k  133 (596)
T PRK14042         80 MLLRGQN-----LLGYRNYADDVVRA-------FVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIK  133 (596)
T ss_pred             EEecccc-----ccccccCChHHHHH-------HHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHH
Confidence            9999876     89999999999986       8999999999999999999995              77788999999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      +.|..+.++||++. +|   .++++++.++++++.++||++|+|+||+|.++|.+++++|++++++++ ++|++|+|||+
T Consensus       134 ~~G~~~~~~i~yt~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~  208 (596)
T PRK14042        134 SHKKHAQGAICYTT-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTS  208 (596)
T ss_pred             HcCCEEEEEEEecC-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCC
Confidence            99999999999874 44   467999999999999999999999999999999999999999999986 69999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC--CCCC
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR--PSGS  436 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~--~~p~  436 (452)
                      |||+||+++|+++||++||+|++|||+      ++||++||+++++|+.+|+++++|+++|.++++++.++...  +.++
T Consensus       209 Gla~an~laAieaGad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~~y~~~~~  282 (596)
T PRK14042        209 GLASICHYEAVLAGCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRKKYSQFES  282 (596)
T ss_pred             CcHHHHHHHHHHhCCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999      89999999999999999999999999999999999987632  2333


Q ss_pred             Ccccccchhhhhc
Q 012949          437 KTAIALNRIAADA  449 (452)
Q Consensus       437 ~~pi~G~~vf~h~  449 (452)
                      ...-+-.+++.|+
T Consensus       283 ~~~~~~~~v~~hq  295 (596)
T PRK14042        283 EAQNIDPRVQLYQ  295 (596)
T ss_pred             ccccCCcceeecC
Confidence            3333345666664

>PRK12999 pyruvate carboxylase; Reviewed

Probab=100.00  E-value=1.2e-44  Score=415.05  Aligned_cols=292  Identities=18%  Similarity=0.197  Sum_probs=250.0

Q ss_pred             CccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHHC--CCCEEEEecCCCCC-ccccc-CCHHHHHHHHHh-ccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPK-WVPQL-ADARDVMEAVRD-LEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~-~~p~~-~D~e~v~~~i~~-~~~~~l~  198 (452)
                      ++|.|+|||||||.|++ +..|+++++++|++.|+++  |++.||+|+.+.-. .++.+ .|+++.++.+++ ++++.++
T Consensus       531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q  610 (1146)
T PRK12999        531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQ  610 (1146)
T ss_pred             CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence            57999999999999998 4789999999999999999  99999999743211 01111 467777887774 6899999


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +|+++.+     +++|.++++++++.       ++++|+++|++.||||++.||+              +++..+++++|
T Consensus       611 ~l~Rg~n-----~vgy~~yp~~v~~~-------~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~vk  664 (1146)
T PRK12999        611 MLLRGSN-----AVGYTNYPDNVVRA-------FVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAVR  664 (1146)
T ss_pred             EEecccc-----cccccCCCchHHHH-------HHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHHH
Confidence            9998876     88999999988763       7999999999999999999884              66788899999


Q ss_pred             hCCCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          279 VLSIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       279 ~~G~~V~~~l~~~--~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      +.|..+++.++++  +-.|....++++++.++++++.++|+++|+|+||+|.++|.+++++|+.+|++++ ++|++|+||
T Consensus       665 ~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~-ipi~~H~Hn  743 (1146)
T PRK12999        665 ETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVD-LPIHLHTHD  743 (1146)
T ss_pred             HcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcC-CeEEEEeCC
Confidence            9999888889886  1122223479999999999999999999999999999999999999999999995 689999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS  436 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~  436 (452)
                      |+|||+||+++|+++||++||+|++|||+      ++||++||+++++|+..|+++++|+++|.+++++++++...-.|.
T Consensus       744 t~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~~  817 (1146)
T PRK12999        744 TSGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAPF  817 (1146)
T ss_pred             CCchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhcc
Confidence            99999999999999999999999999999      999999999999999999999999999999999999876544332


Q ss_pred             Cccccc--chhhhhc
Q 012949          437 KTAIAL--NRIAADA  449 (452)
Q Consensus       437 ~~pi~G--~~vf~h~  449 (452)
                      .....+  .+++.|+
T Consensus       818 ~~~~~~~~~~v~~~~  832 (1146)
T PRK12999        818 ESGLKSPTTEVYLHE  832 (1146)
T ss_pred             CCCCCCCCcCeEEec
Confidence            222233  3466664

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=100.00  E-value=4.1e-43  Score=353.35  Aligned_cols=267  Identities=22%  Similarity=0.314  Sum_probs=242.3

Q ss_pred             CccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCC----CCCcccccCCHHHHHHHHHh-ccCCcee
Q 012949          125 RFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFV----SPKWVPQLADARDVMEAVRD-LEGARLP  198 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~----s~~~~p~~~D~e~v~~~i~~-~~~~~l~  198 (452)
                      ++|+|+|++||||.|+.-. ++++++.+.|++.|++.|+..+|++..+    .-++..  .|+++.++.+|+ +++++++
T Consensus         4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLn--EDPWeRLr~lk~~~~nT~LQ   81 (472)
T COG5016           4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLN--EDPWERLRELKKAVPNTKLQ   81 (472)
T ss_pred             ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhc--CCHHHHHHHHHHhCCCcHHH
Confidence            5699999999999999876 5999999999999999999999997432    222222  477777777764 6889999


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      +|.++-+     ++||..+++++++.       .++++++.|+|.+|||++.||.              +++..+++.+|
T Consensus        82 MLlRGQN-----lvGYrhyaDDvVe~-------Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~k  135 (472)
T COG5016          82 MLLRGQN-----LVGYRHYADDVVEK-------FVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAK  135 (472)
T ss_pred             HHHccCc-----cccccCCchHHHHH-------HHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHH
Confidence            9988866     89999999999885       8999999999999999999996              67788999999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      ++|.++++.+||+. +|.+   +.++++++++++.++|+|.|+|+|++|.++|...+++|+.+|+.++ ++|.+|+|.|-
T Consensus       136 k~G~h~q~~i~YT~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~Ts  210 (472)
T COG5016         136 KHGAHVQGTISYTT-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATS  210 (472)
T ss_pred             hcCceeEEEEEecc-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEeccccc
Confidence            99999999999986 5665   5799999999999999999999999999999999999999999999 59999999999


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      |||.++.++|++||||+||+++..+.+      +++++++|.++++|+..++++++|++.|.++++++.++-
T Consensus       211 G~a~m~ylkAvEAGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr  276 (472)
T COG5016         211 GMAEMTYLKAVEAGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR  276 (472)
T ss_pred             chHHHHHHHHHHhCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence            999999999999999999999999888      899999999999999999999999999999999998654

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=100.00  E-value=2.2e-41  Score=343.43  Aligned_cols=281  Identities=19%  Similarity=0.219  Sum_probs=247.1

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      |+|||||||.|..+..|++++|+++++.|+++|++.||+|++..   .|+..+..+++...+  ...++.++.++.    
T Consensus         1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~----   71 (344)
T TIGR02146         1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCR----   71 (344)
T ss_pred             CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCC----
Confidence            68999999999999999999999999999999999999999643   233322222222222  122344444432    


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                                           ..+++.+.+++++.+.++.+.|+.++..+++++.++++..+...+++|++.|+.+..++
T Consensus        72 ---------------------~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~  130 (344)
T TIGR02146        72 ---------------------LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSA  130 (344)
T ss_pred             ---------------------HHHHHHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence                                 24889999999999999999999999999999999999999999999999999988666


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      +.      ..+.+++++.++++.+.++|++.|+++||.|.++|.+++.+++.+++..|.+++++|+|||+|+|++|+++|
T Consensus       131 ~~------~~~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~a  204 (344)
T TIGR02146       131 ED------TFRSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNA  204 (344)
T ss_pred             ee------CCCCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHH
Confidence            54      457889999999999999999999999999999999999999999998888899999999999999999999


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHHHHHHHHhCCCCCCCcccccchhhh
Q 012949          369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRIAA  447 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~vf~  447 (452)
                      +.+||+++|+|++|||+      ++||+++|.++..|... |+. .+|++++.++++.+....+.++++++|++|.++|+
T Consensus       205 l~~ga~~~d~s~~glG~------~~G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~  277 (344)
T TIGR02146       205 IEGGATIVDTTVLGIGE------RNGITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFT  277 (344)
T ss_pred             HHcCCCEEEEEeeeeeC------CCCCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhh
Confidence            99999999999999999      88999999999988874 654 48999999999999999999999999999999999


Q ss_pred             hccCC
Q 012949          448 DASKI  452 (452)
Q Consensus       448 h~Sgi  452 (452)
                      |+|||
T Consensus       278 ~~~g~  282 (344)
T TIGR02146       278 HKAGI  282 (344)
T ss_pred             cccch
Confidence            99996

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=100.00  E-value=4.5e-42  Score=392.61  Aligned_cols=305  Identities=15%  Similarity=0.184  Sum_probs=258.9

Q ss_pred             chhhHHHHH--------hhhcCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHC--CCCEEEEecCC----CC
Q 012949          109 DKDIRDITN--------KFLKGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEATSFV----SP  173 (452)
Q Consensus       109 ~~~~~~~~~--------~~~~~~p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~--Gv~~IEvG~~~----s~  173 (452)
                      +..+|++..        |-+.+. ++|.|+|+|+|||.|+..++ +++++.+.+++.++++  |+..+|++..+    +.
T Consensus       506 ~~g~~~~~~~~g~~~~~~~~~~~-~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~  584 (1143)
T TIGR01235       506 PRGTKQILDEKGPEGFAEWVRNQ-KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAM  584 (1143)
T ss_pred             CCChHHHHHhhCHHHHHHHHHhc-CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHH
Confidence            467777665        223333 45999999999999999874 9999999999999994  99999997433    22


Q ss_pred             CcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh
Q 012949          174 KWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE  252 (452)
Q Consensus       174 ~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd  252 (452)
                      ++..  .|+++-++.+++ ++++.+++|.++.+     +++|..+++++++.       .++.+++.|+|.+|||++.||
T Consensus       585 rfl~--EdPwerl~~~r~~~pn~~~qml~Rg~n-----~vgy~~ypd~vv~~-------f~~~~~~~GidifrifD~lN~  650 (1143)
T TIGR01235       585 RFLH--EDPWERLEDLRKGVPNILFQMLLRGAN-----GVGYTNYPDNVVKY-------FVKQAAQGGIDIFRVFDSLNW  650 (1143)
T ss_pred             HHhc--CCHHHHHHHHHHhCCCCceeeeecccc-----ccCccCCCHHHHHH-------HHHHHHHcCCCEEEECccCcC
Confidence            2221  477777777764 79999999999877     89999999999985       899999999999999999999


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC--CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc
Q 012949          253 AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--PVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT  330 (452)
Q Consensus       253 ~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~  330 (452)
                      +              ++++.+++.+|+.|..++++|||+-..  |....++.+++.++++++.++|+++|+|+||+|.++
T Consensus       651 ~--------------~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~  716 (1143)
T TIGR01235       651 V--------------ENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLK  716 (1143)
T ss_pred             H--------------HHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcC
Confidence            5              788899999999999999999987211  122246899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          331 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       331 P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      |.+++++|+.+++++ +++|++|+|||+|||+||+++|+++||++||+|++|||+      +++++++|+++++|+..|+
T Consensus       717 P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~  789 (1143)
T TIGR01235       717 PAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSER  789 (1143)
T ss_pred             HHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCC
Confidence            999999999999999 469999999999999999999999999999999999999      9999999999999999999


Q ss_pred             CCCCChhhHHHHHHHHHHHhCC--CCCCCcccccchhhhhc
Q 012949          411 ETNVDLRKLMLAGDFINKHLGR--PSGSKTAIALNRIAADA  449 (452)
Q Consensus       411 ~t~iDl~~L~~la~~v~~~~g~--~~p~~~pi~G~~vf~h~  449 (452)
                      ++++|+++|.+++++++++-..  +.++...-.-.+++.|+
T Consensus       790 ~tgidl~~l~~is~~~~~vr~~y~~~~~~~~~~~~~v~~~~  830 (1143)
T TIGR01235       790 DPGLNVAWIRELSAYWEAVRNLYAAFESDLKGPASEVYLHE  830 (1143)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHhhcCCCCCcCCCcCeEEec
Confidence            9999999999999999986532  23333322233566654

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.97  E-value=2.1e-30  Score=277.02  Aligned_cols=290  Identities=18%  Similarity=0.199  Sum_probs=246.0

Q ss_pred             CccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHC--CCCEEEEe----cCCCCCcccccCCHHHHHHHHHh-ccCCc
Q 012949          125 RFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEAT----SFVSPKWVPQLADARDVMEAVRD-LEGAR  196 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~--Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~-~~~~~  196 (452)
                      +.+-++|+|+||+.|+.-++ +.+.+...|+...+++  ..-.+|..    |.++.+|+.  .|+|+-++.+|+ ++++-
T Consensus       534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL~--EdPWeRL~~lRk~~PNvl  611 (1149)
T COG1038         534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFLK--EDPWERLERLRKAVPNVL  611 (1149)
T ss_pred             cceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHhc--cCHHHHHHHHHHhCCchH
Confidence            56999999999999998764 9999999999999886  56667763    445544432  577888888874 78999


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +++|.++.+     .++|+.+|+++|+.       .++.|...|+|.+|||++.|.+              ++++-++.+
T Consensus       612 fQMLLRgaN-----~VgY~nyPDnVi~~-------Fvkqaa~~GIDvFRiFDsLNwv--------------~~M~vaidA  665 (1149)
T COG1038         612 FQMLLRGAN-----GVGYKNYPDNVIRE-------FVKQAAKSGIDVFRIFDSLNWV--------------EQMRVAIDA  665 (1149)
T ss_pred             HHHHhcccc-----ccCcCCCchHHHHH-------HHHHHHhcCccEEEeehhhcch--------------hhhhhHHHH
Confidence            999888876     78899999999984       8899999999999999998874              777888999


Q ss_pred             HHhCCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949          277 AKVLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL  354 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g--~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~  354 (452)
                      +++.|.-+.+++||+=.  .|....++.+|+.++++++.++|+.++.++|++|.+.|...+.||.+||+.+ +.||++|.
T Consensus       666 V~e~gkv~EatiCYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHT  744 (1149)
T COG1038         666 VREAGKVAEATICYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHT  744 (1149)
T ss_pred             HHhcCCeEEEEEEeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEec
Confidence            99999888999998621  1222347899999999999999999999999999999999999999999998 56999999


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS  434 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~  434 (452)
                      ||+-|.++|..++|++||||.||+++..|.+      -+.++++-.++++|.....++++|.+.+.+++.|++..-..-.
T Consensus       745 HDTsG~~~at~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~~Ya  818 (1149)
T COG1038         745 HDTSGNGVATYLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRKLYA  818 (1149)
T ss_pred             cCCCccHHHHHHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999      9999999999999999888899999999999999997654333


Q ss_pred             C--CCcccccchhhhhc
Q 012949          435 G--SKTAIALNRIAADA  449 (452)
Q Consensus       435 p--~~~pi~G~~vf~h~  449 (452)
                      |  +..+-.-..||.||
T Consensus       819 ~FEs~lkgp~~eVY~HE  835 (1149)
T COG1038         819 PFESGLKGPATEVYLHE  835 (1149)
T ss_pred             hhhcCCCCCCcceeeee
Confidence            3  22222234566665

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=99.94  E-value=4.6e-26  Score=239.84  Aligned_cols=293  Identities=19%  Similarity=0.192  Sum_probs=244.2

Q ss_pred             CchhhHHHHH-----hhh---cCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHH--CCCCEEEEe----cCCC
Q 012949          108 NDKDIRDITN-----KFL---KGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVS--SGLPVVEAT----SFVS  172 (452)
Q Consensus       108 ~~~~~~~~~~-----~~~---~~~p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~--~Gv~~IEvG----~~~s  172 (452)
                      .++.+|++.-     .|.   .+.| ..-|+|+|+||..|+.-.+ +.+-+-..|+..-..  +|...+|..    |.++
T Consensus       534 pp~G~R~vLl~~GP~~FAk~VRn~~-g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVa  612 (1176)
T KOG0369|consen  534 PPKGWRDVLLEEGPEEFAKAVRNHP-GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVA  612 (1176)
T ss_pred             CCccHHHHHHhhCHHHHHHHHhcCC-CceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHH
Confidence            4577777542     122   2333 3789999999999998764 888888888888766  578788864    3344


Q ss_pred             CCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC
Q 012949          173 PKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS  251 (452)
Q Consensus       173 ~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S  251 (452)
                      .++.-  .++|+-++.+++ ++++.+++|.++.+     -++|..+++++|-.       ..+.|++.|+|.+|+|.+.+
T Consensus       613 mRFLh--EcPWeRL~~lRkliPNIPFQmLLRGAN-----avgYssyPDNviyk-------Fce~Ak~nGmDiFRVFDsLN  678 (1176)
T KOG0369|consen  613 MRFLH--ECPWERLRELRKLIPNIPFQMLLRGAN-----AVGYSSYPDNVIYK-------FCEQAKKNGMDIFRVFDSLN  678 (1176)
T ss_pred             HHHHh--cChHHHHHHHHHhCCCCcHHHHhcccc-----cccccCCChhHHHH-------HHHHHHhcCcceeeehhhhh
Confidence            44321  356666666665 68888998887776     67899999999874       77999999999999999987


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec--CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC
Q 012949          252 EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG--CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG  329 (452)
Q Consensus       252 d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g--~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~  329 (452)
                      +              ++++.--+++|++.|.-|.+.+||.-.  .|--+.++.+++..+++.++++|...++|+|++|++
T Consensus       679 ~--------------lpnl~lGmeAagkAGGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~l  744 (1176)
T KOG0369|consen  679 Y--------------LPNLLLGMEAAGKAGGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVL  744 (1176)
T ss_pred             h--------------hhhhhhhHhhhhccCCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhccc
Confidence            7              466666678999999999999998621  122235789999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          330 TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       330 ~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      .|....-||..+|+++|++||++|.||+-|-|+|..+++.+||||.||+++..|.+      -+.++++-.+++-|+..-
T Consensus       745 KP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~  818 (1176)
T KOG0369|consen  745 KPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTP  818 (1176)
T ss_pred             CHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCc
Confidence            99999999999999999999999999999999999999999999999999999999      899999999999999877


Q ss_pred             CCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949          410 VETNVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       410 i~t~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      .+++++++.+.+.+.|+++.-..-.|
T Consensus       819 ~Dt~l~~~~v~eysaYWe~~R~LYap  844 (1176)
T KOG0369|consen  819 LDTGLNLEHVREYSAYWEQMRLLYAP  844 (1176)
T ss_pred             ccCCCchHHHHHHHHHHHHHhhhhch
Confidence            99999999999999999987655444

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=98.64  E-value=9.7e-15  Score=148.41  Aligned_cols=140  Identities=13%  Similarity=-0.017  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCC---------------CccEEEEeCCCcCcHHHHHHH
Q 012949          304 KVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVP---------------VEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p---------------~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      .+...++.+.+.|.+ .+.+.|+. ...|..+.++++.+...-|               .+...+|+||+.|++++|++.
T Consensus       111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H  189 (344)
T TIGR02146       111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH  189 (344)
T ss_pred             HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            344455666667765 77777875 4567888888877765322               234778999999999999999


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCC-CCCCChhhHHHHHHHHHHHhCCCCCCCcccccchh
Q 012949          368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGV-ETNVDLRKLMLAGDFINKHLGRPSGSKTAIALNRI  445 (452)
Q Consensus       368 Al~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi-~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G~~v  445 (452)
                      +...|+..+..|+.|+|+      |+||++++  +..|.. .|. ++.+++..|..+..+....++..++..+|++|.+.
T Consensus       190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~  261 (344)
T TIGR02146       190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG  261 (344)
T ss_pred             ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence            999999999999999999      99999996  333332 343 23456666666666555456778899999999999


Q ss_pred             hhhccCC
Q 012949          446 AADASKI  452 (452)
Q Consensus       446 f~h~Sgi  452 (452)
                      |+|.||+
T Consensus       262 ~~~~~~~  268 (344)
T TIGR02146       262 VTIPFNN  268 (344)
T ss_pred             CCCCCCC
Confidence            9999986

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.18  E-value=4.3e-05  Score=80.85  Aligned_cols=175  Identities=19%  Similarity=0.224  Sum_probs=108.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ...+.++++++++.+.+.|++.||+|++...      ....+.+..+++..+..+  ++...+     +++        +
T Consensus        11 D~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~------~~~~~~i~~l~~~~~~~~--ii~D~k-----l~d--------~   69 (430)
T PRK07028         11 DLLELDRAVEIAKEAVAGGADWIEAGTPLIK------SEGMNAIRTLRKNFPDHT--IVADMK-----TMD--------T   69 (430)
T ss_pred             ccCCHHHHHHHHHHHHhcCCcEEEeCCHHHH------HhhHHHHHHHHHHCCCCE--EEEEee-----ecc--------c
Confidence            3578999999999999999999999853210      111122333322211111  111111     000        0


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            -..+++.|+++|++.|++....++               ..+.++++++|+.|+.+...+   ++++    ++.
T Consensus        70 ------g~~~v~~a~~aGAdgV~v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~  121 (430)
T PRK07028         70 ------GAIEVEMAAKAGADIVCILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV  121 (430)
T ss_pred             ------hHHHHHHHHHcCCCEEEEecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH
Confidence                  012789999999999998754332               123567889999999876321   1111    112


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                          +.++.+.++|+|.|.+.  .|.   ..+....+.++.+++.++ ++|.+|+    |....|+..++++||+.|=
T Consensus       122 ----e~~~~a~~~GaD~I~~~--pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~  188 (430)
T PRK07028        122 ----KRAVELEELGVDYINVH--VGIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI  188 (430)
T ss_pred             ----HHHHHHHhcCCCEEEEE--eccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence                23566778899999764  232   112233467788877666 5899988    9999999999999998654

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=98.16  E-value=0.00032  Score=71.89  Aligned_cols=237  Identities=16%  Similarity=0.145  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.++.++.+.+.|++.|-+.....|. .+ .....++++.+++. +++.+.++++.....+.+..++        
T Consensus        71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~-~~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~--------  140 (340)
T TIGR03699        71 VLSVEEILQKIEELVAYGGTQILLQGGVNPD-LG-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGL--------  140 (340)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCC--------
Confidence            4799999999999999999999996543332 11 00123445555432 2344333333210000000111        


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEE--ecCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIF--ASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~--~s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                           ...+.++..+++|++.+.-.  -..++...+.-.  +.|.++.    .++++.+++.|+++..+++  +| ..  
T Consensus       141 -----~~~e~l~~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~v~~~~i--iG-lg--  206 (340)
T TIGR03699       141 -----SLREVLERLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLPTTATMM--FG-HV--  206 (340)
T ss_pred             -----CHHHHHHHHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeE--ee-CC--
Confidence                 01357888999999977521  223444333322  3355544    5777999999999876666  44 22  


Q ss_pred             CCCHHHHHHHHHHHHHCCcCE------EEE----cCCc----CCCcHHHHHHHHHHHHHhCCCc-cEEEEeCCCcCcHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFE------ISL----GDTI----GVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLP  363 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~------I~L----~DT~----G~~~P~~v~~li~~l~~~~p~~-~l~vH~Hnd~GlA~A  363 (452)
                       -+++...+.++.+.+.+.+.      |-+    .+|-    ...+|.+...+++..|-.+|++ .|..-. ...|  ..
T Consensus       207 -Et~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g--~~  282 (340)
T TIGR03699       207 -ETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQG--KE  282 (340)
T ss_pred             -CCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccC--hH
Confidence             24677778888888887654      221    2332    2467888999998888878863 122221 2233  34


Q ss_pred             HHHHHHHcCCCEEeecccCCCCCCCCCCCCCccc---HHHHHHHHHcCCCCC
Q 012949          364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVA---TEDVVYMLSGLGVET  412 (452)
Q Consensus       364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaa---lE~vv~~L~~~Gi~t  412 (452)
                      ....|+.+||+-+++++.. |.  |.. .+|..+   +++++.+++.+|..+
T Consensus       283 ~~~~~l~~Gan~~~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~~  330 (340)
T TIGR03699       283 VGQLALHFGANDFGSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFIP  330 (340)
T ss_pred             HHHHHHhcCCccCCCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCCe
Confidence            4677999999998888763 11  111 244444   799999998887753

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=98.14  E-value=0.00065  Score=68.84  Aligned_cols=240  Identities=11%  Similarity=0.107  Sum_probs=141.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.++.++...+.|++.|-+.....|..-  .....++++.+++. +++.+.++++.-..      -+.+...   
T Consensus        35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~------~~~~~~g---  103 (309)
T TIGR00423        35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD--IEYYEELFRAIKQEFPDVHIHAFSPMEVY------FLAKNEG---  103 (309)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHH------HHHHHcC---
Confidence            589999999999999999999988754333210  11124455555543 34555555442110      0000000   


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEE-EEe-cCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVA-IFA-SASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~-i~~-s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                          ....+.+++.+++|++.+. +.. ..++-..+...  +.+.++.    .++++.|++.|+++..+++  +|.+   
T Consensus       104 ----~~~~e~l~~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~----l~~i~~a~~~Gi~~~s~~i--iG~~---  170 (309)
T TIGR00423       104 ----LSIEEVLKRLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEW----LEVIKTAHRLGIPTTATMM--FGHV---  170 (309)
T ss_pred             ----CCHHHHHHHHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--ecCC---
Confidence                0113468889999999874 221 12333222221  3354444    4778999999999987776  5544   


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEE----E------cCCc-------CCCcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCc
Q 012949          299 AIPPSKVAYVAKELHDMGCFEIS----L------GDTI-------GVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQ  360 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~----L------~DT~-------G~~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~Gl  360 (452)
                       -+++...+.+..+.+.+.+...    +      .+|-       ...+|.+...+++..|=.+|.++ +..-. .++|.
T Consensus       171 -Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~  248 (309)
T TIGR00423       171 -ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGL  248 (309)
T ss_pred             -CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCH
Confidence             2567777888878877654211    1      2442       23678888888888877777532 43322 44553


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949          361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  411 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~  411 (452)
                      -  -...|+.+||+-+++|+..====|.|....+ ....++++..++..|..
T Consensus       249 ~--~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~  298 (309)
T TIGR00423       249 K--LAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV  298 (309)
T ss_pred             H--HHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            2  2478899999999988742111112211223 46789999888877764

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>PRK07094 biotin synthase; Provisional

Probab=98.07  E-value=0.00086  Score=68.05  Aligned_cols=201  Identities=15%  Similarity=0.124  Sum_probs=125.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.+++..++.+. +..+..                  
T Consensus        69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~-~~~g~~------------------  127 (323)
T PRK07094         69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAIT-LSLGER------------------  127 (323)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEE-EecCCC------------------
Confidence            46899999999999999999998864332221 0 11223344444432233222 111111                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                           ..+.++...++|++.+.+..- .|+... ..+++.  ...+...+.++.+++.|+.+..+++  +|.|.+   +.
T Consensus       128 -----~~e~l~~Lk~aG~~~v~~glEs~~~~~~-~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~  194 (323)
T PRK07094        128 -----SYEEYKAWKEAGADRYLLRHETADKELY-AKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TL  194 (323)
T ss_pred             -----CHHHHHHHHHcCCCEEEeccccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CH
Confidence                 235788899999999988653 333322 223321  2344555777999999999876666  555554   46


Q ss_pred             HHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccE----EEEeCCCcCcHHHHHHHH
Q 012949          303 SKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l----~vH~Hnd~GlA~ANaLaA  368 (452)
                      +.+.+.++.+.+++++.+.+      ++|    .....+.++..+++..|-.+|...|    ++-++...     -...+
T Consensus       195 ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~  269 (323)
T PRK07094        195 EDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKG  269 (323)
T ss_pred             HHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHH
Confidence            88888899999999886654      111    1234667888889988888887433    33223222     23589


Q ss_pred             HHcCCCEEeecccCC
Q 012949          369 LQMGISTVDCSVAGL  383 (452)
Q Consensus       369 l~aGa~~VD~Sv~Gl  383 (452)
                      +.+||+.+=+++..-
T Consensus       270 l~~Gan~~~~~~~~~  284 (323)
T PRK07094        270 LKAGANVVMPNLTPG  284 (323)
T ss_pred             HHcCCceecCCCCch
Confidence            999999776666543

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=98.03  E-value=0.00061  Score=70.05  Aligned_cols=236  Identities=14%  Similarity=0.134  Sum_probs=140.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++.++.++.+.+.|++.|-+.....|.     .+.   .++++.+++. ++..+.+++|.-  ..     |.... 
T Consensus        69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~-----~~~~~~~~i~~~Ik~~~~~i~~~~~t~~e--i~-----~~~~~-  135 (343)
T TIGR03551        69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPD-----LDGDFYLDILRAVKEEVPGMHIHAFSPME--VY-----YGARN-  135 (343)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-----CCHHHHHHHHHHHHHHCCCceEEecCHHH--HH-----HHHHH-
Confidence            4799999999999999999999887443332     123   3445555542 445554433210  00     00000 


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-----hhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-----SNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-----~~~~-~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                        ..   ....+.+++.+++|++.+..  ...+.+..     ...+ .+.++.    .+.++.|+++|+++.+.++  +|
T Consensus       136 --~g---~~~~e~l~~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~~~~~~~~----~~~i~~a~~~Gi~v~s~~i--~G  202 (343)
T TIGR03551       136 --SG---LSVEEALKRLKEAGLDSMPG--TAAEILDDEVRKVICPDKLSTAEW----IEIIKTAHKLGIPTTATIM--YG  202 (343)
T ss_pred             --cC---CCHHHHHHHHHHhCcccccC--cchhhcCHHHHHhcCCCCCCHHHH----HHHHHHHHHcCCcccceEE--Ee
Confidence              00   01235788899999998762  11232221     1111 244433    4778999999999987666  55


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCE------EEEc----CCc--------CCCcHHHHHHHHHHHHHhCCCc--cEEEE
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFE------ISLG----DTI--------GVGTPGTVVPMLEAVMAVVPVE--KLAVH  353 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~------I~L~----DT~--------G~~~P~~v~~li~~l~~~~p~~--~l~vH  353 (452)
                      .+ +   +.+...+.+..+.+++.+.      |-++    .|-        ..++|.+...+|+..|=.+|..  .|..-
T Consensus       203 ~~-E---t~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~  278 (343)
T TIGR03551       203 HV-E---TPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQAS  278 (343)
T ss_pred             cC-C---CHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeecc
Confidence            43 3   4577777777777766542      2222    332        2357888889888888777863  44444


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949          354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET  412 (452)
Q Consensus       354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~t  412 (452)
                      . .++|..  -...++.+||+-+++|+..==-=|.|....+ ...+++++.+.+..|..+
T Consensus       279 ~-~~l~~~--~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~  335 (343)
T TIGR03551       279 W-VKLGKK--LAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP  335 (343)
T ss_pred             c-cccCHH--HHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence            4 344433  3488899999999988754100011111232 347799999998887653

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.03  E-value=0.00056  Score=67.83  Aligned_cols=183  Identities=17%  Similarity=0.219  Sum_probs=113.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHHhcc----CCceeEEe-cchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVRDLE----GARLPVLT-PNLK  205 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~~~~----~~~l~~l~-~~~~  205 (452)
                      ..+.+.-.++++.|.+.|++.||+|+|-| |- -.|..           .+.+.+++.++++.    +..+..|+ -|.-
T Consensus        20 ~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi   99 (256)
T TIGR00262        20 DPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLI   99 (256)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH
Confidence            35788899999999999999999998754 31 01111           01234455554432    22222121 1110


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                              |           +....+.++.++++|++.|-+.+-.                ++...+.++.+|++|+...
T Consensus       100 --------~-----------~~G~e~f~~~~~~aGvdgviipDlp----------------~ee~~~~~~~~~~~gl~~i  144 (256)
T TIGR00262       100 --------F-----------RKGVEEFYAKCKEVGVDGVLVADLP----------------LEESGDLVEAAKKHGVKPI  144 (256)
T ss_pred             --------h-----------hhhHHHHHHHHHHcCCCEEEECCCC----------------hHHHHHHHHHHHHCCCcEE
Confidence                    0           0012347889999999988876421                2445678899999999864


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-  361 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-  361 (452)
                      .-+.     |   .++.+.+..+++..  .| +..+......|.-  .+..+.+.++.+|+..+. +|.+    ++|.. 
T Consensus       145 ~lv~-----P---~T~~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~~-pi~v----gfGI~~  209 (256)
T TIGR00262       145 FLVA-----P---NADDERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLKAYSAK-PVLV----GFGISK  209 (256)
T ss_pred             EEEC-----C---CCCHHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcCC-CEEE----eCCCCC
Confidence            2121     2   23466777666643  23 3344556777763  566799999999997643 5554    56665 


Q ss_pred             HHHHHHHHHcCCCEE
Q 012949          362 LPNILISLQMGISTV  376 (452)
Q Consensus       362 ~ANaLaAl~aGa~~V  376 (452)
                      -.++..++++|||.|
T Consensus       210 ~e~~~~~~~~GADgv  224 (256)
T TIGR00262       210 PEQVKQAIDAGADGV  224 (256)
T ss_pred             HHHHHHHHHcCCCEE
Confidence            567778889999854

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PLN02389 biotin synthase

Probab=98.02  E-value=0.0035  Score=65.57  Aligned_cols=224  Identities=13%  Similarity=0.082  Sum_probs=137.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.++.++.++.+.+.|+..|-++..   ...+  |  .+.+.+.+.++.+....+.+.+.+ . .             
T Consensus       115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e--~--~~~e~i~eiir~ik~~~l~i~~s~-G-~-------------  175 (379)
T PLN02389        115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGR--K--TNFNQILEYVKEIRGMGMEVCCTL-G-M-------------  175 (379)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCC--h--hHHHHHHHHHHHHhcCCcEEEECC-C-C-------------
Confidence            489999999999999999999887521   1111  1  124566677766543333222211 1 0             


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                             ...+.++..+++|++.+.+-.-.++ .+.+..-..+.++    ..+.++.|++.|+++...+.  +|. .+  
T Consensus       176 -------l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~----rl~ti~~a~~~Gi~v~sg~I--iGl-gE--  239 (379)
T PLN02389        176 -------LEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDD----RLETLEAVREAGISVCSGGI--IGL-GE--  239 (379)
T ss_pred             -------CCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHH----HHHHHHHHHHcCCeEeEEEE--ECC-CC--
Confidence                   1345888999999999988766555 3333222345444    44667999999999876655  553 22  


Q ss_pred             CCHHHHHHHHHHHHHC--CcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDM--GCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~--Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                       ++++..+.+..+.+.  .++.|.|      ++|    ....+|.+...+|...|=.+|+..+.+-.-- .-+.......
T Consensus       240 -t~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~  317 (379)
T PLN02389        240 -AEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQAL  317 (379)
T ss_pred             -CHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHH
Confidence             456777777777777  4565553      244    2357788999999988888886322221111 1223344688


Q ss_pred             HHHcCCCEEeecccCC-CCCCCCCCCCCcccHHHHHHHHHcCCCCCC
Q 012949          368 SLQMGISTVDCSVAGL-GGCPYAKGASGNVATEDVVYMLSGLGVETN  413 (452)
Q Consensus       368 Al~aGa~~VD~Sv~Gl-GecP~a~graGNaalE~vv~~L~~~Gi~t~  413 (452)
                      |+.+||+-+=+  +++ =       -+.+.+.++=+.+++.+|++..
T Consensus       318 ~l~~GAN~~~~--g~~~L-------tt~g~~~~~d~~~~~~lg~~~~  355 (379)
T PLN02389        318 CFLAGANSIFT--GDKLL-------TTPNNDFDADQAMFKELGLIPK  355 (379)
T ss_pred             HHHhCCCEEEE--CCccc-------CCCCCChHHHHHHHHHcCCCcc
Confidence            99999984422  121 1       2333455556677888888643

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=98.00  E-value=0.0006  Score=67.91  Aligned_cols=185  Identities=12%  Similarity=0.158  Sum_probs=116.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc---CCceeEEecchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE---GARLPVLTPNLKVI  207 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~---~~~l~~l~~~~~~~  207 (452)
                      ..+.+.-.++++.|.+.|+|.||+|+|-| |- -.|...           +.+.+++.++++.   ++.+..|       
T Consensus        25 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm-------   97 (263)
T CHL00200         25 DPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIF-------   97 (263)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEE-------
Confidence            35788999999999999999999998754 32 011111           1134455454432   2222111       


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                           +|-..   +   ++....+.++.+.++|++.|-+.+=.                ++...+..+.++++|+....-
T Consensus        98 -----~Y~N~---i---~~~G~e~F~~~~~~aGvdgviipDLP----------------~ee~~~~~~~~~~~gi~~I~l  150 (263)
T CHL00200         98 -----TYYNP---V---LHYGINKFIKKISQAGVKGLIIPDLP----------------YEESDYLISVCNLYNIELILL  150 (263)
T ss_pred             -----ecccH---H---HHhCHHHHHHHHHHcCCeEEEecCCC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence                 11110   0   00112347889999999999887521                244567889999999986532


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHH
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPN  364 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~AN  364 (452)
                      ++     |.   ++.+.+.++++..... +..+...-+.|.  ..|..+.++++.+|+... .|+.+    ++|-. -.+
T Consensus       151 v~-----Pt---T~~eri~~i~~~a~gF-IY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~  216 (263)
T CHL00200        151 IA-----PT---SSKSRIQKIARAAPGC-IYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQ  216 (263)
T ss_pred             EC-----CC---CCHHHHHHHHHhCCCc-EEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHH
Confidence            22     21   3466777777654311 445556777887  567889999999999654 46776    67777 445


Q ss_pred             HHHHHHcCCCEE
Q 012949          365 ILISLQMGISTV  376 (452)
Q Consensus       365 aLaAl~aGa~~V  376 (452)
                      +-...++|||.|
T Consensus       217 ~~~~~~~GADGv  228 (263)
T CHL00200        217 IKQIKGWNINGI  228 (263)
T ss_pred             HHHHHhcCCCEE
Confidence            556677899854

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=97.90  E-value=0.0021  Score=66.37  Aligned_cols=243  Identities=13%  Similarity=0.098  Sum_probs=140.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.++.++...+.|++.+-+.+...|. .+ +....++++.+++ .+++.+.+++|..-.-+....+.        
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~-~~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~--------  147 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPN-LP-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGL--------  147 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCC-CC-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCC--------
Confidence            3799999999999999999999998665553 11 1112344444443 25566655554210000000000        


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEE-EE-ecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVA-IF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~-i~-~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                           ...+.+++.+++|++.+. .- -..++...+ +...+ ....++..++++.|+++|+++...++  +|- .+   
T Consensus       148 -----~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Gl-gE---  214 (351)
T TIGR03700       148 -----PTEEVLDELKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGH-IE---  214 (351)
T ss_pred             -----CHHHHHHHHHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeC-CC---
Confidence                 012458889999999876 21 122332221 12111 11234444677999999999987777  442 22   


Q ss_pred             CHHHHHHHHHHHHHCCcCE------EEE----cCCc------CCCcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCcHHH
Q 012949          301 PPSKVAYVAKELHDMGCFE------ISL----GDTI------GVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLP  363 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~------I~L----~DT~------G~~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~GlA~A  363 (452)
                      ++++.++.+..+.+.+.+.      |-+    .+|-      ...+|.+...+++..|=.+|+++ |-.- -...|.  .
T Consensus       215 t~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~-w~~~~~--~  291 (351)
T TIGR03700       215 TPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAY-WVMLGL--K  291 (351)
T ss_pred             CHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc-ccccCH--H
Confidence            4677777777777776543      333    2443      45688888888888776667521 1110 011233  4


Q ss_pred             HHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949          364 NILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVET  412 (452)
Q Consensus       364 NaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~t  412 (452)
                      .+..++.+||+-+++|+..=--=|.|....+ .+..++++..++..|..+
T Consensus       292 ~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~p  341 (351)
T TIGR03700       292 LAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRVP  341 (351)
T ss_pred             HHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHcCCCe
Confidence            5688999999999888763111111111222 477899999998877653

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=97.86  E-value=0.0038  Score=65.07  Aligned_cols=231  Identities=13%  Similarity=0.134  Sum_probs=140.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++.++.++.+.+.|+..+.+.+...|.    ..+.+.+.+.++.+    +++.+.++++..-..+.+..+.     
T Consensus        90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~-----  160 (371)
T PRK07360         90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGL-----  160 (371)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCC-----
Confidence            5899999999999999999999998654443    22344455555443    3444444433110000000000     


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChH----HHh-h-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEA----FSK-S-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~----~~~-~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                              ...+.+++.+++|++.+.  -...+.    ..+ . .-.+|.++-    .+.++.|+++|+++...+.+  |
T Consensus       161 --------~~~e~l~~LkeAGld~~~--~t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i~--G  224 (371)
T PRK07360        161 --------SYEEVLKALKDAGLDSMP--GTAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMMY--G  224 (371)
T ss_pred             --------CHHHHHHHHHHcCCCcCC--CcchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEEe--e
Confidence                    123478899999999885  111111    111 1 113455444    47789999999999876663  4


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCE------EEE---------cCCcCC---CcHHHHHHHHHHHHHhCCC--ccEEEE
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFE------ISL---------GDTIGV---GTPGTVVPMLEAVMAVVPV--EKLAVH  353 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~------I~L---------~DT~G~---~~P~~v~~li~~l~~~~p~--~~l~vH  353 (452)
                      -   + -++++.++.+..+.+.+.+.      |-+         .+....   .+|.+...+|+..|=.+|.  +.|.--
T Consensus       225 ~---g-Et~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~  300 (371)
T PRK07360        225 H---V-ETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQAS  300 (371)
T ss_pred             C---C-CCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeecc
Confidence            2   1 25678888888888877654      322         222211   3677778888888777787  233332


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEeecccC------CCCCCCCCCCCC-cccHHHHHHHHHcCCCCC
Q 012949          354 LHDTYGQSLPNILISLQMGISTVDCSVAG------LGGCPYAKGASG-NVATEDVVYMLSGLGVET  412 (452)
Q Consensus       354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G------lGecP~a~graG-NaalE~vv~~L~~~Gi~t  412 (452)
                      . ..+|.  .-...++.+||+-+.+++.+      .|.      ... ...++++..+++..|..+
T Consensus       301 ~-~~lg~--~~~~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~~  357 (371)
T PRK07360        301 W-VKLGL--KLAQVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRIP  357 (371)
T ss_pred             c-eeeCH--HHHHHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCce
Confidence            2 23343  34567899999999888765      222      121 258899999998887653

>PLN02591 tryptophan synthase

Probab=97.82  E-value=0.0024  Score=63.24  Aligned_cols=186  Identities=18%  Similarity=0.200  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc-CCceeEEecchhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE-GARLPVLTPNLKVILQ  209 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~  209 (452)
                      .-+.+.-+++++.|.+.|+|.||+|+|-| |- -.|...           +.+.+++.++++. ..+.+.+.        
T Consensus        12 ~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~il--------   83 (250)
T PLN02591         12 DPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVL--------   83 (250)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEE--------
Confidence            35778899999999999999999998754 32 011111           1234455554432 12222111        


Q ss_pred             hhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949          210 RSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  289 (452)
Q Consensus       210 r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~  289 (452)
                        ++|-..   +   ++....+.++.++++|++.+-+..=.                ++...+..++++++|+.....++
T Consensus        84 --m~Y~N~---i---~~~G~~~F~~~~~~aGv~GviipDLP----------------~ee~~~~~~~~~~~gl~~I~lv~  139 (250)
T PLN02591         84 --FTYYNP---I---LKRGIDKFMATIKEAGVHGLVVPDLP----------------LEETEALRAEAAKNGIELVLLTT  139 (250)
T ss_pred             --EecccH---H---HHhHHHHHHHHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEEEeC
Confidence              111110   0   00112347889999999998887421                35556788999999998653222


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHH
Q 012949          290 CVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNI  365 (452)
Q Consensus       290 ~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANa  365 (452)
                           |   .++.+.+..+++...  | +..|...-++|.  ..|..+.++++.+|+. .+.|+-+    -+|.. -.++
T Consensus       140 -----P---tt~~~ri~~ia~~~~--gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v  204 (250)
T PLN02591        140 -----P---TTPTERMKAIAEASE--GFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHA  204 (250)
T ss_pred             -----C---CCCHHHHHHHHHhCC--CcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHH
Confidence                 2   234566666666532  3 445555677776  5589999999999985 4455554    34555 3466


Q ss_pred             HHHHHcCCCEE
Q 012949          366 LISLQMGISTV  376 (452)
Q Consensus       366 LaAl~aGa~~V  376 (452)
                      -..+++|||.|
T Consensus       205 ~~~~~~GADGv  215 (250)
T PLN02591        205 KQIAGWGADGV  215 (250)
T ss_pred             HHHHhcCCCEE
Confidence            66778888853

>PRK15108 biotin synthase; Provisional

Probab=97.81  E-value=0.018  Score=59.55  Aligned_cols=221  Identities=11%  Similarity=0.065  Sum_probs=139.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeE-Eecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPV-LTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~-l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.++.++.++.+.+.|++.|-++.. ..|.    ..+.+.+.+.++.+....+.. +..+.                 
T Consensus        75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------------  133 (345)
T PRK15108         75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGT-----------------  133 (345)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCc-----------------
Confidence            479999999999999999999977532 2331    123455555555443222221 11111                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                            ...+.+++.+++|++.+.+..-.++-+-... -..+    ++.-.+.++.|++.|+++...+.  +|.   +. 
T Consensus       134 ------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~----~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE-  197 (345)
T PRK15108        134 ------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRT----YQERLDTLEKVRDAGIKVCSGGI--VGL---GE-  197 (345)
T ss_pred             ------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCC----HHHHHHHHHHHHHcCCceeeEEE--EeC---CC-
Confidence                  1235888999999999999876665433222 1233    44445677999999998875555  442   22 


Q ss_pred             CHHHHHHHHHHHHHC--CcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEe-CCCcCcHHHHHHH
Q 012949          301 PPSKVAYVAKELHDM--GCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILI  367 (452)
Q Consensus       301 d~e~l~~~a~~l~~~--Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~-Hnd~GlA~ANaLa  367 (452)
                      ++++.++.+..+.+.  ..+.|.+      ..|    ...++|.+...+|..+|=.+|+..+.+-. -.+.|  --....
T Consensus       198 t~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~  275 (345)
T PRK15108        198 TVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMN--EQTQAM  275 (345)
T ss_pred             CHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhC--hhhHHH
Confidence            467888888888888  4455533      345    12467888999999888878873222211 11222  234688


Q ss_pred             HHHcCCCEEeecccC-CCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          368 SLQMGISTVDCSVAG-LGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       368 Al~aGa~~VD~Sv~G-lGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      |+.+||+-+  -+.+ +=.      ..| .+.++.+.+++.+|+.+
T Consensus       276 ~l~~Gan~~--~~g~~~lt------t~g-~~~~~~~~~i~~~g~~~  312 (345)
T PRK15108        276 CFMAGANSI--FYGCKLLT------TPN-PEEDKDLQLFRKLGLNP  312 (345)
T ss_pred             HHHcCCcEE--EECCcccc------CCC-CCHHHHHHHHHHcCCCc
Confidence            999999977  2222 112      234 68899999999988864

>TIGR00433 bioB biotin synthetase

Probab=97.72  E-value=0.022  Score=56.85  Aligned_cols=222  Identities=14%  Similarity=0.060  Sum_probs=129.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHh-ccCCceeEEe-cchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD-LEGARLPVLT-PNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..+.++.++.++.+.+.|+..+-+.. ...|.    ..+..+.++.+.+ .....+.+.+ .+.                
T Consensus        61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~~~~~~~i~~~~~~g~----------------  120 (296)
T TIGR00433        61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQIVEEMGLKTCATLGL----------------  120 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHHHHHhCCCeEEecCCC----------------
Confidence            35678889999999999998764422 11111    1122334444432 1112222211 111                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                             .+.+.++..+++|++.|.+..-.++...+. ++.  ...++...++++.+++.|+++...+.  +|. .+   
T Consensus       121 -------~~~e~l~~Lk~aG~~~v~i~~E~~~~~~~~-i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e---  184 (296)
T TIGR00433       121 -------LDPEQAKRLKDAGLDYYNHNLDTSQEFYSN-IIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE---  184 (296)
T ss_pred             -------CCHHHHHHHHHcCCCEEEEcccCCHHHHhh-ccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---
Confidence                   124588889999999998876555432222 221  12344555777889999999876665  453 22   


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          301 PPSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                      +.+.+.+.++.+.+.|++.|.+      +.|    ....++++..+++...+..+|...|-+=+=--.-+.---...|+.
T Consensus       185 t~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~  264 (296)
T TIGR00433       185 TVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFM  264 (296)
T ss_pred             CHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHH
Confidence            4678888999999999886642      243    123456788889999998898644422111111112111234899


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      +||+.+=+  +|+=-      -.|+.+-++=+.+++.+|
T Consensus       265 ~G~n~i~~--g~~~~------~~g~~~~~~~~~~~~~~~  295 (296)
T TIGR00433       265 AGANSIFV--GDYLT------TTGNPEEDKDKKLLAKLG  295 (296)
T ss_pred             hcCceEEE--cCccc------CCCCCCcHHHHHHHHHcC
Confidence            99987653  44444      567888844445566555

Catalyzes the last step of the biotin biosynthesis pathway.

>PRK08445 hypothetical protein; Provisional

Probab=97.71  E-value=0.012  Score=60.94  Aligned_cols=236  Identities=10%  Similarity=0.060  Sum_probs=139.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++.++.++...+.|...|-+-....|.     .+.   .++++.+++ .+..++.++.+.-...+.++.+      
T Consensus        72 ~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~------  140 (348)
T PRK08445         72 ILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISK------  140 (348)
T ss_pred             eCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhC------
Confidence            4799999999999999999977543322332     233   344445543 3456655554431100100000      


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEE-E-EecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVA-I-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~-i-~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                             ....+.+++.+++|++.+. + .=..+|...+.-  -++|.++.    .++++.|+++|+++.+.++  +|-.
T Consensus       141 -------~~~~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~  207 (348)
T PRK08445        141 -------ISIKEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV  207 (348)
T ss_pred             -------CCHHHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC
Confidence                   0113578899999999874 4 334455444332  26676655    3778999999999987776  4432


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcC-----EEE-----EcCCc--------CCCcHHHHHHHHHHHHHhCCC-ccEEEEeCC
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCF-----EIS-----LGDTI--------GVGTPGTVVPMLEAVMAVVPV-EKLAVHLHD  356 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad-----~I~-----L~DT~--------G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hn  356 (452)
                       +   ++++..+.+..+.+...+     .+.     -.+|-        ..++|.+.-.+++..|=.+|. ..|..-. -
T Consensus       208 -E---t~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~  282 (348)
T PRK08445        208 -E---NDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-V  282 (348)
T ss_pred             -C---CHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-c
Confidence             2   456666665555554432     221     12331        137788888888877766675 2222222 2


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..|..+  +..|+.+||+-+++|+..=---+.|....+ ...|+++.+.+..|..
T Consensus       283 ~~g~~~--~~~~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~  334 (348)
T PRK08445        283 TQGSYI--GQLALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI  334 (348)
T ss_pred             ccCHHH--HHHHHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence            345544  478899999999999864211111221233 4578888888877753

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.71  E-value=0.0071  Score=59.36  Aligned_cols=184  Identities=20%  Similarity=0.126  Sum_probs=109.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCC-cccccCCH-H--------HHHHHHHhccCCceeEEecchhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPK-WVPQLADA-R--------DVMEAVRDLEGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~-~~p~~~D~-e--------~v~~~i~~~~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ..+.++-.++++.|.+. ++.||+|.|- .|. -.|...++ .        ++++.+++..+..+-.++   .       
T Consensus        14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~---y-------   82 (244)
T PRK13125         14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMT---Y-------   82 (244)
T ss_pred             CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEE---e-------
Confidence            45788899999999998 9999999864 342 12322211 1        233333322222221111   0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                       |.+...        ...+.++.+.++|++.|-+.+-.-             |+.+...+.++++|++|+++...+.   
T Consensus        83 -~n~~~~--------~~~~~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~---  137 (244)
T PRK13125         83 -LEDYVD--------SLDNFLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS---  137 (244)
T ss_pred             -cchhhh--------CHHHHHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC---
Confidence             000000        012357889999999988853211             1234566788999999999764332   


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEE--EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHH
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISL  369 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I--~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl  369 (452)
                           -.++.+.+..+++..    -..+  .+.-..|.-.+..+.+.++.+++..+..+|.+    +.|. ...++-.++
T Consensus       138 -----p~T~~e~l~~~~~~~----~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~  204 (244)
T PRK13125        138 -----PKFPDLLIHRLSKLS----PLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDAL  204 (244)
T ss_pred             -----CCCCHHHHHHHHHhC----CCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHH
Confidence                 234566666666532    2233  33333465678889999999998876545543    6677 445666667


Q ss_pred             HcCCCEE
Q 012949          370 QMGISTV  376 (452)
Q Consensus       370 ~aGa~~V  376 (452)
                      ++|||.+
T Consensus       205 ~~gaD~v  211 (244)
T PRK13125        205 SAGADGV  211 (244)
T ss_pred             HcCCCEE
Confidence            9998854

>PRK06256 biotin synthase; Validated

Probab=97.69  E-value=0.0099  Score=60.71  Aligned_cols=221  Identities=15%  Similarity=0.088  Sum_probs=134.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++.++.++.+.+.|+..+-+-. ...|.    ..+.+.+.+.++.+   .+..+.+- .+.               
T Consensus        90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~-~g~---------------  149 (336)
T PRK06256         90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICAC-LGL---------------  149 (336)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEec-CCc---------------
Confidence            47899999999999999997665532 22221    12224455555543   23322211 110               


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                              ...+.++..+++|++.+.+..-.|+...+ +++.+  ...+...++++.+++.|+++...+.  +|. .   
T Consensus       150 --------l~~e~l~~LkeaG~~~v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g---  212 (336)
T PRK06256        150 --------LTEEQAERLKEAGVDRYNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G---  212 (336)
T ss_pred             --------CCHHHHHHHHHhCCCEEecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---
Confidence                    12357888999999999886544664433 23221  1344455677999999998876555  443 1   


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL  369 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl  369 (452)
                      -+.+.+.+.++.+.+.+++.|.+      +.|    ....+|.++.+++..+|-.+|...|-+-++-..-+.-. .-+++
T Consensus       213 Et~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~-~~~~~  291 (336)
T PRK06256        213 ESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSL-QPLGL  291 (336)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhh-HHHHh
Confidence            25788888899999999887765      343    23467889999999988888987676655543223222 12334


Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          370 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       370 ~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                       +||+.+=+.  ++=-      ..|+...+++- +++.+|+..
T Consensus       292 -~g~~~~~~g--~~lt------~~g~~~~~d~~-~~~~~g~~~  324 (336)
T PRK06256        292 -GGANSVIVG--NYLT------TVGQPATADLD-MIEDLGFEI  324 (336)
T ss_pred             -ccCceeeEC--Cccc------CCCCChHHHHH-HHHHCCCCc
Confidence             687744221  1111      35666665554 677788754

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.66  E-value=0.0065  Score=63.35  Aligned_cols=221  Identities=13%  Similarity=0.142  Sum_probs=133.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc----CCceeEEecchhhhhhhhhhhhhcc
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~----~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      ..++.++.++.++.+.+.|++.|-+...-.|.    ..+.+.+.+.++.+.    .+.+.+. |                
T Consensus       102 ~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g-~----------------  160 (371)
T PRK09240        102 KTLDEEEIEREMAAIKKLGFEHILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQ-P----------------  160 (371)
T ss_pred             ccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccC-C----------------
Confidence            35899999999999999999999775433332    235566666666543    2222110 0                


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeee
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNI----NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVV  292 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~----~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~  292 (452)
                               ...+.++..+++|++.+.+..-. ++.+.+.-.    ..+.++.+    +.++.|++.|++ |...++  +
T Consensus       161 ---------lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl----~~i~~a~~aG~~~v~~g~i--~  225 (371)
T PRK09240        161 ---------LSEEEYAELVELGLDGVTVYQETYNPATYAKHHLRGPKRDFEYRL----ETPERAGRAGIRKIGLGAL--L  225 (371)
T ss_pred             ---------CCHHHHHHHHHcCCCEEEEEEecCCHHHHHHhCcCCCCCCHHHHH----HHHHHHHHcCCCeeceEEE--e
Confidence                     12357889999999999998766 444332221    22555555    566899999997 765555  4


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCc------CEEE---EcCCcC------CCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGC------FEIS---LGDTIG------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~---L~DT~G------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      |-+.    +.+...+++..+.+.+.      ..|.   |-...|      .++|.++.++|..+|-.+|...|-+-+--.
T Consensus       226 Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~  301 (371)
T PRK09240        226 GLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVSDKQLVQLICAFRLFLPDVEISLSTRES  301 (371)
T ss_pred             cCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCCHHHHHHHHHHHHHHCcccccEEecCCC
Confidence            4332    24556666655554443      2343   334333      257889999999999888976665554432


Q ss_pred             cCcH---HHHHHHHHHcCCCEEeecccCCCCCCCCCCC-C--------CcccHHHHHHHHHcCCCCC
Q 012949          358 YGQS---LPNILISLQMGISTVDCSVAGLGGCPYAKGA-S--------GNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       358 ~GlA---~ANaLaAl~aGa~~VD~Sv~GlGecP~a~gr-a--------GNaalE~vv~~L~~~Gi~t  412 (452)
                      ..+.   +.....++.||   .-+.++|+..      . .        -.-+.++.+.+|+.+|+++
T Consensus       302 ~~lrd~~~~~~~~~~~ag---~~~~~G~y~~------~~~~~~qf~~~~~r~~~~~~~~i~~~g~~~  359 (371)
T PRK09240        302 PEFRDNLIPLGITKMSAG---SSTQPGGYAD------DHKELEQFEISDDRSVEEVAAALRAKGLQP  359 (371)
T ss_pred             HHHHHHHHhhcceeeccC---ccCCCCCcCC------CCCCcCCccCCCCCCHHHHHHHHHHCCCee
Confidence            2111   11112333444   2234455443      1 1        2468899999999999875

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=97.63  E-value=0.0022  Score=60.74  Aligned_cols=172  Identities=19%  Similarity=0.229  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++-+++++.| +-|++.||+|+.-...      ..-+.++.+++. ++..+.+   .++     ++   ..     
T Consensus         8 ~~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~---d~k-----~~---d~-----   64 (206)
T TIGR03128         8 LLDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLA---DLK-----TM---DA-----   64 (206)
T ss_pred             CCCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEE---EEe-----ec---cc-----
Confidence            36788999999999 8999999998432111      112455566543 3322211   110     00   00     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            ....++.+.++|++.|.+..-...               ..+.+++++++++|+++...++.           +
T Consensus        65 ------~~~~~~~~~~~Gad~i~vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~~-----------~  112 (206)
T TIGR03128        65 ------GEYEAEQAFAAGADIVTVLGVADD---------------ATIKGAVKAAKKHGKEVQVDLIN-----------V  112 (206)
T ss_pred             ------hHHHHHHHHHcCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCEEEEEecC-----------C
Confidence                  001578899999998876543221               23457788999999988754321           1


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ....+.++.+.+.|+|.|.+.     ++.+...+    +.++.+++.++..++.+=    =|.-..|.-..+++||+.|-
T Consensus       113 ~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~----~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~  184 (206)
T TIGR03128       113 KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPF----EDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVI  184 (206)
T ss_pred             CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH----HHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEE
Confidence            113334455567799988774     12222233    345555665555444432    35566788888999999665


Q ss_pred             e
Q 012949          378 C  378 (452)
Q Consensus       378 ~  378 (452)
                      .
T Consensus       185 v  185 (206)
T TIGR03128       185 V  185 (206)
T ss_pred             E
Confidence            4

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK08444 hypothetical protein; Provisional

Probab=97.62  E-value=0.019  Score=59.67  Aligned_cols=239  Identities=14%  Similarity=0.148  Sum_probs=143.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.++.++.+.+.|+..|-+-+...|.. + +....++++.+++ .+++.+.+++|.--.-+.+..+  .      
T Consensus        79 ~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~-~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g--~------  148 (353)
T PRK08444         79 TMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY-G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFG--K------  148 (353)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC-C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcC--C------
Confidence            58999999999999999999999876655542 1 1112345555554 3566676666532111111111  0      


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHH-----HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-----SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-----~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                           ...+.+++.+++|++.+.-  ..-+++     .+.-.++..   -++..++.+.|+++|+++...+++  |-. +
T Consensus       149 -----~~~e~l~~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~~---~~~~~~i~~~a~~~Gi~~~sg~l~--G~g-E  215 (353)
T PRK08444        149 -----SYEEVLEDMLEYGVDSMPG--GGAEIFDEEVRKKICKGKVS---SERWLEIHKYWHKKGKMSNATMLF--GHI-E  215 (353)
T ss_pred             -----CHHHHHHHHHHhCcccCCC--CCchhcCHHHHhhhCCCCCC---HHHHHHHHHHHHHcCCCccceeEE--ecC-C
Confidence                 1235778899999986542  222222     121122332   244557779999999999877774  422 2


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCE------EEE----cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC-cCcHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFE------ISL----GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL  362 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~------I~L----~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd-~GlA~  362 (452)
                         ++++.++.+..+.+...+.      |-+    .+|    ....+|.+.-.+++..|=.+|++   =|..-. .-++.
T Consensus       216 ---t~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~  289 (353)
T PRK08444        216 ---NREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTL  289 (353)
T ss_pred             ---CHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcH
Confidence               4667777776666654432      223    344    22467888888887777666653   132222 12456


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  411 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~  411 (452)
                      ..+..||..||+=+++|+..====|.|+..++ ..+.+++...++..|..
T Consensus       290 ~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~  339 (353)
T PRK08444        290 NLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI  339 (353)
T ss_pred             HHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence            78889999999999999743111112221233 46789999999887764

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.49  E-value=0.01  Score=59.03  Aligned_cols=162  Identities=20%  Similarity=0.224  Sum_probs=96.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhcc----CCceeEEe-cchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLE----GARLPVLT-PNLK  205 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~----~~~l~~l~-~~~~  205 (452)
                      ..+.+.-.++++.|.+.|++.||+|+|-| |- -.|...           +.+++++.++++.    ++.+..|+ -|.-
T Consensus        22 ~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i  101 (258)
T PRK13111         22 DPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPI  101 (258)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHH
Confidence            35788999999999999999999999754 32 011111           2234455554432    22222222 1110


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                              |+           ....+.++.++++|++.+.+..=            .    ++...+.++.++++|+...
T Consensus       102 --------~~-----------~G~e~f~~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I  146 (258)
T PRK13111        102 --------FQ-----------YGVERFAADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLI  146 (258)
T ss_pred             --------hh-----------cCHHHHHHHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEE
Confidence                    10           11234789999999999988531            1    3566788899999999865


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEE
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLA  351 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~  351 (452)
                      .-+     .|   .++.+.+..+++..  -| +..+.+.-++|.  ..|..+.++++.+++..+ .++-
T Consensus       147 ~lv-----ap---~t~~eri~~i~~~s--~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~~-~pv~  204 (258)
T PRK13111        147 FLV-----AP---TTTDERLKKIASHA--SGFVYYVSRAGVTGARSADAADLAELVARLKAHTD-LPVA  204 (258)
T ss_pred             EEe-----CC---CCCHHHHHHHHHhC--CCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcCC-CcEE
Confidence            211     12   23455666555542  22 333444455555  567789999999998653 3443

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.45  E-value=0.012  Score=60.71  Aligned_cols=212  Identities=16%  Similarity=0.162  Sum_probs=135.0

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRS  211 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~  211 (452)
                      ++.+..+.  .++.+....++++-.+.+.+.|=-.++..-++.+    .+.+...++.. .... +++-+. +.      
T Consensus        15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValH-LD------   83 (347)
T PRK09196         15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMH-QD------   83 (347)
T ss_pred             HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEE-CC------
Confidence            44455443  4889999999999999999987765543322222    22222333322 1121 232221 00      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                          .+.          ..+.+.+|+++|..-|.+=.|.-+   ..|...+.+|.++.-++++++|+..|+.|.+.|-..
T Consensus        84 ----Hg~----------~~e~i~~ai~~GftSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~v  146 (347)
T PRK09196         84 ----HGN----------SPATCQRAIQLGFTSVMMDGSLKA---DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCL  146 (347)
T ss_pred             ----CCC----------CHHHHHHHHHcCCCEEEecCCCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence                110          235788999999998887443210   123344678999999999999999999999888765


Q ss_pred             ecCC-------C-----------CCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC----cHH---HHHHHHHHHHHh
Q 012949          292 VGCP-------V-----------EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAV  344 (452)
Q Consensus       292 ~g~p-------~-----------~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~----~P~---~v~~li~~l~~~  344 (452)
                      -|.+       +           ...++|+...++++   +.|+|.+.++  -.=|.-    .|.   -=.++++.+++.
T Consensus       147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~  223 (347)
T PRK09196        147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHAR  223 (347)
T ss_pred             cCccccccccccCcccccccchhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhc
Confidence            3332       1           11467777666664   4478855443  233333    242   234567888888


Q ss_pred             CCCccEEEEeCCCc-------------------CcHHHHHHHHHHcCCCEEee
Q 012949          345 VPVEKLAVHLHDTY-------------------GQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       345 ~p~~~l~vH~Hnd~-------------------GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +|++||.+|.=...                   |........|+..|+.-|+.
T Consensus       224 v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi  276 (347)
T PRK09196        224 LPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNI  276 (347)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEe
Confidence            87679999987754                   77889999999999987754

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=97.45  E-value=0.014  Score=59.04  Aligned_cols=195  Identities=19%  Similarity=0.210  Sum_probs=129.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+....+++.-.+.+-+.|--.+...-++.+.   .+.+...++..   .+..+++.+.- .        +      
T Consensus        25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~~---~~~~~~~~~~~a~~~~~~vPV~lHL-D--------H------   86 (293)
T PRK07315         25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMGG---YKVCKNLIENLVESMGITVPVAIHL-D--------H------   86 (293)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCc---HHHHHHHHHHHHHHcCCCCcEEEEC-C--------C------
Confidence            47889999999999999999887765432222221   12223333321   22233332211 1        1      


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+++|++.|++.|.+=.+.          .+.+|.++..++++++|+..|..|.+.|-...|.++.   
T Consensus        87 -------~~~~~i~~ai~~GftSVm~d~S~----------l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g  149 (293)
T PRK07315         87 -------GHYEDALECIEVGYTSIMFDGSH----------LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIG  149 (293)
T ss_pred             -------CCHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccC
Confidence                   11347889999999988875432          3568899999999999999999998777765443442   


Q ss_pred             -CC-CCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          298 -GA-IPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       298 -~r-~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                       +. ++|+...++.    +.|+|.|.++  -.=|.-   +|.-=.++++.+++.++++||.+|.-.  |....|...+++
T Consensus       150 ~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~  223 (293)
T PRK07315        150 KGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIK  223 (293)
T ss_pred             ccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHH
Confidence             22 6777765544    5699988876  331221   343345678888888765688877754  788899999999


Q ss_pred             cCCCEEeec
Q 012949          371 MGISTVDCS  379 (452)
Q Consensus       371 aGa~~VD~S  379 (452)
                      .|++-|+..
T Consensus       224 ~Gi~KiNv~  232 (293)
T PRK07315        224 LGVAKVNVN  232 (293)
T ss_pred             cCCCEEEEc
Confidence            999977653

>TIGR01496 DHPS dihydropteroate synthase

Probab=97.44  E-value=0.018  Score=57.10  Aligned_cols=197  Identities=20%  Similarity=0.259  Sum_probs=106.9

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----Hhcc---CCceeEE
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLE---GARLPVL  200 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~---~~~l~~l  200 (452)
                      |+..|+ |-..--+..++.++.++.++.+.+.|.+.|++|...+ |. .+.. +.++.++++    +.+.   ++.+++=
T Consensus         5 ilN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~-~~~i-~~~~E~~rl~~~v~~~~~~~~~plsiD   81 (257)
T TIGR01496         5 IVNVTP-DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPG-ADRV-SPEEELNRVVPVIKALRDQPDVPISVD   81 (257)
T ss_pred             EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence            444444 4444434557889999999999999999999996443 32 2222 333333333    3221   3333322


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      +.+                          .+.+++|++.|++.|.=.....                  ..++++.+++.
T Consensus        82 T~~--------------------------~~vi~~al~~G~~iINsis~~~------------------~~~~~~l~~~~  117 (257)
T TIGR01496        82 TYR--------------------------AEVARAALEAGADIINDVSGGQ------------------DPAMLEVAAEY  117 (257)
T ss_pred             CCC--------------------------HHHHHHHHHcCCCEEEECCCCC------------------CchhHHHHHHc
Confidence            222                          2478889999988665332210                  12444567788


Q ss_pred             CCcEEEEEEeeecCCCCCCC----------CHHHHHHHHHHHHHCCc--CEEEEcCCcCCC---cHHHHHHHHHHHHHhC
Q 012949          281 SIPVRGYVSCVVGCPVEGAI----------PPSKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAVV  345 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~----------d~e~l~~~a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~li~~l~~~~  345 (452)
                      |..+.  ++..-|.|.....          -.+++.+.++.+.++|+  +.|.| |. |++   ++++-.++++.++.--
T Consensus       118 ~~~vV--~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DP-g~gf~ks~~~~~~~l~~i~~l~  193 (257)
T TIGR01496       118 GVPLV--LMHMRGTPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIIL-DP-GIGFGKTPEHNLELLKHLEEFV  193 (257)
T ss_pred             CCcEE--EEeCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-EC-CCCcccCHHHHHHHHHHHHHHH
Confidence            88776  3443333322100          11345566777888998  46766 76 443   3445555555554310


Q ss_pred             -CCcc--EEE------------EeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          346 -PVEK--LAV------------HLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       346 -p~~~--l~v------------H~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                       ++.|  +++            -..+..+..++-+..|++.||++|
T Consensus       194 ~~~~p~l~G~SrkSfig~v~~~~~~~r~~~t~~~~~~a~~~Ga~ii  239 (257)
T TIGR01496       194 ALGYPLLVGASRKSFIGALLGTPPEERLEGTLAASAYAVQKGADIV  239 (257)
T ss_pred             hCCCcEEEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHcCCCEE
Confidence             1222  222            112333344555566778888866

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK05927 hypothetical protein; Provisional

Probab=97.41  E-value=0.026  Score=58.57  Aligned_cols=236  Identities=14%  Similarity=0.059  Sum_probs=135.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++.++.++...+.|+..+-+.+...|.     .+.+.+.+.++.+    +++.+-++.+..-..+.+..+.     
T Consensus        75 ~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~-----  144 (350)
T PRK05927         75 LLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGI-----  144 (350)
T ss_pred             ccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCC-----
Confidence            6899999999999999999999887666654     2344444444432    3343323332110000000000     


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEE---EEecCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVA---IFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~---i~~s~Sd~~~~~~~~~-s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                              ...+.+++.+++|++.+.   .-+..+.+...--.++ +.++=    .+.++.|+++|+++...+++-.   
T Consensus       145 --------~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~r----l~~i~~A~~lGi~~~sg~l~G~---  209 (350)
T PRK05927        145 --------STEQALERLWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGW----IQFHKLAHRLGFRSTATMMFGH---  209 (350)
T ss_pred             --------CHHHHHHHHHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHH----HHHHHHHHHcCCCcCceeEEee---
Confidence                    123578888999997655   2233333322211222 33433    3677999999999987777532   


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcC--EEE--Ec------CCc---C---CCcHHHHHHHHHHHHHhCCCccEEEEeC-CCc
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCF--EIS--LG------DTI---G---VGTPGTVVPMLEAVMAVVPVEKLAVHLH-DTY  358 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad--~I~--L~------DT~---G---~~~P~~v~~li~~l~~~~p~~~l~vH~H-nd~  358 (452)
                      .+   ++++..+.+..+.+.+-+  .|.  ++      +|-   .   ..+|.++-.+++..|-.+|+++   |.- .-.
T Consensus       210 gE---t~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~---~i~~~w~  283 (350)
T PRK05927        210 VE---SPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFD---HIAASWF  283 (350)
T ss_pred             CC---CHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCC---cccCCcc
Confidence            12   355555555555544311  111  33      442   1   4788888888888887778643   221 123


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      .++...+..||.+||+-+++++..====|.|+...+ ...+++...++..|..
T Consensus       284 ~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~  335 (350)
T PRK05927        284 GEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI  335 (350)
T ss_pred             ccCHHHHHHHHhCCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence            355567778999999999988743111122222333 3578888888877754

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=97.41  E-value=0.019  Score=58.75  Aligned_cols=200  Identities=16%  Similarity=0.199  Sum_probs=132.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c--CCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--GARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~--~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..+.+....+++.-.+.+-+.|--.++..-++.+. .-...+...++.. .  +.++++.+.. .        +  +   
T Consensus        31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHL-D--------H--g---   95 (321)
T PRK07084         31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHL-D--------H--G---   95 (321)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEEC-C--------C--C---
Confidence            47889999999999999999877665432222221 0012223333322 1  1133332211 0        0  1   


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+.+|+++|..-|.+=.|.          .+.++.++.-++++++|+..|+.|.+.|-..-|.++.   
T Consensus        96 -------~~~e~i~~ai~~GftSVMiD~S~----------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~  158 (321)
T PRK07084         96 -------DSFELCKDCIDSGFSSVMIDGSH----------LPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSA  158 (321)
T ss_pred             -------CCHHHHHHHHHcCCCEEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccC
Confidence                   12358899999999998875442          2468899999999999999999999888876555443   


Q ss_pred             -C--CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC-------cHHHHHHHHHHHHHhCCCccEEEEeCC---------
Q 012949          298 -G--AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHD---------  356 (452)
Q Consensus       298 -~--r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~-------~P~~v~~li~~l~~~~p~~~l~vH~Hn---------  356 (452)
                       .  .++|+...++++.   .|+|.+.++  -.=|.-       .|.-=.++++.+++.++++||.+|.=.         
T Consensus       159 ~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~  235 (321)
T PRK07084        159 EHHTYTQPEEVEDFVKK---TGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKT  235 (321)
T ss_pred             cccccCCHHHHHHHHHH---hCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHH
Confidence             1  4678777777654   588855443  333433       244446788899998876799999877         


Q ss_pred             ----------CcCcHHHHHHHHHHcCCCEEee
Q 012949          357 ----------TYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       357 ----------d~GlA~ANaLaAl~aGa~~VD~  378 (452)
                                ++|..-.....|+..|+.-|+.
T Consensus       236 ~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi  267 (321)
T PRK07084        236 INEYGGKLKDAIGIPEEQLRKAAKSAVCKINI  267 (321)
T ss_pred             HHHhcCccccCCCCCHHHHHHHHHcCCceecc
Confidence                      3488899999999999886643

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=97.39  E-value=0.016  Score=60.39  Aligned_cols=220  Identities=15%  Similarity=0.149  Sum_probs=127.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC----CceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG----ARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~----~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++..+.++.+.+.|+..|-+.+...|.    ..+.+.+.+.++.+..    +.+.+ .|                 
T Consensus       102 ~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei-~~-----------------  159 (366)
T TIGR02351       102 KLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEV-QP-----------------  159 (366)
T ss_pred             cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCcccccc-cc-----------------
Confidence            4799999999999999999988876443332    2355667777665432    22111 01                 


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCC-hHH-Hhhh---cCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeec
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASAS-EAF-SKSN---INCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVG  293 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~-~~~~---~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g  293 (452)
                              .+.+.++..+++|++++.+..-.. +.. .+..   ...+.++.+    +.++.|++.|++ |...+.  +|
T Consensus       160 --------lt~e~~~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl----~~i~~a~~aG~~~v~~g~i--~G  225 (366)
T TIGR02351       160 --------LNEEEYKKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRL----NTPERAAKAGMRKIGIGAL--LG  225 (366)
T ss_pred             --------CCHHHHHHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHH----HHHHHHHHcCCCeeceeEE--Ee
Confidence                    134588999999999999987654 332 2211   122455444    566999999998 665455  44


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCc------CEEE---Ec------CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGC------FEIS---LG------DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Ga------d~I~---L~------DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      -+. +   ......++..+...+.      ..|.   |-      .....++|.++.++|..+|-.+|...|-+-+--..
T Consensus       226 l~e-~---~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~  301 (366)
T TIGR02351       226 LDD-W---RTDAFFTAYHLRYLQKKYWKTEISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESK  301 (366)
T ss_pred             Cch-h---HHHHHHHHHHHHHHHHHcCCCCccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCH
Confidence            432 2   2333333333332222      2222   22      22355778999999999999889766665544321


Q ss_pred             CcH---HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC---------cccHHHHHHHHHcCCCCC
Q 012949          359 GQS---LPNILISLQMGISTVDCSVAGLGGCPYAKGASG---------NVATEDVVYMLSGLGVET  412 (452)
Q Consensus       359 GlA---~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG---------NaalE~vv~~L~~~Gi~t  412 (452)
                      -+.   +.....++.+|..   +.++|+-.      ..|         +-++++++.+++.+|+.+
T Consensus       302 ~lrd~~~~~~~~~~~a~~~---~~~G~y~~------~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~  358 (366)
T TIGR02351       302 KFRDNVIPLGITKMSAGSS---TEPGGYSS------EKKGLEQFEISDERSVAEVEEDLRSKGLQP  358 (366)
T ss_pred             HHHHHHHhhcceeeccCcc---cCCCCcCC------CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence            111   0111222222211   22333332      223         378899999999988875

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.37  E-value=0.026  Score=54.56  Aligned_cols=153  Identities=21%  Similarity=0.319  Sum_probs=103.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc---CCceeEEecchhhhhhhhhhhhhccch
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE---GARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~---~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .+.++-+++++.|.+.|++.+|+++- +|       +..+.++.+++ ..   ++.+.+-+  .                
T Consensus        22 ~~~~~a~~~~~al~~~Gi~~iEit~~-~~-------~a~~~i~~l~~~~~~~p~~~vGaGT--V----------------   75 (213)
T PRK06552         22 ESKEEALKISLAVIKGGIKAIEVTYT-NP-------FASEVIKELVELYKDDPEVLIGAGT--V----------------   75 (213)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECC-Cc-------cHHHHHHHHHHHcCCCCCeEEeeee--C----------------
Confidence            38899999999999999999999974 33       23455666653 21   23333211  0                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                             .+.++++.|+++|.+.+.  .+.-+                  .+++++|++.|+.+.         |  +-.
T Consensus        76 -------~~~~~~~~a~~aGA~Fiv--sP~~~------------------~~v~~~~~~~~i~~i---------P--G~~  117 (213)
T PRK06552         76 -------LDAVTARLAILAGAQFIV--SPSFN------------------RETAKICNLYQIPYL---------P--GCM  117 (213)
T ss_pred             -------CCHHHHHHHHHcCCCEEE--CCCCC------------------HHHHHHHHHcCCCEE---------C--CcC
Confidence                   134689999999999765  22111                  367799999999864         1  334


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          301 PPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +++.+..    +.++|+|.|.+  ++..|   |.    .++.++..+|.++|.    -+=|.-..|.-.-+.+|++.|
T Consensus       118 T~~E~~~----A~~~Gad~vklFPa~~~G---~~----~ik~l~~~~p~ip~~----atGGI~~~N~~~~l~aGa~~v  180 (213)
T PRK06552        118 TVTEIVT----ALEAGSEIVKLFPGSTLG---PS----FIKAIKGPLPQVNVM----VTGGVNLDNVKDWFAAGADAV  180 (213)
T ss_pred             CHHHHHH----HHHcCCCEEEECCcccCC---HH----HHHHHhhhCCCCEEE----EECCCCHHHHHHHHHCCCcEE
Confidence            5555543    35699999998  34433   43    366777778865554    345777899999999999865

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.34  E-value=0.051  Score=58.53  Aligned_cols=232  Identities=15%  Similarity=0.201  Sum_probs=138.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCc-----eeEEecchhhhhhhhhhhhhc
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR-----LPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~-----l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..++.++.++-++.+.+.|++.+-+-+.-.|.    -.+.+.+.+.++.+...+     +..+.-+..          + 
T Consensus       113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~----~~~~eyi~e~i~~I~~~~~~~g~i~~v~inig----------~-  177 (469)
T PRK09613        113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPP----NCDIEYILESIKTIYSTKHGNGEIRRVNVNIA----------P-  177 (469)
T ss_pred             eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCC----CCCHHHHHHHHHHHHHhccccCcceeeEEEee----------c-
Confidence            35899999999999999999998886544432    134566666666543211     100000000          0 


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC--hHHHhhhc---CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS--EAFSKSNI---NCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV  291 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~---~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~  291 (452)
                                .+.++++..+++|++.+.++--+.  +.+.+...   ..+.++-+    +.++.|++.|++ |...+.  
T Consensus       178 ----------lt~eey~~LkeaGv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl----~t~~rA~~aGi~~Vg~G~L--  241 (469)
T PRK09613        178 ----------TTVENYKKLKEAGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRL----TAMDRAMEAGIDDVGIGVL--  241 (469)
T ss_pred             ----------CCHHHHHHHHHcCCCEEEeccccCCHHHHHhcCCCCCCCCHHHHH----HHHHHHHHcCCCeeCeEEE--
Confidence                      134689999999999999986542  23332222   23455444    556899999997 764444  


Q ss_pred             ecCCCCCCCCHHHHHHHHHHH---HHCCcCEEEEc------CC-c----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          292 VGCPVEGAIPPSKVAYVAKEL---HDMGCFEISLG------DT-I----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       292 ~g~p~~~r~d~e~l~~~a~~l---~~~Gad~I~L~------DT-~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      ||.++ ++.+.-.+..-++.+   ...|++.|.++      +| .    -..++.++..+|..+|=.+|...|-+=.+..
T Consensus       242 ~GLge-~~~E~~~l~~hl~~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~  320 (469)
T PRK09613        242 FGLYD-YKFEVLGLLMHAEHLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRES  320 (469)
T ss_pred             EcCCC-CHHHHHHHHHHHHHHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCC
Confidence            55443 222221222222222   12356666654      43 2    2367889999999999889987777777776


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecc-cCCCCCCCCCC----------CCCcccHHHHHHHHHcCCCCC
Q 012949          358 YGQSLPNILISLQMGISTVDCSV-AGLGGCPYAKG----------ASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv-~GlGecP~a~g----------raGNaalE~vv~~L~~~Gi~t  412 (452)
                      ..+  =  -..+..||..+++.. .|.|+  |+..          -+=+-++++|+..|...|+.+
T Consensus       321 ~~~--r--~~~~~~gvt~~sags~t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~p  380 (469)
T PRK09613        321 AEL--R--REVLELGVSQISAGSRTGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYIP  380 (469)
T ss_pred             HHH--H--HHHHhhcceeecccccCCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCeE
Confidence            442  2  234567888885322 24444  3211          123567899999998777653

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.31  E-value=0.0071  Score=60.17  Aligned_cols=185  Identities=18%  Similarity=0.248  Sum_probs=106.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-cccc-----------CCHHHHHHHHHhc----cCCceeEEecchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQL-----------ADARDVMEAVRDL----EGARLPVLTPNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~-----------~D~e~v~~~i~~~----~~~~l~~l~~~~~~  206 (452)
                      ..+.+.-.++++.|.+.|+|.||+|+|-| |.. .|..           .+.+++++.++++    ++..+..|+     
T Consensus        20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~-----   94 (259)
T PF00290_consen   20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT-----   94 (259)
T ss_dssp             SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-----
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe-----
Confidence            45788999999999999999999999754 320 1111           1224444444432    233333332     


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |-..   +   ++....+.++.+.++|++.+-|.+-.-                +...+..+.+++.|+....
T Consensus        95 -------Y~N~---i---~~~G~e~F~~~~~~aGvdGlIipDLP~----------------ee~~~~~~~~~~~gl~~I~  145 (259)
T PF00290_consen   95 -------YYNP---I---FQYGIERFFKEAKEAGVDGLIIPDLPP----------------EESEELREAAKKHGLDLIP  145 (259)
T ss_dssp             --------HHH---H---HHH-HHHHHHHHHHHTEEEEEETTSBG----------------GGHHHHHHHHHHTT-EEEE
T ss_pred             -------eccH---H---hccchHHHHHHHHHcCCCEEEEcCCCh----------------HHHHHHHHHHHHcCCeEEE
Confidence                   1110   0   001123477889999999988875321                1223556788999998643


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      -++     |   .++++.+.++++..... +..+...-++|.-  .|.++.++++.+|+.. +.|+.+=    +|.....
T Consensus       146 lv~-----p---~t~~~Ri~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e  211 (259)
T PF00290_consen  146 LVA-----P---TTPEERIKKIAKQASGF-IYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPE  211 (259)
T ss_dssp             EEE-----T---TS-HHHHHHHHHH-SSE-EEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHH
T ss_pred             EEC-----C---CCCHHHHHHHHHhCCcE-EEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHH
Confidence            222     2   24567777777654311 3444456666665  4788999999999976 4455542    4666666


Q ss_pred             HHHHHHcCCCEE
Q 012949          365 ILISLQMGISTV  376 (452)
Q Consensus       365 aLaAl~aGa~~V  376 (452)
                      -...+..|||.|
T Consensus       212 ~~~~~~~~aDGv  223 (259)
T PF00290_consen  212 QAKKLAAGADGV  223 (259)
T ss_dssp             HHHHHHTTSSEE
T ss_pred             HHHHHHccCCEE
Confidence            667777887744

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.29  E-value=0.021  Score=53.73  Aligned_cols=170  Identities=19%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.++-.++++.|.+. ++.||+|.+...      ....+.++.+++. ++..+-+..  .-         .+.     
T Consensus         9 ~~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~--~v---------~~~-----   65 (202)
T cd04726           9 LLDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADL--KT---------ADA-----   65 (202)
T ss_pred             CCCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEE--Ee---------ccc-----
Confidence            36788999999999999 999999854211      1112445566543 444332211  00         000     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            ....++.++++|++.+.+-....+               +.+.++++++|+.|+++.+.+.        +..++
T Consensus        66 ------~~~~~~~~~~aGad~i~~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~  116 (202)
T cd04726          66 ------GALEAEMAFKAGADIVTVLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDP  116 (202)
T ss_pred             ------cHHHHHHHHhcCCCEEEEEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCH
Confidence                  001468899999999888664322               2345678899999988753222        22345


Q ss_pred             HHHHHHHHHHHHCCcCEEEE-c----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISL-G----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L-~----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.+.+    +...|+|.+.+ .    .+.|   +....+.++.+++. ++.++.+=+    |-...|...++++||+.|=
T Consensus       117 ~e~~~----~~~~~~d~v~~~~~~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vv  184 (202)
T cd04726         117 EKRAK----LLKLGVDIVILHRGIDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVI  184 (202)
T ss_pred             HHHHH----HHHCCCCEEEEcCcccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEE
Confidence            54443    55679998877 2    2332   12234455555543 334555533    6666899999999999653

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=97.26  E-value=0.013  Score=57.49  Aligned_cols=182  Identities=19%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCC-CC----cccccC--------CHHHHHHHHHhcc---CCceeEEec-chhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PK----WVPQLA--------DARDVMEAVRDLE---GARLPVLTP-NLKVI  207 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~----~~p~~~--------D~e~v~~~i~~~~---~~~l~~l~~-~~~~~  207 (452)
                      -+.+.-.++++.|.++|++.||+|+|-| |.    .++...        ..+..++.++.+.   +..+-.|+- +.-  
T Consensus        11 P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~--   88 (242)
T cd04724          11 PDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPI--   88 (242)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHH--
Confidence            4668889999999999999999998643 21    111000        0012333333332   222222221 110  


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                            |+.           ...+.++.++++|++.+-+..-    +            ++...+.++.+|++|++....
T Consensus        89 ------~~~-----------G~~~fi~~~~~aG~~giiipDl----~------------~ee~~~~~~~~~~~g~~~i~~  135 (242)
T cd04724          89 ------LQY-----------GLERFLRDAKEAGVDGLIIPDL----P------------PEEAEEFREAAKEYGLDLIFL  135 (242)
T ss_pred             ------HHh-----------CHHHHHHHHHHCCCcEEEECCC----C------------HHHHHHHHHHHHHcCCcEEEE
Confidence                  000           0124788899999998887531    1            245568889999999987532


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-H
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-N  364 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-N  364 (452)
                      +.     |   .++.+.+..+++...+. +..+.+.-+.|.-+  +..+.+.++.+++. .+.+|.+    +.|.-.. +
T Consensus       136 i~-----P---~T~~~~i~~i~~~~~~~-vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v----ggGI~~~e~  201 (242)
T cd04724         136 VA-----P---TTPDERIKKIAELASGF-IYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV----GFGISTPEQ  201 (242)
T ss_pred             eC-----C---CCCHHHHHHHHhhCCCC-EEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE----EccCCCHHH
Confidence            22     2   13455555555432211 33444566666644  57788999999985 4456666    5666655 6


Q ss_pred             HHHHHHcCCCEE
Q 012949          365 ILISLQMGISTV  376 (452)
Q Consensus       365 aLaAl~aGa~~V  376 (452)
                      +-..+++ ||.+
T Consensus       202 ~~~~~~~-ADgv  212 (242)
T cd04724         202 AAEVAKY-ADGV  212 (242)
T ss_pred             HHHHHcc-CCEE
Confidence            6666666 7743

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.24  E-value=0.066  Score=49.35  Aligned_cols=180  Identities=19%  Similarity=0.158  Sum_probs=106.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccC--CceeEEe-cchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEG--ARLPVLT-PNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~--~~l~~l~-~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.+.-.++++.|.+.|++.|++..              ++++.+. ...+  ..+.+-+ .+..        + ....+ 
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~--------~-~~~~~-   66 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTG--------L-TTTEV-   66 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCC--------C-CcHHH-
Confidence            788899999999999999999963              3344443 2333  2222212 1100        0 00011 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                             ..+.++.|.+.|++.+.+..+.   +.  ....+.++.++.+.++++.+ +.++++..|..     |... .+
T Consensus        67 -------~~~~a~~a~~~Gad~i~v~~~~---~~--~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~  127 (201)
T cd00945          67 -------KVAEVEEAIDLGADEIDVVINI---GS--LKEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KT  127 (201)
T ss_pred             -------HHHHHHHHHHcCCCEEEEeccH---HH--HhCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CC
Confidence                   2347788999999999886542   11  11112455566666666655 56888876554     2222 47


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ++.+.++++.+.+.|++.|  +++.|..    ....+.++++.+..   ..++.+-.-.+   ...+...++.+|++.+
T Consensus       128 ~~~~~~~~~~~~~~g~~~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~  198 (201)
T cd00945         128 ADEIAKAARIAAEAGADFI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI  198 (201)
T ss_pred             HHHHHHHHHHHHHhCCCEE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence            8888888888888888865  5666643    56666655544321   22444443222   3577888888998865

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=97.21  E-value=0.015  Score=57.43  Aligned_cols=243  Identities=13%  Similarity=0.098  Sum_probs=123.3

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      .+.++.+.++|++.||+.......+.....+   ..++.+.+++..+..+++..+....       +.....+.-+....
T Consensus        13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~r~~~~~   85 (279)
T cd00019          13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLIN-------LASPDKEKREKSIE   85 (279)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceec-------cCCCCHHHHHHHHH
Confidence            4456677899999999965332222111112   2223333322224455554432110       00000000000000


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      ...+-++.|.+.|++.|.+.....+.   .......+..++.+.+++++|++.|+.+.  |....+.....-.+++.+.+
T Consensus        86 ~~~~~i~~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~  160 (279)
T cd00019          86 RLKDEIERCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKE  160 (279)
T ss_pred             HHHHHHHHHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHH
Confidence            11346788888999988875543220   00011235566778888888999998764  44322111111235566666


Q ss_pred             HHHHHHHCCcCEE-EEcCCcC-----CC--cHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          308 VAKELHDMGCFEI-SLGDTIG-----VG--TPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       308 ~a~~l~~~Gad~I-~L~DT~G-----~~--~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +++.+-.  -+.+ .+-|+.=     ..  +|++..+.++.+.+.++. -...+|.||..+.-.         +      
T Consensus       161 li~~v~~--~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~------  223 (279)
T cd00019         161 IIDLIKE--KPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S------  223 (279)
T ss_pred             HHHhcCC--CCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C------
Confidence            6665530  2222 1224322     21  356677788887776642 237899999765310         0      


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHHcCCC-CCCC---------ChhhHHHHHHHHH
Q 012949          379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGV-ETNV---------DLRKLMLAGDFIN  427 (452)
Q Consensus       379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi-~t~i---------Dl~~L~~la~~v~  427 (452)
                         +. .....+ +.|..+...++..|+..|+ +-.+         +...+.+..+++.
T Consensus       224 ---~~-~~~~~~-G~G~id~~~~l~~L~~~~y~~g~~~lE~~~~~~~~~~~~~~~~~~~  277 (279)
T cd00019         224 ---GK-DRHEPI-GEGDIDGEELFKELKKDPYQNIPLILETPSENRDAAKIKKEIKLLR  277 (279)
T ss_pred             ---CC-ccccCC-CCCCcCCHHHHHHHHhCcccCCCEEEeCCCCCccchhHHHHHHHHh
Confidence               00 011222 2678999999999998876 4222         2345555555554

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>PRK06245 cofG FO synthase subunit 1; Reviewed

Probab=97.16  E-value=0.057  Score=55.27  Aligned_cols=233  Identities=15%  Similarity=0.082  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CC-----HHHHHHHHHhccCCcee-EEecchhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--AD-----ARDVMEAVRDLEGARLP-VLTPNLKVILQRSILFQ  215 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D-----~e~v~~~i~~~~~~~l~-~l~~~~~~~i~r~~~~~  215 (452)
                      .++.++.++.++.+.+.|+..+-+.+.-.|......  .+     .++..+.++++...... .+.|...          
T Consensus        40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~----------  109 (336)
T PRK06245         40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTN----------  109 (336)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCcccc----------
Confidence            689999999999999999999888765443211000  00     13344555432110000 0111110          


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcCCCEEEEE-ecCChHHHhhh----cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIF-ASASEAFSKSN----INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~-~s~Sd~~~~~~----~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                       +.        ..+.+.++...++|+. +.+. -+.++...+..    .+++.++    ..+.++.|++.|+++...+++
T Consensus       110 -~~--------~lt~e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~----~l~~i~~a~~~Gi~~~~~~i~  175 (336)
T PRK06245        110 -AG--------ILTREEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPEL----RLETIENAGKLKIPFTTGILI  175 (336)
T ss_pred             -CC--------CCCHHHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHH----HHHHHHHHHHcCCceeeeeee
Confidence             00        0123466666676654 3432 23445443211    1333333    356778999999998777764


Q ss_pred             eecCCCCCCCCHHHHHH---HHHHHH-HCC-cCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949          291 VVGCPVEGAIPPSKVAY---VAKELH-DMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLH  355 (452)
Q Consensus       291 ~~g~p~~~r~d~e~l~~---~a~~l~-~~G-ad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~H  355 (452)
                      .+   .+   +.+...+   .++.+. +.| ++.|.+      ..|    ....++.+..++++..+..+|. .+.+-.-
T Consensus       176 G~---gE---t~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~  248 (336)
T PRK06245        176 GI---GE---TWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVP  248 (336)
T ss_pred             EC---CC---CHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecC
Confidence            32   22   2344444   333332 232 444331      122    2245678888888888888864 2332221


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      -.+|.  .-...++.+||+-+++|+...|+ -..+... ..++|+++.+++..|..
T Consensus       249 ~~~~~--~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~  300 (336)
T PRK06245        249 PNLNR--DTGLLLLDAGADDLGGISPVTKD-YVNPEYP-WPDIEELREILEEAGWP  300 (336)
T ss_pred             Cccch--HHHHHHHhcCCccccCCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence            24444  33456799999999988886555 1111112 25789999999987764

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.14  E-value=0.06  Score=51.79  Aligned_cols=153  Identities=25%  Similarity=0.330  Sum_probs=104.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.|++.||+++-. |       +..+.++.+++ .+++.+.+-+  .                   
T Consensus        17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGT--V-------------------   67 (204)
T TIGR01182        17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGT--V-------------------   67 (204)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEe--C-------------------
Confidence            478999999999999999999999732 2       33455565653 3443333321  0                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|.+.+.     |+.+               -.+++++|++.|+.+.         |  +-.+|.
T Consensus        68 ----l~~~~a~~a~~aGA~Fiv-----sP~~---------------~~~v~~~~~~~~i~~i---------P--G~~Tpt  112 (204)
T TIGR01182        68 ----LNPEQLRQAVDAGAQFIV-----SPGL---------------TPELAKHAQDHGIPII---------P--GVATPS  112 (204)
T ss_pred             ----CCHHHHHHHHHcCCCEEE-----CCCC---------------CHHHHHHHHHcCCcEE---------C--CCCCHH
Confidence                134689999999999872     2211               0377899999998764         1  334555


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHH-H--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ++.    .+.++|++.|-+       .|.. +  ..+++.++.-+|.+++-    -+=|....|.-.=+.+|+..+
T Consensus       113 Ei~----~A~~~Ga~~vKl-------FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v  173 (204)
T TIGR01182       113 EIM----LALELGITALKL-------FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC  173 (204)
T ss_pred             HHH----HHHHCCCCEEEE-------CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence            444    457789998887       4433 2  36788888888875543    466778899999999998744

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=97.13  E-value=0.063  Score=54.72  Aligned_cols=195  Identities=18%  Similarity=0.158  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.+....+++.-.+.+.+.|--.+...-++.+    .+.+...++.. .... +++.+.- .        ++      
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHL-D--------Hg------   84 (307)
T PRK05835         24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMG----IDMAVGMVKIMCERYPHIPVALHL-D--------HG------   84 (307)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCC----hHHHHHHHHHHHHhcCCCeEEEEC-C--------CC------
Confidence            4788999999999999999988776554333222    22333333322 2222 3332210 0        01      


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----  297 (452)
                            ...+.+.+|+++|.+-|.+=.|.          .+.+|.++.-++++++|+..|+.|++.|-..-|.++.    
T Consensus        85 ------~~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~  148 (307)
T PRK05835         85 ------TTFESCEKAVKAGFTSVMIDASH----------HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVD  148 (307)
T ss_pred             ------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccc
Confidence                  12358899999999998875442          2457899999999999999999999888876444443    


Q ss_pred             ----CCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCC----------
Q 012949          298 ----GAIPPSKVAYVAKELHDMGCFEISL--GDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDT----------  357 (452)
Q Consensus       298 ----~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd----------  357 (452)
                          ..++|+...++++   +.|+|.+.+  .-+=|.-    .|.-=.++++.+++.++ +||.+|.=..          
T Consensus       149 ~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPLVLHGgSGip~e~~~~~~  224 (307)
T PRK05835        149 EKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPLVLHGASAIPDDVRKSYL  224 (307)
T ss_pred             cccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCEEEeCCCCCchHHhhhhh
Confidence                1456777666664   458885444  3333443    24555677888888874 5898887554          


Q ss_pred             ---------cCcHHHHHHHHHHcCCCEEe
Q 012949          358 ---------YGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       358 ---------~GlA~ANaLaAl~aGa~~VD  377 (452)
                               +|..+-....|+..|+.-|+
T Consensus       225 ~~g~~~~~~~g~~~e~~~kai~~GI~KiN  253 (307)
T PRK05835        225 DAGGDLKGSKGVPFEFLQESVKGGINKVN  253 (307)
T ss_pred             hhccccccccCCCHHHHHHHHHcCceEEE
Confidence                     33445578888888887654

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=97.12  E-value=0.06  Score=55.68  Aligned_cols=212  Identities=16%  Similarity=0.158  Sum_probs=134.2

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRS  211 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~  211 (452)
                      ++.+..+.  .++.+....++++-.+.+-+.|--.++..-++.+    .+.+...++.. .... +++.+. +.      
T Consensus        13 ~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValH-LD------   81 (347)
T TIGR01521        13 EFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMH-QD------   81 (347)
T ss_pred             HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEE-CC------
Confidence            33444443  4889999999999999999988776654333222    22333333322 1221 232221 00      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                        ++            ...+.+.+|+++|..-|.+=.|.-+   ..+...+.+|.++.-++++++|+..|+.|.+.|-..
T Consensus        82 --Hg------------~~~e~i~~Ai~~GFtSVMiDgS~l~---~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~i  144 (347)
T TIGR01521        82 --HG------------NSPATCQRAIQLGFTSVMMDGSLRE---DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCL  144 (347)
T ss_pred             --CC------------CCHHHHHHHHHcCCCEEeecCcCCc---ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence              11            0235888999999998887544211   123345779999999999999999999999888875


Q ss_pred             ecCC-------CC-----------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCc----HH---HHHHHHHHHHHh
Q 012949          292 VGCP-------VE-----------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGT----PG---TVVPMLEAVMAV  344 (452)
Q Consensus       292 ~g~p-------~~-----------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~----P~---~v~~li~~l~~~  344 (452)
                      -|.+       +.           ..++|+...++++.   .|+|.+.++  -.=|.-.    |.   -=.++++.+++.
T Consensus       145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~  221 (347)
T TIGR01521       145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKK---TKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHAR  221 (347)
T ss_pred             ccccccccccccCcccccccchhhcCCCHHHHHHHHHH---HCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHcc
Confidence            4333       21           14577776666654   478854443  2334432    42   224567888888


Q ss_pred             CCCccEEEEeCCC-------------------cCcHHHHHHHHHHcCCCEEee
Q 012949          345 VPVEKLAVHLHDT-------------------YGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       345 ~p~~~l~vH~Hnd-------------------~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ++++||.+|.=..                   +|.--.....|++.|+.-|+.
T Consensus       222 v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi  274 (347)
T TIGR01521       222 LPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNI  274 (347)
T ss_pred             CCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEe
Confidence            8667899988664                   345578899999999987654

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=97.12  E-value=0.055  Score=55.99  Aligned_cols=212  Identities=16%  Similarity=0.192  Sum_probs=134.7

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCC-ceeEEecchhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGA-RLPVLTPNLKVILQRS  211 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~-~l~~l~~~~~~~i~r~  211 (452)
                      ++.+..+.  .++.+....+++.-.+.+.+.|--.++..-++.+    .+.+...++.. ... .+++.+. +.      
T Consensus        15 ~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLH-LD------   83 (347)
T PRK13399         15 ENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLH-QD------   83 (347)
T ss_pred             HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEE-CC------
Confidence            34444443  4889999999999999999988776654333332    22233333322 122 1333221 00      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                        +  +          ...+.+.+|+++|..-|.+=.|.-+   .-+...+.++.++.-++++++|+..|+.|.+.|-..
T Consensus        84 --H--g----------~~~e~i~~Ai~~GFtSVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~i  146 (347)
T PRK13399         84 --H--G----------NSPATCQSAIRSGFTSVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCL  146 (347)
T ss_pred             --C--C----------CCHHHHHHHHhcCCCEEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence              0  1          0235788999999998887544211   011233578999999999999999999999888754


Q ss_pred             ecCC-------C-----------CCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC----cHH---HHHHHHHHHHHh
Q 012949          292 VGCP-------V-----------EGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPG---TVVPMLEAVMAV  344 (452)
Q Consensus       292 ~g~p-------~-----------~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~----~P~---~v~~li~~l~~~  344 (452)
                      -|.+       +           ...++|+...+++++   .|+|.+.++  -.=|.-    .|.   -=.++++.+++.
T Consensus       147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~  223 (347)
T PRK13399        147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR---TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHAR  223 (347)
T ss_pred             cCcccccccccCCccccccccccccCCCHHHHHHHHHH---HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhh
Confidence            3222       2           124677777766654   488854443  233333    132   235678889998


Q ss_pred             CCCccEEEEeCCC-------------------cCcHHHHHHHHHHcCCCEEee
Q 012949          345 VPVEKLAVHLHDT-------------------YGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       345 ~p~~~l~vH~Hnd-------------------~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ++++||.+|.=..                   +|....+...|+..|+.-|+.
T Consensus       224 v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi  276 (347)
T PRK13399        224 LPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNI  276 (347)
T ss_pred             cCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEe
Confidence            8667999998664                   456788999999999987654

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit

Probab=97.10  E-value=0.061  Score=54.98  Aligned_cols=228  Identities=14%  Similarity=0.097  Sum_probs=126.3

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccc--------------ccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVP--------------QLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p--------------~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      ..++.++.++.++.+.+.|+..+-+.+...|....              ......++++.+++..+. ++.+.++.    
T Consensus        33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~----  107 (322)
T TIGR03550        33 ALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGV----  107 (322)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCC----
Confidence            35899999999999999999998887666554110              000011222222211121 11111111    


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHh---hhc--CCCHHHHHHHHHHHHHHHHhCCC
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSK---SNI--NCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~---~~~--~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                                         .+.+.++..+++|++ +++..-. ++...+   ...  +++.+    .-.+.++.|++.|+
T Consensus       108 -------------------lt~e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~----~~l~~i~~a~~~Gi  163 (322)
T TIGR03550       108 -------------------MSRDELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPA----VRLETIEDAGRLKI  163 (322)
T ss_pred             -------------------CCHHHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHH----HHHHHHHHHHHcCC
Confidence                               123577888888875 3443222 121110   011  22333    23578899999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-----cCEEEE------cCCc----CCCcHHHHHHHHHHHHHhCCC
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-----CFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-----ad~I~L------~DT~----G~~~P~~v~~li~~l~~~~p~  347 (452)
                      ++...++  +|. .+   +++...+.+..+.+..     ++.+.+      +.|-    ...++.+...+++..|=.+|.
T Consensus       164 ~~~s~~i--~G~-gE---t~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~  237 (322)
T TIGR03550       164 PFTTGIL--IGI-GE---TREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP  237 (322)
T ss_pred             Cccceee--EeC-CC---CHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC
Confidence            9987777  442 23   3566666555554443     433221      2342    245677888888777766753


Q ss_pred             -ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHcCCCCC
Q 012949          348 -EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSGLGVET  412 (452)
Q Consensus       348 -~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~~Gi~t  412 (452)
                       ..|-.-.  .+|  ......|+.+||+-+++|+.=.|+   +....|. .+.++++.+++..|..+
T Consensus       238 ~~~I~~~~--~l~--~~~~~~~L~~Gand~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~p  297 (322)
T TIGR03550       238 DISIQVPP--NLN--REDYRLLLDAGIDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFTL  297 (322)
T ss_pred             CCeeecCC--ccC--hHHHHHHHhcCCccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCCc
Confidence             2232222  333  214678999999999999641122   0001232 47899999999888754

This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.

>PRK08185 hypothetical protein; Provisional

Probab=97.09  E-value=0.1  Score=52.72  Aligned_cols=200  Identities=15%  Similarity=0.167  Sum_probs=128.1

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ++.+..+.  .++.+....+++.-.+.+.+.|--.++..-++.+     .++...++.+ ....+++.+.. .       
T Consensus        10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~-----~~~~~~~~~~a~~~~vPV~lHL-D-------   76 (283)
T PRK08185         10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG-----DNFFAYVRERAKRSPVPFVIHL-D-------   76 (283)
T ss_pred             HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc-----HHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence            44454443  4889999999999999999988876654333222     1244444432 23333432211 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                         .+.          ..+.++.|++.|.+-|.+=.|  +        .+.++.++..++++++|+..|+.|.+.|-. +
T Consensus        77 ---Hg~----------~~e~i~~ai~~Gf~SVM~D~S--~--------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-v  132 (283)
T PRK08185         77 ---HGA----------TIEDVMRAIRCGFTSVMIDGS--L--------LPYEENVALTKEVVELAHKVGVSVEGELGT-I  132 (283)
T ss_pred             ---CCC----------CHHHHHHHHHcCCCEEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEEee-c
Confidence               110          235889999999998776443  2        356899999999999999999999888866 4


Q ss_pred             cCCCCC---------CCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCC-----cHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          293 GCPVEG---------AIPPSKVAYVAKELHDMGCFEISLG-DTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       293 g~p~~~---------r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~-----~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      |....+         .++|+...++.+   +.|+|.+.++ -|++..     .|.--.++++.+++.++ +||.+|+-..
T Consensus       133 g~~e~~~~~~~~~~~~t~peea~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg  208 (283)
T PRK08185        133 GNTGTSIEGGVSEIIYTDPEQAEDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSA  208 (283)
T ss_pred             cCcccccccccccccCCCHHHHHHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCC
Confidence            432111         346665554443   3388877761 222222     24334677888888765 5788877655


Q ss_pred             cCcHHHHHHHHHHcCCCEEee
Q 012949          358 YGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .  .-.....|+..|+.-|+.
T Consensus       209 ~--~~e~~~~ai~~GI~KiNi  227 (283)
T PRK08185        209 N--PDAEIAESVQLGVGKINI  227 (283)
T ss_pred             C--CHHHHHHHHHCCCeEEEe
Confidence            4  577889999999886643

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=97.07  E-value=0.1  Score=52.72  Aligned_cols=194  Identities=20%  Similarity=0.217  Sum_probs=127.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc--eeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR--LPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~--l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+....+++.-.+.+-+.|--.++..-++.   ...+.+...++.. ...+  +++.+. +.          .+   
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lH-LD----------Hg---   87 (285)
T PRK07709         25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIH-LD----------HG---   87 (285)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEE-CC----------CC---
Confidence            478899999999999999998877655432321   1223333334322 1221  233221 00          01   


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+.+|+++|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|++.|-..-|.++.   
T Consensus        88 -------~~~e~i~~ai~~GftSVM~DgS~----------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~  150 (285)
T PRK07709         88 -------SSFEKCKEAIDAGFTSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIA  150 (285)
T ss_pred             -------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCccc
Confidence                   02358889999999988875443          2468999999999999999999999988886454442   


Q ss_pred             -C--CCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          298 -G--AIPPSKVAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       298 -~--r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                       .  .++|+...+++++.   |+|.+.+  .-.=|.-  .|.-=.++++.+++.++ +||.+|+  ..|+.-.....|+.
T Consensus       151 ~~~~yT~peeA~~Fv~~T---gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~  224 (285)
T PRK07709        151 EGVIYADPAECKHLVEAT---GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAIS  224 (285)
T ss_pred             ccccCCCHHHHHHHHHHh---CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHH
Confidence             1  46888777776544   8885554  2222221  34444567788888774 5787765  57888889999999


Q ss_pred             cCCCEEe
Q 012949          371 MGISTVD  377 (452)
Q Consensus       371 aGa~~VD  377 (452)
                      .|+.-|+
T Consensus       225 ~Gi~KiN  231 (285)
T PRK07709        225 LGTSKIN  231 (285)
T ss_pred             cCCeEEE
Confidence            9987554

>PRK06801 hypothetical protein; Provisional

Probab=97.07  E-value=0.086  Score=53.27  Aligned_cols=200  Identities=17%  Similarity=0.171  Sum_probs=127.8

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ++.+..+.  ..+.+....+++.-.+.+.+.|--.++..-++.    ..+.+...++.. ....+++.+.. .       
T Consensus        15 ~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~----~~~~~~~~~~~~a~~~~vpV~lHl-D-------   82 (286)
T PRK06801         15 KHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHFKYI----SLESLVEAVKFEAARHDIPVVLNL-D-------   82 (286)
T ss_pred             HCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence            34444443  478999999999999999998776554322221    233344444432 23333432211 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                       +  +.          ..+.++.|++.|++.|.+=.|.          .+.++.++..++++++|+..|+.|.+.+-.. 
T Consensus        83 -H--~~----------~~e~i~~Ai~~GftSVm~D~S~----------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~v-  138 (286)
T PRK06801         83 -H--GL----------HFEAVVRALRLGFSSVMFDGST----------LEYEENVRQTREVVKMCHAVGVSVEAELGAV-  138 (286)
T ss_pred             -C--CC----------CHHHHHHHHHhCCcEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEeecCcc-
Confidence             1  10          2358899999999999884332          2457889999999999999999998777663 


Q ss_pred             cCCCCC----------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC------cHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          293 GCPVEG----------AIPPSKVAYVAKELHDMGCFEISLGDTIGVG------TPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       293 g~p~~~----------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~------~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      |..+.+          .++|+...++++   +.|+|.+.+  ++|..      .|.-=.++++.+++.++ +||.+|+= 
T Consensus       139 gg~e~~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHGG-  211 (286)
T PRK06801        139 GGDEGGALYGEADSAKFTDPQLARDFVD---RTGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHGG-  211 (286)
T ss_pred             cCCCCCcccCCcccccCCCHHHHHHHHH---HHCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEECC-
Confidence            332211          345565555554   469998887  33221      22223445677777665 47877764 


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeec
Q 012949          357 TYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                       -|....+...++.+|++-|+..
T Consensus       212 -Sgi~~e~~~~~i~~Gi~KINv~  233 (286)
T PRK06801        212 -SGISDADFRRAIELGIHKINFY  233 (286)
T ss_pred             -CCCCHHHHHHHHHcCCcEEEeh
Confidence             4777899999999999977653

>PRK08508 biotin synthase; Provisional

Probab=97.05  E-value=0.22  Score=49.94  Aligned_cols=221  Identities=13%  Similarity=0.036  Sum_probs=131.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEe-cCCC-CCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccch
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEAT-SFVS-PKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG-~~~s-~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ++.++.++.++...+.|+..+-+. +.-. ++     .+.+.+.+.++.+..  ..+.+++..-.               
T Consensus        40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~-----~~~e~~~ei~~~ik~~~p~l~i~~s~G~---------------   99 (279)
T PRK08508         40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDD-----KKLEYVAEAAKAVKKEVPGLHLIACNGT---------------   99 (279)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCc-----ccHHHHHHHHHHHHhhCCCcEEEecCCC---------------
Confidence            699999999999999999888662 2111 11     134555555554321  12222211110               


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~-~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                             ...+.+++.+++|++.+.+-.-.++.+..... +.+.++.+    +.++.|++.|+++...+.  +|- -+  
T Consensus       100 -------~~~e~l~~Lk~aGld~~~~~lEt~~~~~~~i~~~~~~~~~l----~~i~~a~~~Gi~v~sg~I--~Gl-GE--  163 (279)
T PRK08508        100 -------ASVEQLKELKKAGIFSYNHNLETSKEFFPKICTTHTWEERF----QTCENAKEAGLGLCSGGI--FGL-GE--  163 (279)
T ss_pred             -------CCHHHHHHHHHcCCCEEcccccchHHHhcCCCCCCCHHHHH----HHHHHHHHcCCeecceeE--Eec-CC--
Confidence                   13458888999999999987666654333222 34444444    556888999999887666  442 12  


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE------cCCc---CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL------GDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L------~DT~---G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                       +++++.+.+..+.+.+.+.|-+      ++|-   ...+|.++..+++..|-.+|...|-+-+=-. .+--..-..++.
T Consensus       164 -t~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~-~~~~~~~~~~~~  241 (279)
T PRK08508        164 -SWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGRE-VVFGERQYEIFE  241 (279)
T ss_pred             -CHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChh-hhchhhHHHHHh
Confidence             4788999999999999874432      2221   2367888888888888778875554433100 000113456888


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      +||+.+  -++++=       -+...+.++-+.+++.+|+..
T Consensus       242 ~g~n~~--~~g~~l-------t~~g~~~~~d~~~~~~~~~~~  274 (279)
T PRK08508        242 AGANAI--VIGDYL-------TTKGEAPKKDIEKLKSLGFEI  274 (279)
T ss_pred             cCCcce--eecCcc-------cCCCCChHHHHHHHHHcCCCc
Confidence            998752  122221       233355566666888888753

>PRK01060 endonuclease IV; Provisional

Probab=97.04  E-value=0.17  Score=49.98  Aligned_cols=222  Identities=17%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCC-cccccCCHHHHHHHHHh-c--cCCc---eeEEecchhhhhhhhhhhhhccchhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPK-WVPQLADARDVMEAVRD-L--EGAR---LPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~-~~p~~~D~e~v~~~i~~-~--~~~~---l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.++.+.++|++.||+... +|. |.+...+.+ .++.+++ +  .+++   +++..|-.-.       +.....+..
T Consensus        14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~~~-~~~~lk~~~~~~gl~~~~~~~h~~~~~n-------l~~~d~~~r   84 (281)
T PRK01060         14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLEEL-NIEAFKAACEKYGISPEDILVHAPYLIN-------LGNPNKEIL   84 (281)
T ss_pred             HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCCHH-HHHHHHHHHHHcCCCCCceEEecceEec-------CCCCCHHHH
Confidence            457889999999999999532 222 222112322 2333432 1  2444   3332221000       000000111


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH--HhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA--KVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A--k~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                      +.......+.++.|.+.|++.|.+......      .....+++++.+.+.++.+  ...|  |...|....+....--.
T Consensus        85 ~~s~~~~~~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~  156 (281)
T PRK01060         85 EKSRDFLIQEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGR  156 (281)
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccC
Confidence            111111234778888999998887644210      0112335777777776654  3345  44445432111101113


Q ss_pred             CHHHHHHHHHHHHHCCc-CEEEEcCCcCCC----cH-HHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          301 PPSKVAYVAKELHDMGC-FEISLGDTIGVG----TP-GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Ga-d~I~L~DT~G~~----~P-~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      +++.+.++++.+.. .. -.+++ ||.=..    .| ....++++.+.+.++ +--..+|.||..+..        ..+.
T Consensus       157 ~~~~~~~l~~~v~~-~~~vg~~l-D~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~  226 (281)
T PRK01060        157 RFEELARIIDGVED-KSRVGVCL-DTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRK  226 (281)
T ss_pred             CHHHHHHHHHhcCC-cccEEEEE-eHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCC
Confidence            56777777765532 11 12333 654211    22 345577777776554 334689999987521        0011


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      +. +.   .+|        .|+.+.+.++..|+..|+
T Consensus       227 d~-H~---~~G--------~G~id~~~~~~~L~~~~y  251 (281)
T PRK01060        227 DR-HA---NLG--------EGTIGFDALRYIVHDPRF  251 (281)
T ss_pred             Cc-cc---CCc--------CCcCCHHHHHHHHhCccc
Confidence            10 11   222        578999999999998655

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=97.03  E-value=0.13  Score=51.64  Aligned_cols=194  Identities=17%  Similarity=0.175  Sum_probs=129.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.+....+++.-.+.+.+.|=-.++..-++.+    .+.+...++.. ...++++.+.. .        +..      
T Consensus        20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~----~~~~~~~~~~~a~~~~VPV~lHL-D--------H~~------   80 (276)
T cd00947          20 INNLETLKAILEAAEETRSPVILQISEGAIKYAG----LELLVAMVKAAAERASVPVALHL-D--------HGS------   80 (276)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C--------CCC------
Confidence            3788899999999999999977665443222222    23333444332 22333432211 0        110      


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-----  297 (452)
                            ..+.+..|+++|..-|.+=.|.          .+.++.++.-++++++|+..|+.|.+.|-..-|.++.     
T Consensus        81 ------~~~~i~~ai~~GftSVMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~  144 (276)
T cd00947          81 ------SFELIKRAIRAGFSSVMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE  144 (276)
T ss_pred             ------CHHHHHHHHHhCCCEEEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence                  2358889999999988875443          2468899999999999999999999888876454433     


Q ss_pred             -CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          298 -GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       298 -~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                       ..++|+...+++++   .|+|.+.++  -.=|.-   .|.-=.++++.+++.++ +||.+|+  .-|+.--....|++.
T Consensus       145 ~~~T~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~~  218 (276)
T cd00947         145 GLLTDPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHG--GSGIPDEQIRKAIKL  218 (276)
T ss_pred             ccCCCHHHHHHHHHH---HCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHc
Confidence             14678877777765   488855543  232332   55556678888888875 5787765  558888889999999


Q ss_pred             CCCEEee
Q 012949          372 GISTVDC  378 (452)
Q Consensus       372 Ga~~VD~  378 (452)
                      |+.-|+.
T Consensus       219 Gi~KiNi  225 (276)
T cd00947         219 GVCKINI  225 (276)
T ss_pred             CCeEEEe
Confidence            9986654

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=97.01  E-value=0.05  Score=53.49  Aligned_cols=222  Identities=14%  Similarity=0.091  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      .-.+.++.+.++|++.||+.......+.|.+.  +.+++.+.++. .++++..+.+.....   ...+.......-+...
T Consensus        14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~---~~~~~~~~~~~r~~~~   89 (275)
T PRK09856         14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGY---PYNMMLGDEHMRRESL   89 (275)
T ss_pred             CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCc---CccccCCCHHHHHHHH
Confidence            35667788899999999996321111122221  23333333332 355555544311000   0000000000000000


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSK  304 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~e~  304 (452)
                      ....+.++.|...|++.|.+.......  ........+...+.+.++.++|++.|+.+.  +...  .|..+  ..+++.
T Consensus        90 ~~~~~~i~~a~~lGa~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--iE~~--~~~~~~~~~t~~~  163 (275)
T PRK09856         90 DMIKLAMDMAKEMNAGYTLISAAHAGY--LTPPNVIWGRLAENLSELCEYAENIGMDLI--LEPL--TPYESNVVCNAND  163 (275)
T ss_pred             HHHHHHHHHHHHhCCCEEEEcCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EecC--CCCcccccCCHHH
Confidence            112246788889999999885431100  000011245667778888999999998654  3321  11111  124556


Q ss_pred             HHHHHHHHHHCCc-CEEEEcCCcCC-CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          305 VAYVAKELHDMGC-FEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       305 l~~~a~~l~~~Ga-d~I~L~DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +.++++..   +- ..-.+.|+.=. ....++.+.++.    ++.....+|.+|..+-.               +     
T Consensus       164 ~~~l~~~~---~~~~v~~~~D~~h~~~~~~~~~~~i~~----~~~rI~~vHi~D~~~~~---------------~-----  216 (275)
T PRK09856        164 VLHALALV---PSPRLFSMVDICAPYVQAEPVMSYFDK----LGDKLRHLHIVDSDGAS---------------D-----  216 (275)
T ss_pred             HHHHHHHc---CCCcceeEEeecchhcCCCCHHHHHHH----hCCcEEEEEEEcCCCCC---------------C-----
Confidence            66666543   32 22223477432 122233333333    33334789999987521               1     


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                         +...+| .|+.+..+++..|+..|++
T Consensus       217 ---~~~~pG-~G~id~~~i~~~L~~~gy~  241 (275)
T PRK09856        217 ---THYIPG-EGKMPLRELMRDIIDRGYE  241 (275)
T ss_pred             ---CCcCCC-CCCCCHHHHHHHHHHcCCC
Confidence               112233 5899999999999987765

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.00  E-value=0.1  Score=52.68  Aligned_cols=203  Identities=14%  Similarity=0.113  Sum_probs=133.5

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS  211 (452)
Q Consensus       135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~  211 (452)
                      |++.+..+.  .++.+....+++.-.+.+.+.|=-.++..-++.+    .+.+...++.. ...++++.+.. .      
T Consensus        14 ~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHL-D------   82 (284)
T PRK12737         14 QAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHL-D------   82 (284)
T ss_pred             HHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C------
Confidence            344455443  4788999999999999999988765543322222    23333434332 23334432211 0      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                        +  +.          ..+.+.+|+++|..-|.+=.|.          .+.++.++.-++++++|+..|+.|.+.|-..
T Consensus        83 --H--~~----------~~e~i~~ai~~GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~i  138 (284)
T PRK12737         83 --H--HE----------DLDDIKKKVRAGIRSVMIDGSH----------LSFEENIAIVKEVVEFCHRYDASVEAELGRL  138 (284)
T ss_pred             --C--CC----------CHHHHHHHHHcCCCeEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence              0  10          2358899999999988764432          2568999999999999999999999888876


Q ss_pred             ecCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          292 VGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       292 ~g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                      -|.++.        ..++|+...++++.   .|+|.+.++=  .=|.-  .|.-=.++++.+++.++ +||.+|+  .-|
T Consensus       139 gg~e~~~~~~~~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG  212 (284)
T PRK12737        139 GGQEDDLVVDEKDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASG  212 (284)
T ss_pred             cCccCCcccccccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCC
Confidence            555443        14688877777755   4888655532  22332  34444567888888765 4777665  567


Q ss_pred             cHHHHHHHHHHcCCCEEee
Q 012949          360 QSLPNILISLQMGISTVDC  378 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~  378 (452)
                      +.-.....|++.|+.-|+.
T Consensus       213 ~~~e~~~kai~~Gi~KiNi  231 (284)
T PRK12737        213 VPDEDVKKAISLGICKVNV  231 (284)
T ss_pred             CCHHHHHHHHHCCCeEEEe
Confidence            7788899999999987654

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=96.99  E-value=0.047  Score=54.45  Aligned_cols=162  Identities=19%  Similarity=0.203  Sum_probs=100.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHHhc----cCCceeEEe-cchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVRDL----EGARLPVLT-PNLKV  206 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~~~----~~~~l~~l~-~~~~~  206 (452)
                      -+.+.-+++++.|.+.|+|.||+|+|-| |. -.|..           ...++.++.++.+    .++.+..|+ -|.- 
T Consensus        28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi-  106 (265)
T COG0159          28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPI-  106 (265)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHH-
Confidence            5789999999999999999999998754 32 01111           1224455555543    122232222 1110 


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |..           ...+.++.+.++|++.+-+.+-.                ++...++.+.++++|+....
T Consensus       107 -------~~~-----------Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~  152 (265)
T COG0159         107 -------FNY-----------GIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF  152 (265)
T ss_pred             -------HHh-----------hHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE
Confidence                   111           12246788999999999887532                13334566888899998642


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEE
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~v  352 (452)
                           +..|   .++.+.+.++++...  | +..+...-++|.-.|  ..+.++++.+|+.. +.|+.+
T Consensus       153 -----lvaP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v  210 (265)
T COG0159         153 -----LVAP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV  210 (265)
T ss_pred             -----EeCC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE
Confidence                 1122   234566666665443  3 567888888898888  33899999999876 345554

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=96.99  E-value=0.12  Score=52.06  Aligned_cols=196  Identities=19%  Similarity=0.202  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc-eeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR-LPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~-l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.+....++++..+.+.+.|=..+...-++.+.   .+.+...++.+ .... .++....             .|.  
T Consensus        23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhl-------------DH~--   84 (282)
T TIGR01859        23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHL-------------DHG--   84 (282)
T ss_pred             ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEEC-------------CCC--
Confidence            37889999999999999999888765533232221   22333333332 1222 3332211             010  


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-----
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-----  296 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-----  296 (452)
                            ...+.++.|++.|++.|.+=.+.          .+.++.++..++++++|+..|+.|.+.|-..-|.++     
T Consensus        85 ------~~~e~i~~ai~~Gf~sVmid~s~----------l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~  148 (282)
T TIGR01859        85 ------SSYESCIKAIKAGFSSVMIDGSH----------LPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEK  148 (282)
T ss_pred             ------CCHHHHHHHHHcCCCEEEECCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccc
Confidence                  02347889999999988765432          256788999999999999999988766654222222     


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEc-CC-cCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLG-DT-IGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~-DT-~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                       .+.++++.+.++.+   +.|+|.|.++ -| -|..  .|.-=.++++.+++.++ +||..|  ..-|+-..|...++++
T Consensus       149 ~~~~t~~eea~~f~~---~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~h--GgSGi~~e~i~~~i~~  222 (282)
T TIGR01859       149 EAELADPDEAEQFVK---ETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLH--GASGIPEEQIKKAIKL  222 (282)
T ss_pred             ccccCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEE--CCCCCCHHHHHHHHHc
Confidence             22457776655553   2489987753 11 1111  13223556677777765 466555  5668888999999999


Q ss_pred             CCCEEeec
Q 012949          372 GISTVDCS  379 (452)
Q Consensus       372 Ga~~VD~S  379 (452)
                      |++-|+..
T Consensus       223 Gi~kiNv~  230 (282)
T TIGR01859       223 GIAKINID  230 (282)
T ss_pred             CCCEEEEC
Confidence            99977543

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=96.97  E-value=0.21  Score=47.60  Aligned_cols=187  Identities=22%  Similarity=0.214  Sum_probs=114.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~~  221 (452)
                      ..+.++..++++...+.|++.+.+.    |.+++      ...+.++. .++.+...+  |.-           ..+.+ 
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~------~~~~~l~~-~~~~v~~~~~fp~g-----------~~~~~-   69 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVN----PCFVP------LAREALKG-SGVKVCTVIGFPLG-----------ATTTE-   69 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEc----HHHHH------HHHHHcCC-CCcEEEEEEecCCC-----------CCcHH-
Confidence            4588999999999999999999884    21111      11222222 223333222  211           11111 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                            .....++.|++.|++.|.+.......     .....++.++.+.++++.|.  |+.+.+-+.       .+..+
T Consensus        70 ------~k~~eve~A~~~GAdevdvv~~~g~~-----~~~~~~~~~~ei~~v~~~~~--g~~lkvI~e-------~~~l~  129 (203)
T cd00959          70 ------VKVAEAREAIADGADEIDMVINIGAL-----KSGDYEAVYEEIAAVVEACG--GAPLKVILE-------TGLLT  129 (203)
T ss_pred             ------HHHHHHHHHHHcCCCEEEEeecHHHH-----hCCCHHHHHHHHHHHHHhcC--CCeEEEEEe-------cCCCC
Confidence                  12246889999999999998865432     12234667788888888776  766654222       12346


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          302 PSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ++.+.+.++.+.++|+|.|-..  =+.+..+|+.+..+-+.++..+|. .+.==.+ |    ...++.-+++|++++-+|
T Consensus       130 ~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~v~i-k~aGGik-t----~~~~l~~~~~g~~riG~s  203 (203)
T cd00959         130 DEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGRVGV-KAAGGIR-T----LEDALAMIEAGATRIGTS  203 (203)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceE-EEeCCCC-C----HHHHHHHHHhChhhccCC
Confidence            7899999999999999988876  222345778877776666632321 1211111 3    466677778899887553

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.96  E-value=0.072  Score=51.32  Aligned_cols=180  Identities=14%  Similarity=0.068  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC-CceeEEe-cchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-ARLPVLT-PNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ++..++++.+.++|.|.|++|.-..       -+.+.+.+.++.+.. ..++++. |+--                    
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGGS~g-------vt~~~~~~~v~~ik~~~~lPvilfp~~~--------------------   63 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGGSLG-------IVESNLDQTVKKIKKITNLPVILFPGNV--------------------   63 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcCC-------CCHHHHHHHHHHHHhhcCCCEEEECCCc--------------------
Confidence            5567789999999999999984211       122334333333322 3455544 4321                    


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE--EEEEEeeecCCCC------
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV--RGYVSCVVGCPVE------  297 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V--~~~l~~~~g~p~~------  297 (452)
                               ..+..++|-+-+..=.|        ..+.+..+..-.+++...|+.|.++  ++|+...-++-.+      
T Consensus        64 ---------~~i~~~aD~~~~~slln--------s~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~  126 (205)
T TIGR01769        64 ---------NGLSRYADAVFFMSLLN--------SADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAR  126 (205)
T ss_pred             ---------cccCcCCCEEEEEEeec--------CCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcc
Confidence                     01223566554432111        0122344444334455568888875  5776542221111      


Q ss_pred             --CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCC
Q 012949          298 --GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGIS  374 (452)
Q Consensus       298 --~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~  374 (452)
                        -+.++|....++..+..+|++.|+|.|..|...|-. .++++.+++... .++.+=    .|.-. ..+..++.+|||
T Consensus       127 ~ip~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~vG----GGIrs~e~a~~l~~~GAD  200 (205)
T TIGR01769       127 EIPYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN-PETISLVKKASG-IPLIVG----GGIRSPEIAYEIVLAGAD  200 (205)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhhC-CCEEEe----CCCCCHHHHHHHHHcCCC
Confidence              124778889999999999999999999988854433 667777777652 344331    12222 344455578988


Q ss_pred             EEe
Q 012949          375 TVD  377 (452)
Q Consensus       375 ~VD  377 (452)
                      .|=
T Consensus       201 ~VV  203 (205)
T TIGR01769       201 AIV  203 (205)
T ss_pred             EEE
Confidence            763

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=96.96  E-value=0.13  Score=51.85  Aligned_cols=202  Identities=13%  Similarity=0.112  Sum_probs=132.9

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~  212 (452)
                      .+.+..+.  .++.+....+++.-.+.+.+.|--.++..-++.    ..+.+...++.. ...++++.+.. .       
T Consensus        13 ~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHL-D-------   80 (282)
T TIGR01858        13 AGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHL-D-------   80 (282)
T ss_pred             HcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence            34444443  478899999999999999998877654332222    233344444432 23344443211 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                       +  +          ...+.+.+|+++|..-|.+=.|.-          +.++.++.-++++++|+..|+.|.+.|-..-
T Consensus        81 -H--g----------~~~e~i~~ai~~GFtSVM~DgS~l----------p~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg  137 (282)
T TIGR01858        81 -H--H----------ESLDDIRQKVHAGVRSAMIDGSHF----------PFAQNVKLVKEVVDFCHRQDCSVEAELGRLG  137 (282)
T ss_pred             -C--C----------CCHHHHHHHHHcCCCEEeecCCCC----------CHHHHHHHHHHHHHHHHHcCCeEEEEEEecC
Confidence             0  1          023588999999999888754432          4688999999999999999999998888764


Q ss_pred             cCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          293 GCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       293 g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      |.++.        ..++|+...++++   +-|+|.+.++  -.=|.-  .|.-=.++++.+++.++ +||.+|+  .-|+
T Consensus       138 g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHG--gSG~  211 (282)
T TIGR01858       138 GVEDDLSVDEEDALYTDPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHG--ASDV  211 (282)
T ss_pred             CccCCCccccchhccCCHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEec--CCCC
Confidence            54443        1467777776654   5588865543  222221  24445677888888774 5787766  5566


Q ss_pred             HHHHHHHHHHcCCCEEee
Q 012949          361 SLPNILISLQMGISTVDC  378 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~  378 (452)
                      .-.....|+..|+.-|+.
T Consensus       212 ~~e~~~~ai~~Gi~KiNi  229 (282)
T TIGR01858       212 PDEDVRRTIELGICKVNV  229 (282)
T ss_pred             CHHHHHHHHHcCCeEEEe
Confidence            788899999999986643

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=96.95  E-value=0.12  Score=52.24  Aligned_cols=194  Identities=17%  Similarity=0.190  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCc--eeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGAR--LPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~--l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+....+++.-.+.+.+.|--.++..-++.+   ..+.+...++.. ...+  +++.+. +.          .+   
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~vPV~lH-LD----------Hg---   87 (286)
T PRK08610         25 LNNLEFTQAILEASQEENAPVILGVSEGAARYMS---GFYTVVKMVEGLMHDLNITIPVAIH-LD----------HG---   87 (286)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCCEEEE-CC----------CC---
Confidence            4788999999999999999988766543222211   122333333321 1222  233221 00          01   


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+.+|+++|..-|.+=.|.          .+.++.++.-++++++|+..|+.|++.|-..-|.++.   
T Consensus        88 -------~~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~  150 (286)
T PRK08610         88 -------SSFEKCKEAIDAGFTSVMIDASH----------SPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVA  150 (286)
T ss_pred             -------CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCC
Confidence                   12358889999999988875443          2468899999999999999999999988876444442   


Q ss_pred             C---CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          298 G---AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       298 ~---r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                      .   .++|+...++++   +-|+|.+.++  -.=|.-  .|.-=.++++.+++.++ +||.+|+  .-|..-.....|+.
T Consensus       151 ~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~  224 (286)
T PRK08610        151 DGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIP  224 (286)
T ss_pred             cccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHH
Confidence            1   368887777775   4588855443  222222  24333567777777774 5787765  57888889999999


Q ss_pred             cCCCEEe
Q 012949          371 MGISTVD  377 (452)
Q Consensus       371 aGa~~VD  377 (452)
                      .|+.-|+
T Consensus       225 ~GI~KiN  231 (286)
T PRK08610        225 FGTAKIN  231 (286)
T ss_pred             CCCeEEE
Confidence            9987554

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.95  E-value=0.052  Score=54.57  Aligned_cols=220  Identities=15%  Similarity=0.117  Sum_probs=138.4

Q ss_pred             HHHHHHHCCCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          153 LIRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      -+..+.++|++.+=.++..  .....|-  ....+++++.++++.. +.+++++..-       .||+. +.++++    
T Consensus        30 sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~d-------tGfG~-~~nvar----   97 (289)
T COG2513          30 SALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDID-------TGFGE-ALNVAR----   97 (289)
T ss_pred             HHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEecc-------CCCCc-HHHHHH----
Confidence            3677889999999987531  1111222  2345788888887754 4566665322       46777 666655    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          .+..+.++|+.-|+|-+.+-+-   |+..+-=.+.+++.++++.+++.+++..+-+.+ =..+++.   +  -.+.
T Consensus        98 ----tV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~  167 (289)
T COG2513          98 ----TVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDD  167 (289)
T ss_pred             ----HHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHH
Confidence                7888999999999999877652   211222246888888887777766664433221 0001110   1  1345


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      ..+=++...++|||.|...   |.-++++++.+.+.++  +|. ++-+=-+--..+-..--|+  ++|+++|-..+..+ 
T Consensus       168 AI~Ra~AY~eAGAD~if~~---al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~~~~~L~--~~Gv~~V~~~~~~~-  238 (289)
T COG2513         168 AIERAQAYVEAGADAIFPE---ALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLLTVAELA--ELGVKRVSYGLTAF-  238 (289)
T ss_pred             HHHHHHHHHHcCCcEEccc---cCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCcCHHHHH--hcCceEEEECcHHH-
Confidence            5556677789999999875   4566888887777766  443 2333222222333333332  58999998777765 


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          385 GCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                             |+.+.+++.++..+.+.|-
T Consensus       239 -------raa~~a~~~~~~~i~~~gt  257 (289)
T COG2513         239 -------RAALKAAEQAAREIRREGT  257 (289)
T ss_pred             -------HHHHHHHHHHHHHHHhcCc
Confidence                   7889999999998887664

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=96.94  E-value=0.12  Score=50.24  Aligned_cols=190  Identities=16%  Similarity=0.133  Sum_probs=112.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ...+.++..++++...+.|+..+.+-    |.|+|      ...+.++. .++++...+ +.      .+|.....    
T Consensus        17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVi-gF------P~G~~~~~----   74 (221)
T PRK00507         17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLKG-SDVKVCTVI-GF------PLGANTTA----   74 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhCC-CCCeEEEEe-cc------cCCCChHH----
Confidence            35789999999999999999998883    22222      12223321 245554433 11      01111110    


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                           ......+.|++.|+++|.+.+..+-...     -..++..+.+..+.+.+  .+..+-+-|.       ....+.
T Consensus        75 -----~K~~e~~~Ai~~GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~  135 (221)
T PRK00507         75 -----VKAFEAKDAIANGADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTD  135 (221)
T ss_pred             -----HHHHHHHHHHHcCCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCH
Confidence                 1234778899999999999987665311     12455566555555543  3444432222       234567


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      +.+.++++.+.++|+|.|.-.-+.  |..+|+.++.+.+.+...     +.+..----- -...++.-+++||++|-+|
T Consensus       136 e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~-----~~IKasGGIr-t~~~a~~~i~aGA~riGtS  208 (221)
T PRK00507        136 EEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPR-----VGVKASGGIR-TLEDALAMIEAGATRLGTS  208 (221)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC-----ceEEeeCCcC-CHHHHHHHHHcCcceEccC
Confidence            788999999999999955554443  345677766665554332     3333322111 1466777889999998776

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.93  E-value=0.1  Score=50.53  Aligned_cols=152  Identities=26%  Similarity=0.265  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.|++.||+++ .+|       +..+.++.+++ .++..+.+-+   .                  
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~-------~~~~~I~~l~~~~p~~~IGAGT---V------------------   74 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVTL-RTP-------AALEAIRLIAKEVPEALIGAGT---V------------------   74 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEec-CCc-------cHHHHHHHHHHHCCCCEEEEee---c------------------
Confidence            5889999999999999999999995 333       23445555553 3443333211   1                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|.+.+..... +                   .+++++|++.|+...         |  +-.+|.
T Consensus        75 ----l~~~~a~~a~~aGA~FivsP~~-~-------------------~~vi~~a~~~~i~~i---------P--G~~Tpt  119 (212)
T PRK05718         75 ----LNPEQLAQAIEAGAQFIVSPGL-T-------------------PPLLKAAQEGPIPLI---------P--GVSTPS  119 (212)
T ss_pred             ----cCHHHHHHHHHcCCCEEECCCC-C-------------------HHHHHHHHHcCCCEe---------C--CCCCHH
Confidence                1235899999999997764421 1                   266788999998754         1  233455


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +    +..+.++|++.|.+-+..=..-    ...++.++.-+|.++|-    =+=|....|.-.=+.+|
T Consensus       120 E----i~~a~~~Ga~~vKlFPa~~~gg----~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag  176 (212)
T PRK05718        120 E----LMLGMELGLRTFKFFPAEASGG----VKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP  176 (212)
T ss_pred             H----HHHHHHCCCCEEEEccchhccC----HHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence            4    4457889999999954210111    35677778778875554    35677778888888899

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.91  E-value=0.11  Score=52.47  Aligned_cols=202  Identities=13%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ++.+..+.  .++.+....+++.-.+.+.+.|--.++..-++.    ..+.+...++.. ...++++.+.. .       
T Consensus        15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHL-D-------   82 (284)
T PRK09195         15 RGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHL-D-------   82 (284)
T ss_pred             HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence            34444443  478899999999999999998776554322222    223333444432 23344443211 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                       ++.            ..+.+++|+++|..-|.+=.|.          .+.++.++.-++++++|+..|+.|.+.|-..-
T Consensus        83 -Hg~------------~~e~i~~Ai~~GftSVM~DgS~----------l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vg  139 (284)
T PRK09195         83 -HHE------------KFDDIAQKVRSGVRSVMIDGSH----------LPFAQNISLVKEVVDFCHRFDVSVEAELGRLG  139 (284)
T ss_pred             -CCC------------CHHHHHHHHHcCCCEEEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccc
Confidence             110            2358899999999988864442          34688999999999999999999998888764


Q ss_pred             cCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          293 GCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       293 g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      |.++.        ..++|+...++++   +.|+|.+.++  -.=|.-  .|.-=.++++.+++.++ +||.+|+=  -|.
T Consensus       140 g~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGg--SG~  213 (284)
T PRK09195        140 GQEDDLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGA--SGL  213 (284)
T ss_pred             CcccCcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecC--CCC
Confidence            44443        1467877777765   4588855543  233332  34444667888888775 57877764  477


Q ss_pred             HHHHHHHHHHcCCCEEee
Q 012949          361 SLPNILISLQMGISTVDC  378 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~  378 (452)
                      .-.....|+..|+.-|+.
T Consensus       214 ~~e~~~~ai~~Gi~KiNi  231 (284)
T PRK09195        214 PTKDIQQTIKLGICKVNV  231 (284)
T ss_pred             CHHHHHHHHHcCCeEEEe
Confidence            788999999999886653

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.90  E-value=0.031  Score=54.13  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ..++.|++.|++.|.+.....+.        +.++.++.+.++.+.|++.|+++.+... ..|.......+++.+...++
T Consensus        80 ~~v~~a~~~Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~-~~g~~~~~~~~~~~i~~~~~  150 (235)
T cd00958          80 ASVEDAVRLGADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMY-PRGPAVKNEKDPDLIAYAAR  150 (235)
T ss_pred             cCHHHHHHCCCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCCcccCccCHHHHHHHHH
Confidence            36889999999988655433221        2457788899999999999999865432 12221112234567777788


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC---CCcCcHHHHHHHHHHcCCCEEeec
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H---nd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+.++|+|.|.+.=|.   .++.    ++.+.+..|. |+-+=..   .|..-++.|+-.++++||+.|-..
T Consensus       151 ~a~~~GaD~Ik~~~~~---~~~~----~~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg  214 (235)
T cd00958         151 IGAELGADIVKTKYTG---DAES----FKEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG  214 (235)
T ss_pred             HHHHHCCCEEEecCCC---CHHH----HHHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            8999999999995332   2344    3444444442 3433232   455557899999999999977443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=96.90  E-value=0.083  Score=54.35  Aligned_cols=141  Identities=16%  Similarity=0.206  Sum_probs=93.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++.+.+.|+..|.++. .-    |-+ .|..++++.+++. +..+...+.+..                 
T Consensus        36 ~l~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~ii~~~~~~-g~~~~l~TNG~l-----------------   92 (358)
T TIGR02109        36 ELTTEEWTDVLTQAAELGVLQLHFSG-GE----PLARPDLVELVAHARRL-GLYTNLITSGVG-----------------   92 (358)
T ss_pred             CCCHHHHHHHHHHHHhcCCcEEEEeC-cc----ccccccHHHHHHHHHHc-CCeEEEEeCCcc-----------------
Confidence            58999999999999999998887753 22    222 2445566666542 333333332221                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                           .+.+.++...+.|++.|.|.+-.. + .|.+  ++. ...+++++.+.++.+++.|+.+.++.  ++     ++.
T Consensus        93 -----l~~e~~~~L~~~g~~~v~iSldg~~~e~~d~--~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~--vv-----~~~  157 (358)
T TIGR02109        93 -----LTEARLDALADAGLDHVQLSFQGVDEALADR--IAG-YKNAFEQKLAMARAVKAAGLPLTLNF--VI-----HRH  157 (358)
T ss_pred             -----CCHHHHHHHHhCCCCEEEEeCcCCCHHHHHH--hcC-CccHHHHHHHHHHHHHhCCCceEEEE--Ee-----ccC
Confidence                 123466778889999999876443 2 3332  221 23467777788899999999876433  33     345


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE
Q 012949          301 PPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      +.+++.++++.+.+.|++.+.+
T Consensus       158 N~~~l~~~~~~~~~lg~~~i~~  179 (358)
T TIGR02109       158 NIDQIPEIIELAIELGADRVEL  179 (358)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE
Confidence            6788888999999999998876

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.88  E-value=0.14  Score=51.66  Aligned_cols=194  Identities=19%  Similarity=0.268  Sum_probs=126.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ....+....+++.-.+.+-+.|--.++..-++.    ..+.+...++.. ...++++.+.- .          .+     
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~----g~~~~~~~~~~~A~~~~vPV~lHL-D----------H~-----   84 (283)
T PRK07998         25 TTNLETTISILNAIERSGLPNFIQIAPTNAQLS----GYDYIYEIVKRHADKMDVPVSLHL-D----------HG-----   84 (283)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhC----CHHHHHHHHHHHHHHCCCCEEEEC-c----------CC-----
Confidence            478888899999999999998877654322211    233344444432 22333332210 0          01     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-----  297 (452)
                           ...+.+++|+++|.+-|.+=.|.          .+.++.++.-++++++|+..|+.|++.|-..-|.++.     
T Consensus        85 -----~~~e~i~~Ai~~GftSVM~DgS~----------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~  149 (283)
T PRK07998         85 -----KTFEDVKQAVRAGFTSVMIDGAA----------LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEA  149 (283)
T ss_pred             -----CCHHHHHHHHHcCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccc
Confidence                 12358889999999999884332          3568899999999999999999998888876455432     


Q ss_pred             -CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          298 -GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       298 -~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                       ..++|+...++++   +.|+|.+.++=  .=|.-. |.-=.++++.+++..+ +||.+|+=  -|..-.....|+..|+
T Consensus       150 ~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi  223 (283)
T PRK07998        150 DCKTEPEKVKDFVE---RTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGG--SGIPPEILRSFVNYKV  223 (283)
T ss_pred             cccCCHHHHHHHHH---HhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCC--CCCCHHHHHHHHHcCC
Confidence             1367877766664   44888554432  222211 4333577888888775 57887764  5777788899999998


Q ss_pred             CEEee
Q 012949          374 STVDC  378 (452)
Q Consensus       374 ~~VD~  378 (452)
                      .-|+.
T Consensus       224 ~KiNi  228 (283)
T PRK07998        224 AKVNI  228 (283)
T ss_pred             cEEEE
Confidence            86643

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=96.87  E-value=0.16  Score=52.78  Aligned_cols=142  Identities=16%  Similarity=0.201  Sum_probs=91.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++.+.+.|+..|.++. .-    |-+ .|..++++.+++. +......+-+..                 
T Consensus        45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GE----Pll~~~~~~il~~~~~~-g~~~~i~TNG~l-----------------  101 (378)
T PRK05301         45 ELSTEEWIRVLREARALGALQLHFSG-GE----PLLRKDLEELVAHAREL-GLYTNLITSGVG-----------------  101 (378)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEC-Cc----cCCchhHHHHHHHHHHc-CCcEEEECCCcc-----------------
Confidence            57899999999999999998887753 22    222 2444555555542 333332222211                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                           .+.+.++...+.|++.|.|.+...  +.|.+ .-|..  .+++++.+.++.+++.|++|.+..  ++     ++.
T Consensus       102 -----l~~~~~~~L~~~g~~~v~iSldg~~~e~~d~-irg~~--g~f~~~~~~i~~l~~~g~~v~i~~--vv-----~~~  166 (378)
T PRK05301        102 -----LTEARLAALKDAGLDHIQLSFQDSDPELNDR-LAGTK--GAFAKKLAVARLVKAHGYPLTLNA--VI-----HRH  166 (378)
T ss_pred             -----CCHHHHHHHHHcCCCEEEEEecCCCHHHHHH-HcCCC--chHHHHHHHHHHHHHCCCceEEEE--Ee-----ecC
Confidence                 123466778889999999887543  33322 11211  245666677889999999876433  32     345


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEc
Q 012949          301 PPSKVAYVAKELHDMGCFEISLG  323 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~  323 (452)
                      +.+.+.++++.+.+.|++.+.+.
T Consensus       167 N~~~i~~~~~~~~~lgv~~i~~~  189 (378)
T PRK05301        167 NIDQIPRIIELAVELGADRLELA  189 (378)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEe
Confidence            67888899999999999988774

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.87  E-value=0.17  Score=51.15  Aligned_cols=194  Identities=16%  Similarity=0.190  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.+....+++.-.+.+.+.|--.++..-++.+    .+.+...++.. ...++++.+.. .        +  +     
T Consensus        25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g----~~~~~~~~~~~A~~~~VPValHL-D--------H--~-----   84 (284)
T PRK12857         25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAG----IEYISAMVRTAAEKASVPVALHL-D--------H--G-----   84 (284)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCC----HHHHHHHHHHHHHHCCCCEEEEC-C--------C--C-----
Confidence            4788999999999999999988766553322222    23333333322 23334432211 0        0  1     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---C-
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---G-  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~-  298 (452)
                           ...+.+.+|+++|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-.+-|.++.   . 
T Consensus        85 -----~~~e~i~~ai~~GftSVM~DgS~----------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~  149 (284)
T PRK12857         85 -----TDFEQVMKCIRNGFTSVMIDGSK----------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDE  149 (284)
T ss_pred             -----CCHHHHHHHHHcCCCeEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCccc
Confidence                 02358889999999988875442          2468999999999999999999999888876454442   1 


Q ss_pred             ----CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          299 ----AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       299 ----r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                          .++|+...++++   +.|+|.+.++  -.=|.-  .|.--.++++.+++.++ +||.+|+  .-|+.-.....|++
T Consensus       150 ~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHG--gSG~~~e~~~~ai~  223 (284)
T PRK12857        150 REAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHG--SSGVPDEAIRKAIS  223 (284)
T ss_pred             chhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHH
Confidence                457777776664   3488855543  222322  35555678888888775 5787766  55888889999999


Q ss_pred             cCCCEEee
Q 012949          371 MGISTVDC  378 (452)
Q Consensus       371 aGa~~VD~  378 (452)
                      .|+.-|+.
T Consensus       224 ~Gi~KiNi  231 (284)
T PRK12857        224 LGVRKVNI  231 (284)
T ss_pred             cCCeEEEe
Confidence            99886653

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=96.85  E-value=0.031  Score=56.41  Aligned_cols=193  Identities=21%  Similarity=0.232  Sum_probs=123.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.+....++++-.+.+.+.|--.++..-++.    ..+.+...++.. ....+++.+.. .          .+.    
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHL-D----------H~~----   84 (287)
T PF01116_consen   24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHL-D----------HGK----   84 (287)
T ss_dssp             -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEE-E----------EE-----
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeec-c----------cCC----
Confidence            478899999999999999997766543211111    112333333322 12233432210 0          010    


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG----  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~----  298 (452)
                            ..+.+++|+++|.+-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-..-|.++..    
T Consensus        85 ------~~e~i~~ai~~GftSVM~DgS~----------l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~  148 (287)
T PF01116_consen   85 ------DFEDIKRAIDAGFTSVMIDGSA----------LPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEE  148 (287)
T ss_dssp             ------SHHHHHHHHHHTSSEEEEE-TT----------S-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSST
T ss_pred             ------CHHHHHHHHHhCcccccccCCc----------CCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccc
Confidence                  2358899999999998764442          34688999999999999999999999998875554421    


Q ss_pred             -----CCCHHHHHHHHHHHHHCCcCEEEEcCCcC------CC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949          299 -----AIPPSKVAYVAKELHDMGCFEISLGDTIG------VG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  365 (452)
Q Consensus       299 -----r~d~e~l~~~a~~l~~~Gad~I~L~DT~G------~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa  365 (452)
                           .++|+...+++++   .|+|.+.+  ++|      -.  .|.-=.++++.+++.+|++||.+|  -.-|+.-...
T Consensus       149 ~~~~~~TdP~~a~~Fv~~---TgvD~LAv--aiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlH--GgSG~~~e~~  221 (287)
T PF01116_consen  149 ETESLYTDPEEAKEFVEE---TGVDALAV--AIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLH--GGSGLPDEQI  221 (287)
T ss_dssp             T-TTCSSSHHHHHHHHHH---HTTSEEEE---SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEES--SCTTS-HHHH
T ss_pred             cccccccCHHHHHHHHHH---hCCCEEEE--ecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEE--CCCCCCHHHH
Confidence                 3578777777654   48997555  344      22  555557788999998855577765  4678888899


Q ss_pred             HHHHHcCCCEEee
Q 012949          366 LISLQMGISTVDC  378 (452)
Q Consensus       366 LaAl~aGa~~VD~  378 (452)
                      ..|+..|+.-|+.
T Consensus       222 ~~ai~~Gi~KiNi  234 (287)
T PF01116_consen  222 RKAIKNGISKINI  234 (287)
T ss_dssp             HHHHHTTEEEEEE
T ss_pred             HHHHHcCceEEEE
Confidence            9999999886643

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=96.85  E-value=0.35  Score=45.47  Aligned_cols=175  Identities=18%  Similarity=0.144  Sum_probs=98.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .+.+.-.+.++.+.+.|+++||++.--.+ ++|.+....+.++.+++..+..+.+  ++.+.                  
T Consensus         8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~-~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~------------------   68 (210)
T TIGR01163         8 ADFARLGEEVKAVEEAGADWIHVDVMDGH-FVPNLTFGPPVLEALRKYTDLPIDVHLMVENP------------------   68 (210)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCCC-CCCCcccCHHHHHHHHhcCCCcEEEEeeeCCH------------------
Confidence            45567789999999999999999721100 1122222234555665433333322  22211                  


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                             .+.++.+.++|++.|.+....++                .....++.+|+.|+.+...++     +   .++.
T Consensus        69 -------~~~~~~~~~~gadgv~vh~~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~  117 (210)
T TIGR01163        69 -------DRYIEDFAEAGADIITVHPEASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPL  117 (210)
T ss_pred             -------HHHHHHHHHcCCCEEEEccCCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCH
Confidence                   13678888999999887543222                224556888899988653221     1   1233


Q ss_pred             HHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          303 SKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +.+.++.     .++|.|.+    +-+.|...+....+.++.+++..+    ..++.+    .-|.-..|.-.+++.||+
T Consensus       118 e~~~~~~-----~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v----~GGI~~env~~l~~~gad  188 (210)
T TIGR01163       118 EFLEYVL-----PDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEV----DGGVNDDNARELAEAGAD  188 (210)
T ss_pred             HHHHHHH-----hhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHcCCC
Confidence            3333332     35677665    333443223334455566655432    224444    237778888888999999


Q ss_pred             EEee
Q 012949          375 TVDC  378 (452)
Q Consensus       375 ~VD~  378 (452)
                      .|=+
T Consensus       189 ~iiv  192 (210)
T TIGR01163       189 ILVA  192 (210)
T ss_pred             EEEE
Confidence            6533

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=96.84  E-value=0.2  Score=50.71  Aligned_cols=193  Identities=13%  Similarity=0.146  Sum_probs=127.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.+....+++.-.+.+-+.|--.++..-++.    ..+.+...++.+ ...++++.+.. .        ++       
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHL-D--------Hg-------   84 (286)
T PRK12738         25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHL-D--------HH-------   84 (286)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEEC-C--------CC-------
Confidence            478899999999999999998877554322211    223333344322 22334432211 0        11       


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----C
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----~  298 (452)
                           ...+.+.+|+++|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-..-|.++.    .
T Consensus        85 -----~~~e~i~~ai~~GFtSVM~DgS~----------lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~  149 (286)
T PRK12738         85 -----ESLDDIRRKVHAGVRSAMIDGSH----------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA  149 (286)
T ss_pred             -----CCHHHHHHHHHcCCCeEeecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Confidence                 02358889999999988875443          2468999999999999999999999888876454442    1


Q ss_pred             ----CCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          299 ----AIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       299 ----r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                          .++|+...++++.   .|+|.+.++  -.=|.-  .|.-=.++++.+++.++ +||.+|+  .-|..-.+...|++
T Consensus       150 ~~~~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHG--gSG~~~e~~~kai~  223 (286)
T PRK12738        150 ESAFLTDPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIE  223 (286)
T ss_pred             chhcCCCHHHHHHHHHH---hCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHH
Confidence                4577777766543   488855543  222222  45555778888888874 5787776  45666788999999


Q ss_pred             cCCCEEe
Q 012949          371 MGISTVD  377 (452)
Q Consensus       371 aGa~~VD  377 (452)
                      .|+.-|+
T Consensus       224 ~GI~KiN  230 (286)
T PRK12738        224 LGVTKVN  230 (286)
T ss_pred             cCCeEEE
Confidence            9988664

>PRK05926 hypothetical protein; Provisional

Probab=96.83  E-value=0.16  Score=53.03  Aligned_cols=238  Identities=13%  Similarity=0.081  Sum_probs=131.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      ..++.++.++.++.. +.|+..|-+-....|.. + +....++++.+++ .+++.+.++.+.--.-+.++.+        
T Consensus        97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~-~-~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~--------  165 (370)
T PRK05926         97 WFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC-N-LAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDN--------  165 (370)
T ss_pred             ccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC-C-HHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcC--------
Confidence            458999999999998 79999888865444431 0 1112344445553 3455555544321000000000        


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEE--ecCChHHHh-hh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIF--ASASEAFSK-SN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~--~s~Sd~~~~-~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                           ....+.+++.+++|++.+..-  -..+|...+ .. -+++.++-    .++++.|+++|+++.+.+.+  | +.+
T Consensus       166 -----~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~----l~~i~~a~~~Gi~~~sgmi~--G-~gE  233 (370)
T PRK05926        166 -----LPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGF----LEIHKTAHSLGIPSNATMLC--Y-HRE  233 (370)
T ss_pred             -----CCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCcccCceEE--e-CCC
Confidence                 011246889999999977642  112232221 11 13444433    46779999999999877553  3 223


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEE-----EE-----cCCc--------CCCcHHHHHHHHHHHH---HhCCCccEEEEeCC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEI-----SL-----GDTI--------GVGTPGTVVPMLEAVM---AVVPVEKLAVHLHD  356 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I-----~L-----~DT~--------G~~~P~~v~~li~~l~---~~~p~~~l~vH~Hn  356 (452)
                         ++++.++.+..+.+.+.+.+     ..     .+|-        +..++.....+++..|   .++|.+...+   +
T Consensus       234 ---t~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~  307 (370)
T PRK05926        234 ---TPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---N  307 (370)
T ss_pred             ---CHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---h
Confidence               46788888888887765433     21     2332        1234444444444333   3344444444   3


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  411 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~  411 (452)
                      ..  +..-+..||.+||+-+++|+..=--=+.|+...+ -.+.+++..+.+..|..
T Consensus       308 ~~--G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~~  361 (370)
T PRK05926        308 YL--GIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGRI  361 (370)
T ss_pred             hc--CHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            34  4557788999999999999875221111221222 23567777777766653

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=96.81  E-value=0.2  Score=51.86  Aligned_cols=222  Identities=16%  Similarity=0.091  Sum_probs=125.6

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCC---H------HHHHHHHHhc-cCCceeEEe
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LAD---A------RDVMEAVRDL-EGARLPVLT  201 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D---~------e~v~~~i~~~-~~~~l~~l~  201 (452)
                      ++.+..+.  .+..+....+++.-.+...+.|--.+...-++.+.  +.+   .      ..+...++.. ...++++.+
T Consensus        18 ~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPVal   97 (350)
T PRK09197         18 ENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVIL   97 (350)
T ss_pred             HCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEE
Confidence            34444443  48899999999999999999887765432222111  111   0      0011222211 122333322


Q ss_pred             cchhhhhhhhhhhhhcc-chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          202 PNLKVILQRSILFQQCH-ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~-~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      .. .        ++... .+.+.....+-.+.+++++++|..-|.+=.|.          .+.|+.++.-++++++|+..
T Consensus        98 HL-D--------Hg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~----------lpfEeNI~~TkevVe~Ah~~  158 (350)
T PRK09197         98 HT-D--------HCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSE----------EPLEENIEICSKYLERMAKA  158 (350)
T ss_pred             EC-C--------CCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCC----------CCHHHHHHHHHHHHHHHHHc
Confidence            10 0        00000 00000000000123444444458888654332          34688999999999999999


Q ss_pred             CCcEEEEEEeeecCCCCC----------CCCHHHHHHHHHHHH-HCCcC--EEEEcCCcCCC---cHHHHHHHHHHHHHh
Q 012949          281 SIPVRGYVSCVVGCPVEG----------AIPPSKVAYVAKELH-DMGCF--EISLGDTIGVG---TPGTVVPMLEAVMAV  344 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~----------r~d~e~l~~~a~~l~-~~Gad--~I~L~DT~G~~---~P~~v~~li~~l~~~  344 (452)
                      |+.|.+.|-..-|.++..          .++|+...+++++.- ..|+|  .|.+.-.=|.-   .|.--.++++.+++.
T Consensus       159 GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~  238 (350)
T PRK09197        159 GMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEY  238 (350)
T ss_pred             CCEEEEEEeccCCCcCCccccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHH
Confidence            999998888765544431          468888877776541 12236  34444444543   244455667777776


Q ss_pred             C--------CCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          345 V--------PVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       345 ~--------p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +        +++||.+|+=  -|+.-.....|++.|+.-|+.
T Consensus       239 v~~~~~~~~~~vPLVLHGg--SGipde~i~~ai~~GI~KINi  278 (350)
T PRK09197        239 VSKKFGLPAKPFDFVFHGG--SGSTLEEIREAVSYGVVKMNI  278 (350)
T ss_pred             HHHhhCCCCCCCCEEEeCC--CCCCHHHHHHHHHCCCeeEEe
Confidence            6        2567777764  588888999999999986654

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.80  E-value=0.2  Score=48.14  Aligned_cols=151  Identities=27%  Similarity=0.320  Sum_probs=103.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.||+.||+++- +|       +..+.++.++ +.+++.+.+-+                   +  
T Consensus        13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp-------~a~~~I~~l~~~~~~~~vGAGT-------------------V--   63 (201)
T PRK06015         13 DDVEHAVPLARALAAGGLPAIEITLR-TP-------AALDAIRAVAAEVEEAIVGAGT-------------------I--   63 (201)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHCCCCEEeeEe-------------------C--
Confidence            47899999999999999999999974 33       2344555554 33443333321                   0  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|.+.+.-.. .+                   .+++++|++.|+.+.           -+-.+|.
T Consensus        64 ----l~~e~a~~ai~aGA~FivSP~-~~-------------------~~vi~~a~~~~i~~i-----------PG~~Tpt  108 (201)
T PRK06015         64 ----LNAKQFEDAAKAGSRFIVSPG-TT-------------------QELLAAANDSDVPLL-----------PGAATPS  108 (201)
T ss_pred             ----cCHHHHHHHHHcCCCEEECCC-CC-------------------HHHHHHHHHcCCCEe-----------CCCCCHH
Confidence                124589999999999764221 11                   367799999998764           1334565


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHH---HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v---~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      ++.    .+.++|++.|-+       .|...   ..+++.++.-+|+++|-    -+=|....|.-.=+.+|+.
T Consensus       109 Ei~----~A~~~Ga~~vK~-------FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~  167 (201)
T PRK06015        109 EVM----ALREEGYTVLKF-------FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV  167 (201)
T ss_pred             HHH----HHHHCCCCEEEE-------CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence            544    357789998887       45322   36788888888875554    4567777899999999854

>TIGR02317 prpB methylisocitrate lyase

Probab=96.80  E-value=0.05  Score=54.94  Aligned_cols=216  Identities=16%  Similarity=0.062  Sum_probs=129.0

Q ss_pred             HHHHHHCCCCEEEEecCC-C-CCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSFV-S-PKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~-s-~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++...++|++.+=+++.. + ....|-  +-+.+++++.++.+.+ +.+++.+..-       .||+. +.++.+     
T Consensus        26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d-------~GyG~-~~~v~~-----   92 (285)
T TIGR02317        26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDAD-------TGFGE-AFNVAR-----   92 (285)
T ss_pred             HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCC-HHHHHH-----
Confidence            456677899999998542 1 112232  2356788888887643 3455544322       35666 555443     


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPSK  304 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~---~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e~  304 (452)
                         .++...++|+..|+|-+.+.+-+.-+.-+   .+.++..++++.+.+..+  +.++.. +..+    |+ .....+.
T Consensus        93 ---tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~I-iART----Da~~~~g~de  162 (285)
T TIGR02317        93 ---TVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVI-IART----DARAVEGLDA  162 (285)
T ss_pred             ---HHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEE-EEEc----CcccccCHHH
Confidence               78889999999999998875421111112   367888888755544333  222221 1111    11 1123566


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE--EEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL--AVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l--~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      ..+=++...++|||.|.+.   |.-+++++..+.+.+    | .|+  -+-.....++=  +.-..-++|+++|-....+
T Consensus       163 AI~Ra~ay~~AGAD~vfi~---g~~~~e~i~~~~~~i----~-~Pl~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~  232 (285)
T TIGR02317       163 AIERAKAYVEAGADMIFPE---ALTSLEEFRQFAKAV----K-VPLLANMTEFGKTPLF--TADELREAGYKMVIYPVTA  232 (285)
T ss_pred             HHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHH
Confidence            6666788889999999995   456777776655544    4 244  23322221111  2334456899999877766


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      +        ++-+.++++.+..++..|.
T Consensus       233 ~--------~aa~~a~~~~~~~l~~~g~  252 (285)
T TIGR02317       233 F--------RAMNKAAEAVYNEIKEHGT  252 (285)
T ss_pred             H--------HHHHHHHHHHHHHHHHcCC
Confidence            5        5667888888888876554

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=96.79  E-value=0.16  Score=51.36  Aligned_cols=194  Identities=18%  Similarity=0.162  Sum_probs=127.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCC--ceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGA--RLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~--~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+....+++.-.+.+.+.|--.++..-++.   ...+.+...++.. ...  ++++.+.. .          .+   
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHL-D----------Hg---   87 (288)
T TIGR00167        25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHL-D----------HG---   87 (288)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEEC-C----------CC---
Confidence            378899999999999999998876654432321   1123344444322 222  34432211 0          11   


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+.+|+++|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-..-|.++.   
T Consensus        88 -------~~~e~i~~ai~~GftSVMiDgS~----------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~  150 (288)
T TIGR00167        88 -------ASEEDCAQAVKAGFSSVMIDGSH----------EPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSV  150 (288)
T ss_pred             -------CCHHHHHHHHHcCCCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccc
Confidence                   12358899999999988875443          2468999999999999999999999888876555443   


Q ss_pred             -----CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          298 -----GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       298 -----~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                           ..++|+...+++   .+-|+|.+.++  -.=|.-  .|. -=.++++.+++.++ +||.+|+  .-|+.-.....
T Consensus       151 ~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHG--gSG~~~e~~~~  224 (288)
T TIGR00167       151 ADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHG--GSGIPDEEIKK  224 (288)
T ss_pred             ccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHH
Confidence                 145777655555   44588866553  222322  244 23557788888775 5788776  45788888999


Q ss_pred             HHHcCCCEEe
Q 012949          368 SLQMGISTVD  377 (452)
Q Consensus       368 Al~aGa~~VD  377 (452)
                      |+..|+.-|+
T Consensus       225 ai~~Gi~KiN  234 (288)
T TIGR00167       225 AISLGVVKVN  234 (288)
T ss_pred             HHHcCCeEEE
Confidence            9999987554

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>smart00518 AP2Ec AP endonuclease family 2

Probab=96.79  E-value=0.34  Score=47.61  Aligned_cols=222  Identities=15%  Similarity=0.140  Sum_probs=111.0

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCccc-ccC--CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVP-QLA--DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p-~~~--D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      +.++.+.+.|++.+|+-......+.+ .+.  +.+++.+.+++ .++++++..|-.-.       +.....++.+.....
T Consensus        14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~n-------l~s~d~~~r~~~~~~   85 (273)
T smart00518       14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLIN-------LASPDKEKVEKSIER   85 (273)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceec-------CCCCCHHHHHHHHHH
Confidence            45677888999999995432212211 111  12333333332 34556554442100       000001111110011


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ..+.++.|.+.|++.|.+..+..       ...++++.++++.+.++.+-+....|...|....+.+..--.+++.+.++
T Consensus        86 l~~~i~~A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l  158 (273)
T smart00518       86 LIDEIKRCEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVILLETTAGKGSQIGSTFEDLKEI  158 (273)
T ss_pred             HHHHHHHHHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEEEEeccCCCCCccCCCHHHHHHH
Confidence            23477888889999888754321       12345667766666555433222223433443221111112367777777


Q ss_pred             HHHHHHCCcCEEEEcCCc-----CC--CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          309 AKELHDMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ++.+....--.+++ |+.     |.  .+|+.+.++++.+.+.++ +-...+|+||..+.          .|-       
T Consensus       159 l~~v~~~~~~g~~l-D~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~-------  220 (273)
T smart00518      159 IDLIKELDRIGVCI-DTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS-------  220 (273)
T ss_pred             HHhcCCCCCeEEEE-EccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC-------
Confidence            76653210012222 443     22  247788888888876665 33478999999862          111       


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                        -+.+-.++| .|..+.+.+...|+..+
T Consensus       221 --~~d~H~~~G-~G~id~~~~~~~l~~~~  246 (273)
T smart00518      221 --GKDRHENLG-EGYIGFEPFRLLMADKR  246 (273)
T ss_pred             --CCccccCCC-CCCCChHHHHHHhhChh
Confidence              111122222 47899999988887643

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=96.78  E-value=0.29  Score=47.37  Aligned_cols=189  Identities=18%  Similarity=0.179  Sum_probs=117.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccc
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHA  219 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~  219 (452)
                      +...+.++..++++...+.|+..+.+-    |.|+|      ...+.++. .++++...+  |.         |..... 
T Consensus        12 ~p~~t~~~i~~lc~~A~~~~~~avcv~----p~~v~------~a~~~l~~-~~v~v~tVigFP~---------G~~~~~-   70 (211)
T TIGR00126        12 KADTTEEDIITLCAQAKTYKFAAVCVN----PSYVP------LAKELLKG-TEVRICTVVGFPL---------GASTTD-   70 (211)
T ss_pred             CCCCCHHHHHHHHHHHHhhCCcEEEeC----HHHHH------HHHHHcCC-CCCeEEEEeCCCC---------CCCcHH-
Confidence            346799999999999999999988883    33332      12223321 245554433  22         111111 


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                              .....++.|++.|++.|.+.+....+     ..-..++..+.+..+++.+.  |..+-+-+.       .+.
T Consensus        71 --------~K~~E~~~Av~~GAdEiDvv~n~g~l-----~~g~~~~v~~ei~~i~~~~~--g~~lKvIlE-------~~~  128 (211)
T TIGR00126        71 --------VKLYETKEAIKYGADEVDMVINIGAL-----KDGNEEVVYDDIRAVVEACA--GVLLKVIIE-------TGL  128 (211)
T ss_pred             --------HHHHHHHHHHHcCCCEEEeecchHhh-----hCCcHHHHHHHHHHHHHHcC--CCeEEEEEe-------cCC
Confidence                    12347888999999999999875532     12345667777777777764  666554222       123


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+.+.+.+.++.+.++|+|-|--.-  +.+..+|+++..|-+.+...+     .+..----- -...+++-+++|++++-
T Consensus       129 L~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~~v-----~IKaaGGir-t~~~a~~~i~aGa~riG  202 (211)
T TIGR00126       129 LTDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGDTI-----GVKASGGVR-TAEDAIAMIEAGASRIG  202 (211)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhccCC-----eEEEeCCCC-CHHHHHHHHHHhhHHhC
Confidence            5567888999999999999887642  224567888777766655433     232221111 23566777788998876


Q ss_pred             ec
Q 012949          378 CS  379 (452)
Q Consensus       378 ~S  379 (452)
                      +|
T Consensus       203 ts  204 (211)
T TIGR00126       203 AS  204 (211)
T ss_pred             cc
Confidence            65

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=96.78  E-value=0.24  Score=51.01  Aligned_cols=225  Identities=13%  Similarity=0.086  Sum_probs=148.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE-ecchhhhhhhhhhhhhccch
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL-TPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l-~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..++.++.++-|+...+.|...+.++.....+  +  .+.+++.+.++.+. ...+... +.+.                
T Consensus        82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~--~--~~~~~i~~~v~~Vk~~~~le~c~slG~----------------  141 (335)
T COG0502          82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGP--G--RDMEEVVEAIKAVKEELGLEVCASLGM----------------  141 (335)
T ss_pred             hcCCHHHHHHHHHHHHHcCCceEEEEEeccCC--C--ccHHHHHHHHHHHHHhcCcHHhhccCC----------------
Confidence            45889999999999999997777776543211  1  46677777777654 2222211 1221                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                             ...+..+.++++|++...--.- ..+.|.+.....|.|+=++    .++.+|+.|++|.....  +|-.    
T Consensus       142 -------l~~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~----tl~~vk~~Gi~vcsGgI--~GlG----  204 (335)
T COG0502         142 -------LTEEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLN----TLENVREAGIEVCSGGI--VGLG----  204 (335)
T ss_pred             -------CCHHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHH----HHHHHHHcCCccccceE--ecCC----
Confidence                   1235788899999998776443 4445555556778886665    45899999999864444  3321    


Q ss_pred             CCHHHHHHHHHHHHHCC-cCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMG-CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~G-ad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      -+.++-.+.+..+.+.. ++.|-|      ++|    .--++|.+.-.+|+..|=.+|...|-+- =..-.+.-.....+
T Consensus       205 Es~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~  283 (335)
T COG0502         205 ETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALA  283 (335)
T ss_pred             CCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHH
Confidence            24567677788888887 776654      222    3356778888889998888897433332 22233444457788


Q ss_pred             HHcCCCEEeecc-cCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949          369 LQMGISTVDCSV-AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV  414 (452)
Q Consensus       369 l~aGa~~VD~Sv-~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i  414 (452)
                      +.+||+.|=++. ...         +.+.+.|+-...++.+|.....
T Consensus       284 ~~aGansi~~g~~~lt---------t~~~~~e~D~~~l~~lgl~~e~  321 (335)
T COG0502         284 FMAGANSIFVGDKYLT---------TPGPDEDKDLELLKDLGLEPEL  321 (335)
T ss_pred             HHhccceeeecceEee---------cCCCCchhHHHHHHHcCCCccc
Confidence            899999776666 333         3358889999999988876544

>PLN02428 lipoic acid synthase

Probab=96.78  E-value=0.096  Score=54.33  Aligned_cols=146  Identities=16%  Similarity=0.202  Sum_probs=99.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..+.++..++++.+.+.|++++-+.+.....+ |.  .....++++.|++ .+.+++.+++|...               
T Consensus       129 ~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~pdf~---------------  192 (349)
T PLN02428        129 PPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVPDFR---------------  192 (349)
T ss_pred             CCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCcccc---------------
Confidence            35677888999999999999988876532111 11  1122455566664 35677777777543               


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc---CCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI---NCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCP  295 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~---~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p  295 (452)
                             +..+.++..+++|.+.+..-.-.++...+ +.   +.+.++.+    ++++.||+.  |+.+..+++.-+|  
T Consensus       193 -------~d~elL~~L~eAG~d~i~hnlETv~rL~~-~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~MvGLG--  258 (349)
T PLN02428        193 -------GDLGAVETVATSGLDVFAHNIETVERLQR-IVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIMLGLG--  258 (349)
T ss_pred             -------CCHHHHHHHHHcCCCEEccCccCcHHHHH-HhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEEecC--
Confidence                   12357888899999998876655554333 33   34666666    455788888  9988878885432  


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEEEc
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEISLG  323 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L~  323 (452)
                       +   +.+.+.+.++.+.+.|+|.+.|.
T Consensus       259 -E---T~Edv~e~l~~Lrelgvd~vtig  282 (349)
T PLN02428        259 -E---TDEEVVQTMEDLRAAGVDVVTFG  282 (349)
T ss_pred             -C---CHHHHHHHHHHHHHcCCCEEeec
Confidence             2   57899999999999999998664

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=96.74  E-value=0.42  Score=48.22  Aligned_cols=168  Identities=17%  Similarity=0.218  Sum_probs=94.6

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----Hhcc---CCce
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLE---GARL  197 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~---~~~l  197 (452)
                      -.-|+.+|+ |-..--+..++.+..++-+..+.+.|.+.|++|.-++ |. .+.+ +.++.++++    +.+.   +..+
T Consensus        17 imGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg-~~~v-~~eeE~~Rv~pvI~~l~~~~~~~I   93 (282)
T PRK11613         17 VMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPG-AAEV-SVEEELDRVIPVVEAIAQRFEVWI   93 (282)
T ss_pred             EEEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHHHHHhcCCCeE
Confidence            345666665 4443334457899999999999999999999996543 32 2222 333433333    3322   2222


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++  ...                        ..+-+++|+++|++.|.=..+.++           ++.+       +.+
T Consensus        94 SI--DT~------------------------~~~va~~AL~~GadiINDI~g~~d-----------~~~~-------~~~  129 (282)
T PRK11613         94 SV--DTS------------------------KPEVIRESAKAGAHIINDIRSLSE-----------PGAL-------EAA  129 (282)
T ss_pred             EE--ECC------------------------CHHHHHHHHHcCCCEEEECCCCCC-----------HHHH-------HHH
Confidence            21  111                        124678899999998754433322           1112       334


Q ss_pred             HhCCCcEEEEEEeeecCCCCCC--CC--------HHHHHHHHHHHHHCCcC--EEEEcCC-cCCC-cHHHHHHHHHHHHH
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGA--IP--------PSKVAYVAKELHDMGCF--EISLGDT-IGVG-TPGTVVPMLEAVMA  343 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r--~d--------~e~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~li~~l~~  343 (452)
                      ++.|..+.  |+..-|.|....  ..        .+++.+.++.+.++|++  .|.+ |. .|.. ++++-.++++.+..
T Consensus       130 a~~~~~vV--lmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~k~~~~n~~ll~~l~~  206 (282)
T PRK11613        130 AETGLPVC--LMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLL-DPGFGFGKNLSHNYQLLARLAE  206 (282)
T ss_pred             HHcCCCEE--EEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcCCCHHHHHHHHHHHHH
Confidence            56677665  555444332211  11        14666777888999986  6665 54 3442 35566666666543

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=96.65  E-value=0.34  Score=48.93  Aligned_cols=220  Identities=14%  Similarity=0.051  Sum_probs=128.8

Q ss_pred             HHHHHHC---------CCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccc
Q 012949          154 IRRLVSS---------GLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       154 ~~~L~~~---------Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ++...++         |++.|=+++..  ....+|-  +-+.++.++.++.+.. +.+++++..-.       + . -+.
T Consensus        22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~-------G-g-~~~   92 (285)
T TIGR02320        22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDT-------G-G-NFE   92 (285)
T ss_pred             HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCC-------C-C-CHH
Confidence            4555666         99999887542  1112232  2345777887776543 33443332111       1 0 111


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHH---hhh---cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFS---KSN---INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~---~~~---~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                      ++        .+.++...++|+.-|.|-+...+-+.   ..+   .=.+.++..++++.+++. +. +.++.+ +..+  
T Consensus        93 ~v--------~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a-~~-~~~~~I-iART--  159 (285)
T TIGR02320        93 HF--------RRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA-QT-TEDFMI-IARV--  159 (285)
T ss_pred             HH--------HHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh-cc-CCCeEE-EEec--
Confidence            11        23678888999999999776543211   111   114678888877554433 22 333321 1110  


Q ss_pred             CCCC--CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          294 CPVE--GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       294 ~p~~--~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                        |+  .....+...+-++...++|||.|.+.  .+..+++++.++++.+...+|..|+-+.. ..++.-  ..-.--++
T Consensus       160 --Da~~~~~~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~l  232 (285)
T TIGR02320       160 --ESLILGKGMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDA  232 (285)
T ss_pred             --ccccccCCHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHc
Confidence              11  11246778888999999999999997  34678999999999998877777774433 223332  23344468


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          372 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       372 Ga~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      |+++|-....-+        ++-..++++++..+...|.
T Consensus       233 G~~~v~~~~~~~--------~aa~~a~~~~~~~~~~~g~  263 (285)
T TIGR02320       233 GISVVIYANHLL--------RAAYAAMQQVAERILEHGR  263 (285)
T ss_pred             CCCEEEEhHHHH--------HHHHHHHHHHHHHHHHcCC
Confidence            999976554433        4556777888777776543

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PTZ00413 lipoate synthase; Provisional

Probab=96.64  E-value=0.1  Score=54.63  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=101.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhhhhhcc
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      ..++.++..++|+...+.|++++-+++..... +|. ..++.+.+.++.+    +++.+.+++|...             
T Consensus       175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D-~ga~~~a~~I~~Ir~~~p~~~IevligDf~-------------  239 (398)
T PTZ00413        175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPD-GGASHVARCVELIKESNPELLLEALVGDFH-------------  239 (398)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CCh-hhHHHHHHHHHHHHccCCCCeEEEcCCccc-------------
Confidence            35799999999999999999999998754321 110 1234444444433    5677777777542             


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc--CCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeec
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI--NCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVG  293 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~--~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g  293 (452)
                               ...+.++..+++|++.++--+-.++.+....-  +-+.++.++.    ++.||+.   |+.+...++  +|
T Consensus       240 ---------g~~e~l~~L~eAG~dvynHNLETv~rLyp~VRt~~atYe~sLe~----Lr~AKe~f~~gi~tcSGiI--VG  304 (398)
T PTZ00413        240 ---------GDLKSVEKLANSPLSVYAHNIECVERITPYVRDRRASYRQSLKV----LEHVKEFTNGAMLTKSSIM--LG  304 (398)
T ss_pred             ---------cCHHHHHHHHhcCCCEEecccccCHhHHHHHccCcCCHHHHHHH----HHHHHHHhcCCceEeeeeE--ec
Confidence                     12347889999999998877666665544332  2467777654    4677765   777765666  44


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGD  324 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D  324 (452)
                       .-+   +.+++.++++.+.+.|+|.+.|.-
T Consensus       305 -LGE---T~eEvie~m~dLrelGVDivtIGQ  331 (398)
T PTZ00413        305 -LGE---TEEEVRQTLRDLRTAGVSAVTLGQ  331 (398)
T ss_pred             -CCC---CHHHHHHHHHHHHHcCCcEEeecc
Confidence             112   468899999999999999998843

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=96.63  E-value=0.11  Score=52.66  Aligned_cols=218  Identities=11%  Similarity=0.043  Sum_probs=129.8

Q ss_pred             HHHHHHCCCCEEEEec-CC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          154 IRRLVSSGLPVVEATS-FV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~-~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++.+.++|++.+=+++ ..  +...+|-  +-+.+++++.++++.+ +.+++++..-       .||+..+. +.     
T Consensus        29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d-------tGyG~~~~-v~-----   95 (294)
T TIGR02319        29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD-------AGYGNAMS-VW-----   95 (294)
T ss_pred             HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCCcHH-HH-----
Confidence            5677889999998743 22  1112232  2345778888877643 4555555322       35665543 22     


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHh---hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSK---SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPS  303 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~---~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e  303 (452)
                         ..+++..++|+.-|+|-+.+.+-+.-   .+.=.+.++..++++.+.+..++-.+-+.   ..+    |+ .....+
T Consensus        96 ---r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~---ART----Da~~~~g~d  165 (294)
T TIGR02319        96 ---RATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTII---ART----DARESFGLD  165 (294)
T ss_pred             ---HHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEE---EEe----cccccCCHH
Confidence               26788899999999999886542111   11113788888888666544443222221   111    11 112456


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ...+=++...++|||.|.+.   |.-+++++..+.+.+.  .|. .+-+.......+=  +.-..-++|+++|-.....+
T Consensus       166 eaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~  237 (294)
T TIGR02319       166 EAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW  237 (294)
T ss_pred             HHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH
Confidence            66667788889999999995   5778888777666542  232 1233333322222  23344467999998777766


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                              ++-..++.+.+..|+..|.
T Consensus       238 --------~aa~~a~~~~~~~l~~~G~  256 (294)
T TIGR02319       238 --------MAAASVLRKLFTELREAGT  256 (294)
T ss_pred             --------HHHHHHHHHHHHHHHHcCC
Confidence                    4567888888888876553

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=96.61  E-value=0.15  Score=52.07  Aligned_cols=142  Identities=15%  Similarity=0.055  Sum_probs=90.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++.+.+.|+..|-++..     .|-+ .|..++++.+++..+..-..++.|-. ++              
T Consensus        44 ~ls~eei~~li~~~~~~Gv~~I~~tGG-----EPllr~dl~~li~~i~~~~~l~~i~itTNG~-ll--------------  103 (329)
T PRK13361         44 VLSLEELAWLAQAFTELGVRKIRLTGG-----EPLVRRGCDQLVARLGKLPGLEELSLTTNGS-RL--------------  103 (329)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECc-----CCCccccHHHHHHHHHhCCCCceEEEEeChh-HH--------------
Confidence            489999999999999999999988642     1333 24556666666554432223343321 01              


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d  301 (452)
                             .+.++..+++|++.|.|.+-..+......++  ....++++.+.++.+++.|+ .|..+....      ...+
T Consensus       104 -------~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~--~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~------~g~N  168 (329)
T PRK13361        104 -------ARFAAELADAGLKRLNISLDTLRPELFAALT--RNGRLERVIAGIDAAKAAGFERIKLNAVIL------RGQN  168 (329)
T ss_pred             -------HHHHHHHHHcCCCeEEEEeccCCHHHhhhhc--CCCCHHHHHHHHHHHHHcCCCceEEEEEEE------CCCC
Confidence                   1256777889999999986443221111221  12356777788899999998 666443321      1235


Q ss_pred             HHHHHHHHHHHHHCCcCEE
Q 012949          302 PSKVAYVAKELHDMGCFEI  320 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I  320 (452)
                      .+.+.++++.+.+.|++..
T Consensus       169 ~~ei~~~~~~~~~~gi~~~  187 (329)
T PRK13361        169 DDEVLDLVEFCRERGLDIA  187 (329)
T ss_pred             HHHHHHHHHHHHhcCCeEE
Confidence            6888999999999998743

>PRK09234 fbiC FO synthase; Reviewed

Probab=96.61  E-value=0.24  Score=57.13  Aligned_cols=237  Identities=11%  Similarity=0.051  Sum_probs=137.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHH---HHHHHh-ccCCceeEEecchhhhhhhhhhhhhc
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDV---MEAVRD-LEGARLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v---~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ...++.++.++.++...+.|+..|-+-+...|.     .+.+.+   ++.+++ .+++.+-+++|.--.-+.+..++   
T Consensus       554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~-----~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl---  625 (843)
T PRK09234        554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPE-----LPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGL---  625 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCC-----cCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCC---
Confidence            346999999999999999999999987655554     123344   444443 34566655554211000000111   


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh---hhc---CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK---SNI---NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~---~~~---~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                                ...+.+++++++|++.+.-  ..-+++..   ..+   .++.++    -.++++.|+++|+++...++  
T Consensus       626 ----------~~~e~l~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~~~----wle~i~~Ah~lGi~~~stmm--  687 (843)
T PRK09234        626 ----------SIREWLTALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPTAE----WIEVVTTAHEVGLRSSSTMM--  687 (843)
T ss_pred             ----------CHHHHHHHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCHHH----HHHHHHHHHHcCCCcccceE--
Confidence                      1234678899999998752  11122111   111   223332    24778999999999987777  


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHHCCcC------EEE----EcCC--------cCCCcHHHHHHHHHHHHHhCCC-c-cEE
Q 012949          292 VGCPVEGAIPPSKVAYVAKELHDMGCF------EIS----LGDT--------IGVGTPGTVVPMLEAVMAVVPV-E-KLA  351 (452)
Q Consensus       292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad------~I~----L~DT--------~G~~~P~~v~~li~~l~~~~p~-~-~l~  351 (452)
                      ||-.    -++++.++.+..+.+.+.+      -|-    -.+|        ....+|.+...+++..|=.+|+ + +|.
T Consensus       688 ~G~~----Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iq  763 (843)
T PRK09234        688 YGHV----DTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQ  763 (843)
T ss_pred             EcCC----CCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCccccc
Confidence            4422    2577888888888877643      111    2232        1236778888888777766663 1 232


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-cccHHHHHHHHHcCCCC
Q 012949          352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-NVATEDVVYMLSGLGVE  411 (452)
Q Consensus       352 vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-NaalE~vv~~L~~~Gi~  411 (452)
                      .-. .++|.  .-+..++.+||+-+.+|+..====+.|....| ..+.+++..+.+..|..
T Consensus       764 a~w-v~lg~--~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~  821 (843)
T PRK09234        764 TSW-VKLGV--EGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP  821 (843)
T ss_pred             chh-hhcCH--HHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            222 34443  34678999999988877642100011111223 35678888888876653

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=96.56  E-value=0.11  Score=51.35  Aligned_cols=144  Identities=14%  Similarity=0.069  Sum_probs=76.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|++.|.++..  +...........+...+.+.+++++|++.|+.+.  +... ..+  ...+++.+.++++
T Consensus        98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~--lE~~-~~~--~~~t~~~~~~li~  170 (279)
T TIGR00542        98 KAIQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLA--VEIM-DTP--FMSSISKWLKWDH  170 (279)
T ss_pred             HHHHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeC-CCc--hhcCHHHHHHHHH
Confidence            4678888899998876531  1100000011245667778889999999998765  3321 111  1224444444443


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  389 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  389 (452)
                         +.+-+.+.+ -|+.-...-.  .+..+.++. ..+--..+|.+|..+            |.  .+.  ..+      
T Consensus       171 ---~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~------------~~--~~~--~p~------  222 (279)
T TIGR00542       171 ---YLNSPWFTLYPDIGNLSAWD--NDVQMELQL-GIDKIVAIHLKDTKP------------GQ--FKD--VPF------  222 (279)
T ss_pred             ---HcCCCceEEEeCcChhhhcc--CCHHHHHHH-hhhhEEEEEeCCCCC------------Cc--cCC--cCC------
Confidence               334343333 4664221100  112222322 223347899999754            11  111  122      


Q ss_pred             CCCCCcccHHHHHHHHHcCCCC
Q 012949          390 KGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       390 ~graGNaalE~vv~~L~~~Gi~  411 (452)
                        +.|..+...++.+|+..|++
T Consensus       223 --G~G~id~~~~~~aL~~~gy~  242 (279)
T TIGR00542       223 --GEGCVDFERCFKTLKQLNYR  242 (279)
T ss_pred             --CCCccCHHHHHHHHHHhCCc
Confidence              25789999999999987765

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.55  E-value=0.12  Score=52.42  Aligned_cols=218  Identities=17%  Similarity=0.103  Sum_probs=128.6

Q ss_pred             HHHHHHCCCCEEEEecC-C--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          154 IRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++...++|++.|=++++ +  +...+|-  +-+.+++++.++++.+ +.+++++..-       .||+ .+.++.+    
T Consensus        30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d-------~GyG-~~~~v~r----   97 (292)
T PRK11320         30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID-------TGFG-GAFNIAR----   97 (292)
T ss_pred             HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-------CCCC-CHHHHHH----
Confidence            56677889999988754 1  2222332  2356788888887644 3455555322       3566 3444433    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CCCCHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNIN---CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GAIPPS  303 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~---~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r~d~e  303 (452)
                          .+++..++|+.-|+|-+.+.+-+.-+.-+   .+.++..++++.+.+..+  +.+... +..+    |+ .....+
T Consensus        98 ----~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~I-iART----Da~~~~g~d  166 (292)
T PRK11320         98 ----TVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVI-MART----DALAVEGLD  166 (292)
T ss_pred             ----HHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEE-EEec----CcccccCHH
Confidence                78888999999999998775422211112   378888888865544433  333221 1111    11 112356


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ...+=++...++|||.|.+.   |.-++++++++.+.+.  .|. .+-+-.....++=  +.-.--++|+++|-.....+
T Consensus       167 eAI~Ra~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~~--~Pl-~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~  238 (292)
T PRK11320        167 AAIERAQAYVEAGADMIFPE---AMTELEMYRRFADAVK--VPI-LANITEFGATPLF--TTEELASAGVAMVLYPLSAF  238 (292)
T ss_pred             HHHHHHHHHHHcCCCEEEec---CCCCHHHHHHHHHhcC--CCE-EEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH
Confidence            66666888889999999995   4667888877776552  232 1122221111111  22233467999987776655


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                              ++-..++++++..++..|.
T Consensus       239 --------~aa~~a~~~~~~~l~~~g~  257 (292)
T PRK11320        239 --------RAMNKAAENVYEAIRRDGT  257 (292)
T ss_pred             --------HHHHHHHHHHHHHHHHcCC
Confidence                    4567778888887776554

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.55  E-value=0.3  Score=48.45  Aligned_cols=184  Identities=11%  Similarity=0.032  Sum_probs=114.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      =+.++..++++.+.++|+..+--|+|-   ||.-.-.+ . ++-++.+++. ....+.+++--.                
T Consensus        26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G-~~gl~~L~~~~~~~Gl~~~Tev~----------------   87 (250)
T PRK13397         26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-G-LQGIRYLHEVCQEFGLLSVSEIM----------------   87 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-C-HHHHHHHHHHHHHcCCCEEEeeC----------------
Confidence            467899999999999999999999863   34311111 1 2233333322 122333333111                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                              ..++++.+.+ .+|.+.|....-                .+ .++++++.+.|.+|.  |+.      ....
T Consensus        88 --------d~~~v~~~~e-~vdilqIgs~~~----------------~n-~~LL~~va~tgkPVi--lk~------G~~~  133 (250)
T PRK13397         88 --------SERQLEEAYD-YLDVIQVGARNM----------------QN-FEFLKTLSHIDKPIL--FKR------GLMA  133 (250)
T ss_pred             --------CHHHHHHHHh-cCCEEEECcccc----------------cC-HHHHHHHHccCCeEE--EeC------CCCC
Confidence                    1247777777 689888764321                11 245566667788875  442      1146


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHH-HH--HHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGT-VV--PMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~-v~--~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +++.+...++.+.+.|...|.|+-  +.++-+|.+ +.  .-+..+++.+. .||.+   |.=..+-+..+-+++|+.+|
T Consensus       134 t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~G  212 (250)
T PRK13397        134 TIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVG  212 (250)
T ss_pred             CHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhC
Confidence            789999999999999998888886  445544433 22  23566666553 34333   44333445568899999999


Q ss_pred             CC--EEeeccc
Q 012949          373 IS--TVDCSVA  381 (452)
Q Consensus       373 a~--~VD~Sv~  381 (452)
                      |+  .|+.-..
T Consensus       213 AdGl~IE~H~~  223 (250)
T PRK13397        213 ANGIMMEVHPD  223 (250)
T ss_pred             CCEEEEEecCC
Confidence            99  8887665

>PRK12928 lipoyl synthase; Provisional

Probab=96.53  E-value=0.098  Score=52.90  Aligned_cols=162  Identities=20%  Similarity=0.251  Sum_probs=106.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.++.+++++.+.+.|+++|-+++..... .|..  ....++++.|++. +.+++-+++|....         .    
T Consensus        86 ~~~~eei~~~a~~~~~~G~keivitg~~~dD-l~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~---------~----  151 (290)
T PRK12928         86 PLDPDEPERVAEAVAALGLRYVVLTSVARDD-LPDGGAAHFVATIAAIRARNPGTGIEVLTPDFWG---------G----  151 (290)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEEeCCc-ccccCHHHHHHHHHHHHhcCCCCEEEEecccccc---------C----
Confidence            5899999999999999999998887643211 1111  1235666777664 55677677664320         0    


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeeecCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~g~p~~  297 (452)
                              ..+.++..+++|.+.+...+..+|...+ -+-+.+.++.+    ++++.|++.|  +.+...++.  |. -+
T Consensus       152 --------~~e~L~~l~~Ag~~i~~hnlEt~~~vl~~m~r~~t~e~~l----e~l~~ak~~gp~i~~~s~iIv--G~-GE  216 (290)
T PRK12928        152 --------QRERLATVLAAKPDVFNHNLETVPRLQKAVRRGADYQRSL----DLLARAKELAPDIPTKSGLML--GL-GE  216 (290)
T ss_pred             --------CHHHHHHHHHcCchhhcccCcCcHHHHHHhCCCCCHHHHH----HHHHHHHHhCCCceecccEEE--eC-CC
Confidence                    1236778888998877766555553332 22344555544    6668999999  888777774  42 22


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcC----------CcCCCcHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGD----------TIGVGTPGTVVPM  337 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D----------T~G~~~P~~v~~l  337 (452)
                         +.+.+.+.++.+.+.+++.+.+.=          -..+.+|++...+
T Consensus       217 ---T~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~  263 (290)
T PRK12928        217 ---TEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLPVQRYWTPEEFEAL  263 (290)
T ss_pred             ---CHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCceeeccCHHHHHHH
Confidence               468888999999999999888722          2345566666554

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.46  E-value=0.42  Score=45.96  Aligned_cols=156  Identities=19%  Similarity=0.205  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccC-CceeEEecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEG-ARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .+.++-.++++.|.+.|++.||+++-. +       +..+.++.+++ .++ +.+.+-+=                    
T Consensus        19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~-~-------~~~~~i~~l~~~~~~~~~iGaGTV--------------------   70 (206)
T PRK09140         19 ITPDEALAHVGALIEAGFRAIEIPLNS-P-------DPFDSIAALVKALGDRALIGAGTV--------------------   70 (206)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-c-------cHHHHHHHHHHHcCCCcEEeEEec--------------------
Confidence            488999999999999999999998632 2       33444555543 332 23322110                    


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                           ...++++.|+++|++.++...  .+                  .++++++++.|..+.      .|     -.++
T Consensus        71 -----~~~~~~~~a~~aGA~fivsp~--~~------------------~~v~~~~~~~~~~~~------~G-----~~t~  114 (206)
T PRK09140         71 -----LSPEQVDRLADAGGRLIVTPN--TD------------------PEVIRRAVALGMVVM------PG-----VATP  114 (206)
T ss_pred             -----CCHHHHHHHHHcCCCEEECCC--CC------------------HHHHHHHHHCCCcEE------cc-----cCCH
Confidence                 123589999999999888632  22                  256678888888764      22     2345


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.+    ..+.++|+|.|.+=-+ +...|+.    ++.+++.+| .+++-.=    =|.-..|.-.-+++|++.|=
T Consensus       115 ~E~----~~A~~~Gad~vk~Fpa-~~~G~~~----l~~l~~~~~~~ipvvai----GGI~~~n~~~~~~aGa~~va  177 (206)
T PRK09140        115 TEA----FAALRAGAQALKLFPA-SQLGPAG----IKALRAVLPPDVPVFAV----GGVTPENLAPYLAAGAAGFG  177 (206)
T ss_pred             HHH----HHHHHcCCCEEEECCC-CCCCHHH----HHHHHhhcCCCCeEEEE----CCCCHHHHHHHHHCCCeEEE
Confidence            443    4456789999886222 2233554    444555554 3444332    37778999999999999764

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=96.46  E-value=0.77  Score=43.17  Aligned_cols=157  Identities=24%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-.++++.|.+.|++.||+.+-. +       +..+.++.+++ .+++.+.+-. ..                   
T Consensus        13 ~~~~~~~~~~~~l~~~G~~~vev~~~~-~-------~~~~~i~~l~~~~~~~~iGag~-v~-------------------   64 (190)
T cd00452          13 DDAEDALALAEALIEGGIRAIEITLRT-P-------GALEAIRALRKEFPEALIGAGT-VL-------------------   64 (190)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCEEEEEe-CC-------------------
Confidence            367888999999999999999998632 1       12334455543 2333333211 00                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                           +.+.++.++++|.+.|+...  ++                  .++++++++.|..+.      .|     ..+++
T Consensus        65 -----~~~~~~~a~~~Ga~~i~~p~--~~------------------~~~~~~~~~~~~~~i------~g-----v~t~~  108 (190)
T cd00452          65 -----TPEQADAAIAAGAQFIVSPG--LD------------------PEVVKAANRAGIPLL------PG-----VATPT  108 (190)
T ss_pred             -----CHHHHHHHHHcCCCEEEcCC--CC------------------HHHHHHHHHcCCcEE------CC-----cCCHH
Confidence                 12488999999999997432  22                  256788888887764      12     22454


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .+    ..+.++|+|.|.+ +...   |. -.++++.+++.+|..++..=    =|.-..|....+++||+.|-+
T Consensus       109 e~----~~A~~~Gad~i~~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~~~v~v  170 (190)
T cd00452         109 EI----MQALELGADIVKL-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGVVAVGG  170 (190)
T ss_pred             HH----HHHHHCCCCEEEE-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCCEEEEE
Confidence            43    3445789999998 4432   22 45567777777765555443    355568999999999886643

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=96.44  E-value=0.72  Score=44.82  Aligned_cols=210  Identities=15%  Similarity=0.090  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhh--hhhh-hhhhhccchhhhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVI--LQRS-ILFQQCHASVISSNL  226 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~--i~r~-~~~~~~~~~~i~~~~  226 (452)
                      -.+.++.+.++|++.||+..+..       .+.+++.+.++. .+++++++.......  .+|. ..+........+   
T Consensus        16 l~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   84 (254)
T TIGR03234        16 FLERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFRE---   84 (254)
T ss_pred             HHHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHH---
Confidence            34566677799999999965321       244555555543 466666553111000  0000 000000000011   


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCCCCC
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGAI  300 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~~r~  300 (452)
                       ...+.++.|.+.|++.|++..+...      .+.+    .+...+.+.+++++|++.|+.+.  +...  +.+|...-.
T Consensus        85 -~~~~~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~--lE~~~~~~~~~~~l~  155 (254)
T TIGR03234        85 -GVALAIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLL--IEPINSFDMPGFFLT  155 (254)
T ss_pred             -HHHHHHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE--EEECCcccCCCChhc
Confidence             1124677888899999987654211      1112    23455667888899999998765  3321  101111123


Q ss_pred             CHHHHHHHHHHHHHCCcCEE-EEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          301 PPSKVAYVAKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +++...++++.+   +.+.+ ..-|+.=...- +...++++.+    .+--..+|..|+.|.                  
T Consensus       156 t~~~~~~li~~v---~~~~~~i~~D~~h~~~~~e~~~~~i~~~----~~~i~~vHi~D~~~~------------------  210 (254)
T TIGR03234       156 TTEQALAVIDDV---GRENLKLQYDLYHMQRMGGDLARTLAAY----AAHIGHVQIADNPGR------------------  210 (254)
T ss_pred             CHHHHHHHHHHh---CCCCEeEeeehhhhhhhCCCHHHHHHHh----hccEeEEEeCCCCCC------------------
Confidence            555666665544   43333 23365422211 1223333333    332367888875320                  


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949          379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV  414 (452)
Q Consensus       379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i  414 (452)
                        .-       + +.|..+..+++..|+..|++--+
T Consensus       211 --~~-------~-G~G~id~~~il~~L~~~gy~g~~  236 (254)
T TIGR03234       211 --HE-------P-GTGEINYRFLFAVLDRLGYDGWV  236 (254)
T ss_pred             --CC-------C-CCCccCHHHHHHHHHHCCCCceE
Confidence              01       2 25889999999999988876433

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=96.42  E-value=0.27  Score=48.34  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=79.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++.|...|++.|++...  +.+.........+...+.+.++.++|++.|+.+.  +...   +...-.+++.+..+++
T Consensus        98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~---~~~~~~~~~~~~~l~~  170 (284)
T PRK13210         98 KAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLA--VEIM---DTPFMNSISKWKKWDK  170 (284)
T ss_pred             HHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEE--EEec---CccccCCHHHHHHHHH
Confidence            4677788899999987421  1000000112346677788889999999998754  3321   1111234555665655


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  389 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  389 (452)
                      .+   +-+.+.++ |+. .+.=. =.+....++. ..+--..+|.+|..+.-..      ..|..  .  -..+      
T Consensus       171 ~v---~~~~~~~~~D~~-h~~~~-~~~~~~~l~~-~~~~i~~vHikD~~~~~~~------~~g~~--~--~~p~------  228 (284)
T PRK13210        171 EI---DSPWLTVYPDVG-NLSAW-GNDVWSELKL-GIDHIAAIHLKDTYAVTET------SKGQF--R--DVPF------  228 (284)
T ss_pred             Hc---CCCceeEEecCC-hhhhc-CCCHHHHHHH-hcCeEEEEEeccccccccC------CCCcc--c--cccC------
Confidence            44   44444443 652 11100 0112223322 3333478999997542100      00110  0  0112      


Q ss_pred             CCCCCcccHHHHHHHHHcCCCC
Q 012949          390 KGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       390 ~graGNaalE~vv~~L~~~Gi~  411 (452)
                        +.|+++..+++.+|+..|++
T Consensus       229 --G~G~id~~~~~~~L~~~gy~  248 (284)
T PRK13210        229 --GEGCVDFVGIFKTLKELNYR  248 (284)
T ss_pred             --CCcccCHHHHHHHHHHcCCC
Confidence              25889999999999987655

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.42  E-value=0.041  Score=57.03  Aligned_cols=101  Identities=22%  Similarity=0.181  Sum_probs=72.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +++..|++.|+|.|.+-.+  ++-.+.. .+.|.++    +.+.|++|+++|.++.+.+....     .....+.+.+..
T Consensus        17 ~~l~~ai~~GADaVY~G~~--~~~~R~~a~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~~l   85 (347)
T COG0826          17 EDLKAAIAAGADAVYIGEK--EFGLRRRALNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETLERYL   85 (347)
T ss_pred             HHHHHHHHcCCCEEEeCCc--ccccccccccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHHHH
Confidence            5889999999998877644  2222221 3556655    67899999999998876555321     222345678899


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      +.+.++|+|.|.++|.          -+|..+++..|+.+|.+
T Consensus        86 ~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~  118 (347)
T COG0826          86 DRLVELGVDAVIVADP----------GLIMLARERGPDLPIHV  118 (347)
T ss_pred             HHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEE
Confidence            9999999999999994          36777888888765544

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.29  Score=46.70  Aligned_cols=185  Identities=17%  Similarity=0.219  Sum_probs=111.8

Q ss_pred             HHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCc--e--eEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          153 LIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGAR--L--PVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~--l--~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      =++.|.++|.+.+-+-..- -.|+|.+.=-.-+.+.+|+..+..  +  -.++-+-.                       
T Consensus        22 e~~~~l~~GadwlHlDVMD-g~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Pe-----------------------   77 (224)
T KOG3111|consen   22 ECKKMLDAGADWLHLDVMD-GHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPE-----------------------   77 (224)
T ss_pred             HHHHHHHcCCCeEEEeeec-ccccCCcccchHHHHHHHhccCCCcceeEEEeecCHH-----------------------
Confidence            3567788999988774211 013344432234677787643321  1  11222211                       


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                        +-++..+.+|++.+.+-.-+                .+...++++++|+.|+++...|-     |   -++.+.+..+
T Consensus        78 --q~V~~~a~agas~~tfH~E~----------------~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~  131 (224)
T KOG3111|consen   78 --QWVDQMAKAGASLFTFHYEA----------------TQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPL  131 (224)
T ss_pred             --HHHHHHHhcCcceEEEEEee----------------ccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHh
Confidence              24567788999987776532                23456889999999999875443     2   2456666666


Q ss_pred             HHHHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          309 AKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      +..     +|.+-+ =|+     |.---+++-.-|+.||+++|...+++    |-|++..|+-.+.+|||+.+=+.-+=+
T Consensus       132 ~~~-----~D~vLv-MtVePGFGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf  201 (224)
T KOG3111|consen  132 AEH-----VDMVLV-MTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF  201 (224)
T ss_pred             hcc-----ccEEEE-EEecCCCchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEecceee
Confidence            652     232211 121     22223455666889999999876766    779999999999999999663322222


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHc
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~  407 (452)
                                |-.+-.+++..|+.
T Consensus       202 ----------~a~d~~~vi~~lr~  215 (224)
T KOG3111|consen  202 ----------GAADPSDVISLLRN  215 (224)
T ss_pred             ----------cCCCHHHHHHHHHH
Confidence                      23566777776663

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=96.41  E-value=0.27  Score=49.47  Aligned_cols=237  Identities=18%  Similarity=0.157  Sum_probs=145.9

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS  211 (452)
Q Consensus       135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~  211 (452)
                      +++.+..+.  ....+....+++...+.+-+.|--.+...-++...   ...+...++.+ ....+++.... .      
T Consensus        14 ke~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg---~~~~~~~v~~~a~~~~vPV~lHl-D------   83 (286)
T COG0191          14 KENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGG---ADSLAHMVKALAEKYGVPVALHL-D------   83 (286)
T ss_pred             HHcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhch---HHHHHHHHHHHHHHCCCCEEEEC-C------
Confidence            344455443  37889999999999999999998877654332221   22334444432 22223332211 0      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                          .+          ...+++..++++|..-|.+=-|.-          +.||.+...++++++|+..|+.|.+.|-..
T Consensus        84 ----Hg----------~~~~~~~~ai~~GFsSvMiDgS~~----------~~eENi~~tkevv~~ah~~gvsVEaElG~~  139 (286)
T COG0191          84 ----HG----------ASFEDCKQAIRAGFSSVMIDGSHL----------PFEENIAITKEVVEFAHAYGVSVEAELGTL  139 (286)
T ss_pred             ----CC----------CCHHHHHHHHhcCCceEEecCCcC----------CHHHHHHHHHHHHHHHHHcCCcEEEEeccc
Confidence                11          023588899999999888754433          368899999999999999999999988886


Q ss_pred             ecCCCC--CCCCHHHHH---HHHHHHHHCCcCE--EEEcCCcCCCcH---HHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          292 VGCPVE--GAIPPSKVA---YVAKELHDMGCFE--ISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       292 ~g~p~~--~r~d~e~l~---~~a~~l~~~Gad~--I~L~DT~G~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      -|-+|.  ...+++.+.   +..+....-|+|.  +.|.-.=|.-.|   .-=.++++.+++..+ +||.+|.=.  |..
T Consensus       140 GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip  216 (286)
T COG0191         140 GGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIP  216 (286)
T ss_pred             cCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCC
Confidence            666662  223333332   2222333446774  445555555443   222456777777666 577777655  999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHH
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML  421 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~  421 (452)
                      ......|+..|+.-|+..--           .=.+.+..+-.++...  ...+|..+++.
T Consensus       217 ~~eI~~aI~~GV~KvNi~Td-----------~~~A~~~avr~~~~~~--~k~~DpR~~l~  263 (286)
T COG0191         217 DEEIREAIKLGVAKVNIDTD-----------LQLAFTAAVREYLAEN--PKEYDPRKYLK  263 (286)
T ss_pred             HHHHHHHHHhCceEEeeCcH-----------HHHHHHHHHHHHHHhC--cccCCHHHHHH
Confidence            99999999999986654211           1134444444444432  13577776664

>PRK13753 dihydropteroate synthase; Provisional

Probab=96.40  E-value=0.69  Score=46.64  Aligned_cols=199  Identities=17%  Similarity=0.183  Sum_probs=107.5

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHH----HHHhcc--CCceeEEe
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVME----AVRDLE--GARLPVLT  201 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~----~i~~~~--~~~l~~l~  201 (452)
                      |+.+|+ |-..--+..++.+..++-++.+.+.|.+.|++|.-++ |..-|  -+.++.++    .++.+.  +..+++  
T Consensus         7 IlNvTP-DSFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~--vs~eeE~~Rv~pvI~~l~~~~~~ISI--   81 (279)
T PRK13753          7 ILNLTE-DSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP--VSPADEIRRIAPLLDALSDQMHRVSI--   81 (279)
T ss_pred             EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc--CCHHHHHHHHHHHHHHHHhCCCcEEE--
Confidence            444444 3333333457889999999999999999999997654 43111  13333343    333332  222221  


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      ...                        ..+-+++|+++|++.|.=....++               +   ++.+.+.+.+
T Consensus        82 DT~------------------------~~~va~~al~aGadiINDVsg~~d---------------~---~~~~vva~~~  119 (279)
T PRK13753         82 DSF------------------------QPETQRYALKRGVGYLNDIQGFPD---------------P---ALYPDIAEAD  119 (279)
T ss_pred             ECC------------------------CHHHHHHHHHcCCCEEEeCCCCCc---------------h---HHHHHHHHcC
Confidence            111                        124678899999997664433222               1   2233444567


Q ss_pred             CcEEEEEEeeecCC----CCCCCCH--------HHHHHHHHHHHHCCc--CEEEEcCCcCCC---cHHHHHHHHHHHHHh
Q 012949          282 IPVRGYVSCVVGCP----VEGAIPP--------SKVAYVAKELHDMGC--FEISLGDTIGVG---TPGTVVPMLEAVMAV  344 (452)
Q Consensus       282 ~~V~~~l~~~~g~p----~~~r~d~--------e~l~~~a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~li~~l~~~  344 (452)
                      ..+.  |++.-|.+    .....+.        +++.+-++.+.++|+  +.|.|==-.|..   ++++-.++++.+.+-
T Consensus       120 ~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~~l  197 (279)
T PRK13753        120 CRLV--VMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQKL  197 (279)
T ss_pred             CCEE--EEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHHHH
Confidence            6654  66653311    1111111        244445667888998  578885567753   677877887775432


Q ss_pred             -----CCCc-----------cEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          345 -----VPVE-----------KLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       345 -----~p~~-----------~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                           +|..           .++...++-..-.+|.+..|+..||++|
T Consensus       198 ~~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~T~a~~~~a~~~Ga~iv  245 (279)
T PRK13753        198 KSALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYV  245 (279)
T ss_pred             HHhCCCceEEEccHhHHHHHHcCCChhhhhHhHHHHHHHHHHcCCCEE
Confidence                 2420           0111222222223455566677788765

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=96.40  E-value=0.061  Score=51.45  Aligned_cols=153  Identities=23%  Similarity=0.268  Sum_probs=96.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.|++.||+++-. |       ++.+.++.++ +.+++.+.+-+  .                   
T Consensus        17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGT--V-------------------   67 (196)
T PF01081_consen   17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGT--V-------------------   67 (196)
T ss_dssp             SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES----------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEe--c-------------------
Confidence            467888999999999999999999743 2       3455666555 34555444322  0                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|++.+.-.  .-+                  .+++++|+++|+.+..-+           .+|.
T Consensus        68 ----~~~e~a~~a~~aGA~FivSP--~~~------------------~~v~~~~~~~~i~~iPG~-----------~Tpt  112 (196)
T PF01081_consen   68 ----LTAEQAEAAIAAGAQFIVSP--GFD------------------PEVIEYAREYGIPYIPGV-----------MTPT  112 (196)
T ss_dssp             -----SHHHHHHHHHHT-SEEEES--S--------------------HHHHHHHHHHTSEEEEEE-----------SSHH
T ss_pred             ----cCHHHHHHHHHcCCCEEECC--CCC------------------HHHHHHHHHcCCcccCCc-----------CCHH
Confidence                12358999999999976522  111                  377899999999875322           3454


Q ss_pred             HHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          304 KVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      ++.    .+.++|++.+-+  ++..|-      ..+++.++.-+|++++-    -+=|.-..|.-.-+.+|+..
T Consensus       113 Ei~----~A~~~G~~~vK~FPA~~~GG------~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~  172 (196)
T PF01081_consen  113 EIM----QALEAGADIVKLFPAGALGG------PSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVA  172 (196)
T ss_dssp             HHH----HHHHTT-SEEEETTTTTTTH------HHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBS
T ss_pred             HHH----HHHHCCCCEEEEecchhcCc------HHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEE
Confidence            443    356799998887  233331      46788888878875543    34456667888889999763

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=96.39  E-value=0.36  Score=48.15  Aligned_cols=182  Identities=13%  Similarity=0.201  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      -+.+..++.++.+.+.|.+.|++|..+.+.     .+.+.+...++.+   .+..++.=+++                  
T Consensus        22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~------------------   78 (261)
T PRK07535         22 KDAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPN------------------   78 (261)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCC------------------
Confidence            367788889999999999999999764432     1123333444433   23333221221                  


Q ss_pred             hhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                              .+-+++|++.  |.+.|.=.....                ++..++++.+++.|..+.+-.+..-|-|....
T Consensus        79 --------~~v~eaaL~~~~G~~iINsIs~~~----------------~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~  134 (261)
T PRK07535         79 --------PAAIEAGLKVAKGPPLINSVSAEG----------------EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAE  134 (261)
T ss_pred             --------HHHHHHHHHhCCCCCEEEeCCCCC----------------ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHH
Confidence                    2366788887  877554222111                11234556778888877532221112111000


Q ss_pred             CCHHHHHHHHHHHHHCCc--CEEEEcCC-cCC--CcHH---HHHHHHHHHHHhCCCccEEEEeCC-CcCcHHH---H---
Q 012949          300 IPPSKVAYVAKELHDMGC--FEISLGDT-IGV--GTPG---TVVPMLEAVMAVVPVEKLAVHLHD-TYGQSLP---N---  364 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Ga--d~I~L~DT-~G~--~~P~---~v~~li~~l~~~~p~~~l~vH~Hn-d~GlA~A---N---  364 (452)
                      -..+++.+..+.+.++|+  +.|.+ |. +|.  ..+.   ++-+.++.+++.+|+.++-+=.+| .+|++--   |   
T Consensus       135 ~~~~~l~~~v~~a~~~GI~~~~Iil-DPgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~f  213 (261)
T PRK07535        135 DRLAVAKELVEKADEYGIPPEDIYI-DPLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAF  213 (261)
T ss_pred             HHHHHHHHHHHHHHHcCCCHhHEEE-eCCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHH
Confidence            013566677788889998  47766 54 331  1233   345566777777777677776666 4777422   1   


Q ss_pred             HHHHHHcCCC
Q 012949          365 ILISLQMGIS  374 (452)
Q Consensus       365 aLaAl~aGa~  374 (452)
                      ...|+++|.+
T Consensus       214 l~~a~~~Gl~  223 (261)
T PRK07535        214 LVMAMGAGMD  223 (261)
T ss_pred             HHHHHHcCCC
Confidence            2245566644

>PRK12677 xylose isomerase; Provisional

Probab=96.36  E-value=0.25  Score=51.91  Aligned_cols=140  Identities=19%  Similarity=0.164  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh---ccCCceeEEecchh--hhhhhhhhhhhccch
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLK--VILQRSILFQQCHAS  220 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~---~~~~~l~~l~~~~~--~~i~r~~~~~~~~~~  220 (452)
                      .-.-.+.++.+.++|++.||+.... .|-..+. ...+..++.+++   -.++++.+++++.-  ...+ --++......
T Consensus        30 ~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~-~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~-~g~lts~d~~  107 (384)
T PRK12677         30 PLDPVEAVHKLAELGAYGVTFHDDDLVPFGATD-AERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFK-DGAFTSNDRD  107 (384)
T ss_pred             CCCHHHHHHHHHHhCCCEEEecccccCCCCCCh-hhhHHHHHHHHHHHHHcCCeeEEEecCCCCCcccc-CCcCCCCCHH
Confidence            3345678899999999999996321 1110110 000112333332   24677777766531  0000 0011111221


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHH----HHHHHHHHHhCCCcEEEEEEe
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR----YRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~----~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                      +-+.......+.++.|.+.|++.|.++..--..  ......+.+++++.    +.++.++|++.|..|+..|..
T Consensus       108 ~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp  179 (384)
T PRK12677        108 VRRYALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP  179 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence            112112223467889999999999998552110  00112344555544    446778898877666655664

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=96.35  E-value=0.8  Score=44.60  Aligned_cols=177  Identities=15%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeEEe-cchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPVLT-PNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .+...-.+-++.|.+.|++.+=+-..- -.++|.+.-..+.++.+++.. +..+-+-. +..                  
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimD-g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~------------------   76 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMD-GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSN------------------   76 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEeccc-CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCC------------------
Confidence            444566677888899999977663211 123455543345677776543 44333311 111                  


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            ....++.+.++|++.|.+-..+.+               ..+.++++.+|+.|..+.+.+.        ..++.
T Consensus        77 ------p~~~i~~~~~~Gad~itvH~ea~~---------------~~~~~~l~~ik~~G~~~gval~--------p~t~~  127 (228)
T PTZ00170         77 ------PEKWVDDFAKAGASQFTFHIEATE---------------DDPKAVARKIREAGMKVGVAIK--------PKTPV  127 (228)
T ss_pred             ------HHHHHHHHHHcCCCEEEEeccCCc---------------hHHHHHHHHHHHCCCeEEEEEC--------CCCCH
Confidence                  013678889999999888654332               2245778899999988764443        12356


Q ss_pred             HHHHHHHHHHHHCCcCEE----EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          303 SKVAYVAKELHDMGCFEI----SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I----~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +.+.++++.   ..+|.|    .-+...|...-....+.++.+++..+...|.+    |-|.-..|.-.+.++||+.+
T Consensus       128 e~l~~~l~~---~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i  198 (228)
T PTZ00170        128 EVLFPLIDT---DLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI  198 (228)
T ss_pred             HHHHHHHcc---chhhhHHhhhcccCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            666555410   011211    01223344444455556777888766534444    67888889999999999976

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=96.34  E-value=0.19  Score=49.62  Aligned_cols=144  Identities=15%  Similarity=0.026  Sum_probs=77.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|++.|.+.......  ........+...+.+.++.++|++.|+.+.  +...   +.....+++...++++
T Consensus       103 ~~i~~a~~lG~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~~~~ll~  175 (283)
T PRK13209        103 KAIQLAQDLGIRVIQLAGYDVYY--EQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISKALGYAH  175 (283)
T ss_pred             HHHHHHHHcCCCEEEECCccccc--cccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHHHHHHHH
Confidence            46788889999988764211000  000011233446677888999999998764  3321   1122235566665655


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  389 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  389 (452)
                      .+   +-+.+.+ -|+.=...-.  .+....++. +.+--..+|.+|..+-           +-+.     ..+|     
T Consensus       176 ~v---~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~~-----------~~~~-----~~~G-----  228 (283)
T PRK13209        176 YL---NSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTKPG-----------VFKN-----VPFG-----  228 (283)
T ss_pred             Hh---CCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCCCC-----------CCce-----eCCC-----
Confidence            43   4444433 2653211100  012223332 3333478999997531           0111     1233     


Q ss_pred             CCCCCcccHHHHHHHHHcCCCC
Q 012949          390 KGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       390 ~graGNaalE~vv~~L~~~Gi~  411 (452)
                         .|..+.+.++..|+..|++
T Consensus       229 ---~G~id~~~i~~~L~~~gy~  247 (283)
T PRK13209        229 ---EGVVDFERCFKTLKQSGYC  247 (283)
T ss_pred             ---CCccCHHHHHHHHHHcCCC
Confidence               4789999999999987664

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=96.34  E-value=1.1  Score=43.78  Aligned_cols=208  Identities=11%  Similarity=0.060  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhh-hhhhhhhhhccchhhhhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVI-LQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~-i~r~~~~~~~~~~~i~~~~~  227 (452)
                      -.+.++.+.+.|++.||+..+.       -.+.+++.+.++. .+++++... |..... -.|.+.+.+...   ...+.
T Consensus        17 l~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   85 (258)
T PRK09997         17 FLARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGRE---EEFRD   85 (258)
T ss_pred             HHHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcH---HHHHH
Confidence            3556888999999999996421       1356677777654 355554321 111000 000000000000   00001


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEEe--eecCCCCCCCC
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSC--VVGCPVEGAIP  301 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~--~~g~p~~~r~d  301 (452)
                      ...+-++.|.+.|++.|.++.....      .+.+.    +...+.+.++.++|++.|+.+.  +..  .+..+...-.+
T Consensus        86 ~~~~~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~n~~~~~~~~~~~  157 (258)
T PRK09997         86 GVAAAIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLL--IEPINHFDIPGFHLTG  157 (258)
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCCCcCCCCCccCC
Confidence            1234667788899999988653211      11222    3445666778889999998754  321  01011111234


Q ss_pred             HHHHHHHHHHHHHCCcCEEE-EcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          302 PSKVAYVAKELHDMGCFEIS-LGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~-L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ++...++++.+   +.+.|. .-|+.=.... ..+.+.++.    +++-...+|.+|..+-                   
T Consensus       158 ~~~~~~ll~~v---~~~~v~l~~D~~h~~~~g~~~~~~~~~----~~~ri~~vHikD~~~~-------------------  211 (258)
T PRK09997        158 TRQALKLIDDV---GCCNLKIQYDIYHMQRMEGELTNTMTQ----WADKIGHLQIADNPHR-------------------  211 (258)
T ss_pred             HHHHHHHHHHh---CCCCEEEEeEHHHhhhcCCcHHHHHHH----hhCcccEEEeCCCCCC-------------------
Confidence            55555555443   444332 3365322211 122333333    3333357899985320                   


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                       .-+|        .|..+...++..|+..|++
T Consensus       212 -~~~G--------~G~id~~~i~~aL~~~Gy~  234 (258)
T PRK09997        212 -GEPG--------TGEINYDYLFKVIENSDYN  234 (258)
T ss_pred             -CCCC--------CCcCCHHHHHHHHHHhCCC
Confidence             0122        5889999999999998775

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.27  E-value=0.33  Score=46.62  Aligned_cols=196  Identities=13%  Similarity=0.082  Sum_probs=109.2

Q ss_pred             hhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCce
Q 012949          118 KFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARL  197 (452)
Q Consensus       118 ~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l  197 (452)
                      |+|..+|+-+.+.-.|+ -|.-.    -+.++..++++.+.+.|+..++++.+             +.++.+++..+  +
T Consensus         2 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~--i   61 (219)
T cd04729           2 KLLEQLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVD--L   61 (219)
T ss_pred             cHHHHhcCCeEEEccCC-CCCCc----CcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCC--C
Confidence            45666788788887766 33221    35678899999999999999997431             23455554323  2


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      +++.+..+       .|... .-.++    .+.+.++.++++|++.|-+-.+....         .+  -+.+.++++.+
T Consensus        62 Pil~~~~~-------~~~~~-~~~ig----~~~~~~~~a~~aGad~I~~~~~~~~~---------p~--~~~~~~~i~~~  118 (219)
T cd04729          62 PIIGLIKR-------DYPDS-EVYIT----PTIEEVDALAAAGADIIALDATDRPR---------PD--GETLAELIKRI  118 (219)
T ss_pred             CEEEEEec-------CCCCC-CceeC----CCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CcCHHHHHHHH
Confidence            33221111       00000 00000    01247899999999966654332110         00  01345677888


Q ss_pred             HhCC-CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEE
Q 012949          278 KVLS-IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       278 k~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      ++.| +.+.+  .         -.+++.    ++.+.++|++.|.+.  +..+..  ......++++.+++.+. +++-.
T Consensus       119 ~~~g~~~iiv--~---------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia  182 (219)
T cd04729         119 HEEYNCLLMA--D---------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA  182 (219)
T ss_pred             HHHhCCeEEE--E---------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE
Confidence            8888 54431  1         123443    366777899988542  221211  11123467788887663 34443


Q ss_pred             EeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          353 HLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       353 H~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                          ..|.. ..+...++++||+.|
T Consensus       183 ----~GGI~~~~~~~~~l~~GadgV  203 (219)
T cd04729         183 ----EGRINSPEQAAKALELGADAV  203 (219)
T ss_pred             ----eCCCCCHHHHHHHHHCCCCEE
Confidence                55663 578888899998854

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=96.22  E-value=0.2  Score=49.82  Aligned_cols=191  Identities=17%  Similarity=0.156  Sum_probs=112.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.++..++++...+.|++.+-+..    .+++.      ..+.+.  .++.+.+-+-.       ..+|.+....  +
T Consensus        35 ~~~~~d~~~~~~~a~~~~~~av~v~~----~~~~~------~~~~~~--~~~~l~~~i~~-------~~~~~~~~~~--~   93 (267)
T PRK07226         35 IDGLVDIRDTVNKVAEGGADAVLMHK----GLARH------GHRGYG--RDVGLIVHLSA-------STSLSPDPND--K   93 (267)
T ss_pred             CcCcCCHHHHHHHHHhcCCCEEEeCH----hHHhh------hccccC--CCCcEEEEEcC-------CCCCCCCCCc--c
Confidence            34677888899999999999998852    11111      001110  12221110000       0112111110  0


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .....++.|++.|++.|.+.......        ..++.++.+.++.+.+++.|+++.+ +.+..|...++..+++
T Consensus        94 ----~~~~~ve~A~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~v-i~~~~g~~~e~~~~~~  160 (267)
T PRK07226         94 ----VLVGTVEEAIKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLA-MMYPRGPGIKNEYDPE  160 (267)
T ss_pred             ----eeeecHHHHHHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEE-EEecCCCccCCCccHH
Confidence                11236889999999988877543321        1346788888999999999998764 3333333233345678


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCC--CcCcHHHHHHHHHHcCCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHD--TYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hn--d~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+...++.+.++|||.|-..= .|  .+    ++++.+.+.  .|.  +..=+-+  |+-.++++.-.++++||+.+.
T Consensus       161 ~i~~a~~~a~e~GAD~vKt~~-~~--~~----~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis  229 (267)
T PRK07226        161 VVAHAARVAAELGADIVKTNY-TG--DP----ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGVA  229 (267)
T ss_pred             HHHHHHHHHHHHCCCEEeeCC-CC--CH----HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEEe
Confidence            888888999999999997651 11  23    334444432  343  2222333  667789999999999999443

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=96.21  E-value=1.1  Score=45.32  Aligned_cols=202  Identities=15%  Similarity=0.184  Sum_probs=128.6

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhh
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~  212 (452)
                      .+.+..+.  .++.+....+++.-.+.+-+.|--.++..-++.+    .+.+...++. ....++++.+.. .       
T Consensus        15 ~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHl-D-------   82 (281)
T PRK06806         15 QENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHF-D-------   82 (281)
T ss_pred             HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEEC-C-------
Confidence            34444443  4889999999999999999987766543323222    2222333332 122333332211 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                       +  +          ...+.++.|++.|++.|.+=.+.          .+.++.++..++++++|++.|..|.+.+-.. 
T Consensus        83 -H--~----------~~~e~i~~Al~~G~tsVm~d~s~----------~~~~eni~~t~~v~~~a~~~gv~veaE~ghl-  138 (281)
T PRK06806         83 -H--G----------MTFEKIKEALEIGFTSVMFDGSH----------LPLEENIQKTKEIVELAKQYGATVEAEIGRV-  138 (281)
T ss_pred             -C--C----------CCHHHHHHHHHcCCCEEEEcCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeE-
Confidence             1  1          02357889999999998875442          3567889999999999999999998777663 


Q ss_pred             cCCCC-----C--CCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          293 GCPVE-----G--AIPPSKVAYVAKELHDMGCFEISL--GDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       293 g~p~~-----~--r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      |..+.     +  .++++.+.++++   +.|+|.+.+  .=.-|.-  .|.-=.++++.+++.++ +||..|+  .-|.-
T Consensus       139 G~~d~~~~~~g~s~t~~eea~~f~~---~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~  212 (281)
T PRK06806        139 GGSEDGSEDIEMLLTSTTEAKRFAE---ETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGIS  212 (281)
T ss_pred             CCccCCcccccceeCCHHHHHHHHH---hhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCC
Confidence            42221     1  245655554443   468998888  4444432  22233456777777765 4676665  45888


Q ss_pred             HHHHHHHHHcCCCEEeec
Q 012949          362 LPNILISLQMGISTVDCS  379 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~S  379 (452)
                      ..|...++++|++.|...
T Consensus       213 ~e~~~~~i~~G~~kinv~  230 (281)
T PRK06806        213 PEDFKKCIQHGIRKINVA  230 (281)
T ss_pred             HHHHHHHHHcCCcEEEEh
Confidence            899999999999977654

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=96.18  E-value=0.56  Score=49.05  Aligned_cols=166  Identities=17%  Similarity=0.114  Sum_probs=100.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++.+.+.|++.|-++..     .|.+. |..++++.+++.++.....++.|-- ++              
T Consensus        89 ~ls~eei~~~i~~~~~~Gv~~I~~tGG-----EPllr~dl~eli~~l~~~~gi~~i~itTNG~-lL--------------  148 (373)
T PLN02951         89 LLSQDEIVRLAGLFVAAGVDKIRLTGG-----EPTLRKDIEDICLQLSSLKGLKTLAMTTNGI-TL--------------  148 (373)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEECC-----CCcchhhHHHHHHHHHhcCCCceEEEeeCcc-hH--------------
Confidence            489999999999999999999888641     24332 4456666666655554223333221 00              


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r  299 (452)
                             .+.++..+++|++.|.|.+-.. + .|.+..-+..    ++.+.+.++.|++.|+ .|.+++...      ..
T Consensus       149 -------~~~~~~L~~aGld~VnISLDsl~~e~~~~itr~~~----~~~vl~~I~~a~~~G~~~vkin~vv~------~g  211 (373)
T PLN02951        149 -------SRKLPRLKEAGLTSLNISLDTLVPAKFEFLTRRKG----HDRVLESIDTAIELGYNPVKVNCVVM------RG  211 (373)
T ss_pred             -------HHHHHHHHhCCCCeEEEeeccCCHHHHHHHhcCCC----HHHHHHHHHHHHHcCCCcEEEEEEec------CC
Confidence                   1356778889999999986433 2 2222111122    4666677788899997 455433321      12


Q ss_pred             CCHHHHHHHHHHHHHCCcCE--EEEcCCcCCCc----HHHHHHHHHHHHHhCC
Q 012949          300 IPPSKVAYVAKELHDMGCFE--ISLGDTIGVGT----PGTVVPMLEAVMAVVP  346 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~--I~L~DT~G~~~----P~~v~~li~~l~~~~p  346 (452)
                      .+.+.+.++++.+.+.|+..  |.+--.-|...    .....++++.+.+.+|
T Consensus       212 ~N~~Ei~~li~~a~~~gi~vr~ie~mP~~~~~~~~~~~~~~~ei~~~l~~~~~  264 (373)
T PLN02951        212 FNDDEICDFVELTRDKPINVRFIEFMPFDGNVWNVKKLVPYAEMMDRIEQRFP  264 (373)
T ss_pred             CCHHHHHHHHHHHHhCCCeEEEEEcccCCCCccccccCCCHHHHHHHHHHhcC
Confidence            35678889999998888653  34433333211    1125677777777766

>TIGR00510 lipA lipoate synthase

Probab=96.17  E-value=0.2  Score=51.02  Aligned_cols=145  Identities=19%  Similarity=0.259  Sum_probs=95.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      +.++.++.++.+.+.|+++|-+++-..+.+ +.  .....++++.|++ .+++++.+++|...                 
T Consensus        92 ~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~-----------------  153 (302)
T TIGR00510        92 DPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFR-----------------  153 (302)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCccc-----------------
Confidence            568889999999999999998886433221 11  1123455555554 35666666666432                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r  299 (452)
                           ...+.++..+++|.+.+....-.++.. .+.+-+.+.++.+    ++++.+++.  |+.+...++.-+|   +  
T Consensus       154 -----g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~~t~e~~L----e~l~~ak~~~pgi~~~TgiIVGlG---E--  219 (302)
T TIGR00510       154 -----GNIAALDILLDAPPDVYNHNLETVERLTPFVRPGATYRWSL----KLLERAKEYLPNLPTKSGIMVGLG---E--  219 (302)
T ss_pred             -----CCHHHHHHHHHcCchhhcccccchHHHHHHhCCCCCHHHHH----HHHHHHHHhCCCCeecceEEEECC---C--
Confidence                 012467888899999777765334432 2222344555555    566888887  7888777775442   2  


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEc
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLG  323 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~  323 (452)
                       +.+++.+..+.+.+.|++.+.+.
T Consensus       220 -Teee~~etl~~Lrelg~d~v~ig  242 (302)
T TIGR00510       220 -TNEEIKQTLKDLRDHGVTMVTLG  242 (302)
T ss_pred             -CHHHHHHHHHHHHhcCCCEEEee
Confidence             46888899999999999998874

The family shows strong sequence conservation.

>TIGR00284 dihydropteroate synthase-related protein

Probab=96.17  E-value=0.88  Score=49.49  Aligned_cols=174  Identities=18%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc---CCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~---~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +..++-+..+.+.|.+.|++|..+..   |   +++.+...++.+.   +..+++=+.+                     
T Consensus       165 ~~i~~~A~~~~~~GADIIDIG~~st~---p---~~~~v~~~V~~l~~~~~~pISIDT~~---------------------  217 (499)
T TIGR00284       165 DGIEGLAARMERDGADMVALGTGSFD---D---DPDVVKEKVKTALDALDSPVIADTPT---------------------  217 (499)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCC---C---cHHHHHHHHHHHHhhCCCcEEEeCCC---------------------
Confidence            77888899999999999999975431   2   3344555555432   3333321222                     


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                           .+.+++|+++|++.|.   ++|.               .++.++...+++.|..+.  ++.     .......++
T Consensus       218 -----~~v~eaAL~aGAdiIN---sVs~---------------~~~d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~  267 (499)
T TIGR00284       218 -----LDELYEALKAGASGVI---MPDV---------------ENAVELASEKKLPEDAFV--VVP-----GNQPTNYEE  267 (499)
T ss_pred             -----HHHHHHHHHcCCCEEE---ECCc---------------cchhHHHHHHHHcCCeEE--EEc-----CCCCchHHH
Confidence                 2478899999999776   3332               112244566777787664  332     111122378


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHH---HhCCCccEEEEeC--------CCcCcHHHHHHHHHHcCC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVM---AVVPVEKLAVHLH--------DTYGQSLPNILISLQMGI  373 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~---~~~p~~~l~vH~H--------nd~GlA~ANaLaAl~aGa  373 (452)
                      +.+.++.+.++|.+.|.+ |..=-..+..+.+-+..++   +.++ .|+-+=.-        +..|.-.+-+..|++.||
T Consensus       268 l~~~ie~a~~~Gi~~IIl-DPglg~~~~~l~~sL~~l~~~r~~~~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga  345 (499)
T TIGR00284       268 LAKAVKKLRTSGYSKVAA-DPSLSPPLLGLLESIIRFRRASRLLN-VPLVFGAANVTELVDADSHGVNALLAAIALEAGA  345 (499)
T ss_pred             HHHHHHHHHHCCCCcEEE-eCCCCcchHHHHHHHHHHHHHHHhcC-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCC
Confidence            888999999999976555 6422223344444444554   4555 23311111        344555666677889999


Q ss_pred             CEEeecc
Q 012949          374 STVDCSV  380 (452)
Q Consensus       374 ~~VD~Sv  380 (452)
                      ++|=++=
T Consensus       346 ~ilrvhd  352 (499)
T TIGR00284       346 SILYVVE  352 (499)
T ss_pred             CEEEEcC
Confidence            9775543

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]

Probab=96.11  E-value=0.8  Score=47.07  Aligned_cols=147  Identities=19%  Similarity=0.136  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++...+.||+-|-++-.     .|-+ .|..++.+.+++. +..-.+++.|-- ++              
T Consensus        42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGG-----EPllR~dl~eIi~~l~~~-~~~~islTTNG~-~L--------------  100 (322)
T COG2896          42 LLSLEEIRRLVRAFAELGVEKVRLTGG-----EPLLRKDLDEIIARLARL-GIRDLSLTTNGV-LL--------------  100 (322)
T ss_pred             cCCHHHHHHHHHHHHHcCcceEEEeCC-----CchhhcCHHHHHHHHhhc-ccceEEEecchh-hH--------------
Confidence            589999999999999999999999753     3545 3666667766654 333344554431 11              


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d  301 (452)
                             .+..+..+++|+++|+|..-.=|.....++  |....++++.+-+++|.+.|+. |-.+.-..     - -.+
T Consensus       101 -------~~~a~~Lk~AGl~rVNVSLDsld~e~f~~I--T~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~-----k-gvN  165 (322)
T COG2896         101 -------ARRAADLKEAGLDRVNVSLDSLDPEKFRKI--TGRDRLDRVLEGIDAAVEAGLTPVKLNTVLM-----K-GVN  165 (322)
T ss_pred             -------HHHHHHHHHcCCcEEEeecccCCHHHHHHH--hCCCcHHHHHHHHHHHHHcCCCceEEEEEEe-----c-CCC
Confidence                   125677889999999998644333222222  1223377778888999999996 76443321     1 256


Q ss_pred             HHHHHHHHHHHHHCCcC--EEEEcCCc
Q 012949          302 PSKVAYVAKELHDMGCF--EISLGDTI  326 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad--~I~L~DT~  326 (452)
                      .+++..+++.+.+-|+.  -|-+-|+-
T Consensus       166 d~ei~~l~e~~~~~~~~lrfIE~m~~g  192 (322)
T COG2896         166 DDEIEDLLEFAKERGAQLRFIELMPLG  192 (322)
T ss_pred             HHHHHHHHHHHhhcCCceEEEEEeecC
Confidence            78999999999999874  66666655

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]

Probab=96.09  E-value=0.43  Score=49.98  Aligned_cols=240  Identities=13%  Similarity=0.083  Sum_probs=142.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          141 EKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       141 ~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .+..++.++..+.++.+.+.|+..|-+-+...|...+.  -.++.++.+++ .+++.+-++.+.--   ..   ..+.. 
T Consensus        86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei---~~---~~~~~-  156 (370)
T COG1060          86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEI---LF---LAREG-  156 (370)
T ss_pred             cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHh---HH---HHhcc-
Confidence            34579999999999999999999999988777753322  23556666664 34544444443210   00   00000 


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhh------hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKS------NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~------~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                            .....+.++..+++|.+.+-.+-  .+++...      ..+++.++=|    ++.+.|.++|++-.+.+++-. 
T Consensus       157 ------~~s~~E~l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~wl----e~~~~Ah~lGI~~tatml~Gh-  223 (370)
T COG1060         157 ------GLSYEEVLKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEWL----EIHERAHRLGIPTTATMLLGH-  223 (370)
T ss_pred             ------CCCHHHHHHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHHH----HHHHHHHHcCCCccceeEEEe-
Confidence                  01123458888999998665442  2222211      2355555444    566999999999887777532 


Q ss_pred             CCCCCCCCHHHHHHHH---HHHH-HCC-cCEEEE-----cCC------cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          294 CPVEGAIPPSKVAYVA---KELH-DMG-CFEISL-----GDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a---~~l~-~~G-ad~I~L-----~DT------~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                        .++   +++...-.   +.+. ++| ...|.+     ..+      ..-.++.++...|+..|-.++. .+...-=-.
T Consensus       224 --~E~---~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w  297 (370)
T COG1060         224 --VET---REDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASW  297 (370)
T ss_pred             --cCC---HHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcc
Confidence              222   44433322   2232 334 333322     122      1224556666666666555553 233333445


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC-----cccHHHHHHHHHcCCCCC
Q 012949          358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG-----NVATEDVVYMLSGLGVET  412 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG-----NaalE~vv~~L~~~Gi~t  412 (452)
                      +-+++.-+.+|+.+||+-+.+|+..  |+- .+ .+|     +...|+++.+++..|..+
T Consensus       298 ~~~g~~~~~~~l~~GanD~ggt~~~--E~v-~~-~a~~~~~~~~~~eel~~~i~~aG~~p  353 (370)
T COG1060         298 LRDGVILAQAALLSGANDLGGTGYE--EKV-NP-AAGAFSGDWRSVEELAALIKEAGRIP  353 (370)
T ss_pred             cccchHHHHHHHHhCcccCcCCCcc--ccc-cc-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence            6677777899999999988887776  521 11 244     788999999999888754

>PRK06267 hypothetical protein; Provisional

Probab=96.03  E-value=1.5  Score=45.46  Aligned_cols=214  Identities=10%  Similarity=0.015  Sum_probs=119.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.++.++-++.+.+.|++.+=+......    ...+.+++.+.++.+.+..+. +..+..                  
T Consensus        62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~~~-~s~G~~------------------  118 (350)
T PRK06267         62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCKQY-LNVGII------------------  118 (350)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCceE-eecccC------------------
Confidence            468999999999999999985433221111    011234555555554432211 112211                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEE-ecCCh-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIF-ASASE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~-~s~Sd-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              +.+.+...+.+.|... -..++ .+.+...+.+.++.+    +.++.+++.|+++...+.  +|. .+   +
T Consensus       119 --------d~~~~~~~~l~Gv~g~~ET~~~~~~~~i~~~~s~ed~~----~~l~~ak~aGi~v~~g~I--iGl-gE---t  180 (350)
T PRK06267        119 --------DFLNINLNEIEGVVGAVETVNPKLHREICPGKPLDKIK----EMLLKAKDLGLKTGITII--LGL-GE---T  180 (350)
T ss_pred             --------CHHHHhhccccCceeeeecCCHHHHHhhCCCCCHHHHH----HHHHHHHHcCCeeeeeEE--EeC-CC---C
Confidence                    1222222222222222 23333 343333355655555    566899999999875555  442 22   3


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          302 PSKVAYVAKELHDMGCFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      .+.+.+.++.+.+++++.+.+      ++|    .-..+|.++.+++..+|-.+|...|-.=.--+.+..++   .++.+
T Consensus       181 ~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~a  257 (350)
T PRK06267        181 EDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMS  257 (350)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhc
Confidence            678888899999999886542      344    23467789999999999888975441111001111111   25669


Q ss_pred             CCCEE--eecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          372 GISTV--DCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       372 Ga~~V--D~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      ||+.+  =-.+++++-      ..|+..-+++-..=+.
T Consensus       258 GaN~i~~~p~~g~ylt------~~g~~~~~~~~~~~~~  289 (350)
T PRK06267        258 GSNVITKFPLFSMYGT------KEGKRVENEIRWTGRE  289 (350)
T ss_pred             CcceeeccchhccCcc------cCCCCHHHHHHHhhhh
Confidence            99877  223444455      6677777777554343

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=96.01  E-value=0.43  Score=46.99  Aligned_cols=195  Identities=16%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             HHHHHHCCCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++.+.++|++.+=.+++.  .....|-  +-+.+++++.++.+.. +.+++++..-       .||+..+.++.+     
T Consensus        22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d-------~GyG~~~~~v~~-----   89 (238)
T PF13714_consen   22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDAD-------TGYGNDPENVAR-----   89 (238)
T ss_dssp             HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-T-------TTSSSSHHHHHH-----
T ss_pred             HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcc-------cccCchhHHHHH-----
Confidence            567788899999887541  1112222  2356788888887643 4566655332       367765555443     


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                         .++...++|+.-|+|-+.-.. | ..+.=.+.++..++++.+.+..++.++-+.+-. .++..   .....+...+=
T Consensus        90 ---tv~~~~~aG~agi~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ART-Da~~~---~~~~~deaI~R  160 (238)
T PF13714_consen   90 ---TVRELERAGAAGINIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIART-DAFLR---AEEGLDEAIER  160 (238)
T ss_dssp             ---HHHHHHHCT-SEEEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEE-CHHCH---HHHHHHHHHHH
T ss_pred             ---HHHHHHHcCCcEEEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEec-ccccc---CCCCHHHHHHH
Confidence               788889999999999988111 2 222223899999999888888888885443111 00100   01123555556


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ++...++|||.|.+.   |..+++++.++.+.+    + .|+-+..+  .+.  -+.-.--+.|+++|-....
T Consensus       161 ~~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~~~~  221 (238)
T PF13714_consen  161 AKAYAEAGADMIFIP---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSYGNS  221 (238)
T ss_dssp             HHHHHHTT-SEEEET---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEETSH
T ss_pred             HHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEEcHH
Confidence            677788999999874   446677776666665    2 35666664  333  4444455789888765443

...

>PRK08005 epimerase; Validated

Probab=95.94  E-value=0.78  Score=44.38  Aligned_cols=174  Identities=11%  Similarity=0.039  Sum_probs=108.3

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      +...-.+-++.|.++|++.+=+-..- -.++|.+.=..++++.+++.++..+-+.  +-+-                   
T Consensus        11 d~~~l~~el~~l~~~g~d~lHiDvMD-G~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P-------------------   70 (210)
T PRK08005         11 DPLRYAEALTALHDAPLGSLHLDIED-TSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSP-------------------   70 (210)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeccC-CCcCCccccCHHHHHHHHhcCCCCeEEEeccCCH-------------------
Confidence            34455667788899999976663110 0134544322456777776544444432  2111                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                            ...++..+++|++.|.+-.-+                .....++++++|++|.++...|.     |.   ++.+
T Consensus        71 ------~~~i~~~~~~gad~It~H~Ea----------------~~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~  120 (210)
T PRK08005         71 ------QRWLPWLAAIRPGWIFIHAES----------------VQNPSEILADIRAIGAKAGLALN-----PA---TPLL  120 (210)
T ss_pred             ------HHHHHHHHHhCCCEEEEcccC----------------ccCHHHHHHHHHHcCCcEEEEEC-----CC---CCHH
Confidence                  136788889999988776532                23345778999999999875443     22   4667


Q ss_pred             HHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          304 KVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .+.+++..     +|.|-+    +.-.|..--..+.+-|+.+++..+...|++    |=|.-..|+-...++||+.+=+
T Consensus       121 ~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~V~  190 (210)
T PRK08005        121 PYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHLVI  190 (210)
T ss_pred             HHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence            77766653     333322    344455555667777888887666433444    6788889999999999996633

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=95.93  E-value=0.32  Score=51.31  Aligned_cols=170  Identities=17%  Similarity=0.079  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|...++..+|+|.+--..      .--++++.+++. ++..+  ++.- +        +.+.+.    
T Consensus       182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~------~G~~iVk~Lr~~~~~~~I--~~DL-K--------~~Di~~----  240 (391)
T PRK13307        182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKK------FGLEVISKIREVRPDAFI--VADL-K--------TLDTGN----  240 (391)
T ss_pred             CCHHHHHHHHHhcccccceEEEECHHHHHH------hCHHHHHHHHHhCCCCeE--EEEe-c--------ccChhh----
Confidence            577888999999988878899999642111      112455666654 33322  2211 1        001110    


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                             --++.+.++|++.+.+.....+               +.+.++++.+|+.|+++.+.++.    |   ..+.+
T Consensus       241 -------~vv~~~a~aGAD~vTVH~ea~~---------------~ti~~ai~~akk~GikvgVD~ln----p---~tp~e  291 (391)
T PRK13307        241 -------LEARMAADATADAVVISGLAPI---------------STIEKAIHEAQKTGIYSILDMLN----V---EDPVK  291 (391)
T ss_pred             -------HHHHHHHhcCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCEEEEEEcC----C---CCHHH
Confidence                   0267788999999988765443               34567889999999887642221    1   11223


Q ss_pred             HHHHHHHHHHHCCcCEEEEc---CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLG---DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~---DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+    +.+ ..++|.|.+-   |.-+.  +. .-+.++.+++..++.++.+    +-|....|.-.++++||+++
T Consensus       292 ~i----~~l-~~~vD~Vllht~vdp~~~--~~-~~~kI~~ikk~~~~~~I~V----dGGI~~eti~~l~~aGADiv  355 (391)
T PRK13307        292 LL----ESL-KVKPDVVELHRGIDEEGT--EH-AWGNIKEIKKAGGKILVAV----AGGVRVENVEEALKAGADIL  355 (391)
T ss_pred             HH----HHh-hCCCCEEEEccccCCCcc--cc-hHHHHHHHHHhCCCCcEEE----ECCcCHHHHHHHHHcCCCEE
Confidence            33    333 4578887665   33233  11 2246677776544444555    34788888888999999965

>PRK15452 putative protease; Provisional

Probab=95.91  E-value=0.11  Score=55.68  Aligned_cols=98  Identities=14%  Similarity=0.013  Sum_probs=64.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.+++|+++|+|.|.+-...-.... ..-+.+.    +.+.+++++|++.|.+|.+++-..     ....+.+.+.++.+
T Consensus        14 e~l~aAi~~GADaVY~G~~~~~~R~-~~~~f~~----edl~eav~~ah~~g~kvyvt~n~i-----~~e~el~~~~~~l~   83 (443)
T PRK15452         14 KNMRYAFAYGADAVYAGQPRYSLRV-RNNEFNH----ENLALGINEAHALGKKFYVVVNIA-----PHNAKLKTFIRDLE   83 (443)
T ss_pred             HHHHHHHHCCCCEEEECCCccchhh-hccCCCH----HHHHHHHHHHHHcCCEEEEEecCc-----CCHHHHHHHHHHHH
Confidence            5889999999999888443111110 0112333    457788999999999886443321     11123456777888


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCc
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE  348 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~  348 (452)
                      .+.++|+|.|.+.|. |         ++..+++..|+.
T Consensus        84 ~l~~~gvDgvIV~d~-G---------~l~~~ke~~p~l  111 (443)
T PRK15452         84 PVIAMKPDALIMSDP-G---------LIMMVREHFPEM  111 (443)
T ss_pred             HHHhCCCCEEEEcCH-H---------HHHHHHHhCCCC
Confidence            899999999999992 2         356667777764

>PRK05481 lipoyl synthase; Provisional

Probab=95.90  E-value=0.42  Score=48.24  Aligned_cols=146  Identities=17%  Similarity=0.208  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccc--cCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQ--LADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~--~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.++.++.++.+.+.|++.|-+.+..... .|.  .....++++.+++ .+++++..+.|...               
T Consensus        79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d-~~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~---------------  142 (289)
T PRK05481         79 PLDPDEPERVAEAVARMGLKYVVITSVDRDD-LPDGGAQHFAETIRAIRELNPGTTIEVLIPDFR---------------  142 (289)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCC-cccccHHHHHHHHHHHHhhCCCcEEEEEccCCC---------------
Confidence            3799999999999999999999987543211 110  1123455666655 45566655555321               


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~  297 (452)
                             ...+.+..++++|.+.+....-.++...+ -+-+.|.++    ..++++.+++.  |+.+...++.-|   -+
T Consensus       143 -------~~~e~L~~l~~ag~~i~~~~~ets~~vlk~m~r~~t~e~----~le~i~~ar~~~pgi~~~t~~IvGf---GE  208 (289)
T PRK05481        143 -------GRMDALLTVLDARPDVFNHNLETVPRLYKRVRPGADYER----SLELLKRAKELHPGIPTKSGLMVGL---GE  208 (289)
T ss_pred             -------CCHHHHHHHHhcCcceeeccccChHHHHHHhCCCCCHHH----HHHHHHHHHHhCCCCeEeeeeEEEC---CC
Confidence                   01247788889999888876655543222 222445554    44677999999  999988787533   22


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                         +.+.+.+..+.+.+.+.+.+.+
T Consensus       209 ---T~ed~~~tl~~lrel~~d~v~i  230 (289)
T PRK05481        209 ---TDEEVLEVMDDLRAAGVDILTI  230 (289)
T ss_pred             ---CHHHHHHHHHHHHhcCCCEEEE
Confidence               4688888999999999988776

>PRK09989 hypothetical protein; Provisional

Probab=95.89  E-value=0.49  Score=46.28  Aligned_cols=210  Identities=9%  Similarity=-0.016  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhh--hccchhhhhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQ--QCHASVISSNLW  227 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~--~~~~~~i~~~~~  227 (452)
                      -.+.++.+.++|++.||+..+..       .+.+++.+.++. .+++++++......+ . .-.|.  ..+... ...+.
T Consensus        17 l~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~-~-~~~~~~~~~~~~~-~~~~~   85 (258)
T PRK09989         17 FIERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDI-N-AGEWGLSALPGRE-HEARA   85 (258)
T ss_pred             HHHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCcc-C-CCCCcccCCCccH-HHHHH
Confidence            34678889999999999964211       245566666654 355555544221100 0 00000  000000 00000


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                      ...+.++.|.+.|++.|+++.+..+      -+.+    .+...+.+.++.++|++.|+.+...-......+...-.+.+
T Consensus        86 ~l~~~i~~A~~lg~~~v~v~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~  159 (258)
T PRK09989         86 DIDLALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQY  159 (258)
T ss_pred             HHHHHHHHHHHhCcCEEEECccCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHH
Confidence            1124667778899999987654321      0112    23466777788899999998764211100000100011333


Q ss_pred             HHHHHHHHHHHCCcCEE-EEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          304 KVAYVAKELHDMGCFEI-SLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I-~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ...+++   .+.+.+.+ ..-|+.-...+. ...++++....    .-..+|.+|..+                  ... 
T Consensus       160 ~~~~ll---~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~----ri~hvHi~D~~~------------------~~~-  213 (258)
T PRK09989        160 QALAIV---EEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAG----KYAHVQIAGLPD------------------RHE-  213 (258)
T ss_pred             HHHHHH---HHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhh----hEEEEEECCCCC------------------CCC-
Confidence            344444   44454433 445876554432 23344443333    235788886221                  111 


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                              + +.|..+...++.+|+..|++
T Consensus       214 --------p-G~G~id~~~i~~al~~~Gy~  234 (258)
T PRK09989        214 --------P-DDGEINYPWLFRLFDEVGYQ  234 (258)
T ss_pred             --------C-CCCCcCHHHHHHHHHHcCCC
Confidence                    2 25779999999999998775

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=95.87  E-value=0.69  Score=44.92  Aligned_cols=166  Identities=19%  Similarity=0.173  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhc-cCCceeEE--ecchhhhhhhhhhhhhccch
Q 012949          148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l--~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..-.+-++.|.++|++.+=+    |.|+     |.+.=..++++.+++. ++..+-+.  +.+.                
T Consensus        12 ~~l~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p----------------   70 (220)
T PRK08883         12 ARLGEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPV----------------   70 (220)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCH----------------
Confidence            34456677888899997766    4443     5443234567777765 45444432  2111                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                               ...++..+++|++.|.+-.-+                ...+.++++++|++|+++...|.     |.   +
T Consensus        71 ---------~~~i~~~~~~gad~i~~H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln-----P~---T  117 (220)
T PRK08883         71 ---------DRIIPDFAKAGASMITFHVEA----------------SEHVDRTLQLIKEHGCQAGVVLN-----PA---T  117 (220)
T ss_pred             ---------HHHHHHHHHhCCCEEEEcccC----------------cccHHHHHHHHHHcCCcEEEEeC-----CC---C
Confidence                     136788889999988876532                23455778999999999874443     22   4


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +.+.+.+++..     +|.|-+    +.+.|...-....+.++.+++..+    ..+|++    |-|.-..|.-..+++|
T Consensus       118 p~~~i~~~l~~-----~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aG  188 (220)
T PRK08883        118 PLHHLEYIMDK-----VDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAG  188 (220)
T ss_pred             CHHHHHHHHHh-----CCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcC
Confidence            56777766653     343333    333443333344445666666543    234555    8899999999999999


Q ss_pred             CCEE
Q 012949          373 ISTV  376 (452)
Q Consensus       373 a~~V  376 (452)
                      |+.+
T Consensus       189 Ad~v  192 (220)
T PRK08883        189 ADMF  192 (220)
T ss_pred             CCEE
Confidence            9977

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.85  E-value=0.56  Score=45.76  Aligned_cols=153  Identities=22%  Similarity=0.270  Sum_probs=98.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-----hccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-----DLEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-----~~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      -+.++-.++++.|.+.|++.||+++-. |       ++.+.++.++     +.+++.+.+-+                  
T Consensus        24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGT------------------   77 (222)
T PRK07114         24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGS------------------   77 (222)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEe------------------
Confidence            478999999999999999999999732 2       2344555553     12333333221                  


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                       +      .+.++++.|+++|++.+.-.. .+                   .+++++++++|+.+.           -+-
T Consensus        78 -V------l~~e~a~~a~~aGA~FiVsP~-~~-------------------~~v~~~~~~~~i~~i-----------PG~  119 (222)
T PRK07114         78 -I------VDAATAALYIQLGANFIVTPL-FN-------------------PDIAKVCNRRKVPYS-----------PGC  119 (222)
T ss_pred             -C------cCHHHHHHHHHcCCCEEECCC-CC-------------------HHHHHHHHHcCCCEe-----------CCC
Confidence             0      124589999999999764221 11                   367899999998764           133


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH--HHHHHHHHcCCCE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL--PNILISLQMGIST  375 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~--ANaLaAl~aGa~~  375 (452)
                      .+|.++.    .+.++|++.|-|  +++.|   |    .+++.|+.-+|++++-    -+=|...  .|.-.=+.+|+..
T Consensus       120 ~TpsEi~----~A~~~Ga~~vKlFPA~~~G---~----~~ikal~~p~p~i~~~----ptGGV~~~~~n~~~yl~aGa~a  184 (222)
T PRK07114        120 GSLSEIG----YAEELGCEIVKLFPGSVYG---P----GFVKAIKGPMPWTKIM----PTGGVEPTEENLKKWFGAGVTC  184 (222)
T ss_pred             CCHHHHH----HHHHCCCCEEEECcccccC---H----HHHHHHhccCCCCeEE----eCCCCCcchhcHHHHHhCCCEE
Confidence            4565544    456789998777  34333   3    4677777777864432    3456655  5777777889765


Q ss_pred             E
Q 012949          376 V  376 (452)
Q Consensus       376 V  376 (452)
                      |
T Consensus       185 v  185 (222)
T PRK07114        185 V  185 (222)
T ss_pred             E
Confidence            4

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=95.80  E-value=0.83  Score=46.58  Aligned_cols=167  Identities=17%  Similarity=0.101  Sum_probs=101.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.++..++++.+.+.|+..|-++.. -    |-+ .|..++++.+++..+. .+.+.+.+..                
T Consensus        42 ~ls~eei~~~i~~~~~~gv~~V~ltGG-E----Pll~~~l~~li~~i~~~~gi~~v~itTNG~l----------------  100 (334)
T TIGR02666        42 LLTFEEIERLVRAFVGLGVRKVRLTGG-E----PLLRKDLVELVARLAALPGIEDIALTTNGLL----------------  100 (334)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECc-c----ccccCCHHHHHHHHHhcCCCCeEEEEeCchh----------------
Confidence            589999999999999999998888642 2    222 2556667766665555 4443332211                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGA  299 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r  299 (452)
                             ..+.++...++|++.|.|.+.. ++...+.-.+.  ...++++.+.++.+++.|+. +..++...      ..
T Consensus       101 -------l~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~--~~~~~~vl~~i~~l~~~G~~~v~in~vv~------~g  165 (334)
T TIGR02666       101 -------LARHAKDLKEAGLKRVNVSLDSLDPERFAKITRR--GGRLEQVLAGIDAALAAGLEPVKLNTVVM------RG  165 (334)
T ss_pred             -------HHHHHHHHHHcCCCeEEEecccCCHHHhheeCCC--CCCHHHHHHHHHHHHHcCCCcEEEEEEEe------CC
Confidence                   0135677888999999988643 33221211111  12455566777888999997 66443221      11


Q ss_pred             CCHHHHHHHHHHHHHCCcC--EEEEcCCcCCCc--H---HHHHHHHHHHHHhCC
Q 012949          300 IPPSKVAYVAKELHDMGCF--EISLGDTIGVGT--P---GTVVPMLEAVMAVVP  346 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~--P---~~v~~li~~l~~~~p  346 (452)
                      .+.+.+.++++.+.+.|++  -|.+....+...  .   ....++++.+++.++
T Consensus       166 ~n~~ei~~l~~~~~~~gv~~~~ie~mp~~~~~~~~~~~~~~~~ei~~~l~~~~~  219 (334)
T TIGR02666       166 VNDDEIVDLAEFAKERGVTLRFIELMPLGEGNGWREKKFVSADEILERLEQAFG  219 (334)
T ss_pred             CCHHHHHHHHHHHHhcCCeEEEEeccCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence            3457888899999999975  333444333211  1   124566777777664

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=95.77  E-value=0.9  Score=46.95  Aligned_cols=204  Identities=19%  Similarity=0.184  Sum_probs=121.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCccc--------ccC---CHHHHHHHHHhc-cCCceeEEecchhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVP--------QLA---DARDVMEAVRDL-EGARLPVLTPNLKVILQR  210 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p--------~~~---D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r  210 (452)
                      .++.+....+++.-.+.+.+.|--.+.. .-++.+        +-.   -.+.+...++.. ....+++.+.- .     
T Consensus        20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHL-D-----   93 (340)
T cd00453          20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHT-D-----   93 (340)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEc-C-----
Confidence            3788999999999999999988776551 112111        100   022333333322 23333432210 0     


Q ss_pred             hhhhhhccchhhhhhhhccHHhHHHHHHcC-----------CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          211 SILFQQCHASVISSNLWVYLQGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G-----------i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                           .|...        ..+.++.|+++|           ..-|.+=.|.          .+.+|.++..++++++|+.
T Consensus        94 -----H~~~~--------~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~----------l~~eeNi~~T~~vve~Ah~  150 (340)
T cd00453          94 -----HCAKK--------LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSE----------ESLQENIEICSKYLERMSK  150 (340)
T ss_pred             -----CCCCC--------CHHHHHHHHHcCCccccccCCCCceeEEecCCC----------CCHHHHHHHHHHHHHHHHH
Confidence                 11100        124889999999           7777654332          2468899999999999999


Q ss_pred             CCCcEEEEEEeeecCCCC----------CCCCHHHHHHHHHHHHHC-CcCEEE--EcCCcCCC---cHHHHHHHHHHHHH
Q 012949          280 LSIPVRGYVSCVVGCPVE----------GAIPPSKVAYVAKELHDM-GCFEIS--LGDTIGVG---TPGTVVPMLEAVMA  343 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~----------~r~d~e~l~~~a~~l~~~-Gad~I~--L~DT~G~~---~P~~v~~li~~l~~  343 (452)
                      .|+.|.+.|-..-|.++.          ..++|+...+++++.-+. .+|.+.  +.-.=|.-   .|.-=.++++.+++
T Consensus       151 ~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~  230 (340)
T cd00453         151 IGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQE  230 (340)
T ss_pred             cCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHH
Confidence            999999888876555433          135788877777544210 055333  32333332   23333455555555


Q ss_pred             hCC--------CccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          344 VVP--------VEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       344 ~~p--------~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .++        +++|.+|.  .-|+.--....|+..|+.-|+.
T Consensus       231 ~~~~~~gl~~~~~pLVlHG--gSG~~~e~~~~ai~~Gi~KiNi  271 (340)
T cd00453         231 YVSKKHNLPHNSLNFVFHG--GSGSTAQEIKDSVSYGVVKMNI  271 (340)
T ss_pred             HHHhhcccCCCCCceEEeC--CCCCCHHHHHHHHHcCCeEEEc
Confidence            552        45666665  5667778888899999875543

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=95.71  E-value=0.16  Score=49.37  Aligned_cols=201  Identities=20%  Similarity=0.191  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ++..++++...+.|++.|-+..        .+  .....+.+.. .+.++..++  |.-.           ...+.-  .
T Consensus        19 ~~~~~~~~~a~~~~~~av~v~p--------~~--~~~~~~~~~~-~~~~~~~vi~fp~g~-----------~~~~~k--~   74 (236)
T PF01791_consen   19 EDIKKLCREAIEYGFDAVCVTP--------GY--VKPAAELLAG-SGVKVGLVIGFPFGT-----------STTEPK--G   74 (236)
T ss_dssp             HHHHHHHHHHHHHTSSEEEEEG--------GG--HHHHHHHSTT-STSEEEEEESTTTSS-----------STHHHH--T
T ss_pred             hhHHHHHHHHHHhCCCEEEECH--------HH--HHHHHHHhhc-cccccceEEEeCCCC-----------Cccccc--c
Confidence            3788899999999999999852        11  1111222221 123444433  2111           000000  0


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      +......++.|++.|++.|.+.+.......     -..++.++.+.++++.|++.|+++... .+..+.+.....+++.+
T Consensus        75 ~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~-----~~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I  148 (236)
T PF01791_consen   75 YDQIVAEVEEAIRLGADEVDVVINYGALGS-----GNEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLI  148 (236)
T ss_dssp             CEEEHHHHHHHHHTT-SEEEEEEEHHHHHT-----THHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHH
T ss_pred             ccchHHHHHHHHHcCCceeeeecccccccc-----ccHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHH
Confidence            000034789999999999999876533211     125678889999999999999998654 33322222223356788


Q ss_pred             HHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHh-CCCccEEEEe-----CCCcCcHHHHHHHHHHcCCCEEee
Q 012949          306 AYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAV-VPVEKLAVHL-----HDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~-~p~~~l~vH~-----Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ...++.+.++|+|.|-..=+ ....++..+..+-+.+.+. .|. .+.+..     +.++=-.+.-++..+++||+++=+
T Consensus       149 ~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~-~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~  227 (236)
T PF01791_consen  149 ARAARIAAELGADFVKTSTGKPVGATPEDVELMRKAVEAAPVPG-KVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGT  227 (236)
T ss_dssp             HHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHHHHHHHHTHSSTT-TSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEE
T ss_pred             HHHHHHHHHhCCCEEEecCCccccccHHHHHHHHHHHHhcCCCc-ceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHH
Confidence            99999999999998877544 2445666666655555432 232 122222     222223467778888999987544


Q ss_pred             c
Q 012949          379 S  379 (452)
Q Consensus       379 S  379 (452)
                      +
T Consensus       228 ~  228 (236)
T PF01791_consen  228 S  228 (236)
T ss_dssp             E
T ss_pred             H
Confidence            4

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PRK06852 aldolase; Validated

Probab=95.70  E-value=0.73  Score=47.01  Aligned_cols=131  Identities=15%  Similarity=0.039  Sum_probs=89.8

Q ss_pred             hHHHHHHcC------CCEE--EEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          232 GFEAAIAAG------AKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       232 ~ie~a~~~G------i~~V--~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                      .++.|++.|      ++-|  +++.. |+.         ..+.|+++.++++.|+++|+++.+ .+|..|.......+++
T Consensus       120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~  188 (304)
T PRK06852        120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH  188 (304)
T ss_pred             cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence            688899988      5544  44444 332         247889999999999999999764 5666665544456789


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCC--CcCcHHHHHHHHHH-cCCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQ-MGISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--d~GlA~ANaLaAl~-aGa~~VD  377 (452)
                      .+...++.+.++|||.|-..=|.  |-..|+.+.+.++..   -| ++|-+=.=-  +.--.+..+..|++ +|+..|.
T Consensus       189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~-vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~  263 (304)
T PRK06852        189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GR-TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA  263 (304)
T ss_pred             HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CC-CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence            99999999999999998886552  224577777766542   12 244342221  22225778888988 9988664

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH

Probab=95.68  E-value=0.95  Score=46.21  Aligned_cols=160  Identities=15%  Similarity=0.133  Sum_probs=96.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.+   +.+++.|+..|.+.. .-    |-+ .|..++++.+++. +..+. ++.|-- ++              
T Consensus        58 ~ls~ee~~---~~i~e~g~~~V~i~G-GE----PLL~pdl~eiv~~~~~~-g~~v~-l~TNG~-ll--------------  112 (318)
T TIGR03470        58 RLSVEECL---RAVDECGAPVVSIPG-GE----PLLHPEIDEIVRGLVAR-KKFVY-LCTNAL-LL--------------  112 (318)
T ss_pred             CCCHHHHH---HHHHHcCCCEEEEeC-cc----ccccccHHHHHHHHHHc-CCeEE-EecCce-eh--------------
Confidence            35666544   456678998887753 22    323 2445566655542 33332 333321 01              


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                             .+.++...+.+...|.|.+ +..+.|-+..   ..+..++++.+.++.+++.|+.|.++..  +    ....+
T Consensus       113 -------~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~---~~~g~f~~~l~~I~~l~~~G~~v~v~~t--v----~~~~n  176 (318)
T TIGR03470       113 -------EKKLDKFEPSPYLTFSVHLDGLREHHDASV---CREGVFDRAVEAIREAKARGFRVTTNTT--L----FNDTD  176 (318)
T ss_pred             -------HHHHHHHHhCCCcEEEEEEecCchhhchhh---cCCCcHHHHHHHHHHHHHCCCcEEEEEE--E----eCCCC
Confidence                   1245566677888777764 4444443321   2234577778888999999998764332  2    12457


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcC---------CcCCCcHHHHHHHHHHHHHh
Q 012949          302 PSKVAYVAKELHDMGCFEISLGD---------TIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~D---------T~G~~~P~~v~~li~~l~~~  344 (452)
                      ++.+.++++.+.+.|++.+.+.-         .--.+.+.+..++++.+.+.
T Consensus       177 ~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~~~  228 (318)
T TIGR03470       177 PEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVLSN  228 (318)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHHhh
Confidence            89999999999999999887731         12245677777777777653

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.63  E-value=0.63  Score=48.21  Aligned_cols=84  Identities=14%  Similarity=0.033  Sum_probs=62.3

Q ss_pred             hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC----CCHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA----IPPSKVA  306 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r----~d~e~l~  306 (452)
                      .++.|++.|++-|.+.+.. |+.         ..+.++.+.++++.|+++|+.+.+ .++..|......    ++++.+.
T Consensus       151 sVedAlrLGAdAV~~tvy~Gs~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~Ia  220 (348)
T PRK09250        151 SVEDALRLGAVAVGATIYFGSEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLTG  220 (348)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHHH
Confidence            6889999999966554321 332         236788999999999999999764 566665443322    2478999


Q ss_pred             HHHHHHHHCCcCEEEEcCC
Q 012949          307 YVAKELHDMGCFEISLGDT  325 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT  325 (452)
                      ..++.+.++|||.|-..=|
T Consensus       221 ~AaRiaaELGADIVKv~yp  239 (348)
T PRK09250        221 QANHLAATIGADIIKQKLP  239 (348)
T ss_pred             HHHHHHHHHcCCEEEecCC
Confidence            9999999999998887654

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=95.62  E-value=2.7  Score=41.80  Aligned_cols=201  Identities=19%  Similarity=0.236  Sum_probs=109.4

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----HhccC-CceeEEec
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLEG-ARLPVLTP  202 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~~-~~l~~l~~  202 (452)
                      |+.+|+ |-..--+.+++.+..++.+..+.+.|.+.|++|.-++ |.. +. -+.++.++++    +.+.. ..++.-+.
T Consensus         6 IlN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~-~~-i~~~~E~~rl~~~v~~i~~~~~~plSID   82 (257)
T cd00739           6 ILNVTP-DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGA-DP-VSVEEELERVIPVLEALRGELDVLISVD   82 (257)
T ss_pred             EEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCC-CC-CCHHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence            445554 4444444568999999999999999999999996432 321 11 2344444443    33321 12221111


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      ..                        ..+-+++|++.|++.|.=.....+               +  .++++.+++.|.
T Consensus        83 T~------------------------~~~v~e~al~~G~~iINdisg~~~---------------~--~~~~~l~~~~~~  121 (257)
T cd00739          83 TF------------------------RAEVARAALEAGADIINDVSGGSD---------------D--PAMLEVAAEYGA  121 (257)
T ss_pred             CC------------------------CHHHHHHHHHhCCCEEEeCCCCCC---------------C--hHHHHHHHHcCC
Confidence            11                        124778899999886652211110               0  244566778887


Q ss_pred             cEEEEEEeeecCCCCCC----C------CHHHHHHHHHHHHHCCcC--EEEEcCCc-CCC-cHHHHHHHHHHHH---Hh-
Q 012949          283 PVRGYVSCVVGCPVEGA----I------PPSKVAYVAKELHDMGCF--EISLGDTI-GVG-TPGTVVPMLEAVM---AV-  344 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r----~------d~e~l~~~a~~l~~~Gad--~I~L~DT~-G~~-~P~~v~~li~~l~---~~-  344 (452)
                      .+.  ++..-|-|-...    +      -.+++.+..+.+.++|.+  .|.+ |-- |.. ++++-.++++.++   +. 
T Consensus       122 ~vV--~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~-DPg~gf~ks~~~~~~~l~~i~~l~~~~  198 (257)
T cd00739         122 PLV--LMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIIL-DPGIGFGKTPEHNLELLRRLDELKQLG  198 (257)
T ss_pred             CEE--EECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-ecCCCcccCHHHHHHHHHHHHHHHhCC
Confidence            765  343222221100    0      013455667778889975  6766 652 332 3455555555554   21 


Q ss_pred             CCCccEE------------EEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          345 VPVEKLA------------VHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       345 ~p~~~l~------------vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +|. -++            ...++..+--++-+..|++.||+++=
T Consensus       199 ~pi-l~G~SrkSfig~~~~~~~~~r~~~t~~~~~~~~~~Ga~iiR  242 (257)
T cd00739         199 LPV-LVGASRKSFIGALLGREPKDRDWGTLALSALAAANGADIVR  242 (257)
T ss_pred             CcE-EEEecccHHHHHhcCCCccccchhHHHHHHHHHHcCCCEEE
Confidence            231 122            23345556666777778889988763

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.58  E-value=0.27  Score=48.61  Aligned_cols=204  Identities=14%  Similarity=0.094  Sum_probs=116.1

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhh
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKV  206 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~  206 (452)
                      +-=+|-|+-.|.     ..+.++..++++...+.|++.+-+..    .+++...      +..  ..++++.+-+ +.. 
T Consensus        20 ~~aiDh~~l~gp-----~~~~~~~~~~~~~a~~~~~~~v~~~p----~~~~~~~------~~~--~~~~~~~~~~-~~~-   80 (258)
T TIGR01949        20 IVPMDHGVSNGP-----IKGLVDIRKTVNEVAEGGADAVLLHK----GIVRRGH------RGY--GKDVGLIIHL-SAS-   80 (258)
T ss_pred             EEECCCccccCC-----CCCcCCHHHHHHHHHhcCCCEEEeCc----chhhhcc------ccc--CCCCcEEEEE-cCC-
Confidence            344566654442     34677888899999999999999852    1121110      000  1233322111 000 


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                           ..+......   .   .....++.|++.|++.|.+.....+        .+..+.++.+..+.+.+++.|+++.+
T Consensus        81 -----~~~g~~~~~---~---~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv  141 (258)
T TIGR01949        81 -----TSLSPDPND---K---RIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLA  141 (258)
T ss_pred             -----CCCCCCCCc---c---eeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEE
Confidence                 001100000   0   0113688999999998888764221        12345678888888999999998764


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE-EEEeCC--CcCcHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL-AVHLHD--TYGQSLP  363 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l-~vH~Hn--d~GlA~A  363 (452)
                      . .+..|-.. +..+++.+.+.++.+.++|||.|.+. .  ...++.    ++.+.+..+. |+ ..=.-+  |+..++.
T Consensus       142 ~-~~~~Gvh~-~~~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~----l~~~~~~~~i-PVva~GGi~~~~~~~~~~  211 (258)
T TIGR01949       142 M-MYPRGPHI-DDRDPELVAHAARLGAELGADIVKTP-Y--TGDIDS----FRDVVKGCPA-PVVVAGGPKTNSDREFLQ  211 (258)
T ss_pred             E-EeccCccc-ccccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHH----HHHHHHhCCC-cEEEecCCCCCCHHHHHH
Confidence            2 22222111 22456667777788889999999975 2  123333    3444443322 33 222233  6778899


Q ss_pred             HHHHHHHcCCCEEee
Q 012949          364 NILISLQMGISTVDC  378 (452)
Q Consensus       364 NaLaAl~aGa~~VD~  378 (452)
                      |.-.++++||+.+-.
T Consensus       212 ~i~~~~~aGa~Gia~  226 (258)
T TIGR01949       212 MIKDAMEAGAAGVAV  226 (258)
T ss_pred             HHHHHHHcCCcEEeh
Confidence            999999999995543

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=95.58  E-value=1.4  Score=42.53  Aligned_cols=164  Identities=17%  Similarity=0.183  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCC--cccccC-----------CHHHHHHHHHhc--cCCceeEEecchhhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQLA-----------DARDVMEAVRDL--EGARLPVLTPNLKVILQ  209 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~--~~p~~~-----------D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~  209 (452)
                      .+.++.+++.+.|+.-|.+.||.|.|-|-.  ..|...           ..+.+++.++..  .++.++...        
T Consensus        29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiL--------  100 (268)
T KOG4175|consen   29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIIL--------  100 (268)
T ss_pred             CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceee--------
Confidence            467888999999999999999999864321  112221           234555555542  223333211        


Q ss_pred             hhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949          210 RSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  289 (452)
Q Consensus       210 r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~  289 (452)
                        ++|-..   +   ++......++.|+++|+..+.|.+-.            .||    ...+-++||++|+....   
T Consensus       101 --mgYYNP---I---l~yG~e~~iq~ak~aGanGfiivDlP------------pEE----a~~~Rne~~k~gislvp---  153 (268)
T KOG4175|consen  101 --MGYYNP---I---LRYGVENYIQVAKNAGANGFIIVDLP------------PEE----AETLRNEARKHGISLVP---  153 (268)
T ss_pred             --eecccH---H---HhhhHHHHHHHHHhcCCCceEeccCC------------hHH----HHHHHHHHHhcCceEEE---
Confidence              121110   1   11223457888999999887776521            223    33556899999987642   


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc-----HHHHHHHHHHHHHhCCCccEEE
Q 012949          290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT-----PGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~-----P~~v~~li~~l~~~~p~~~l~v  352 (452)
                            -..+.+++.-.++.-.+.+   .-||+.-.+|+--     -..+.+|+..+|+...+.|+.+
T Consensus       154 ------LvaPsTtdeRmell~~~ad---sFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV  212 (268)
T KOG4175|consen  154 ------LVAPSTTDERMELLVEAAD---SFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV  212 (268)
T ss_pred             ------eeCCCChHHHHHHHHHhhc---ceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence                  1233444444444443433   2556655555432     2456788888888777767666

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.55  E-value=1.5  Score=41.83  Aligned_cols=169  Identities=20%  Similarity=0.187  Sum_probs=103.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      .+..+-.++++...+.|.+.|-+--.  +.+..  .+. +.++.+++..+  +++++-.          |..        
T Consensus        28 ~~~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~-~~~~~i~~~v~--iPi~~~~----------~i~--------   82 (217)
T cd00331          28 REDFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSL-EDLRAVREAVS--LPVLRKD----------FII--------   82 (217)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCH-HHHHHHHHhcC--CCEEECC----------eec--------
Confidence            35567789999999999999976311  00000  122 34556655433  3333211          000        


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          ....++.+.++|++.|.+....-+              .+.+++++++++..|+.+.+.+.           +.+.
T Consensus        83 ----~~~~v~~~~~~Gad~v~l~~~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e  133 (217)
T cd00331          83 ----DPYQIYEARAAGADAVLLIVAALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE  133 (217)
T ss_pred             ----CHHHHHHHHHcCCCEEEEeeccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH
Confidence                123789999999999998765322              14556777888889988743221           2333


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                          ++.+.+.|++.+.+....+...+..+ +++..+++.+| ..++-.=    .|.. ..+....+++||+.|
T Consensus       134 ----~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv  198 (217)
T cd00331         134 ----LERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV  198 (217)
T ss_pred             ----HHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence                55566789999988877766666665 66777777763 3333221    2332 378888889998854

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=95.54  E-value=0.58  Score=45.47  Aligned_cols=202  Identities=19%  Similarity=0.293  Sum_probs=118.4

Q ss_pred             chhhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHH
Q 012949          109 DKDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA  188 (452)
Q Consensus       109 ~~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~  188 (452)
                      .+.+++|.++      +-+|++     -|..    -|+.+...+++++-...|.++|++.           +|+ ++.+.
T Consensus         3 ~~l~~~~~~~------~alKVI-----sGLn----NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp-~LV~~   55 (242)
T PF04481_consen    3 SKLQQAFAQR------RALKVI-----SGLN----NFDAESVAAIVKAAEIGGATFVDIA-----------ADP-ELVKL   55 (242)
T ss_pred             hHHHHHHHhC------cchhhe-----eCcc----ccCHHHHHHHHHHHHccCCceEEec-----------CCH-HHHHH
Confidence            3455565555      235555     3444    3899999999999999999999994           454 56777


Q ss_pred             HHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHH
Q 012949          189 VRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV  268 (452)
Q Consensus       189 i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~  268 (452)
                      ++.+.+..+.  +-..+                        .+.+-.+.++|++.|.|-..  |.|-......+.+|.| 
T Consensus        56 ~~~~s~lPIC--VSaVe------------------------p~~f~~aV~AGAdliEIGNf--DsFY~qGr~f~a~eVL-  106 (242)
T PF04481_consen   56 AKSLSNLPIC--VSAVE------------------------PELFVAAVKAGADLIEIGNF--DSFYAQGRRFSAEEVL-  106 (242)
T ss_pred             HHHhCCCCeE--eecCC------------------------HHHHHHHHHhCCCEEEecch--HHHHhcCCeecHHHHH-
Confidence            7776654433  33222                        24677889999998887543  3343333444555555 


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--HHHHHHHH----HHH
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLE----AVM  342 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~li~----~l~  342 (452)
                         ++.+..|++=-.+.  |+-++  |  .-.+.+.=.+++..+.++|+|.|.=---. ...|  ..+-.+|+    .|.
T Consensus       107 ---~Lt~~tR~LLP~~~--LsVTV--P--HiL~ld~Qv~LA~~L~~~GaDiIQTEGgt-ss~p~~~g~lglIekaapTLA  176 (242)
T PF04481_consen  107 ---ALTRETRSLLPDIT--LSVTV--P--HILPLDQQVQLAEDLVKAGADIIQTEGGT-SSKPTSPGILGLIEKAAPTLA  176 (242)
T ss_pred             ---HHHHHHHHhCCCCc--eEEec--C--ccccHHHHHHHHHHHHHhCCcEEEcCCCC-CCCCCCcchHHHHHHHhHHHH
Confidence               45566666533333  33222  2  23567888899999999999998642211 1112  11111111    111


Q ss_pred             HhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          343 AVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       343 ~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ..+-. ..+.+-.=.--|+.--.+=.|+.+||..|
T Consensus       177 aay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGV  211 (242)
T PF04481_consen  177 AAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGV  211 (242)
T ss_pred             HHHHHHhccCCceEeccCcchhhHHHHHHcCCccc
Confidence            11100 00111122346888888888999998754

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=95.47  E-value=2.7  Score=41.10  Aligned_cols=188  Identities=17%  Similarity=0.159  Sum_probs=112.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccc
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHA  219 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~  219 (452)
                      +...+.++..++++.-.+.|+..+.+    +|.|+|.      -.+.++.-...++...+  |.-.         .... 
T Consensus        18 k~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~---------~~t~-   77 (228)
T COG0274          18 KPDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGA---------NTTA-   77 (228)
T ss_pred             CCCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCC---------ChHH-
Confidence            44678899999999999999988888    3555552      12333321122222222  2111         0000 


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                              +.....+.|++.|+++|.+.++...+     .....+...+.++.+++.+... ..+-+-|..       ..
T Consensus        78 --------~K~~Ea~~ai~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt-------~~  136 (228)
T COG0274          78 --------VKAAEAREAIENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILET-------GL  136 (228)
T ss_pred             --------HHHHHHHHHHHcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEec-------cc
Confidence                    11236678999999999999876443     2345677777787788887765 333322321       23


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.+...+.++.+.++|+|-|-=.=  +.|.+|++.+.-|.+.+..     .+++-.----.. ..-+++-+++|+.+|
T Consensus       137 Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~edv~lM~~~vg~-----~vgvKaSGGIrt-~eda~~~i~aga~Ri  209 (228)
T COG0274         137 LTDEEKRKACEIAIEAGADFVKTSTGFSAGGATVEDVKLMKETVGG-----RVGVKASGGIRT-AEDAKAMIEAGATRI  209 (228)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhcc-----CceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence            4566778899999999999764311  1466678877776666532     344444332222 255666778886654

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=95.45  E-value=1.3  Score=45.16  Aligned_cols=138  Identities=22%  Similarity=0.211  Sum_probs=86.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.++..++++.+.+.|+..|.++. .-    |.+ .|..++++.+++..+ ..+.+.+.+..  +             
T Consensus        48 ~ls~eei~~~i~~~~~~gi~~I~~tG-GE----Pll~~~l~~li~~i~~~~~~~~i~itTNG~l--l-------------  107 (331)
T PRK00164         48 LLSLEEIERLVRAFVALGVRKVRLTG-GE----PLLRKDLEDIIAALAALPGIRDLALTTNGYL--L-------------  107 (331)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcCccCHHHHHHHHHhcCCCceEEEEcCchh--H-------------
Confidence            58999999999999999999998864 22    333 245566666665432 23332222211  0             


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r  299 (452)
                              .+.++...++|++.|.|.+.. ++... ..++  ....++++.+.++.+++.|+ .|..+....   +   .
T Consensus       108 --------~~~~~~L~~agl~~i~ISlds~~~e~~-~~i~--~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~---~---g  170 (331)
T PRK00164        108 --------ARRAAALKDAGLDRVNVSLDSLDPERF-KAIT--GRDRLDQVLAGIDAALAAGLTPVKVNAVLM---K---G  170 (331)
T ss_pred             --------HHHHHHHHHcCCCEEEEEeccCCHHHh-ccCC--CCCCHHHHHHHHHHHHHCCCCcEEEEEEEE---C---C
Confidence                    125677788999999988643 33211 1121  12456777788899999998 666433211   1   1


Q ss_pred             CCHHHHHHHHHHHHHCCcC
Q 012949          300 IPPSKVAYVAKELHDMGCF  318 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad  318 (452)
                      .+.+.+.++++.+.+.|++
T Consensus       171 ~n~~ei~~l~~~~~~~gv~  189 (331)
T PRK00164        171 VNDDEIPDLLEWAKDRGIQ  189 (331)
T ss_pred             CCHHHHHHHHHHHHhCCCe
Confidence            2447888888888899986

>PRK08227 autoinducer 2 aldolase; Validated

Probab=95.43  E-value=0.83  Score=45.74  Aligned_cols=124  Identities=20%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ++|.|++.|++-|.+.+.. |+.         ..+.|+++.++++.|.++|+++-+  .+..|....  .+++.+...++
T Consensus        99 sVeeAvrlGAdAV~~~v~~Gs~~---------E~~~l~~l~~v~~ea~~~G~Plla--~~prG~~~~--~~~~~ia~aaR  165 (264)
T PRK08227         99 DMEDAVRLNACAVAAQVFIGSEY---------EHQSIKNIIQLVDAGLRYGMPVMA--VTAVGKDMV--RDARYFSLATR  165 (264)
T ss_pred             cHHHHHHCCCCEEEEEEecCCHH---------HHHHHHHHHHHHHHHHHhCCcEEE--EecCCCCcC--chHHHHHHHHH
Confidence            6889999999966554322 332         247889999999999999999875  333332222  25668888999


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC--CcCcHHHHHHHHHHcCCCEEee
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--d~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ...++|||.|-..=|      .   +-++.+.+..|. |+-+=.=-  +.--.+.....|+++||..|..
T Consensus       166 iaaELGADiVK~~y~------~---~~f~~vv~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~  225 (264)
T PRK08227        166 IAAEMGAQIIKTYYV------E---EGFERITAGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM  225 (264)
T ss_pred             HHHHHcCCEEecCCC------H---HHHHHHHHcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence            999999999887543      1   333444444443 44442211  2233688888999999987754

>PLN02858 fructose-bisphosphate aldolase

Probab=95.42  E-value=0.88  Score=55.26  Aligned_cols=228  Identities=14%  Similarity=0.096  Sum_probs=147.4

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS  211 (452)
Q Consensus       135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~  211 (452)
                      +++.+..+.  .++.+....+++.-.+.+.+.|--.++..-++.+    .+ +...++.. ....+++.+.- .      
T Consensus      1110 ~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~~vpV~lHL-D------ 1177 (1378)
T PLN02858       1110 EKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG----IP-LVSCCIAAAEQASVPITVHF-D------ 1177 (1378)
T ss_pred             HHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC----HH-HHHHHHHHHHHCCCCEEEEC-C------
Confidence            345555553  4899999999999999999988776654333222    12 33333321 23333432211 0      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                          .+          ...+.+.+|+++|.+-|.+=.|.          .+.||.++.-++++++|+..|+.|++.|-..
T Consensus      1178 ----Hg----------~~~~~i~~ai~~Gf~SVM~DgS~----------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v 1233 (1378)
T PLN02858       1178 ----HG----------TSKHELLEALELGFDSVMVDGSH----------LSFTENISYTKSISSLAHSKGLMVEAELGRL 1233 (1378)
T ss_pred             ----CC----------CCHHHHHHHHHhCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence                11          02358899999999998875443          2468899999999999999999999888876


Q ss_pred             ecCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC---cHHHHHHHHHHHHHhCC--CccEEEEeCC
Q 012949          292 VGCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG---TPGTVVPMLEAVMAVVP--VEKLAVHLHD  356 (452)
Q Consensus       292 ~g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~---~P~~v~~li~~l~~~~p--~~~l~vH~Hn  356 (452)
                      -|.++.        ..++|+...++++   +-|+|.+.++  -.=|.-   .|.-=.++++.+++.++  ++||.+|.  
T Consensus      1234 ~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHG-- 1308 (1378)
T PLN02858       1234 SGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHG-- 1308 (1378)
T ss_pred             CCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeC--
Confidence            555543        1457776666665   4588855443  344443   24455678899998873  45777766  


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHH
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLML  421 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~  421 (452)
                      .-|..-.....|++.|+.-|                  |..||--.++.+.+.-...+|+.++..
T Consensus      1309 gSG~~~~~~~~ai~~Gi~Ki------------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858       1309 ASGLPESLIKECIENGVRKF------------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred             CCCCCHHHHHHHHHcCCeEE------------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence            45666889999999998766                  456666666665532233466555443

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=95.35  E-value=2.8  Score=43.74  Aligned_cols=210  Identities=16%  Similarity=0.122  Sum_probs=124.6

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc---------cccC---CHHHHHHHHHhc-cCCceeEE
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV---------PQLA---DARDVMEAVRDL-EGARLPVL  200 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~---------p~~~---D~e~v~~~i~~~-~~~~l~~l  200 (452)
                      .+.+..+.  .++.+....+++.-.+..-+.|--.++..-+++         |+.+   ....+...++.. ...++++.
T Consensus        24 ~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPVa  103 (357)
T TIGR01520        24 ENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVV  103 (357)
T ss_pred             HCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence            33444443  478889999999999999998776654322221         1110   011122333322 22333332


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccH--HhHHHHHHcC-----------CCEEEEEecCChHHHhhhcCCCHHHHH
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYL--QGFEAAIAAG-----------AKEVAIFASASEAFSKSNINCSIEDSL  267 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~--~~ie~a~~~G-----------i~~V~i~~s~Sd~~~~~~~~~s~e~~l  267 (452)
                      +. +.        +  +.          ..  +.++.|+++|           ..-|.+=.|.          .+.|+.+
T Consensus       104 lH-LD--------H--g~----------~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~----------lpfeENI  152 (357)
T TIGR01520       104 LH-TD--------H--CA----------KKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSE----------EPIEENI  152 (357)
T ss_pred             EE-CC--------C--CC----------CcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCC----------CCHHHHH
Confidence            21 00        0  10          11  2466677765           6766654332          3468899


Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEeeecCCCC----C------CCCHHHHHHHHHHHH-HCCcCEE--EEcCCcCCCc---H
Q 012949          268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----G------AIPPSKVAYVAKELH-DMGCFEI--SLGDTIGVGT---P  331 (452)
Q Consensus       268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----~------r~d~e~l~~~a~~l~-~~Gad~I--~L~DT~G~~~---P  331 (452)
                      +.-++++++|+..|+.|.+.|-..-|.++.    .      .++|+...+++++.. .-|+|.+  .+.-.=|.-.   |
T Consensus       153 ~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p  232 (357)
T TIGR01520       153 EICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNV  232 (357)
T ss_pred             HHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCC
Confidence            999999999999999999888876455542    1      468888888887652 3377744  4444444432   4


Q ss_pred             HHHHHHHHHH----HHhCCC-----ccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          332 GTVVPMLEAV----MAVVPV-----EKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       332 ~~v~~li~~l----~~~~p~-----~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .--.++++.+    ++..+.     ++|.+|.  .-|+.-.....|+..|+.-|+.
T Consensus       233 ~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KINi  286 (357)
T TIGR01520       233 KLTPDILADGQEYVSEKLGLPAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMNI  286 (357)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence            3445556666    344321     2266654  6678888999999999987754

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=95.33  E-value=1.2  Score=43.67  Aligned_cols=172  Identities=14%  Similarity=0.099  Sum_probs=101.7

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+-++.|.+ |++.+=+-..- -.++|.+.=..++++.+++.++..+-+  ++.+-                        
T Consensus        18 ~~el~~l~~-g~d~lH~DiMD-G~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P------------------------   71 (229)
T PRK09722         18 KEQIEFLNS-KADYFHIDIMD-GHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDP------------------------   71 (229)
T ss_pred             HHHHHHHHh-CCCEEEEeccc-CccCCCcccCHHHHHHHHhcCCCCeEEEEEecCH------------------------
Confidence            344456666 88876663210 113454432235677787655444333  22221                        


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                       .+.++..+++|++.|.+-.-+++               ....++++++|++|+++...|.     |.   ++.+.+.++
T Consensus        72 -~~~i~~~~~aGad~it~H~Ea~~---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~  127 (229)
T PRK09722         72 -QDYIDQLADAGADFITLHPETIN---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYY  127 (229)
T ss_pred             -HHHHHHHHHcCCCEEEECccCCc---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHH
Confidence             13678888999998887653221               2334678999999999875443     32   456777776


Q ss_pred             HHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          309 AKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       309 a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +..+     |.|-+    +.-.|...-..+.+-|+.+++..+...+.+..==|=|.-..|+-...++||+.+=
T Consensus       128 l~~v-----D~VLvMsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V  195 (229)
T PRK09722        128 IHLL-----DKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI  195 (229)
T ss_pred             HHhc-----CEEEEEEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence            6643     32222    3334444445566667777765543223333444778889999999999999763

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=95.32  E-value=0.22  Score=48.24  Aligned_cols=173  Identities=18%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      -..+.++-+++++.+.+. ++.||+|-|--..      .--+..+.+|.. ++..+.   ...+          -+   +
T Consensus        11 D~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~------eG~~aV~~lr~~~pd~~Iv---AD~K----------t~---D   67 (217)
T COG0269          11 DLLDLEEAIEIAEEVADY-VDIIEVGTPLIKA------EGMRAVRALRELFPDKIIV---ADLK----------TA---D   67 (217)
T ss_pred             cccCHHHHHHHHHHhhhc-ceEEEeCcHHHHH------hhHHHHHHHHHHCCCCeEE---eeee----------ec---c
Confidence            357889999999999999 9999999753111      111234455543 443221   1222          00   0


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                      .      -.=.++.|.++|.|.+.+...+.+               +.+..+++.|++.|.++.+.+..+        .+
T Consensus        68 ~------G~~e~~ma~~aGAd~~tV~g~A~~---------------~TI~~~i~~A~~~~~~v~iDl~~~--------~~  118 (217)
T COG0269          68 A------GAIEARMAFEAGADWVTVLGAADD---------------ATIKKAIKVAKEYGKEVQIDLIGV--------WD  118 (217)
T ss_pred             h------hHHHHHHHHHcCCCEEEEEecCCH---------------HHHHHHHHHHHHcCCeEEEEeecC--------CC
Confidence            0      011567899999999999876654               556788899999999998766532        23


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          302 PSKVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      |+   +.++.+.++|++.+.+=     -+.|.--+...-+.++.+.+  ++..+.+    +=|+-.-+.-.....|++.|
T Consensus       119 ~~---~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~--~g~~vAV----aGGI~~~~i~~~~~~~~~iv  189 (217)
T COG0269         119 PE---QRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD--LGAKVAV----AGGITPEDIPLFKGIGADIV  189 (217)
T ss_pred             HH---HHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc--cCceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence            43   34455566899877761     22354333443333443333  1234555    45888888888888997755

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type

Probab=95.31  E-value=0.73  Score=48.42  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=69.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh-c--cCCceeEEecchh--hhhhhhhhhhhcc
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-L--EGARLPVLTPNLK--VILQRSILFQQCH  218 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~-~--~~~~l~~l~~~~~--~~i~r~~~~~~~~  218 (452)
                      .+..+-.+.++.|.++|++.||+-... -|...+. ...+..++.+++ +  .++++.+++++.-  .... --++....
T Consensus        29 ~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~-~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~-~g~las~d  106 (382)
T TIGR02631        29 RTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPP-QERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFK-DGGFTSND  106 (382)
T ss_pred             CCCcCHHHHHHHHHHhCCCEEEecccccCCCCCCh-hHHHHHHHHHHHHHHHhCCeEEEeeccccCCcccc-CCCCCCCC
Confidence            455567788999999999999985211 1111110 011122333432 2  4666666665421  0000 00111111


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHH----HHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE----DSLVRYRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e----~~l~~~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                      ..+-+......++.++.|.+.|.+.|.+...-...  ......+++    ...+.+..+.++|++.|..|...|..
T Consensus       107 ~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~--~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp  180 (382)
T TIGR02631       107 RSVRRYALRKVLRNMDLGAELGAETYVVWGGREGA--EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP  180 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc
Confidence            11111111112457788889999998887542100  000112233    34455556677888887556555654

This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.

>TIGR01210 conserved hypothetical protein TIGR01210

Probab=95.27  E-value=0.78  Score=46.80  Aligned_cols=90  Identities=16%  Similarity=0.166  Sum_probs=60.8

Q ss_pred             HHhHHHHHHcCCC-EEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-CCHHHHH
Q 012949          230 LQGFEAAIAAGAK-EVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVA  306 (452)
Q Consensus       230 ~~~ie~a~~~Gi~-~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~d~e~l~  306 (452)
                      .+.++.+.++|+. .|.+-+ +.||.-++..+|+..  ..+.+.++++.+++.|+.|.++++  +|.|..+. -+.+.+.
T Consensus       117 ~e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~--t~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~  192 (313)
T TIGR01210       117 EEKLEELRKIGVNVEVAVGLETANDRIREKSINKGS--TFEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMI  192 (313)
T ss_pred             HHHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHH
Confidence            3577778889987 688865 556655533344332  234555778999999999988887  67675443 2356666


Q ss_pred             HHHHHHHHCCcCEEEEcC
Q 012949          307 YVAKELHDMGCFEISLGD  324 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~D  324 (452)
                      +.++.+.+++ +.|.+--
T Consensus       193 ~ti~~~~~l~-~~vs~~~  209 (313)
T TIGR01210       193 SSIRKCIPVT-DTVSINP  209 (313)
T ss_pred             HHHHHHHhcC-CcEEEEC
Confidence            7788888887 7777543

This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=95.27  E-value=0.47  Score=49.23  Aligned_cols=136  Identities=14%  Similarity=0.087  Sum_probs=93.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----------CCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAI  300 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----------~r~  300 (452)
                      +.+.++++.|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-.+-|.++.          ..+
T Consensus       114 ~~~~~a~~~GftSVMiDgS~----------lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yT  183 (345)
T cd00946         114 EYFKQHGEPLFSSHMLDLSE----------EPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYT  183 (345)
T ss_pred             HHHHHhccCCCceEEeeCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCC
Confidence            35566778899998654332          2568999999999999999999999888876444432          147


Q ss_pred             CHHHHHHHHHHHHH-CCcCEEE--EcCCcCCC---cHHHHHHHHHHH----HHhCC-----CccEEEEeCCCcCcHHHHH
Q 012949          301 PPSKVAYVAKELHD-MGCFEIS--LGDTIGVG---TPGTVVPMLEAV----MAVVP-----VEKLAVHLHDTYGQSLPNI  365 (452)
Q Consensus       301 d~e~l~~~a~~l~~-~Gad~I~--L~DT~G~~---~P~~v~~li~~l----~~~~p-----~~~l~vH~Hnd~GlA~ANa  365 (452)
                      +|+...+++++.-. .|+|.+.  +.-.=|.-   .|.--.++++.+    ++.++     .+||.+|.  .-|..-...
T Consensus       184 dPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG--gSG~~~e~i  261 (345)
T cd00946         184 QPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG--GSGSTKEEI  261 (345)
T ss_pred             CHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC--CCCCCHHHH
Confidence            88888888876533 3777443  33344443   243344555555    66653     34666665  558888999


Q ss_pred             HHHHHcCCCEEee
Q 012949          366 LISLQMGISTVDC  378 (452)
Q Consensus       366 LaAl~aGa~~VD~  378 (452)
                      ..|++.|+.-|+.
T Consensus       262 ~kai~~GI~KiNi  274 (345)
T cd00946         262 REAISYGVVKMNI  274 (345)
T ss_pred             HHHHHcCCeeEEe
Confidence            9999999986654

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=95.24  E-value=0.38  Score=47.37  Aligned_cols=155  Identities=15%  Similarity=0.069  Sum_probs=98.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC-CCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~-p~~~r~d~e~l~~~a~  310 (452)
                      ++-.....-+|.+-+....+-++        .+   +-+++.++.|+++|+.|.      .|. -.+.......+.++.+
T Consensus        16 d~Le~~g~yID~lKfg~Gt~~l~--------~~---~~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~   78 (237)
T TIGR03849        16 DYLKVCGDYITFVKFGWGTSALI--------DR---DIVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLN   78 (237)
T ss_pred             HHHHHhhhheeeEEecCceEeec--------cH---HHHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHH
Confidence            44444445677777766555442        12   235688899999999875      221 1111223356677888


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CC-CccEEEEeCC-----CcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VP-VEKLAVHLHD-----TYGQSLPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p-~~~l~vH~Hn-----d~GlA~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      .+.+.|.+.|-|.|..--+.++.-.++|+.++++ +. -..++.....     +...-+-.+-..++|||++|  ++-=.
T Consensus        79 ~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEs  158 (237)
T TIGR03849        79 ECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRES  158 (237)
T ss_pred             HHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhc
Confidence            9999999999999999999999999999999975 21 1124444331     11222335556699999954  66322


Q ss_pred             ----CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          382 ----GLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       382 ----GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                          |+=+      ..|+.-...+-..+..++
T Consensus       159 g~~~Gi~~------~~g~~r~d~v~~i~~~l~  184 (237)
T TIGR03849       159 GKNIGLFD------EKGNVKEDELDVLAENVD  184 (237)
T ss_pred             CCCcceeC------CCCCCchHHHHHHHhhCC
Confidence                4444      567777776666665443

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=95.24  E-value=0.63  Score=49.94  Aligned_cols=101  Identities=15%  Similarity=0.195  Sum_probs=69.7

Q ss_pred             HhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++...++|...|.+-+ +.|+..++ ++++..  ..+.+.++++.++++|+.+.++++  +|.|.++   .+.+.+.+
T Consensus       288 e~l~~l~~aG~~~v~iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPget---~e~~~~ti  359 (472)
T TIGR03471       288 ETLKVMKENGLRLLLVGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGET---RETIRKTI  359 (472)
T ss_pred             HHHHHHHHcCCCEEEEcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCCC---HHHHHHHH
Confidence            467888899999888876 55554333 344432  345566788999999999887666  6777764   67788888


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                      +.+.+.+.+.+.+    ..++|.-=-++.+.+++
T Consensus       360 ~~~~~l~~~~~~~----~~l~P~PGT~l~~~~~~  389 (472)
T TIGR03471       360 DFAKELNPHTIQV----SLAAPYPGTELYDQAKQ  389 (472)
T ss_pred             HHHHhcCCCceee----eecccCCCcHHHHHHHH
Confidence            8888888877654    45566554455555554

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=95.22  E-value=3.2  Score=40.19  Aligned_cols=173  Identities=16%  Similarity=0.151  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ..-.+.++.+.+.|++.|-+-..-. .++|...-..+..+.+++.++..+.+  ++.+.                     
T Consensus        20 ~~l~~~l~~~~~~g~~~ihld~~d~-~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p---------------------   77 (229)
T PLN02334         20 ANLAEEAKRVLDAGADWLHVDVMDG-HFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNP---------------------   77 (229)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccC-CcCCccccCHHHHHHHHhcCCCcEEEEeccCCH---------------------
Confidence            3456678888999999999853211 12343321124566676654433222  12111                     


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          .+.++.+.++|++.|.+-... .+               +...+.++.+++.|+.+...+.     |.   ++.+ 
T Consensus        78 ----~d~~~~~~~~gad~v~vH~~q~~~---------------d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~-  129 (229)
T PLN02334         78 ----EDYVPDFAKAGASIFTFHIEQAST---------------IHLHRLIQQIKSAGMKAGVVLN-----PG---TPVE-  129 (229)
T ss_pred             ----HHHHHHHHHcCCCEEEEeeccccc---------------hhHHHHHHHHHHCCCeEEEEEC-----CC---CCHH-
Confidence                136788899999999555431 11               2334677888889987653221     11   1222 


Q ss_pred             HHHHHHHHHHCC-cCEEE----EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          305 VAYVAKELHDMG-CFEIS----LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~G-ad~I~----L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                         .++.+.+.| +|.|.    .+.+.|-..|....+.++.+++..+..+|.+    +=|.-..|.-..+++||+.|=
T Consensus       130 ---~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv  200 (229)
T PLN02334        130 ---AVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV  200 (229)
T ss_pred             ---HHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence               333444553 88773    3334454456667777788887766545544    446677899999999999773

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=95.21  E-value=0.74  Score=44.89  Aligned_cols=170  Identities=18%  Similarity=0.116  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhc-cCCceeEE--ecchhhhhhhhhhhhhccch
Q 012949          148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l--~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..-.+-++.|.+.|++.+=+    |.|+     |.+.=..++++.+++. ++..+-+.  +-+.                
T Consensus        16 ~~l~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P----------------   74 (223)
T PRK08745         16 ARLGEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPV----------------   74 (223)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCH----------------
Confidence            44456678888899997766    4444     5443224567777765 45544442  2111                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                               ...++..+++|++.|.+-.-++                ....++++++|++|+++...|.     |.   +
T Consensus        75 ---------~~~i~~~~~~gad~I~~H~Ea~----------------~~~~~~l~~Ir~~g~k~Glaln-----P~---T  121 (223)
T PRK08745         75 ---------DRIVPDFADAGATTISFHPEAS----------------RHVHRTIQLIKSHGCQAGLVLN-----PA---T  121 (223)
T ss_pred             ---------HHHHHHHHHhCCCEEEEcccCc----------------ccHHHHHHHHHHCCCceeEEeC-----CC---C
Confidence                     1267788889999888765322                2345778999999998875443     22   4


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          301 PPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +.+.+.+++..     +|.|-+    +.-.|...-..+.+-|+.+++..+...+.+..==|=|....|.-...++||+.+
T Consensus       122 ~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~  196 (223)
T PRK08745        122 PVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF  196 (223)
T ss_pred             CHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence            56777766553     343322    233444444556666677766544322234444477889999999999999855

>TIGR03586 PseI pseudaminic acid synthase

Probab=95.16  E-value=1.8  Score=44.59  Aligned_cols=94  Identities=13%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHH--HHHHHHhCCC
Q 012949          272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPM--LEAVMAVVPV  347 (452)
Q Consensus       272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~l--i~~l~~~~p~  347 (452)
                      .+++++-+.|.+|.  |+.       +..+.+.+...++.+.+.|...|.|  | +.++-+|....+|  |..+++.++ 
T Consensus       125 ~LL~~va~~gkPvi--lst-------G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-  193 (327)
T TIGR03586       125 PLIRYVAKTGKPII--MST-------GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-  193 (327)
T ss_pred             HHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-
Confidence            44566666798886  442       4467899999999999999876666  6 6677667665443  778888885 


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+|++=-| +.|  ...+++|+.+||++|+-=
T Consensus       194 ~pVG~SDH-t~G--~~~~~aAva~GA~iIEkH  222 (327)
T TIGR03586       194 VPVGLSDH-TLG--ILAPVAAVALGACVIEKH  222 (327)
T ss_pred             CCEEeeCC-CCc--hHHHHHHHHcCCCEEEeC
Confidence            57888544 344  688899999999988643

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=95.16  E-value=1.1  Score=46.42  Aligned_cols=85  Identities=11%  Similarity=0.019  Sum_probs=60.0

Q ss_pred             HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.+-+. .++... ..+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+
T Consensus       100 ~e~l~~l~~~Gv~risiGvqS~~~~~l-~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~  171 (360)
T TIGR00539       100 AEWCKGLKGAGINRLSLGVQSFRDDKL-LFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKE  171 (360)
T ss_pred             HHHHHHHHHcCCCEEEEecccCChHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHH
Confidence            45788889999999999874 444322 234432  2245555778999999996 665555  566655   4678888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      .++.+.+.|++.|.+
T Consensus       172 ~l~~~~~l~~~~is~  186 (360)
T TIGR00539       172 ELKLAKELPINHLSA  186 (360)
T ss_pred             HHHHHHccCCCEEEe
Confidence            889999999988865

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>cd00423 Pterin_binding Pterin binding enzymes

Probab=95.14  E-value=3.4  Score=40.81  Aligned_cols=136  Identities=21%  Similarity=0.244  Sum_probs=75.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHH----HHHHhccC-CceeEEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVM----EAVRDLEG-ARLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~----~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.+..++.++.+.+.|.+.|++|..++ |...|  -+.++.+    ..++.+.. .+++.-+-..             
T Consensus        20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~--~~~~~E~~rl~~~v~~l~~~~~~piSIDT~-------------   84 (258)
T cd00423          20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEP--VSVEEELERVIPVLRALAGEPDVPISVDTF-------------   84 (258)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc--CCHHHHHHHHHHHHHHHHhcCCCeEEEeCC-------------
Confidence            46889999999999999999999996543 32111  1222223    33333321 1222111111             


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                                 ..+-+++|++.|++.|.=....+.               +  .++++.+++.|..+.  +++.-+.+..
T Consensus        85 -----------~~~v~~aaL~~g~~iINdis~~~~---------------~--~~~~~l~~~~~~~vV--~m~~~~~~~~  134 (258)
T cd00423          85 -----------NAEVAEAALKAGADIINDVSGGRG---------------D--PEMAPLAAEYGAPVV--LMHMDGTPQT  134 (258)
T ss_pred             -----------cHHHHHHHHHhCCCEEEeCCCCCC---------------C--hHHHHHHHHcCCCEE--EECcCCCCcc
Confidence                       124678899999775543222110               0  244567778887765  3432111110


Q ss_pred             C------CCC----HHHHHHHHHHHHHCCc--CEEEEcCC
Q 012949          298 G------AIP----PSKVAYVAKELHDMGC--FEISLGDT  325 (452)
Q Consensus       298 ~------r~d----~e~l~~~a~~l~~~Ga--d~I~L~DT  325 (452)
                      .      ...    .+++.+.++.+.++|+  +.|.+ |.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Iil-DP  173 (258)
T cd00423         135 MQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIIL-DP  173 (258)
T ss_pred             cccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eC
Confidence            0      001    3567777888889995  46666 64

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=95.10  E-value=2.3  Score=41.85  Aligned_cols=201  Identities=17%  Similarity=0.184  Sum_probs=115.1

Q ss_pred             HHHHHHHHCCCCEEEEecCC--CCCccccc--CCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSFV--SPKWVPQL--ADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~--s~~~~p~~--~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      --++.+.++|++.|=+|+..  .....|-.  .+.++++..++.+.. +.+++.+ ...      .+|... .++     
T Consensus        20 ~sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~-D~~------~G~g~~-~~~-----   86 (243)
T cd00377          20 LSARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIA-DAD------TGYGNA-LNV-----   86 (243)
T ss_pred             HHHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEE-EcC------CCCCCH-HHH-----
Confidence            34677888899999998642  11122322  345777887776533 3344332 111      234422 111     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~---~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                         .+.++...++|+.-|.|-....+-..   ..+.=.+.++..++++.+++.++.. .+.|.+-. .++   ..+....
T Consensus        87 ---~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiART-Da~---~~~~~~~  159 (243)
T cd00377          87 ---ARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIART-DAL---LAGEEGL  159 (243)
T ss_pred             ---HHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEc-Cch---hccCCCH
Confidence               23677888899999999766543211   1112347899999987777766664 33222110 001   0111457


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +...+-++...++|||.|.+.   |..+++++.++.+    +.+ .||-+.......  .-+.-.--+.|+++|-.....
T Consensus       160 ~eai~Ra~ay~~AGAD~v~v~---~~~~~~~~~~~~~----~~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~~~  229 (243)
T cd00377         160 DEAIERAKAYAEAGADGIFVE---GLKDPEEIRAFAE----APD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGLAL  229 (243)
T ss_pred             HHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHh----cCC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEEChHH
Confidence            888889999999999999985   2336655555544    444 467676544432  122333345788887655543

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.09  E-value=4.1  Score=40.76  Aligned_cols=183  Identities=14%  Similarity=0.150  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.++..++|+.|.++|+..+-.+++-   +|.-.-.+  .++-++.+++. ....+.+++--..                
T Consensus        39 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~--g~~gl~~l~~~~~~~Gl~~~te~~d----------------  100 (266)
T PRK13398         39 SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGL--GEEGLKILKEVGDKYNLPVVTEVMD----------------  100 (266)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCc--HHHHHHHHHHHHHHcCCCEEEeeCC----------------
Confidence            78999999999999999999999752   32211111  13333444432 2233444432111                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              ...++.+.+. ++.+.|......                + .++++++-+.|.+|.  |+.    .  ...+
T Consensus       101 --------~~~~~~l~~~-vd~~kIga~~~~----------------n-~~LL~~~a~~gkPV~--lk~----G--~~~s  146 (266)
T PRK13398        101 --------TRDVEEVADY-ADMLQIGSRNMQ----------------N-FELLKEVGKTKKPIL--LKR----G--MSAT  146 (266)
T ss_pred             --------hhhHHHHHHh-CCEEEECccccc----------------C-HHHHHHHhcCCCcEE--EeC----C--CCCC
Confidence                    1366777776 787777543211                1 134455667788876  332    1  1237


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCc---CCCc-HHHHH-HHHHHHHHhCCCccEEE-EeCCC--cCcHHHHHHHHHHcCC
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTI---GVGT-PGTVV-PMLEAVMAVVPVEKLAV-HLHDT--YGQSLPNILISLQMGI  373 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~---G~~~-P~~v~-~li~~l~~~~p~~~l~v-H~Hnd--~GlA~ANaLaAl~aGa  373 (452)
                      ++.+...++.+...|-..+.|+..-   .... +..+. ..+..+++.++ .+|.+ =.|-.  .-+..+-+++|+.+||
T Consensus       147 ~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga  225 (266)
T PRK13398        147 LEEWLYAAEYIMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGA  225 (266)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCC
Confidence            8888888999999998877777641   1123 33322 23555555554 47888 45543  2355788999999999


Q ss_pred             C--EEeeccc
Q 012949          374 S--TVDCSVA  381 (452)
Q Consensus       374 ~--~VD~Sv~  381 (452)
                      +  .|+.-+.
T Consensus       226 ~Gl~iE~H~~  235 (266)
T PRK13398        226 DGLMIEVHPE  235 (266)
T ss_pred             CEEEEeccCC
Confidence            9  7765544

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=95.09  E-value=0.81  Score=45.96  Aligned_cols=149  Identities=21%  Similarity=0.251  Sum_probs=97.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCC---cccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhc
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK---WVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~---~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ...++.++-.++|+...+.|++++-+++-..-.   ...+  -+.+.++.|++. +++++-+|+|....           
T Consensus        94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G-----------  160 (306)
T COG0320          94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRG-----------  160 (306)
T ss_pred             CCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccC-----------
Confidence            346888999999999999999999999743221   1111  125567777754 67889999987651           


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeeecC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVVGC  294 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~g~  294 (452)
                                 ....++..++++.+.+.=-+ .+--.+-+...+-+.+.+|..    .+.+|+.+  +..--.||.-.| 
T Consensus       161 -----------~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~----L~~~k~~~P~i~TKSgiMlGLG-  224 (306)
T COG0320         161 -----------NDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSL----LERAKELGPDIPTKSGLMVGLG-  224 (306)
T ss_pred             -----------CHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHH----HHHHHHhCCCcccccceeeecC-
Confidence                       23467777788876432111 111111122346677777754    48888887  434445654332 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEEEcC
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEISLGD  324 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D  324 (452)
                           -+.+.+.+..+-+.++|+|.+.|.-
T Consensus       225 -----Et~~Ev~e~m~DLr~~gvdilTiGQ  249 (306)
T COG0320         225 -----ETDEEVIEVMDDLRSAGVDILTIGQ  249 (306)
T ss_pred             -----CcHHHHHHHHHHHHHcCCCEEEecc
Confidence                 2468899999999999999998753

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=95.03  E-value=0.99  Score=46.78  Aligned_cols=178  Identities=13%  Similarity=0.090  Sum_probs=106.2

Q ss_pred             hHHHHHHcCCCEEEEEe--cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE-EeeecCCCCCC-----CCHH
Q 012949          232 GFEAAIAAGAKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV-SCVVGCPVEGA-----IPPS  303 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~--s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l-~~~~g~p~~~r-----~d~e  303 (452)
                      .++.+++.|.|-|-+.+  ...+.. .     -.++.++.+.++.+.|++.|+++.+-+ ++..+..+...     .+|+
T Consensus       111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~  184 (340)
T PRK12858        111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE  184 (340)
T ss_pred             cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence            57889999999665543  332110 0     023567888999999999999987543 44433222222     5688


Q ss_pred             HHHHHHHHHHH--CCcCEEEEcCCc------C------CCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHH
Q 012949          304 KVAYVAKELHD--MGCFEISLGDTI------G------VGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILIS  368 (452)
Q Consensus       304 ~l~~~a~~l~~--~Gad~I~L~DT~------G------~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaA  368 (452)
                      .+...++.+.+  +|+|.+-+.=+.      |      +.+-.+..+.++.+.+..|. |+-+ =.--+...-+.....|
T Consensus       185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A  263 (340)
T PRK12858        185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFA  263 (340)
T ss_pred             HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHH
Confidence            99999999995  999988884432      1      11445555666666665543 3333 3333555677788889


Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCc-----ccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHH
Q 012949          369 LQMGISTVDCSVAGLGGCPYAKGASGN-----VATEDVVYMLSGLGVETNVDLRKLMLAGDFINK  428 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGecP~a~graGN-----aalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~  428 (452)
                      +++|+.. .+-+.|  .   +-+..++     ...+.....|+..|+      ++|.++.+.+.+
T Consensus       264 ~~aGa~f-~Gvl~G--R---niwq~~v~~~~~~~~~~~~~~l~~~g~------~~~~~l~~v~~~  316 (340)
T PRK12858        264 CEAGADF-SGVLCG--R---ATWQDGIEPYAAEGEEARRAWLNTEGV------ANITRLNEVLER  316 (340)
T ss_pred             HHcCCCc-cchhhh--H---HHHhhhhccccCCCHHHHHHHHHHHhH------HHHHHHHHHHHH
Confidence            9999841 122221  1   0000222     235556666776654      455556666654

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.03  E-value=2.6  Score=39.85  Aligned_cols=156  Identities=20%  Similarity=0.230  Sum_probs=98.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +.++-.++++.+.+.|++.||+..-.        .+..+.++.+++... +...+-+.                      
T Consensus        22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~--------~~~~e~~~~~~~~~~~~~~g~gtv----------------------   71 (187)
T PRK07455         22 DLELGLQMAEAVAAGGMRLIEITWNS--------DQPAELISQLREKLPECIIGTGTI----------------------   71 (187)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC--------CCHHHHHHHHHHhCCCcEEeEEEE----------------------
Confidence            78889999999999999999998632        134566666665422 21211110                      


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                         ...++++.|+++|++.|+.-.-.                    .+.++.++..++...      .|     -.+++.
T Consensus        72 ---l~~d~~~~A~~~gAdgv~~p~~~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e  117 (187)
T PRK07455         72 ---LTLEDLEEAIAAGAQFCFTPHVD--------------------PELIEAAVAQDIPII------PG-----ALTPTE  117 (187)
T ss_pred             ---EcHHHHHHHHHcCCCEEECCCCC--------------------HHHHHHHHHcCCCEE------cC-----cCCHHH
Confidence               01248999999999999765321                    134466777777532      33     234554


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.    .+.++|+|.|.+=-|.-..-    .+.++.++..+|.+|+-.    .=|.-..|.-.-+++|++.|=
T Consensus       118 ~~----~A~~~Gadyv~~Fpt~~~~G----~~~l~~~~~~~~~ipvva----iGGI~~~n~~~~l~aGa~~va  178 (187)
T PRK07455        118 IV----TAWQAGASCVKVFPVQAVGG----ADYIKSLQGPLGHIPLIP----TGGVTLENAQAFIQAGAIAVG  178 (187)
T ss_pred             HH----HHHHCCCCEEEECcCCcccC----HHHHHHHHhhCCCCcEEE----eCCCCHHHHHHHHHCCCeEEE
Confidence            43    34468999988833311111    355677777666544433    236777999999999998653

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=95.00  E-value=1.7  Score=39.63  Aligned_cols=86  Identities=19%  Similarity=0.149  Sum_probs=59.0

Q ss_pred             HhHHHHHHcCCCEEEEEecC-ChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASA-SEAFSK-SNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      +.++...+.|.+.|.+..-. ++...+ .+-+.+    ++.+.+.++.+++.| +.+...+..  |-+   ..+.+.+.+
T Consensus       101 ~~~~~l~~~~~~~i~isl~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~g~~~v~~~~~~--g~~---~~~~~~~~~  171 (216)
T smart00729      101 ELLEALKEAGVNRVSLGVQSGSDEVLKAINRGHT----VEDVLEAVEKLREAGPIKVSTDLIV--GLP---GETEEDFEE  171 (216)
T ss_pred             HHHHHHHHcCCCeEEEecccCCHHHHHHhcCCCC----HHHHHHHHHHHHHhCCcceEEeEEe--cCC---CCCHHHHHH
Confidence            47888899999988887653 332222 222333    466677889999999 777765653  323   235788999


Q ss_pred             HHHHHHHCCcCEEEEcCC
Q 012949          308 VAKELHDMGCFEISLGDT  325 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT  325 (452)
                      +++.+.+.|++.|.+..-
T Consensus       172 ~~~~~~~~~~~~i~~~~~  189 (216)
T smart00729      172 TLKLLKELGPDRVSIFPL  189 (216)
T ss_pred             HHHHHHHcCCCeEEeeee
Confidence            999999999998776443

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=95.00  E-value=2.5  Score=41.25  Aligned_cols=177  Identities=18%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ...-.+-++.+.++|++.|=+-..- -.|+|.++=-.++++.+++.+...+-+  |+-+.                    
T Consensus        15 ~~~l~~el~~~~~agad~iH~DVMD-ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p--------------------   73 (220)
T COG0036          15 FARLGEELKALEAAGADLIHIDVMD-GHFVPNITFGPPVVKALRKITDLPLDVHLMVENP--------------------   73 (220)
T ss_pred             HhHHHHHHHHHHHcCCCEEEEeccC-CCcCCCcccCHHHHHHHhhcCCCceEEEEecCCH--------------------
Confidence            3344566778888999977763211 014465543356788888754444333  22111                    


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                           .+-++.-+++|++.|.+-.-                +-+.+.++++++|++|.++.+.+.     |.   ++.+.
T Consensus        74 -----~~~i~~fa~agad~It~H~E----------------~~~~~~r~i~~Ik~~G~kaGv~ln-----P~---Tp~~~  124 (220)
T COG0036          74 -----DRYIEAFAKAGADIITFHAE----------------ATEHIHRTIQLIKELGVKAGLVLN-----PA---TPLEA  124 (220)
T ss_pred             -----HHHHHHHHHhCCCEEEEEec----------------cCcCHHHHHHHHHHcCCeEEEEEC-----CC---CCHHH
Confidence                 12677788999998887653                224456788999999998874443     32   35566


Q ss_pred             HHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE-eec
Q 012949          305 VAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV-DCS  379 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V-D~S  379 (452)
                      +..+...     +|.|-+    +.--|..--..+-+-|+.+++..+... .+-.-=|=|.-..|+-.+.+|||+.+ -+|
T Consensus       125 i~~~l~~-----vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS  198 (220)
T COG0036         125 LEPVLDD-----VDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS  198 (220)
T ss_pred             HHHHHhh-----CCEEEEEeECCCCcccccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence            6666653     344433    344555555677777888888776421 23333478999999999999999955 444

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=94.98  E-value=2.1  Score=44.65  Aligned_cols=179  Identities=17%  Similarity=0.182  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.++.+++|+.|.+.|+..+--|++-   +|.-.-.+.  ++-+..+++. ....+.+++.-.                 
T Consensus       130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~--~e~l~~L~~~~~~~Gl~~~t~v~-----------------  190 (360)
T PRK12595        130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG--VEGLKILKQVADEYGLAVISEIV-----------------  190 (360)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCC--HHHHHHHHHHHHHcCCCEEEeeC-----------------
Confidence            67889999999999999999988763   332111111  1223333321 223334443211                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-C
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-I  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~  300 (452)
                             ..++++.+.+. ++.+.|...  +.              .+ .++++++.+.|.+|.  |+.       +. .
T Consensus       191 -------d~~~~~~l~~~-vd~lkI~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~  236 (360)
T PRK12595        191 -------NPADVEVALDY-VDVIQIGAR--NM--------------QN-FELLKAAGRVNKPVL--LKR-------GLSA  236 (360)
T ss_pred             -------CHHHHHHHHHh-CCeEEECcc--cc--------------cC-HHHHHHHHccCCcEE--EeC-------CCCC
Confidence                   12377888888 888777543  21              11 255677777898876  332       33 5


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC-C-cCCCcH--H--HHHHHHHHHHHhCCCccEEE-EeCCCcC---cHHHHHHHHHH
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD-T-IGVGTP--G--TVVPMLEAVMAVVPVEKLAV-HLHDTYG---QSLPNILISLQ  370 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D-T-~G~~~P--~--~v~~li~~l~~~~p~~~l~v-H~Hnd~G---lA~ANaLaAl~  370 (452)
                      +++.+...++.+...|.+.|.|+. . ..+-+|  .  .+. .|..+++.++ .|+++ =.|- .|   +..+-+++|+.
T Consensus       237 t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~-~i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva  313 (360)
T PRK12595        237 TIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDIS-AVPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALA  313 (360)
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHH-HHHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHH
Confidence            789999999999999998899987 2 222112  1  222 3556676664 46778 3443 55   67779999999


Q ss_pred             cCCC--EEeecc
Q 012949          371 MGIS--TVDCSV  380 (452)
Q Consensus       371 aGa~--~VD~Sv  380 (452)
                      +||+  .|+.=.
T Consensus       314 ~GAdg~~iE~H~  325 (360)
T PRK12595        314 IGADGVMAEVHP  325 (360)
T ss_pred             cCCCeEEEEecC
Confidence            9996  666554

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=94.97  E-value=1.7  Score=43.28  Aligned_cols=166  Identities=15%  Similarity=0.197  Sum_probs=97.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      +..+..++++...+.|.+.|-+=  .-+++..  .+. +.+..+++.  +.++++....          .-         
T Consensus        68 ~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~-~~l~~v~~~--v~iPvl~kdf----------i~---------  121 (260)
T PRK00278         68 EDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSL-EYLRAARAA--VSLPVLRKDF----------II---------  121 (260)
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCH-HHHHHHHHh--cCCCEEeeee----------cC---------
Confidence            34466899999999999998662  1222222  122 345555543  2455554221          00         


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                         ..-.++.+.++|+|.|.+-...=+              .+.+.+++++++++|+.+.+.+.           +.+.+
T Consensus       122 ---~~~qi~~a~~~GAD~VlLi~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~  173 (260)
T PRK00278        122 ---DPYQIYEARAAGADAILLIVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL  173 (260)
T ss_pred             ---CHHHHHHHHHcCCCEEEEEeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH
Confidence               112688999999999999876411              15677889999999998763332           23333


Q ss_pred             HHHHHHHHHCCcCEEEEcC-CcCCCcHHHHHHHHHHHHHhCCCc-c-EE-EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          306 AYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLEAVMAVVPVE-K-LA-VHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~-~-l~-vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                          +.+.++|++.|.+.. ......|.  .+.+..+.+.+|.. + |. -..+     ...++..++++|++.|
T Consensus       174 ----~~A~~~gadiIgin~rdl~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v  237 (260)
T PRK00278        174 ----ERALKLGAPLIGINNRNLKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV  237 (260)
T ss_pred             ----HHHHHcCCCEEEECCCCcccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence                446678999999864 01112222  22334444545531 2 22 1222     3567788889999866

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.97  E-value=1.4  Score=44.61  Aligned_cols=142  Identities=16%  Similarity=0.079  Sum_probs=88.2

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~  297 (452)
                      +..++|.++|.|.|.|-..-        |+.  +....+|-+.++-.+.+.++++.+|+.   ++.+.+-++...  ...
T Consensus       145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~--~~~  222 (327)
T cd02803         145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD--FVP  222 (327)
T ss_pred             HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc--cCC
Confidence            35667788999998886531        332  223346777887777788888888874   344443343211  011


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc----------HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT----------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~----------P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      +..+++...++++.+.++|+|.|.+......-.          +..-.++++.+++.++. +|..-.--+   ....+..
T Consensus       223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi~---t~~~a~~  298 (327)
T cd02803         223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI-PVIAVGGIR---DPEVAEE  298 (327)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC-CEEEeCCCC---CHHHHHH
Confidence            235788899999999999999998755332211          12334677888887753 454432111   2466777


Q ss_pred             HHHc-CCCEEee
Q 012949          368 SLQM-GISTVDC  378 (452)
Q Consensus       368 Al~a-Ga~~VD~  378 (452)
                      +++. |||.|-.
T Consensus       299 ~l~~g~aD~V~i  310 (327)
T cd02803         299 ILAEGKADLVAL  310 (327)
T ss_pred             HHHCCCCCeeee
Confidence            8887 6776643

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.97  E-value=3.6  Score=39.42  Aligned_cols=191  Identities=13%  Similarity=0.050  Sum_probs=104.7

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      +|+.+.+.-.+. .|.-.    -+.++..++++...+.|...++++.             .+.++.+++..+.  +.+..
T Consensus         3 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~a~a~~~~G~~~~~~~~-------------~~~i~~i~~~~~~--Pil~~   62 (221)
T PRK01130          3 LKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANG-------------VEDIKAIRAVVDV--PIIGI   62 (221)
T ss_pred             cCCCEEEEecCC-CCCCC----CCHHHHHHHHHHHHHCCCeEEEcCC-------------HHHHHHHHHhCCC--CEEEE
Confidence            444555554444 32221    3567889999999999999999842             1345666654333  32211


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LS  281 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G  281 (452)
                      ..+ +.        +..+++   .....+.++.++++|++.|-+-.+..+..    .+       +.+.++++.+++ .+
T Consensus        63 ~~~-d~--------~~~~~~---~~~~~~~v~~a~~aGad~I~~d~~~~~~p----~~-------~~~~~~i~~~~~~~~  119 (221)
T PRK01130         63 IKR-DY--------PDSEVY---ITPTLKEVDALAAAGADIIALDATLRPRP----DG-------ETLAELVKRIKEYPG  119 (221)
T ss_pred             Eec-CC--------CCCCce---ECCCHHHHHHHHHcCCCEEEEeCCCCCCC----CC-------CCHHHHHHHHHhCCC
Confidence            111 00        000000   00123478999999999666544321100    00       223467788888 77


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      +.+.+.        .   .+++.    ++.+.++|+|.|.+.  +..+.  .....-.++++.+++.+. +++-.    .
T Consensus       120 i~vi~~--------v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~  179 (221)
T PRK01130        120 QLLMAD--------C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----E  179 (221)
T ss_pred             CeEEEe--------C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----E
Confidence            775421        1   13444    356788999988652  11111  011122457777777653 34443    5


Q ss_pred             cCcH-HHHHHHHHHcCCCEE
Q 012949          358 YGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       358 ~GlA-~ANaLaAl~aGa~~V  376 (452)
                      .|.. ..++..++++||+.|
T Consensus       180 GGI~t~~~~~~~l~~GadgV  199 (221)
T PRK01130        180 GRINTPEQAKKALELGAHAV  199 (221)
T ss_pred             CCCCCHHHHHHHHHCCCCEE
Confidence            6774 678888899998865

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=94.93  E-value=2.3  Score=42.94  Aligned_cols=132  Identities=15%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A-k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ..++.+++.|+..+.+......   ....+.+.++.++.+.+.++.+ ++.|+.+...++..      ...+++.+.+..
T Consensus        77 ~~~~e~~~~Gvt~~E~~~~p~~---~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~  147 (325)
T cd01320          77 EYLEDAAADGVVYAEIRFSPQL---HTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETL  147 (325)
T ss_pred             HHHHHHHHcCCEEEEEEeCchh---hccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHH
Confidence            4677788899987766544211   1245778899999887877666 45788776444321      112456666666


Q ss_pred             HHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCE
Q 012949          310 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGIST  375 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~  375 (452)
                      +.+.+++.+.+.=.|..|   ..+++.+..+++..++.  +.++.+|+..+.+  ..+...|++ +|+++
T Consensus       148 ~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~  213 (325)
T cd01320         148 ELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER  213 (325)
T ss_pred             HHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence            666555444222223322   33677788887777664  4568888876643  334556776 78764

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=94.92  E-value=0.24  Score=53.45  Aligned_cols=77  Identities=21%  Similarity=0.135  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +...+.++.+.+.|++.|.+ |++= ..|..+.++|+.+++.+|+.++-.    +.+.-...+..++++||+.|++.+.|
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~  297 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP  297 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence            35567888899999999988 8887 788999999999999998876666    66777788899999999999977665


Q ss_pred             CCC
Q 012949          383 LGG  385 (452)
Q Consensus       383 lGe  385 (452)
                      =.-
T Consensus       298 Gs~  300 (475)
T TIGR01303       298 GAM  300 (475)
T ss_pred             Ccc
Confidence            333

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal

Probab=94.84  E-value=2.1  Score=42.91  Aligned_cols=137  Identities=15%  Similarity=0.160  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.++..++++.+.+.|++.|-++. .-|    -+ .+..++++.+++. +. .+...+.+..                
T Consensus        39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEP----ll~~~l~~iv~~l~~~-g~~~v~i~TNG~l----------------   96 (302)
T TIGR02668        39 ELSPEEIERIVRVASEFGVRKVKITG-GEP----LLRKDLIEIIRRIKDY-GIKDVSMTTNGIL----------------   96 (302)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEC-ccc----ccccCHHHHHHHHHhC-CCceEEEEcCchH----------------
Confidence            58899999999999999999988854 222    22 2445566666543 33 3333332211                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGA  299 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r  299 (452)
                             ..+.++...++|++.|.|.+-. ++...+...+   ...++++.+.++.+++.|+. +.+++...   +  + 
T Consensus        97 -------l~~~~~~l~~~g~~~v~iSld~~~~~~~~~i~~---~~~~~~vl~~i~~~~~~G~~~v~i~~v~~---~--g-  160 (302)
T TIGR02668        97 -------LEKLAKKLKEAGLDRVNVSLDTLDPEKYKKITG---RGALDRVIEGIESAVDAGLTPVKLNMVVL---K--G-  160 (302)
T ss_pred             -------HHHHHHHHHHCCCCEEEEEecCCCHHHhhhccC---CCcHHHHHHHHHHHHHcCCCcEEEEEEEe---C--C-
Confidence                   0125566778999999987643 4322222122   23566667778888999986 66443321   1  1 


Q ss_pred             CCHHHHHHHHHHHHHCCcC
Q 012949          300 IPPSKVAYVAKELHDMGCF  318 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad  318 (452)
                      .+.+.+.++++.+.+.|++
T Consensus       161 ~n~~ei~~~~~~~~~~g~~  179 (302)
T TIGR02668       161 INDNEIPDMVEFAAEGGAI  179 (302)
T ss_pred             CCHHHHHHHHHHHHhcCCE
Confidence            3567788899999999986

This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=94.80  E-value=2.8  Score=43.69  Aligned_cols=181  Identities=12%  Similarity=0.123  Sum_probs=111.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      =+.++.+++|+.|.+.|++.+--|+|-   +|.-.-.+.  ++-++.+++. ....+.+++--.                
T Consensus       112 Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~----------------  173 (352)
T PRK13396        112 ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVM----------------  173 (352)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeC----------------
Confidence            367889999999999999999988763   343111121  3444444432 223344443211                


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                              ..++++.+.+. +|.+.|....-                .+ .++++++-+.|.+|-  |+.       +..
T Consensus       174 --------d~~~v~~~~~~-~d~lqIga~~~----------------~n-~~LL~~va~t~kPVl--lk~-------G~~  218 (352)
T PRK13396        174 --------DAADLEKIAEV-ADVIQVGARNM----------------QN-FSLLKKVGAQDKPVL--LKR-------GMA  218 (352)
T ss_pred             --------CHHHHHHHHhh-CCeEEECcccc----------------cC-HHHHHHHHccCCeEE--EeC-------CCC
Confidence                    12477777776 78888764311                11 244566667788875  432       233


Q ss_pred             -CHHHHHHHHHHHHHCCcCEEEEcCC-----c-CCCcHHHH--HHHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHH
Q 012949          301 -PPSKVAYVAKELHDMGCFEISLGDT-----I-GVGTPGTV--VPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILIS  368 (452)
Q Consensus       301 -d~e~l~~~a~~l~~~Gad~I~L~DT-----~-G~~~P~~v--~~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaA  368 (452)
                       +++.+...++.+...|-..|.|+..     . ++  |...  -..|..+++.+. .|+-+   |.=-...+..+.+++|
T Consensus       219 ~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y--~~~~~dl~ai~~lk~~~~-lPVi~DpsH~~G~sd~~~~~a~AA  295 (352)
T PRK13396        219 ATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQY--TRNTLDLSVIPVLRSLTH-LPIMIDPSHGTGKSEYVPSMAMAA  295 (352)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCC--CCCCcCHHHHHHHHHhhC-CCEEECCcccCCcHHHHHHHHHHH
Confidence             7899999999999999988888875     3 22  2222  122555666543 34523   3334444566899999


Q ss_pred             HHcCCC--EEeeccc
Q 012949          369 LQMGIS--TVDCSVA  381 (452)
Q Consensus       369 l~aGa~--~VD~Sv~  381 (452)
                      +.+||+  .|+.=..
T Consensus       296 va~GAdGliIE~H~~  310 (352)
T PRK13396        296 IAAGTDSLMIEVHPN  310 (352)
T ss_pred             HhhCCCeEEEEecCC
Confidence            999999  7776554

>PRK09249 coproporphyrinogen III oxidase; Provisional

Probab=94.76  E-value=1.8  Score=46.25  Aligned_cols=87  Identities=14%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.|-+ +.++-.. ..+|+.  ...+.+.++++.+++.|+ .|.+.++  +|.|..   +.+.+.+
T Consensus       151 ~e~l~~l~~aG~~risiGvqS~~~~~L-~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~  222 (453)
T PRK09249        151 LEMLDALRELGFNRLSLGVQDFDPEVQ-KAVNRI--QPFEFTFALVEAARELGFTSINIDLI--YGLPKQ---TPESFAR  222 (453)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--ccCCCC---CHHHHHH
Confidence            4578888899999998876 4444322 233332  234455577799999998 5766666  566655   4688888


Q ss_pred             HHHHHHHCCcCEEEEcC
Q 012949          308 VAKELHDMGCFEISLGD  324 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~D  324 (452)
                      .++.+.+.|++.|.+-.
T Consensus       223 ~l~~~~~l~~~~i~~y~  239 (453)
T PRK09249        223 TLEKVLELRPDRLAVFN  239 (453)
T ss_pred             HHHHHHhcCCCEEEEcc
Confidence            99999999999887764

>PRK13347 coproporphyrinogen III oxidase; Provisional

Probab=94.71  E-value=1.3  Score=47.47  Aligned_cols=88  Identities=9%  Similarity=0.001  Sum_probs=63.3

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.|-+..-+-.....+|+.  ...+.+.++++.+++.|++ |.+.++  +|.|..   +.+.+.+.
T Consensus       152 ~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dli--~GlPgq---t~e~~~~t  224 (453)
T PRK13347        152 AEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLRAAGFESINFDLI--YGLPHQ---TVESFRET  224 (453)
T ss_pred             HHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--EeCCCC---CHHHHHHH
Confidence            457888999999999887644333333344442  2345556778999999997 666666  566654   57888899


Q ss_pred             HHHHHHCCcCEEEEcC
Q 012949          309 AKELHDMGCFEISLGD  324 (452)
Q Consensus       309 a~~l~~~Gad~I~L~D  324 (452)
                      ++.+.+.|++.|.+-.
T Consensus       225 l~~~~~l~p~~i~~y~  240 (453)
T PRK13347        225 LDKVIALSPDRIAVFG  240 (453)
T ss_pred             HHHHHhcCCCEEEEec
Confidence            9999999999887754

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=94.68  E-value=3.1  Score=41.88  Aligned_cols=200  Identities=16%  Similarity=0.123  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.+.-.++++.|.+.|++.|=+......  .+.+.+  ..++++.+.+..+-++++++- ..          ....+ 
T Consensus        22 ~iD~~~l~~li~~l~~~Gv~gi~v~GstGE--~~~Lt~eEr~~v~~~~~~~~~g~~pvi~g-v~----------~~t~~-   87 (296)
T TIGR03249        22 SFDEAAYRENIEWLLGYGLEALFAAGGTGE--FFSLTPAEYEQVVEIAVSTAKGKVPVYTG-VG----------GNTSD-   87 (296)
T ss_pred             CcCHHHHHHHHHHHHhcCCCEEEECCCCcC--cccCCHHHHHHHHHHHHHHhCCCCcEEEe-cC----------ccHHH-
Confidence            489999999999999999999887532221  123322  233333333222223333321 00          00111 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                             ..+-.+.|.+.|+|.+.+..+   .+    +..+.++.++-+..+.+.   .++++..|=   .   .....+
T Consensus        88 -------ai~~a~~a~~~Gadav~~~pP---~y----~~~s~~~i~~~f~~v~~a---~~~pvilYn---~---~g~~l~  144 (296)
T TIGR03249        88 -------AIEIARLAEKAGADGYLLLPP---YL----INGEQEGLYAHVEAVCES---TDLGVIVYQ---R---DNAVLN  144 (296)
T ss_pred             -------HHHHHHHHHHhCCCEEEECCC---CC----CCCCHHHHHHHHHHHHhc---cCCCEEEEe---C---CCCCCC
Confidence                   123567788899999877544   22    234556666655555443   456665432   1   122456


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ++.+.+++++    -...+.++|+.|  .+.++.++++    ..++ .+.+ -+|+.   +-...+.++.+|++   +.+
T Consensus       145 ~~~~~~La~~----~~nvvgiKds~~--d~~~~~~~~~----~~~~-~~~v~~G~~~---~d~~~~~~~~~Ga~---G~i  207 (296)
T TIGR03249       145 ADTLERLADR----CPNLVGFKDGIG--DMEQMIEITQ----RLGD-RLGYLGGMPT---AEVTAPAYLPLGVT---SYS  207 (296)
T ss_pred             HHHHHHHHhh----CCCEEEEEeCCC--CHHHHHHHHH----HcCC-CeEEEeCCCc---chhhHHHHHhCCCC---EEE
Confidence            7766666532    247899999866  5666666543    3343 3433 44421   11234556778984   455


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .|+          +|..-|.++...+.
T Consensus       208 s~~----------~n~~P~~~~~~~~~  224 (296)
T TIGR03249       208 SAI----------FNFIPHIARAFYEA  224 (296)
T ss_pred             ecH----------HHhhHHHHHHHHHH
Confidence            543          35555665555543

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=94.67  E-value=0.91  Score=49.19  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=71.5

Q ss_pred             HhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +-++...++|+..|.+-+ +.|+..++ .+|+..  ..+.+.++++.++++|+.+.++++  +|.|.+   +.+.+.+.+
T Consensus       288 ell~~l~~aG~~~v~iGiES~~~~~L~-~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~  359 (497)
T TIGR02026       288 DILHLYRRAGLVHISLGTEAAAQATLD-HFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETY  359 (497)
T ss_pred             HHHHHHHHhCCcEEEEccccCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHH
Confidence            356778889999888865 55554333 344432  344566788999999999876655  677776   468888888


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~  344 (452)
                      +.+.+.+++.+.+    ..++|..=-++.+.+++.
T Consensus       360 ~~~~~l~~~~~~~----~~~tP~PGT~l~~~~~~~  390 (497)
T TIGR02026       360 RQLLDWDPDQANW----LMYTPWPFTSLFGELSDR  390 (497)
T ss_pred             HHHHHcCCCceEE----EEecCCCCcHHHHHHHhh
Confidence            8899999988776    366776655666666554

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=94.67  E-value=2.3  Score=42.27  Aligned_cols=149  Identities=16%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ++.++.|...|++.|.+-.+..       ...+.+++++.+.+.++.+-+....|...|....+.+..--.+++.+.+++
T Consensus        91 ~~~i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll  163 (274)
T TIGR00587        91 DEELKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYII  163 (274)
T ss_pred             HHHHHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHH
Confidence            4578888899999766644321       122557777877777655443222255445543222111124778888887


Q ss_pred             HHHHHCCcCEEEEc-CCcCCC-------cHHHHHHHHHHHHHhCC-CccEEEEeCCCcC-cHHHHHHHHHHcCCCEEeec
Q 012949          310 KELHDMGCFEISLG-DTIGVG-------TPGTVVPMLEAVMAVVP-VEKLAVHLHDTYG-QSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~-DT~G~~-------~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~G-lA~ANaLaAl~aGa~~VD~S  379 (452)
                      +.+..  .+.+.++ ||.=..       +++.+.++++.+.+.++ +-...+|+||+.. .+         .|.| -+  
T Consensus       164 ~~~~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H--  229 (274)
T TIGR00587       164 KVIVD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH--  229 (274)
T ss_pred             HhcCC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC--
Confidence            76532  1333333 433221       26667778887776654 2236789998742 11         1111 12  


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                       ..+|        .|+.+.+.++..|+..
T Consensus       230 -~~iG--------~G~i~~~~~~~~L~~~  249 (274)
T TIGR00587       230 -ENIG--------EGIIGFDAFRLIMDDE  249 (274)
T ss_pred             -CCcC--------CccCCHHHHHHHHcCc
Confidence             2233        4789999999999763

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.65  E-value=1.2  Score=46.02  Aligned_cols=142  Identities=21%  Similarity=0.136  Sum_probs=88.5

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCCC-C
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV-E  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p~-~  297 (452)
                      +..++|.++|.|.|.|-..        .|+..++  ..+|-|.++=.+.+.++++.+|+. |. .|.+-++..-.-+. .
T Consensus       156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~  235 (338)
T cd02933         156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG  235 (338)
T ss_pred             HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence            3667788899999988543        2333222  235777887788888888888874 54 23332331100000 0


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                      .-.++++..++++.+.+.|+|.|.+..  +... .+....++++.+++.++..-+.....+     ...+..+++.| +|
T Consensus       236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D  309 (338)
T cd02933         236 DSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKAD  309 (338)
T ss_pred             CCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCC
Confidence            124678889999999999999998832  2221 133456777888888754223444442     67788999987 77


Q ss_pred             EEee
Q 012949          375 TVDC  378 (452)
Q Consensus       375 ~VD~  378 (452)
                      .|-.
T Consensus       310 ~V~~  313 (338)
T cd02933         310 LVAF  313 (338)
T ss_pred             EEEe
Confidence            6643

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]

Probab=94.62  E-value=2.7  Score=40.88  Aligned_cols=220  Identities=20%  Similarity=0.175  Sum_probs=114.4

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhcc---chhhhhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCH---ASVISSNLW  227 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~---~~~i~~~~~  227 (452)
                      ++++...++|++.+|+....   ..++- .+.+++.+.++. .++++..+.+.....+      ....   ...++.   
T Consensus        19 ~~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~------~~~~~~~~~~~~~---   85 (274)
T COG1082          19 EILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLL------SPDEEEREEALEE---   85 (274)
T ss_pred             HHHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcC------CCchhhHHHHHHH---
Confidence            45566677889999997511   11211 113444444443 3555555443322000      0000   001111   


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       .++.++.|.+.|++.|.++.+........ ......+...+.+.++.+.|++.|+.+.  +... .-+.....++.   
T Consensus        86 -~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~--~e~~-~~~~~~~~~~~---  158 (274)
T COG1082          86 -LKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLA--LENH-HHPGNVVETGA---  158 (274)
T ss_pred             -HHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceE--Eeec-CCccceeecCH---
Confidence             12366778889999888876543322110 1122336678888899999999987765  3220 00111111112   


Q ss_pred             HHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          307 YVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       307 ~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      +..+.+.+.+-+ .-.+-|+.=...-..  +.+..+++..+- -..+|+||..+-...    .+..+           +.
T Consensus       159 ~~~~~~~~~~~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~----~~~~~-----------~~  220 (274)
T COG1082         159 DALDLLREVDSPNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD----IVNFL-----------GQ  220 (274)
T ss_pred             HHHHHHHhcCCCceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc----ccCCC-----------cc
Confidence            233334444333 334447543333222  456666665553 478999999987655    11111           22


Q ss_pred             CCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          386 CPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       386 cP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                       ...+| -|..+..+++..|+..|++
T Consensus       221 -~~~pG-~G~id~~~i~~~L~~~gy~  244 (274)
T COG1082         221 -HLPPG-DGDIDFKAIFSALREAGYD  244 (274)
T ss_pred             -eeCCC-CCCcCHHHHHHHHHHcCCC
Confidence             33344 5889999999999987775

>PRK09358 adenosine deaminase; Provisional

Probab=94.62  E-value=3.1  Score=42.53  Aligned_cols=134  Identities=16%  Similarity=0.105  Sum_probs=78.7

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA-KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A-k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ...++.++..|+..+.++...  .+ -...|.+.++.++.+.+.++.| ++.|+.+...++..    .  ..+++...+.
T Consensus        84 ~~~~~e~~~~Gvty~E~~~~p--~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~  154 (340)
T PRK09358         84 FEYLEDAAADGVVYAEIRFDP--QL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAARE  154 (340)
T ss_pred             HHHHHHHHHcCCEEEEEEeCh--hh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHH
Confidence            346778888999888777542  21 1235788999999888877655 45787766443321    1  1234444444


Q ss_pred             HHHHHH--CCcCEE--EEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEE
Q 012949          309 AKELHD--MGCFEI--SLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTV  376 (452)
Q Consensus       309 a~~l~~--~Gad~I--~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~V  376 (452)
                      ++.+.+  .+-..+  .++-.-...+|+.+.+.++..++.  +.++.+|+....+  ..+...|++ .|++++
T Consensus       155 ~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri  223 (340)
T PRK09358        155 LEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI  223 (340)
T ss_pred             HHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence            444443  332233  343221224677777777776653  3567888876544  345566777 788764

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.55  E-value=0.76  Score=46.05  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE----------cCCcCCCcHH
Q 012949          263 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL----------GDTIGVGTPG  332 (452)
Q Consensus       263 ~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L----------~DT~G~~~P~  332 (452)
                      .++.++.+.+.   .++.+.++.+.|..         .+++.+.+.++.+.++|+|.|.|          .+..| ..|.
T Consensus        74 ~~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~  140 (296)
T cd04740          74 VEAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPE  140 (296)
T ss_pred             HHHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHH
Confidence            44555544332   23356666655541         35788999999999999998877          23333 4789


Q ss_pred             HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          333 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       333 ~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .+.++++.+++.+ +.+|.+-.--+..-...-+..+.++||+.|+.
T Consensus       141 ~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         141 AVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             HHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            9999999999986 35777776544433444556678899998754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase

Probab=94.53  E-value=2.9  Score=44.76  Aligned_cols=108  Identities=8%  Similarity=0.084  Sum_probs=72.5

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.|-+ +.++- ....+|+.  ...+.+.++++.+++.|++ |.+.++  +|.|..   +.+.+.+
T Consensus       151 ~e~l~~lk~~G~~risiGvqS~~~~-~l~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~  222 (455)
T TIGR00538       151 KDVIDALRDEGFNRLSFGVQDFNKE-VQQAVNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAK  222 (455)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCCCHH-HHHHhCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHH
Confidence            4578889999999999876 34432 22334442  2245566788999999996 665565  566654   5788888


Q ss_pred             HHHHHHHCCcCEEEEcCC---------------cCCCcHHHHHHHHHHHHHhC
Q 012949          308 VAKELHDMGCFEISLGDT---------------IGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT---------------~G~~~P~~v~~li~~l~~~~  345 (452)
                      .++.+.+.|++.|.+-.-               ....++++..+++..+.+.+
T Consensus       223 tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L  275 (455)
T TIGR00538       223 TLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFL  275 (455)
T ss_pred             HHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHH
Confidence            999999999998876432               11235666666666665543

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=94.53  E-value=3.1  Score=39.56  Aligned_cols=141  Identities=22%  Similarity=0.177  Sum_probs=84.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++.+.+.+++-|-+.    +            ..++.+   .+..+..++.+.+.+    ++|... .+.+....-++.
T Consensus        22 ~~~~a~~~~~~av~v~----p------------~~v~~~---~~~l~~~~~~v~~~~----~fp~g~-~~~~~k~~eve~   77 (203)
T cd00959          22 LCDEAKEYGFAAVCVN----P------------CFVPLA---REALKGSGVKVCTVI----GFPLGA-TTTEVKVAEARE   77 (203)
T ss_pred             HHHHHHHcCCCEEEEc----H------------HHHHHH---HHHcCCCCcEEEEEE----ecCCCC-CcHHHHHHHHHH
Confidence            5677777888877754    1            122222   222333444444333    445544 455666666888


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc----HHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ----SLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl----A~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.++|||.|.+.=-.|..   .-..+.+.+..+++...+.++-+ ...+-.+    =.-.+..|+++|||+|=++ .|.+
T Consensus        78 A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~  155 (203)
T cd00959          78 AIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-ILETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG  155 (203)
T ss_pred             HHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-EEecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC
Confidence            899999999887777743   33567777888887755444322 1222222    2234677899999999999 4543


Q ss_pred             CCCCCCCCCCcccHHHHHHHHH
Q 012949          385 GCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~  406 (452)
                              ++++.+|++-.+.+
T Consensus       156 --------~~~at~~~v~~~~~  169 (203)
T cd00959         156 --------PGGATVEDVKLMKE  169 (203)
T ss_pred             --------CCCCCHHHHHHHHH
Confidence                    24577776555444

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein

Probab=94.53  E-value=3  Score=42.74  Aligned_cols=167  Identities=13%  Similarity=0.035  Sum_probs=98.9

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccC---CHHHHHHHHHhccCCce-eEEecchhhhhhhhhhhhhcc
Q 012949          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLA---DARDVMEAVRDLEGARL-PVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~---D~e~v~~~i~~~~~~~l-~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      .++.++..++++.|.+ .||..|-++..     -|-+.   +..++++.++.+..++. ...++..        ...+. 
T Consensus       118 ~l~~~e~~~~i~~i~~~~~I~~VilSGG-----DPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~--------v~~p~-  183 (321)
T TIGR03822       118 VLSPAELDAAFAYIADHPEIWEVILTGG-----DPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVP--------VADPA-  183 (321)
T ss_pred             cCCHHHHHHHHHHHHhCCCccEEEEeCC-----CcccCCHHHHHHHHHHHHhCCCccEEEEeCCCc--------ccChh-
Confidence            3677888888888875 48987777532     12222   23455556655433221 1111100        00000 


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                              ..+.+-++.+.++|.. +.|.+..+..          .+..+.+.++++.+++.|+.+.......-|    -
T Consensus       184 --------rit~ell~~L~~~g~~-v~i~l~~~h~----------~el~~~~~~ai~~L~~~Gi~v~~q~vLl~g----v  240 (321)
T TIGR03822       184 --------RVTPALIAALKTSGKT-VYVALHANHA----------RELTAEARAACARLIDAGIPMVSQSVLLRG----V  240 (321)
T ss_pred             --------hcCHHHHHHHHHcCCc-EEEEecCCCh----------hhcCHHHHHHHHHHHHcCCEEEEEeeEeCC----C
Confidence                    0123456677778844 5555544321          223466778889999999987532211111    1


Q ss_pred             CCCHHHHHHHHHHHHHCCcC--EEEEcCCcCC-----CcHHHHHHHHHHHHHhCCC
Q 012949          299 AIPPSKVAYVAKELHDMGCF--EISLGDTIGV-----GTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~-----~~P~~v~~li~~l~~~~p~  347 (452)
                      -.+.+.+.++.+.+.++|+.  .+...|.++.     ..+++..++++.+++.+++
T Consensus       241 Nd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g  296 (321)
T TIGR03822       241 NDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG  296 (321)
T ss_pred             CCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence            13577899999999999986  5666777732     4567889999999998876

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=94.51  E-value=1.2  Score=44.39  Aligned_cols=164  Identities=15%  Similarity=0.199  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCC--CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccch
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s--~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ++.--.--++.++++|++.|-+|+..+  ....|.  .-+.++++..++.+. .+..+.++....     +.+|...+++
T Consensus        17 ~~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~-----fg~y~~~~~~   91 (254)
T cd06557          17 LTAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMP-----FGSYQTSPEQ   91 (254)
T ss_pred             EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCC-----CCcccCCHHH
Confidence            333334567888999999999884321  011121  135677888777653 334442332222     2224443333


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-  293 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-  293 (452)
                      .++.       .++...++|++-|.|-.+                  ..+.+.|+.+++.|++|.+.|-..      +| 
T Consensus        92 av~~-------a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg  146 (254)
T cd06557          92 ALRN-------AARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGG  146 (254)
T ss_pred             HHHH-------HHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCeeccccccceeeeccCC
Confidence            3331       333444599999998764                  123355677778888765333221      11 


Q ss_pred             CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          294 CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       294 ~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      .-..+|++  .+.+.+-++++.++||+.|.+.=     .|.   ++++.+.++++.
T Consensus       147 ~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~i  194 (254)
T cd06557         147 YKVQGKTEEEAERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALSI  194 (254)
T ss_pred             ceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCC
Confidence            01123444  35677788889999999999964     343   366666666653

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB

Probab=94.51  E-value=6.5  Score=42.21  Aligned_cols=170  Identities=18%  Similarity=0.199  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHHHHHC--CCCEEEEecCCCCCcccccC-C-HHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhcc
Q 012949          144 TVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLA-D-ARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~~~p~~~-D-~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      .++.++.++.+..+.+.  ++..|=+..+.-    |-+. + .-+.+..+++ .++.++..-+-+..             
T Consensus        59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GE----PLl~~e~~~~~l~~~~~~~~~i~i~lsTNG~~-------------  121 (442)
T TIGR01290        59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGD----PLANIGKTFQTLELVARQLPDVKLCLSTNGLM-------------  121 (442)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEecCCC----cccCccccHHHHHHHHHhcCCCeEEEECCCCC-------------
Confidence            47899999998888754  566655544332    2221 1 1233444443 34565543333321             


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--HHHhh---------h-cCCCHHHH-HHHHHHHHHHHHhCCCcEE
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--AFSKS---------N-INCSIEDS-LVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--~~~~~---------~-~~~s~e~~-l~~~~~~v~~Ak~~G~~V~  285 (452)
                                ..+.++..++.|++.|.|.+...+  .|.+.         + .|.+-... +++..+.++++++.|+.|.
T Consensus       122 ----------l~e~i~~L~~~gvd~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~  191 (442)
T TIGR01290       122 ----------LPEHVDRLVDLGVGHVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVK  191 (442)
T ss_pred             ----------CHHHHHHHHHCCCCeEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEE
Confidence                      124678888999999998875443  44321         1 23333332 5666677888899999876


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE------c--CCc------CCCcHHHHHHHHHHHHHhCC
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL------G--DTI------GVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L------~--DT~------G~~~P~~v~~li~~l~~~~p  346 (452)
                      ++....   |  + .+.+.+.++++.+.+.|++.+.|      +  ++.      -..+++++.++-+.+.+.+|
T Consensus       192 v~~vlI---p--G-iND~~i~~l~~~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~  260 (442)
T TIGR01290       192 VNSVLI---P--G-INDEHLVEVSKQVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP  260 (442)
T ss_pred             EEEEee---C--C-cCHHHHHHHHHHHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence            544322   1  2 23478999999999999886666      2  111      12355666666666665555

This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=94.50  E-value=0.083  Score=48.78  Aligned_cols=194  Identities=14%  Similarity=0.119  Sum_probs=91.0

Q ss_pred             HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF  233 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i  233 (452)
                      ++.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++.+........ ........+ -+...-...+.+
T Consensus         1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~-~~~~~~~~~-r~~~~~~~~~~i   77 (213)
T PF01261_consen    1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPD-EENGSANDE-REEALEYLKKAI   77 (213)
T ss_dssp             HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTG-TTSTTSSSH-HHHHHHHHHHHH
T ss_pred             ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEeccccccccc-ccccCcchh-hHHHHHHHHHHH
Confidence            36788999999999864221111000122333444433 366655554322200000 000000000 000000123477


Q ss_pred             HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  313 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~  313 (452)
                      +.|...|++.+.+....-+...........+...+.+.++.++|++.|+.+.  +....+.......+.+.+.++++.+ 
T Consensus        78 ~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~--lE~~~~~~~~~~~~~~~~~~~l~~~-  154 (213)
T PF01261_consen   78 DLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIA--LENHPGPFSETPFSVEEIYRLLEEV-  154 (213)
T ss_dssp             HHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEE--EE-SSSSSSSEESSHHHHHHHHHHH-
T ss_pred             HHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEE--EecccCccccchhhHHHHHHHHhhc-
Confidence            8888999999998865100000001112245566677778899999997764  3322111111112225555555544 


Q ss_pred             HCCcCEEEE-cCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          314 DMGCFEISL-GDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       314 ~~Gad~I~L-~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                        +-+.+.+ -|+.=...- ....+.++.+...    -..+|.+|..+
T Consensus       155 --~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~  196 (213)
T PF01261_consen  155 --DSPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG  196 (213)
T ss_dssp             --TTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred             --CCCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence              4332333 265332222 3555666666554    36799999887

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=94.42  E-value=1.4  Score=45.65  Aligned_cols=141  Identities=18%  Similarity=0.095  Sum_probs=83.5

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-C------CcEEEEEEeeec
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-S------IPVRGYVSCVVG  293 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G------~~V~~~l~~~~g  293 (452)
                      +..++|.++|.|.|.|-..        .|+..++.  ++|-|.++=.+.+.++++..|+. |      +.|..-++..- 
T Consensus       148 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~-  226 (353)
T cd04735         148 EATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE-  226 (353)
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc-
Confidence            3567788899999988642        35544332  36778888888888888888874 4      23333333210 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc----CCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHH
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                       ...+-.+++...++++.+.++|+|.|.+.-..    ....|..-.+.++.+++.+. .++|-...-  .- -...+..+
T Consensus       227 -~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Gg--i~-t~e~ae~~  302 (353)
T cd04735         227 -PEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGS--IN-TPDDALEA  302 (353)
T ss_pred             -ccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECC--CC-CHHHHHHH
Confidence             01223467888999999999999999884311    01111112344566666552 345444322  11 23556677


Q ss_pred             HHcCCCEE
Q 012949          369 LQMGISTV  376 (452)
Q Consensus       369 l~aGa~~V  376 (452)
                      ++.|||.|
T Consensus       303 l~~gaD~V  310 (353)
T cd04735         303 LETGADLV  310 (353)
T ss_pred             HHcCCChH
Confidence            77786643

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=94.39  E-value=3.7  Score=36.99  Aligned_cols=131  Identities=16%  Similarity=0.178  Sum_probs=79.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.|++.|.+-..............         ..+....+..+.++.+.+...      .  ..+.+...++
T Consensus        16 ~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~a~   78 (200)
T cd04722          16 ELAKAAAEAGADAIIVGTRSSDPEEAETDDK---------EVLKEVAAETDLPLGVQLAIN------D--AAAAVDIAAA   78 (200)
T ss_pred             HHHHHHHcCCCCEEEEeeEEECcccCCCccc---------cHHHHHHhhcCCcEEEEEccC------C--chhhhhHHHH
Confidence            4777788889998887654322111100000         112233344566665444321      1  1223333467


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.......+.   ..++|++.|...-..
T Consensus        79 ~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~  146 (200)
T cd04722          79 AARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGG  146 (200)
T ss_pred             HHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCc
Confidence            8899999999999888764 8889999999999886666666555544332221   578899988765443

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=94.39  E-value=3.1  Score=39.05  Aligned_cols=175  Identities=19%  Similarity=0.165  Sum_probs=93.4

Q ss_pred             hcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc----CC
Q 012949          120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE----GA  195 (452)
Q Consensus       120 ~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~----~~  195 (452)
                      +..+|+-+.|+|..+-+.          +.-.+.++.+.+.|++.|++.....        +..+..+.++++.    ..
T Consensus         3 ~~~~~~~~~it~~~~~~~----------~~~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~   64 (212)
T PRK00043          3 MMKLLRLYLITDSRDDSG----------RDLLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRY   64 (212)
T ss_pred             CCCCCCEEEEECCccccc----------ccHHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHh
Confidence            456677666766532111          2345677888889999999975321        1223333333321    11


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      ....++.                            +.++.+.+.|++.|++.....+                  ...++
T Consensus        65 ~~~l~~~----------------------------~~~~~a~~~gad~vh~~~~~~~------------------~~~~~   98 (212)
T PRK00043         65 GVPLIVN----------------------------DRVDLALAVGADGVHLGQDDLP------------------VADAR   98 (212)
T ss_pred             CCeEEEe----------------------------ChHHHHHHcCCCEEecCcccCC------------------HHHHH
Confidence            1111221                            2788899999999887432110                  11223


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc---CCc-CCC-cHHHHHHHHHHHHHhCCCccE
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---DTI-GVG-TPGTVVPMLEAVMAVVPVEKL  350 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~---DT~-G~~-~P~~v~~li~~l~~~~p~~~l  350 (452)
                      ..+..+..+.  ++    +  +   +++.    +.++.+.|+|.|.+.   +|. .-. .|..-.+.++.+++.++..++
T Consensus        99 ~~~~~~~~~g--~~----~--~---t~~e----~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v  163 (212)
T PRK00043         99 ALLGPDAIIG--LS----T--H---TLEE----AAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPI  163 (212)
T ss_pred             HHcCCCCEEE--Ee----C--C---CHHH----HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCE
Confidence            3444555443  22    1  1   2333    344557899999763   221 111 011113445555655553455


Q ss_pred             EEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          351 AVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       351 ~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ..-+    |....|.-.++.+||+.|=
T Consensus       164 ~a~G----GI~~~~i~~~~~~Ga~gv~  186 (212)
T PRK00043        164 VAIG----GITPENAPEVLEAGADGVA  186 (212)
T ss_pred             EEEC----CcCHHHHHHHHHcCCCEEE
Confidence            5543    6667899999999999773

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=94.36  E-value=1.4  Score=45.44  Aligned_cols=138  Identities=22%  Similarity=0.147  Sum_probs=87.4

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r  299 (452)
                      +..+.|.++|.|.|.|-..        .|+..++  .++|-|.++=.+.+.++++..|+. ++.|.+-++..-.  ..+-
T Consensus       146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~--~~~G  223 (337)
T PRK13523        146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDY--HPGG  223 (337)
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc--CCCC
Confidence            3566778899999988654        2554433  336778888888888888888775 4555444442100  1112


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCC-------cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVG-------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~-------~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+++...++++.+.++|+|.|.+.  .|..       .|....++.+.+++.++..-+....-++    ...+.++++.|
T Consensus       224 ~~~~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g  297 (337)
T PRK13523        224 LTVQDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNN  297 (337)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcC
Confidence            468899999999999999999883  3431       1222345677788776532234433333    35677788887


Q ss_pred             -CCEE
Q 012949          373 -ISTV  376 (452)
Q Consensus       373 -a~~V  376 (452)
                       +|.|
T Consensus       298 ~~D~V  302 (337)
T PRK13523        298 RADLI  302 (337)
T ss_pred             CCChH
Confidence             6754

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=94.35  E-value=2.2  Score=42.66  Aligned_cols=169  Identities=15%  Similarity=0.203  Sum_probs=91.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCC--CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccch
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s--~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ++.--..-++.++++|++.|-+|+..+  ....|.  .-+.++++..++.+. .+..+.++..+.     +-+|+..+.+
T Consensus        20 ~tayD~~sArl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~p-----fg~y~~~~~~   94 (264)
T PRK00311         20 LTAYDYPFAKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMP-----FGSYQASPEQ   94 (264)
T ss_pred             EeCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCC-----CCCccCCHHH
Confidence            333334567889999999999884321  011121  125577887777653 233322222221     1123222222


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-  293 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-  293 (452)
                      .++       ..++...++|++-|.|-.+                  ..+.+.|+.+.+.|++|.+.|-..      +| 
T Consensus        95 av~-------~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg  149 (264)
T PRK00311         95 ALR-------NAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGG  149 (264)
T ss_pred             HHH-------HHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEeeeecccceeecccCC
Confidence            222       1233344499999998764                  122355677778898886443321      00 


Q ss_pred             CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          294 CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       294 ~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .-.-+|++  .+.+.+-++++.++||+.|.+.=     .|.   ++++.+.++++...|++
T Consensus       150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~-----v~~---~~~~~i~~~l~iP~igi  202 (264)
T PRK00311        150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLEC-----VPA---ELAKEITEALSIPTIGI  202 (264)
T ss_pred             eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCCCEEEe
Confidence            00123433  34677788889999999999953     244   35566666665433443

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=94.32  E-value=0.33  Score=48.91  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=86.5

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCc-HHHHHHHHHHHHHhCCC
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGT-PGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~-P~~v~~li~~l~~~~p~  347 (452)
                      +.+.+.||+.|+-|-+     |.     -.+.|.+..+.+++.+.+.. .|.+.. +..++. -..++.++..+.+.++ 
T Consensus         7 ~~ll~~Ake~~yAvpA-----fN-----~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~-   75 (286)
T COG0191           7 KELLDKAKENGYAVPA-----FN-----INNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG-   75 (286)
T ss_pred             HHHHHHHHHcCCceee-----ee-----ecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-
Confidence            6778999999987642     32     23578898999999998876 444433 223333 4678889999999998 


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +|+.+|  -|-|....-...|+++|..  ++|+|...+=|         | .-+.+++...+.
T Consensus        76 vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE---------Ni~~tkevv~~ah~  127 (286)
T COG0191          76 VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE---------NIAITKEVVEFAHA  127 (286)
T ss_pred             CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH---------HHHHHHHHHHHHHH
Confidence            566665  5788899999999999987  88999998877         6 446777777774

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=94.31  E-value=2.4  Score=42.36  Aligned_cols=209  Identities=15%  Similarity=0.186  Sum_probs=126.3

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHH--CCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c-CCceeEEe-
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVS--SGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPVLT-  201 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~--~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~-~~~l~~l~-  201 (452)
                      +..+|-|+      .+...+.++..++++.-.+  .||..+.+-    |.|+|      ...+.++.. . ++++...+ 
T Consensus        11 ~~~ID~Tl------L~p~~T~~~I~~lc~eA~~~~~~faaVcV~----P~~v~------~a~~~L~~~~~~~vkv~tVig   74 (257)
T PRK05283         11 LSLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICIY----PRFIP------IARKTLREQGTPEIRIATVTN   74 (257)
T ss_pred             HHHhcccC------CCCCCCHHHHHHHHHHHHhcCCCeeEEEEC----HHHHH------HHHHHhcccCCCCCeEEEEec
Confidence            44667776      3346789999999999998  689888772    33333      223334321 1 35555433 


Q ss_pred             -cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          202 -PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       202 -~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                       |.-         ....  +       +....++.|++.|+++|.+.+..+-+.     ....+...+.+..+++.+.. 
T Consensus        75 FP~G---------~~~t--~-------~K~~Ea~~Ai~~GAdEiD~Vinig~lk-----~g~~~~v~~ei~~v~~~~~~-  130 (257)
T PRK05283         75 FPHG---------NDDI--D-------IALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFELVKACKEACAA-  130 (257)
T ss_pred             CCCC---------CCcH--H-------HHHHHHHHHHHcCCCEEeeeccHHHHh-----CCcHHHHHHHHHHHHHHhCC-
Confidence             321         1111  1       123477889999999999998776542     23466777777777777752 


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHH-HHHHHHHHHHHCCcCEEEEcCCcC----CCcHHHHHHHHHHHHHh-CCCccEEEEe
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPS-KVAYVAKELHDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAV-VPVEKLAVHL  354 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e-~l~~~a~~l~~~Gad~I~L~DT~G----~~~P~~v~~li~~l~~~-~p~~~l~vH~  354 (452)
                      |..+-+-|..       +..+.+ .+.+.++.+.++|||-|-  =++|    ..+|+.++-|.+.+++. .+. .+++..
T Consensus       131 ~~~lKVIlEt-------~~L~~ee~i~~a~~~a~~aGADFVK--TSTGf~~~gAt~edv~lm~~~i~~~~~~~-~vgIKA  200 (257)
T PRK05283        131 NVLLKVIIET-------GELKDEALIRKASEIAIKAGADFIK--TSTGKVPVNATLEAARIMLEVIRDMGVAK-TVGFKP  200 (257)
T ss_pred             CceEEEEEec-------cccCCHHHHHHHHHHHHHhCCCEEE--cCCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEc
Confidence            4444432331       234455 588899999999999654  4455    36788888777776542 122 355544


Q ss_pred             C---CCcCcHHHHHHHHH-HcCCCEEeecccCCCC
Q 012949          355 H---DTYGQSLPNILISL-QMGISTVDCSVAGLGG  385 (452)
Q Consensus       355 H---nd~GlA~ANaLaAl-~aGa~~VD~Sv~GlGe  385 (452)
                      -   .|+-.|.+-..++= ..|.++++.-..=+|.
T Consensus       201 sGGIrt~~~A~~~i~ag~~~lg~~~~~~~~fR~G~  235 (257)
T PRK05283        201 AGGVRTAEDAAQYLALADEILGADWADARHFRFGA  235 (257)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhChhhcCcccEeeeh
Confidence            2   34444444333332 3678888877776665

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=94.29  E-value=1.8  Score=42.35  Aligned_cols=109  Identities=24%  Similarity=0.208  Sum_probs=79.9

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc-----cEEEEeCCCcC
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE-----KLAVHLHDTYG  359 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~-----~l~vH~Hnd~G  359 (452)
                      ++.+.|+|... .+.+-=+.-++.+.+.|||+|-+.=.+|.+   ..+.+++-|+.+++..++.     .|+.-.=++.-
T Consensus        63 v~tVigFP~G~-~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee  141 (228)
T COG0274          63 VCTVIGFPLGA-NTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE  141 (228)
T ss_pred             EEEecCCCCCC-ChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence            56667888754 334444456778889999999888777754   4577888899888887651     24555555555


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      + ...+..++++|||.|=+|-+.         .+|++.+|++..+.+.
T Consensus       142 ~-~~A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~  179 (228)
T COG0274         142 K-RKACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKET  179 (228)
T ss_pred             H-HHHHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHH
Confidence            5 677888999999999998753         3568999999888775

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=94.28  E-value=2.1  Score=42.61  Aligned_cols=182  Identities=15%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.++.+++++.|.+.|+.....+.+   .+|.-.-  ...++-++.+++. ....+.+++.-.                 
T Consensus        37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~--g~g~~gl~~l~~~~~~~Gl~~~t~~~-----------------   97 (260)
T TIGR01361        37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQ--GLGEEGLKLLRRAADEHGLPVVTEVM-----------------   97 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCceecCCCCCcccc--ccHHHHHHHHHHHHHHhCCCEEEeeC-----------------
Confidence            6788899999999999886554433   1221000  0113334444432 122333333111                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~-  300 (452)
                             ..+.++.+.+. ++.+.|...  +.              .+ .++++++.+.|.+|.  |+.       +.. 
T Consensus        98 -------d~~~~~~l~~~-~d~lkI~s~--~~--------------~n-~~LL~~~a~~gkPVi--lk~-------G~~~  143 (260)
T TIGR01361        98 -------DPRDVEIVAEY-ADILQIGAR--NM--------------QN-FELLKEVGKQGKPVL--LKR-------GMGN  143 (260)
T ss_pred             -------ChhhHHHHHhh-CCEEEECcc--cc--------------cC-HHHHHHHhcCCCcEE--EeC-------CCCC
Confidence                   12367777777 787776543  21              11 245577777898876  332       233 


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCC-c-CC-CcHHHH--HHHHHHHHHhCCCccEEE-EeCC--CcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDT-I-GV-GTPGTV--VPMLEAVMAVVPVEKLAV-HLHD--TYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT-~-G~-~~P~~v--~~li~~l~~~~p~~~l~v-H~Hn--d~GlA~ANaLaAl~aG  372 (452)
                      +++.+...++.+.+.|.+.|.|+.. + .+ -.|...  -..+..+++.++ .||++ =.|-  ..-+..+-+++|+.+|
T Consensus       144 t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~G  222 (260)
T TIGR01361       144 TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAG  222 (260)
T ss_pred             CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcC
Confidence            7899999999999999988888874 2 33 233322  233566676664 47888 4553  2334567788999999


Q ss_pred             CC--EEeeccc
Q 012949          373 IS--TVDCSVA  381 (452)
Q Consensus       373 a~--~VD~Sv~  381 (452)
                      |+  .|+.-+.
T Consensus       223 a~gl~iE~H~t  233 (260)
T TIGR01361       223 ADGLMIEVHPD  233 (260)
T ss_pred             CCEEEEEeCCC
Confidence            99  6665544

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=94.24  E-value=0.22  Score=47.40  Aligned_cols=120  Identities=18%  Similarity=0.251  Sum_probs=72.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC-CCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG-AIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~-r~d~e~l~~~a  309 (452)
                      ..++|..-|+.-||.--                  .+++    +.+|+ -.++|.+-+-..+  ++.. ..+|  -.+-+
T Consensus         4 mA~Aa~~gGA~giR~~~------------------~~dI----~aik~~v~lPIIGi~K~~y--~~~~V~ITP--T~~ev   57 (192)
T PF04131_consen    4 MAKAAEEGGAVGIRANG------------------VEDI----RAIKKAVDLPIIGIIKRDY--PDSDVYITP--TLKEV   57 (192)
T ss_dssp             HHHHHHHCT-SEEEEES------------------HHHH----HHHHTTB-S-EEEE-B-SB--TTSS--BS---SHHHH
T ss_pred             HHHHHHHCCceEEEcCC------------------HHHH----HHHHHhcCCCEEEEEeccC--CCCCeEECC--CHHHH
Confidence            45677888999999752                  1222    22333 3667765444322  1211 1122  12456


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      +++.++|++.|.| |...-..|..+.++++.+++++ . .+---+-     -+...+.|.++|+|.|-+|+.|+=+
T Consensus        58 ~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~-~-l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~  125 (192)
T PF04131_consen   58 DALAEAGADIIAL-DATDRPRPETLEELIREIKEKY-Q-LVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP  125 (192)
T ss_dssp             HHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT-S-EEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST
T ss_pred             HHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC-c-EEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC
Confidence            6778899999999 8899999999999999999987 2 2322221     2689999999999999999999854

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PTZ00372 endonuclease 4-like protein; Provisional

Probab=94.22  E-value=3.3  Score=44.10  Aligned_cols=151  Identities=17%  Similarity=0.199  Sum_probs=91.0

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      .+++++|.+.|++.|.+-... ..     ...+.+++++++.+.+..+.+....|...|..+.|....--.+++.+.+++
T Consensus       221 ~~eL~rA~~LGa~~VV~HPGs-~~-----~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Ii  294 (413)
T PTZ00372        221 LDDLQRCEQLGIKLYNFHPGS-TV-----GQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDII  294 (413)
T ss_pred             HHHHHHHHHcCCCEEEECCCc-CC-----CCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHH
Confidence            458899999999987765432 11     123457888888888877766544466556644322111124678888888


Q ss_pred             HHHHHCCcCEEEEcCCc-----CC--CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          310 KELHDMGCFEISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +.+.+...-.|+| ||.     |+  -+|+.+.++++.+.+.++ +---.+|+||..|--        -+|.|+ |   .
T Consensus       295 d~v~~~~rlGvCL-DTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~--------GS~~DR-H---~  361 (413)
T PTZ00372        295 ALVEDKSRVGVCL-DTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDL--------GSGLDR-H---E  361 (413)
T ss_pred             HhcCCcCCeEEEE-EHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCcc--------CCCccc-c---c
Confidence            7764322223444 664     32  367788888888877664 223578999986531        123331 2   2


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .+|+        |+...+.+...++.
T Consensus       362 ~IG~--------G~Ig~~~f~~l~~~  379 (413)
T PTZ00372        362 NIGK--------GKLGMETFKFIMNS  379 (413)
T ss_pred             CcCC--------CCcChHHHHHHHhC
Confidence            3443        66777777777763

>PRK09234 fbiC FO synthase; Reviewed

Probab=94.21  E-value=2.7  Score=48.64  Aligned_cols=229  Identities=12%  Similarity=0.063  Sum_probs=128.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc--------cccc---CCHHHHHHHHHhccC-Cce-eEEecchhhhh
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKW--------VPQL---ADARDVMEAVRDLEG-ARL-PVLTPNLKVIL  208 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~--------~p~~---~D~e~v~~~i~~~~~-~~l-~~l~~~~~~~i  208 (452)
                      ...++.++.++.++...+.|+..+-+.+...|..        ...+   .+.+.+.+.++.+.. ..+ +-+.++.-   
T Consensus        99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~l---  175 (843)
T PRK09234         99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVM---  175 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCC---
Confidence            3468999999999999999999988877665541        1111   013444444443321 111 11111110   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEec-CChHH-Hh----h--hcCCCHHHHHHHHHHHHHHHHhC
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFAS-ASEAF-SK----S--NINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s-~Sd~~-~~----~--~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                                          ..++++..++.|++ ..+..- +++.+ .+    +  ..+++.++   + .++++.|+++
T Consensus       176 --------------------s~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~---R-L~ti~~A~~l  230 (843)
T PRK09234        176 --------------------SWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAV---R-LRVLEDAGRL  230 (843)
T ss_pred             --------------------CHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHH---H-HHHHHHHHHc
Confidence                                12355566666654 222221 12222 11    0  12334443   4 4788999999


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHC-----CcCEEEE------cCCc----CCCcHHHHHHHHHHHHHhC
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-----GCFEISL------GDTI----GVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-----Gad~I~L------~DT~----G~~~P~~v~~li~~l~~~~  345 (452)
                      |+++...+++-.|   +   ++++.++.+..+.+.     |+..|.+      .+|-    ...+|.+...+|+..|-.+
T Consensus       231 Gi~~tsG~L~GiG---E---t~edRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL  304 (843)
T PRK09234        231 SVPFTTGILIGIG---E---TLAERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVL  304 (843)
T ss_pred             CCCccceEEEECC---C---CHHHHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence            9999877775332   2   345555555555544     4554443      2442    3477888888888887777


Q ss_pred             CCccEEEEeC-CCcCcHHHHHHHHHHcCCCEEeecc--cCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          346 PVEKLAVHLH-DTYGQSLPNILISLQMGISTVDCSV--AGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       346 p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~VD~Sv--~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      |.. +.+-.- |..|..  -+..+|.+||+=+.++.  .+--.   +|.+. .+.++++....+..|+.
T Consensus       305 ~~~-~~Iqa~~~l~g~~--~~~~~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~  366 (843)
T PRK09234        305 GPK-MRIQAPPNLVSGD--ECAALLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT  366 (843)
T ss_pred             CCC-ceeeCccccCCHH--HHHHHHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence            642 233222 444543  45678999999888883  33100   01122 36789999999866653

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=94.19  E-value=3.8  Score=40.20  Aligned_cols=173  Identities=14%  Similarity=0.014  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccc
Q 012949          146 PTGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~  219 (452)
                      +...-.+-++.|.++|++++=+    |.|     +|.+.=...+++.++.  +..+-+  ++.+-               
T Consensus        23 d~~~l~~el~~l~~~g~d~lHiDVMDG~F-----VPNitfGp~~i~~i~~--~~~~DvHLMv~~P---------------   80 (228)
T PRK08091         23 NWLKFNETLTTLSENQLRLLHFDIADGQF-----SPFFTVGAIAIKQFPT--HCFKDVHLMVRDQ---------------   80 (228)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeccCCCc-----CCccccCHHHHHHhCC--CCCEEEEeccCCH---------------
Confidence            4455667788889999998766    444     4544322345666653  222222  22111               


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                                .+.++..+++|++.|.+-.-+                .....+++++.|++|..+.+.|..   +|.   
T Consensus        81 ----------~~~i~~~~~aGad~It~H~Ea----------------~~~~~~~l~~Ik~~g~~~kaGlal---nP~---  128 (228)
T PRK08091         81 ----------FEVAKACVAAGADIVTLQVEQ----------------THDLALTIEWLAKQKTTVLIGLCL---CPE---  128 (228)
T ss_pred             ----------HHHHHHHHHhCCCEEEEcccC----------------cccHHHHHHHHHHCCCCceEEEEE---CCC---
Confidence                      136788899999988775432                133457789999999944444442   232   


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      ++.+.+.+++..     +|.|-+    +.-.|..--..+.+-|+.+++..+.-.+.+-.==|=|.-..|.-...++|||.
T Consensus       129 Tp~~~i~~~l~~-----vD~VLiMtV~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~  203 (228)
T PRK08091        129 TPISLLEPYLDQ-----IDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDW  203 (228)
T ss_pred             CCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCE
Confidence            466777777653     343322    23334444455666677766654321122223336678888999999999996


Q ss_pred             Ee
Q 012949          376 VD  377 (452)
Q Consensus       376 VD  377 (452)
                      +=
T Consensus       204 ~V  205 (228)
T PRK08091        204 VV  205 (228)
T ss_pred             EE
Confidence            53

>PRK08446 coproporphyrinogen III oxidase; Provisional

Probab=94.11  E-value=2.3  Score=43.89  Aligned_cols=85  Identities=11%  Similarity=-0.004  Sum_probs=60.3

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.|-+ +.++.. ...+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+
T Consensus        98 ~e~l~~l~~~GvnRiSiGvQS~~~~~-L~~lgR~--~~~~~~~~ai~~lr~~g~~~v~iDli--~GlPgq---t~~~~~~  169 (350)
T PRK08446         98 KAWLKGMKNLGVNRISFGVQSFNEDK-LKFLGRI--HSQKQIIKAIENAKKAGFENISIDLI--YDTPLD---NKKLLKE  169 (350)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHH-HHHcCCC--CCHHHHHHHHHHHHHcCCCEEEEEee--cCCCCC---CHHHHHH
Confidence            4578888999999999876 444433 3334542  2244555777999999996 555665  566654   4678888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      .++.+.+.|++.|.+
T Consensus       170 ~l~~~~~l~~~~is~  184 (350)
T PRK08446        170 ELKLAKELPINHLSA  184 (350)
T ss_pred             HHHHHHhcCCCEEEe
Confidence            889999999998865

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=94.07  E-value=1.6  Score=44.94  Aligned_cols=139  Identities=18%  Similarity=0.158  Sum_probs=89.0

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~  297 (452)
                      +..++|+++|.|.|.|-..        .|+..++  ..+|-|.++=.+...++++.+|+. |  +.|.+-++..-..  .
T Consensus       153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~--~  230 (338)
T cd04733         153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQ--R  230 (338)
T ss_pred             HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcC--C
Confidence            3566788899999988655        4665443  347788898888888999988874 4  4454434321000  1


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc---------------HHHHHHHHHHHHHhCCCccEEE-EeCCCcCcH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---------------PGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQS  361 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---------------P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA  361 (452)
                      .-.+++...++++.+.++|+|.|.+..  |...               +....++.+.+|++++. +|.. -...    .
T Consensus       231 ~g~~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~----t  303 (338)
T cd04733         231 GGFTEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT-PLMVTGGFR----T  303 (338)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCC-CEEEeCCCC----C
Confidence            125788889999999999999998632  2110               11124667778887753 4433 2221    3


Q ss_pred             HHHHHHHHHcC-CCEEee
Q 012949          362 LPNILISLQMG-ISTVDC  378 (452)
Q Consensus       362 ~ANaLaAl~aG-a~~VD~  378 (452)
                      ...+..+++.| ||.|-.
T Consensus       304 ~~~a~~~l~~g~aD~V~l  321 (338)
T cd04733         304 RAAMEQALASGAVDGIGL  321 (338)
T ss_pred             HHHHHHHHHcCCCCeeee
Confidence            56778888887 676543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein

Probab=94.05  E-value=4.6  Score=41.44  Aligned_cols=160  Identities=13%  Similarity=0.131  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHH-CCCCEEEEecCCCCCccccc-CC--HHHHHHHHHhccCC-------ceeEEecchhhhhhhhhh
Q 012949          145 VPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQL-AD--ARDVMEAVRDLEGA-------RLPVLTPNLKVILQRSIL  213 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~-~D--~e~v~~~i~~~~~~-------~l~~l~~~~~~~i~r~~~  213 (452)
                      ++.++..+++..+.+ .||..|-++- .-    |-+ .|  .+++++.++.++.+       +++++.|++         
T Consensus       125 ~~~~~~~~~i~~i~~~~~i~~VvltG-GE----PL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~r---------  190 (321)
T TIGR03821       125 PNKAQWKEALEYIAQHPEINEVILSG-GD----PLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDR---------  190 (321)
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEEeC-cc----cccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHH---------
Confidence            566777777777774 4888777654 22    222 23  34455555543322       222333431         


Q ss_pred             hhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec
Q 012949          214 FQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG  293 (452)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g  293 (452)
                                    .+.+-++...+.|...+.+ ++.+-.          .|.-+.+.++++.+++.|+.|.  +..+.-
T Consensus       191 --------------it~el~~~L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~Gi~v~--~qtvll  243 (321)
T TIGR03821       191 --------------ITSGLCDLLANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAGITLL--NQSVLL  243 (321)
T ss_pred             --------------hhHHHHHHHHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcCCEEE--ecceee
Confidence                          1223556666778776633 222211          1222446678899999999874  222220


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcCE--EEEcCCcCC-----CcHHHHHHHHHHHHHhCCC
Q 012949          294 CPVEGAIPPSKVAYVAKELHDMGCFE--ISLGDTIGV-----GTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       294 ~p~~~r~d~e~l~~~a~~l~~~Gad~--I~L~DT~G~-----~~P~~v~~li~~l~~~~p~  347 (452)
                      .  .-.-+.+.+.++++.+.++|+..  +...|-+|.     ..+++..++++.+++.+++
T Consensus       244 k--giNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG  302 (321)
T TIGR03821       244 R--GVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG  302 (321)
T ss_pred             C--CCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence            0  00126788999999999999864  444666664     4678899999999998875

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.

>PRK05660 HemN family oxidoreductase; Provisional

Probab=94.03  E-value=3.2  Score=43.38  Aligned_cols=86  Identities=12%  Similarity=0.023  Sum_probs=60.1

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.+-+..-+-..-..+|+.  ...+.+.++++.+++.|+.. .+.++  +|-|..   +.+.+.+.
T Consensus       107 ~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli--~Glpgq---t~~~~~~~  179 (378)
T PRK05660        107 ADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLM--HGLPDQ---SLEEALDD  179 (378)
T ss_pred             HHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            458888999999999998744332223334442  23445556778999999973 45555  566654   57888889


Q ss_pred             HHHHHHCCcCEEEE
Q 012949          309 AKELHDMGCFEISL  322 (452)
Q Consensus       309 a~~l~~~Gad~I~L  322 (452)
                      ++.+.+.|++.|.+
T Consensus       180 l~~~~~l~p~~is~  193 (378)
T PRK05660        180 LRQAIALNPPHLSW  193 (378)
T ss_pred             HHHHHhcCCCeEEe
Confidence            99999999998863

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme

Probab=94.01  E-value=1.7  Score=45.75  Aligned_cols=151  Identities=12%  Similarity=0.151  Sum_probs=89.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..+.++.++-++.|.+.|++.|-+...   ......+......++++.+.+.++....-+. ..+            +..
T Consensus       166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~-~~~------------p~~  232 (414)
T TIGR01579       166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLS-SID------------PED  232 (414)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEe-CCC------------hhh
Confidence            478899999999999999998876421   1111000012345566666554433211111 000            000


Q ss_pred             hhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEEeeecCC
Q 012949          221 VISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCP  295 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~--~G~~V~~~l~~~~g~p  295 (452)
                             ...+-++...++|  ...+.+.+ +.|+.-++. .|+.  ...+.+.++++.+++  .|+.+.++++  +|.|
T Consensus       233 -------~~~ell~~m~~~~~~~~~l~lglESgs~~vLk~-m~R~--~~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~P  300 (414)
T TIGR01579       233 -------IDEELLEAIASEKRLCPHLHLSLQSGSDRVLKR-MRRK--YTRDDFLKLVNKLRSVRPDYAFGTDII--VGFP  300 (414)
T ss_pred             -------CCHHHHHHHHhcCccCCCeEECCCcCChHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeeeeeEE--EECC
Confidence                   1234566666666  57777765 555544433 4433  234566678888888  8888887776  6778


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      .++   .+.+.+.++.+.+.+.+.+.+
T Consensus       301 gET---~ed~~~tl~~i~~~~~~~~~~  324 (414)
T TIGR01579       301 GES---EEDFQETLRMVKEIEFSHLHI  324 (414)
T ss_pred             CCC---HHHHHHHHHHHHhCCCCEEEe
Confidence            764   677888888888888876653

This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=93.90  E-value=7.1  Score=38.39  Aligned_cols=216  Identities=14%  Similarity=0.081  Sum_probs=138.6

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +++..++-...|.+-|...+-+.-.. +...+|-. +..+.+.+++.-.+..+.+.+--.                    
T Consensus        40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~-kf~d~lK~lke~~~l~inaHvGfv--------------------   98 (275)
T COG1856          40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLW-KFKDELKALKERTGLLINAHVGFV--------------------   98 (275)
T ss_pred             chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHH-HHHHHHHHHHHhhCeEEEEEeeec--------------------
Confidence            44455566678889999987775332 33345622 233444455444455555443111                    


Q ss_pred             hhhccHHhHHHHHHcCCCEEEE-EecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAI-FASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i-~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                          ..++++..++.++|.+-+ |++-+|+ ++..  +.+|.++.+    +.+++.++.|+.|...|..-.   +.++..
T Consensus        99 ----dE~~~eklk~~~vdvvsLDfvgDn~v-Ik~vy~l~ksv~dyl----~~l~~L~e~~irvvpHitiGL---~~gki~  166 (275)
T COG1856          99 ----DESDLEKLKEELVDVVSLDFVGDNDV-IKRVYKLPKSVEDYL----RSLLLLKENGIRVVPHITIGL---DFGKIH  166 (275)
T ss_pred             ----cHHHHHHHHHhcCcEEEEeecCChHH-HHHHHcCCccHHHHH----HHHHHHHHcCceeceeEEEEe---ccCccc
Confidence                124889999999998877 4555554 3333  455655555    556888999999866555322   223443


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc---CCcCC----C---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHH
Q 012949          302 PSKVAYVAKELHDMGCFEISLG---DTIGV----G---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQ  370 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~---DT~G~----~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~  370 (452)
                      -|+  +.++.+.++..|.+.|.   =|.|.    .   +|+++...++..|+.+|+ ++.+-|---+|--- ----.|+.
T Consensus       167 ~e~--kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~  243 (275)
T COG1856         167 GEF--KAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVL  243 (275)
T ss_pred             chH--HHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHH
Confidence            333  56777888888866552   34442    1   357788888888899998 88888888888653 33456889


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHH
Q 012949          371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVY  403 (452)
Q Consensus       371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~  403 (452)
                      +|+|.|---..|.+|      =++-...+.+++
T Consensus       244 ~gVd~It~P~~~t~e------~ak~~r~i~~~~  270 (275)
T COG1856         244 AGVDRITFPPRGTIE------YAKSIRDIEIIY  270 (275)
T ss_pred             cCCceeecCCcccee------hhhhhhhhhhhh
Confidence            999999999999998      455555555554

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=93.90  E-value=1.3  Score=44.69  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=68.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEE-----cCCc-CC---CcH
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISL-----GDTI-GV---GTP  331 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L-----~DT~-G~---~~P  331 (452)
                      ..+..++.+.+.   .++.+.++.++|..         .+++.+.+.++.+.++| +|.|.|     .-.. |.   ..|
T Consensus        75 g~~~~~~~~~~~---~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~  142 (301)
T PRK07259         75 GVDAFIEEELPW---LEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDP  142 (301)
T ss_pred             CHHHHHHHHHHH---HhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCH
Confidence            344555544432   23446666655531         35789999999999999 998877     1111 21   358


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          332 GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       332 ~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.++++.+++.+ +.+|.+..=-+.--...-+..+.++|++.|+.
T Consensus       143 ~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        143 ELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             HHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence            99999999999987 45788876544433344455667899998864

>cd01335 Radical_SAM Radical SAM superfamily

Probab=93.85  E-value=3.1  Score=37.18  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++..+++......++..+.++.. .|-..|   ...++++.+++. ++..+.+.+....                     
T Consensus        31 ~~~~~~~~~~~~~~~~~i~~~gg-ep~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~---------------------   85 (204)
T cd01335          31 EEILDIVLEAKERGVEVVILTGG-EPLLYP---ELAELLRRLKKELPGFEISIETNGTL---------------------   85 (204)
T ss_pred             HHHHHHHHHHHhcCceEEEEeCC-cCCccH---hHHHHHHHHHhhCCCceEEEEcCccc---------------------
Confidence            56778888888889888888542 111011   223444444433 3455544442211                     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       ...+.++...++|+..|.+.+...+......++ .....+++..+.++.+++.|+.+.+.+.  .|.+...   .+.+.
T Consensus        86 -~~~~~~~~l~~~g~~~i~i~le~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~~---~~~~~  158 (204)
T cd01335          86 -LTEELLKELKELGLDGVGVSLDSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDED---EEDDL  158 (204)
T ss_pred             -CCHHHHHHHHhCCCceEEEEcccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCCh---hHHHH
Confidence             023578888899999999987554433333322 0112344555666888888988876665  3444332   45666


Q ss_pred             HHHHHHHHCC-cC
Q 012949          307 YVAKELHDMG-CF  318 (452)
Q Consensus       307 ~~a~~l~~~G-ad  318 (452)
                      +.++.+.+.+ ++
T Consensus       159 ~~~~~l~~~~~~~  171 (204)
T cd01335         159 EELELLAEFRSPD  171 (204)
T ss_pred             HHHHHHHhhcCcc
Confidence            6666666665 44

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=93.71  E-value=2.8  Score=41.35  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=56.2

Q ss_pred             HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHH--HHHHHHHHhCCCc
Q 012949          272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVV--PMLEAVMAVVPVE  348 (452)
Q Consensus       272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~--~li~~l~~~~p~~  348 (452)
                      .+++++.+.|.+|.  |+       .|..+.+++.+.++.+.+.|...|.|- =+.++=+|.+-.  ..|..|++.+| .
T Consensus       104 ~lL~~~A~tgkPvI--lS-------TG~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~  173 (241)
T PF03102_consen  104 PLLEYIAKTGKPVI--LS-------TGMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-V  173 (241)
T ss_dssp             HHHHHHHTT-S-EE--EE--------TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-S
T ss_pred             HHHHHHHHhCCcEE--EE-------CCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-C
Confidence            44566666777765  33       245667777777777756565444333 333444444433  34888999999 5


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      ++++=-|.. |  +.-.++|+..||..|  |.|+.
T Consensus       174 ~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld  205 (241)
T PF03102_consen  174 PVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD  205 (241)
T ss_dssp             EEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred             CEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence            899999987 4  455789999999998  56665

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=93.69  E-value=2.9  Score=43.43  Aligned_cols=85  Identities=21%  Similarity=0.124  Sum_probs=60.4

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.+-+ +.+|- ....+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+
T Consensus       108 ~e~l~~l~~~G~~rvslGvQS~~~~-~L~~l~R~--~s~~~~~~a~~~l~~~g~~~v~~dli--~GlPgq---t~~~~~~  179 (375)
T PRK05628        108 PEFFAALRAAGFTRVSLGMQSAAPH-VLAVLDRT--HTPGRAVAAAREARAAGFEHVNLDLI--YGTPGE---SDDDWRA  179 (375)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHH-HHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe--ccCCCC---CHHHHHH
Confidence            4577888889999999987 44443 33344442  2334455677889999998 776666  666765   4678888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      .++.+.+.|++.|.+
T Consensus       180 tl~~~~~l~~~~i~~  194 (375)
T PRK05628        180 SLDAALEAGVDHVSA  194 (375)
T ss_pred             HHHHHHhcCCCEEEe
Confidence            889999999988765

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=93.68  E-value=5.3  Score=40.11  Aligned_cols=200  Identities=17%  Similarity=0.149  Sum_probs=108.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+.-.++++.|.+.|++.|=+.-....  .+.+. .+|-.+.++   +..+-++++++- ..        .  +..+
T Consensus        17 ~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~l~~~~~~~~~~~~pvi~g-v~--------~--~t~~   82 (289)
T cd00951          17 SFDEDAYRAHVEWLLSYGAAALFAAGGTGE--FFSLT-PDEYAQVVRAAVEETAGRVPVLAG-AG--------Y--GTAT   82 (289)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECcCCcC--cccCC-HHHHHHHHHHHHHHhCCCCCEEEe-cC--------C--CHHH
Confidence            478999999999999999999877532221  12232 233333333   222223333321 10        0  0111


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                              ..+-.+.|.++|++.+.+..+.   +    +..+.++.++-+.++.+.   .++++..|=     .+ ....
T Consensus        83 --------~i~~a~~a~~~Gad~v~~~pP~---y----~~~~~~~i~~~f~~v~~~---~~~pi~lYn-----~~-g~~l  138 (289)
T cd00951          83 --------AIAYAQAAEKAGADGILLLPPY---L----TEAPQEGLYAHVEAVCKS---TDLGVIVYN-----RA-NAVL  138 (289)
T ss_pred             --------HHHHHHHHHHhCCCEEEECCCC---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEe-----CC-CCCC
Confidence                    1235677888999999885542   1    223555566655555443   467776443     11 2235


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      +++.+.+++    +.-...+.++||.|  ...++.++++    ..++ .+.+-.-.  +..=...+.++.+|++..   +
T Consensus       139 ~~~~l~~L~----~~~pnivgiKds~~--d~~~~~~~~~----~~~~-~~~v~~G~--~~~d~~~~~~l~~Ga~G~---i  202 (289)
T cd00951         139 TADSLARLA----ERCPNLVGFKDGVG--DIELMRRIVA----KLGD-RLLYLGGL--PTAEVFALAYLAMGVPTY---S  202 (289)
T ss_pred             CHHHHHHHH----hcCCCEEEEEeCCC--CHHHHHHHHH----hcCC-CeEEEeCC--CcchHhHHHHHHCCCCEE---E
Confidence            677666655    31247899999977  4566665543    3343 34443222  112234567788897643   4


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .|          .+|.--|.++...+.
T Consensus       203 s~----------~~n~~P~~~~~l~~~  219 (289)
T cd00951         203 SA----------VFNFVPEIALAFYAA  219 (289)
T ss_pred             ec----------hhhhhHHHHHHHHHH
Confidence            43          345656666655543

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=93.66  E-value=4.6  Score=40.45  Aligned_cols=163  Identities=13%  Similarity=0.172  Sum_probs=92.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCC--Cccccc--CCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccc
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSP--KWVPQL--ADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~--~~~p~~--~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      +.+.--..-++.++++||+.|-+|.....  ...|..  -+.++++...+.+. +++.+.++-.+.     +.+|+. ++
T Consensus        19 m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmP-----f~sy~~-~e   92 (263)
T TIGR00222        19 AITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLP-----FMSYAT-PE   92 (263)
T ss_pred             EEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCC-----cCCCCC-HH
Confidence            33333455688999999999999953211  001110  24567777666543 233333343333     334543 33


Q ss_pred             hhhhhhhhccHHhHHHHH-HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e
Q 012949          220 SVISSNLWVYLQGFEAAI-AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V  292 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~-~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~  292 (452)
                      +.++        ...+.+ ++|++-|.|-..                  ..+.+.++.+.+.|++|.+.|-.+      .
T Consensus        93 ~a~~--------na~rl~~eaGa~aVkiEgg------------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~  146 (263)
T TIGR00222        93 QALK--------NAARVMQETGANAVKLEGG------------------EWLVETVQMLTERGVPVVGHLGLTPQSVNIL  146 (263)
T ss_pred             HHHH--------HHHHHHHHhCCeEEEEcCc------------------HhHHHHHHHHHHCCCCEEEecCCCceeEeec
Confidence            3333        233334 489999998764                  112355688888999987333211      1


Q ss_pred             c-CCCCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          293 G-CPVEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       293 g-~p~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      | .-.-++++  .+.+.+-++++.++||+.|.|.=     .|.   ++.+.+.++++.
T Consensus       147 ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~-----vp~---~~a~~It~~l~i  196 (263)
T TIGR00222       147 GGYKVQGKDEEAAKKLLEDALALEEAGAQLLVLEC-----VPV---ELAAKITEALAI  196 (263)
T ss_pred             CCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcC-----CcH---HHHHHHHHhCCC
Confidence            1 11123332  34677778889999999999964     453   556666666653

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=93.63  E-value=0.3  Score=47.53  Aligned_cols=98  Identities=16%  Similarity=0.097  Sum_probs=65.8

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHH--HHHHHHHHHhCCCccEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLH-DTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v--~~li~~l~~~~p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .|+..+.+.++.+.+.|+|.+-+==+-|...|.-.  .+.++.+++..|..++.+|.| +|....+   -...++||++|
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad~i   92 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGASQF   92 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCCEE
Confidence            46788899999999999986554333377777632  467888888777888999999 4433322   45668899988


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                        ||-+  |       ++...++..+..++.+|..
T Consensus        93 --tvH~--e-------a~~~~~~~~l~~ik~~G~~  116 (228)
T PTZ00170         93 --TFHI--E-------ATEDDPKAVARKIREAGMK  116 (228)
T ss_pred             --EEec--c-------CCchHHHHHHHHHHHCCCe
Confidence              4442  2       2222266777777765543

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=93.61  E-value=2.6  Score=42.74  Aligned_cols=217  Identities=13%  Similarity=0.100  Sum_probs=122.1

Q ss_pred             HHHHHHCCCCEEEEecCC-C-CCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSFV-S-PKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~-s-~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++.+.++|++.|=+++.. + ...+|-  +-+.+++++.++++.+ +.+++++..-       .||+... ++.+     
T Consensus        28 Ari~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d-------~GyG~~~-~v~~-----   94 (290)
T TIGR02321        28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID-------TGFGNAV-NVHY-----   94 (290)
T ss_pred             HHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECC-------CCCCCcH-HHHH-----
Confidence            566788899999998641 1 122332  2356788888887644 4455554322       3566555 3322     


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhh-cC----CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSN-IN----CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIP  301 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~-~~----~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r~d  301 (452)
                         .+++..++|+.-|+|-+...+-+.-+. -+    .+.++..++++.+.+. + .+..... +..+    |+  ....
T Consensus        95 ---tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~I-~ART----Da~~~~~g  164 (290)
T TIGR02321        95 ---VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFVV-IARV----EALIAGLG  164 (290)
T ss_pred             ---HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEEE-EEEe----ccccccCC
Confidence               688889999999999987655321111 01    3678888887555433 2 3333221 1111    11  1123


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEEeecc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSV  380 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~VD~Sv  380 (452)
                      .+...+=++...++|||.|.+.=  +.-+|+++..+++.+..  | +++-+..=.+..+. +..++  ++| +.+|-...
T Consensus       165 ~deAI~Ra~aY~eAGAD~ifv~~--~~~~~~ei~~~~~~~~~--p-~pv~~~~~~~p~~~-~~~l~--~lg~~~~v~~g~  236 (290)
T TIGR02321       165 QQEAVRRGQAYEEAGADAILIHS--RQKTPDEILAFVKSWPG--K-VPLVLVPTAYPQLT-EADIA--ALSKVGIVIYGN  236 (290)
T ss_pred             HHHHHHHHHHHHHcCCCEEEecC--CCCCHHHHHHHHHhcCC--C-CCeEEecCCCCCCC-HHHHH--HhcCCcEEEECh
Confidence            46666668888999999999832  34678888887776532  2 23433220111111 22333  455 55533322


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      ..+        ++-..++++.+..++..|
T Consensus       237 ~~~--------~aa~~a~~~~~~~i~~~g  257 (290)
T TIGR02321       237 HAI--------RAAVGAVREVFARIRRDG  257 (290)
T ss_pred             HHH--------HHHHHHHHHHHHHHHHcC
Confidence            222        556677777777777543

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=93.58  E-value=0.38  Score=47.54  Aligned_cols=155  Identities=15%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d~e~l~~~a  309 (452)
                      +|+-.....-+|.+-+....+-++-+           +.+++-++.++++|+.|.      .|.- .+-.+....+.++.
T Consensus        28 ~dlLe~ag~yID~~K~g~Gt~~l~~~-----------~~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl   90 (244)
T PF02679_consen   28 EDLLESAGDYIDFLKFGWGTSALYPE-----------EILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYL   90 (244)
T ss_dssp             HHHHHHHGGG-SEEEE-TTGGGGSTC-----------HHHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHhhhhccEEEecCceeeecCH-----------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHH
Confidence            45555566779999998877765432           345688899999998875      2210 01112245677788


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CCCccEEEEeCC-------CcCcHHHHHHHHHHcCCCEE--eec
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD-------TYGQSLPNILISLQMGISTV--DCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p~~~l~vH~Hn-------d~GlA~ANaLaAl~aGa~~V--D~S  379 (452)
                      +.+.++|.+.|-+.|.+--+.++.-.++|+.++++ +. +.-++.-.+       |...-+..+...++|||+.|  ++-
T Consensus        91 ~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar  169 (244)
T PF02679_consen   91 EECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR  169 (244)
T ss_dssp             HHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T
T ss_pred             HHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            99999999999999999999999999999999876 32 233454443       35677888999999999965  444


Q ss_pred             cc---CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          380 VA---GLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       380 v~---GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      =.   |+=.      ..|+.-.+.+-..+..++
T Consensus       170 EsG~~Gi~~------~~g~~r~d~v~~i~~~~~  196 (244)
T PF02679_consen  170 ESGKGGIYD------NDGEVRTDLVEKIIERLG  196 (244)
T ss_dssp             TT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred             ccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence            22   5555      689999998888887544

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=93.57  E-value=3.5  Score=42.52  Aligned_cols=160  Identities=20%  Similarity=0.259  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccc
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      +.--..-++.++++||+.|-+|...      .+.-.|  -+.++++...+.+. ++..+.++..+.     +..|...++
T Consensus        41 TAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~--Vtld~mi~H~~aV~Rga~~a~vVaDmP-----fgSY~~s~e  113 (332)
T PLN02424         41 TAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLP--ITLDEMLVHCRAVARGANRPLLVGDLP-----FGSYESSTD  113 (332)
T ss_pred             ecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCC--cCHHHHHHHHHHHhccCCCCEEEeCCC-----CCCCCCCHH
Confidence            3333566889999999999999532      111111  24566777666542 344444443333     223544444


Q ss_pred             hhhhhhhhccHHhHHHH-HHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e
Q 012949          220 SVISSNLWVYLQGFEAA-IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V  292 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a-~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~  292 (452)
                      +.++        ...++ .++|++-|.+--..                 ....++|+...+.|++|.+.|-..      +
T Consensus       114 ~av~--------nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~l  168 (332)
T PLN02424        114 QAVE--------SAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVL  168 (332)
T ss_pred             HHHH--------HHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCCEEEeecccceeehhh
Confidence            3333        23344 57899999987542                 112355666668899998655432      1


Q ss_pred             c-CCCCCCC--CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          293 G-CPVEGAI--PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       293 g-~p~~~r~--d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      | .-.-++.  ..+.+.+-++++.++||+.|.|.=     .|..+   .+.+.+.++
T Consensus       169 GGykvqGr~~~~a~~li~dA~ale~AGAf~ivLE~-----Vp~~l---a~~It~~l~  217 (332)
T PLN02424        169 GGFRPQGRTAESAVKVVETALALQEAGCFAVVLEC-----VPAPV---AAAITSALQ  217 (332)
T ss_pred             cCccccCCCHHHHHHHHHHHHHHHHcCCcEEEEcC-----CcHHH---HHHHHHhCC
Confidence            1 1112232  124677788889999999999954     66664   444455554

>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2

Probab=93.57  E-value=2.2  Score=41.61  Aligned_cols=132  Identities=17%  Similarity=0.161  Sum_probs=74.2

Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--------CCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV--------LSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~--------~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                      ++.....|.|.+..+....+      ...+.+++.+.+.+..+.+++        .+..+.+.|        .+-.+.+.
T Consensus         4 i~~q~~l~~Di~~~lD~~~~------~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~l~gvI--------qGg~~~~l   69 (238)
T PF01702_consen    4 IEIQEALGPDIAMALDDCTP------YDASRKRAEKSVERTLRWLKECLEEHEEDKKQSLFGVI--------QGGDDKDL   69 (238)
T ss_dssp             HHHHHHHT-SEEE-------------TT--HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE----------TT-HHH
T ss_pred             HHHHHHHCCCEEEECCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhccCCCcceeeee--------CCCCCHHH
Confidence            33444568886555543332      223344444444444444332        233333322        34455666


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcCCCEEeecccC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      -.+.++.+.+.+.+.+.|.-........+..++|+.+.+.+|. ..-.|.   +|. ...+.+.++..|+|.+|++..-
T Consensus        70 R~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~-~~pr~l---~G~~~P~~i~~~v~~GvD~fDs~~p~  144 (238)
T PF01702_consen   70 RRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPP-DKPRYL---LGVGTPEEILEAVYLGVDLFDSSYPT  144 (238)
T ss_dssp             HHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-T-TS-EEE---TTB-SHHHHHHHHHTT--EEEESHHH
T ss_pred             HHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCc-ccceec---cCCCCHHHHHHHHHcCCcEEcchHHH
Confidence            6778888888779999998766666789999999999998874 244555   333 5789999999999999998753

4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=93.57  E-value=2.7  Score=45.15  Aligned_cols=149  Identities=18%  Similarity=0.247  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCc--ccccCCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKW--VPQLADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~--~p~~~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ..+.++.++.++.|.+.|++.|.+.... ....  .|...+..++++.+....+. ++.....+..              
T Consensus       183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--------------  248 (459)
T PRK14338        183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPA--------------  248 (459)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChh--------------
Confidence            4689999999999999999988876421 1100  11111244555555544332 2221121111              


Q ss_pred             hhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949          220 SVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC  294 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~  294 (452)
                       .      ...+-++...+.  |...+++.+ +.|+--++. +|+.  ...+.+.++++.+++.  |+.+.++++  +|.
T Consensus       249 -~------i~~ell~~l~~~~~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~  316 (459)
T PRK14338        249 -W------MTDRLIHAVARLPKCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGH  316 (459)
T ss_pred             -h------cCHHHHHHHhcccccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EEC
Confidence             0      112345555554  467777765 555543332 3322  2345555677778877  677776666  667


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      |.++   .+.+.+.++.+.+.+.+.+.
T Consensus       317 PgET---~ed~~~ti~~l~~l~~~~v~  340 (459)
T PRK14338        317 PGET---EEQFQRTYDLLEEIRFDKVH  340 (459)
T ss_pred             CCCC---HHHHHHHHHHHHHcCCCEeE
Confidence            7764   67788888888888887664

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.53  E-value=1.2  Score=44.41  Aligned_cols=128  Identities=20%  Similarity=0.220  Sum_probs=85.1

Q ss_pred             hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPPSKVAYV  308 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~e~l~~~  308 (452)
                      .+|.|+..|++-|.+.+.. |+         +-.+.++++.++++.|.++|+++.. .+|--|.-+..  ..+++.+...
T Consensus       102 ~ve~ai~lgadAV~~~Vy~Gse---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~a  171 (265)
T COG1830         102 TVEDAIRLGADAVGATVYVGSE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYA  171 (265)
T ss_pred             eHHHHHhCCCcEEEEEEecCCc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHH
Confidence            7888999999966554311 11         1247899999999999999998752 34434433322  3678889999


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC---CCcCcHHHHHHHHHHcCCCEEe
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H---nd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ++...++|||.|-..=|   ..|+.+++.++.    .| +||-+-.=   ++.--++.-.-+|+++|+..+.
T Consensus       172 aRlaaelGADIiK~~yt---g~~e~F~~vv~~----~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~  235 (265)
T COG1830         172 ARLAAELGADIIKTKYT---GDPESFRRVVAA----CG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA  235 (265)
T ss_pred             HHHHHHhcCCeEeecCC---CChHHHHHHHHh----CC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence            99999999998876332   234555555544    34 34444322   2445677888889999887554

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=93.46  E-value=8.7  Score=38.02  Aligned_cols=199  Identities=23%  Similarity=0.294  Sum_probs=111.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.+.-.++++.|.+.|++.|-+......  .+.+.+  ..++++.+.+..+-++.+++-...          ....+ 
T Consensus        14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~----------~~~~~-   80 (281)
T cd00408          14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTLTDEERKEVIEAVVEAVAGRVPVIAGVGA----------NSTRE-   80 (281)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEecCC----------ccHHH-
Confidence            589999999999999999999887533221  122322  233333333322223333221000          00001 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GA  299 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r  299 (452)
                             ..+-.+.|.+.|++.|.+..+.   +    +..+.++.++-+..+++.   .++++..|-     .|..  ..
T Consensus        81 -------~i~~a~~a~~~Gad~v~v~pP~---y----~~~~~~~~~~~~~~ia~~---~~~pi~iYn-----~P~~tg~~  138 (281)
T cd00408          81 -------AIELARHAEEAGADGVLVVPPY---Y----NKPSQEGIVAHFKAVADA---SDLPVILYN-----IPGRTGVD  138 (281)
T ss_pred             -------HHHHHHHHHHcCCCEEEECCCc---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CccccCCC
Confidence                   1234567788999999986542   1    224556666666555443   467775432     3432  34


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+++.+.++++     ....+.++||.+  .+.++.++++.    .+. .+.+-.=+|     ...+.++..|++   ++
T Consensus       139 l~~~~~~~L~~-----~~~v~giK~s~~--d~~~~~~~~~~----~~~-~~~v~~G~d-----~~~~~~l~~G~~---G~  198 (281)
T cd00408         139 LSPETIARLAE-----HPNIVGIKDSSG--DLDRLTRLIAL----LGP-DFAVLSGDD-----DLLLPALALGAD---GA  198 (281)
T ss_pred             CCHHHHHHHhc-----CCCEEEEEeCCC--CHHHHHHHHHh----cCC-CeEEEEcch-----HHHHHHHHcCCC---EE
Confidence            56776666653     357999999973  56666666543    333 344433222     466678889974   45


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      +.|+          +|.--|.++...+.
T Consensus       199 i~~~----------~n~~p~~~~~~~~~  216 (281)
T cd00408         199 ISGA----------ANVAPKLAVALYEA  216 (281)
T ss_pred             EehH----------HhhCHHHHHHHHHH
Confidence            5543          35555666555543

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=93.43  E-value=8.6  Score=37.84  Aligned_cols=206  Identities=19%  Similarity=0.154  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      .+-+++++.+.+.|++.+=+.-..... .. -....+++..+.+..+..+.+ .-+.+                      
T Consensus        30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~-~~-~~~n~~~i~~i~~~~~~pv~~-~GGi~----------------------   84 (254)
T TIGR00735        30 GDPVELAQRYDEEGADELVFLDITASS-EG-RTTMIDVVERTAETVFIPLTV-GGGIK----------------------   84 (254)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCccc-cc-ChhhHHHHHHHHHhcCCCEEE-ECCCC----------------------
Confidence            466889999999999988886332111 00 011123344443322333221 12222                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCC----------
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPV----------  296 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~----------  296 (452)
                       ..++++.++..|++.|.+-...                +++...+-+.++..| -++.+.|-. ...+.          
T Consensus        85 -s~~d~~~~~~~Ga~~vivgt~~----------------~~~p~~~~~~~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i  146 (254)
T TIGR00735        85 -SIEDVDKLLRAGADKVSINTAA----------------VKNPELIYELADRFGSQCIVVAIDA-KRVYVNSYCWYEVYI  146 (254)
T ss_pred             -CHHHHHHHHHcCCCEEEEChhH----------------hhChHHHHHHHHHcCCCCEEEEEEe-ccCCCCCCccEEEEE
Confidence             2358999999999998665321                111111222334445 344444431 11110          


Q ss_pred             -C-CCCCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHc
Q 012949          297 -E-GAIPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM  371 (452)
Q Consensus       297 -~-~r~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~a  371 (452)
                       . .........++++.+.++|++.|.+  -|..|.+.... .++++.+++..+ +|+-...    |... .-...++..
T Consensus       147 ~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~G----Gi~s~~di~~~~~~  220 (254)
T TIGR00735       147 YGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASG----GAGKPEHFYEAFTK  220 (254)
T ss_pred             eCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeC----CCCCHHHHHHHHHc
Confidence             0 0123456678889999999999988  55555443333 456788877764 3555543    2222 333455566


Q ss_pred             C-CCEE-eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          372 G-ISTV-DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       372 G-a~~V-D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      | |+.| -++..          -.|..+++++...|+..|+.+
T Consensus       221 g~~dgv~~g~a~----------~~~~~~~~~~~~~~~~~gi~~  253 (254)
T TIGR00735       221 GKADAALAASVF----------HYREITIGEVKEYLAERGIPV  253 (254)
T ss_pred             CCcceeeEhHHH----------hCCCCCHHHHHHHHHHCCCcc
Confidence            6 7764 22332          235578999999998887753

>PRK08508 biotin synthase; Provisional

Probab=93.39  E-value=0.58  Score=46.87  Aligned_cols=135  Identities=14%  Similarity=0.027  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA  340 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~  340 (452)
                      .|.|++++.+    +++++.|..- ..+.. .| +.....+.+++.++++.+.+.+.+ +.++-+.|.++++.+.+|-++
T Consensus        40 ~s~eeI~~~a----~~a~~~g~~~-~~lv~-sg-~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a  111 (279)
T PRK08508         40 KDIEQIVQEA----KMAKANGALG-FCLVT-SG-RGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA  111 (279)
T ss_pred             CCHHHHHHHH----HHHHHCCCCE-EEEEe-cc-CCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence            4666666544    6666677742 22211 11 111123568888999988876543 334446899887776666443


Q ss_pred             HHHhCCC-c----cEE--EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          341 VMAVVPV-E----KLA--VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       341 l~~~~p~-~----~l~--vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      =.+.++. .    .+-  ++.-.++.--+.....|-++|...-.+-+.|+||      .  .-...+.+..|+.++.+
T Consensus       112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~  181 (279)
T PRK08508        112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH  181 (279)
T ss_pred             CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence            1122221 0    010  1111223334445555778998888888999998      2  34555566666665544

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.31  E-value=2.5  Score=42.12  Aligned_cols=83  Identities=18%  Similarity=0.098  Sum_probs=50.7

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++.+.+.|++.|.+-++.-..    +.+.+..+..+.+.++++.+|+. ++.|.+-+..        -.+.+.+.++++
T Consensus       116 ~a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~  183 (289)
T cd02810         116 LARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAK  183 (289)
T ss_pred             HHHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHH
Confidence            5667777899988876543221    11111112234445556666654 5666543331        235678889999


Q ss_pred             HHHHCCcCEEEEcCCc
Q 012949          311 ELHDMGCFEISLGDTI  326 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~  326 (452)
                      .+.++|+|.|.+..+.
T Consensus       184 ~l~~~Gad~i~~~~~~  199 (289)
T cd02810         184 AAERAGADGLTAINTI  199 (289)
T ss_pred             HHHHcCCCEEEEEccc
Confidence            9999999999987654

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.30  E-value=7.1  Score=36.49  Aligned_cols=173  Identities=19%  Similarity=0.179  Sum_probs=97.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ++...-.+.++.+.+.|++.|+++..-.+ +.|...-..+..+.+++..+..+.+  ++-+.                  
T Consensus         9 ~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~------------------   69 (211)
T cd00429           9 ADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENP------------------   69 (211)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCH------------------
Confidence            56666778899999999999999642111 1111111113444555432222222  22111                  


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                             .+.++.+.++|++.|.+....++                ...+.++.+++.|+.+...+.     +.   ++.
T Consensus        70 -------~~~~~~~~~~g~dgv~vh~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~  118 (211)
T cd00429          70 -------ERYIEAFAKAGADIITFHAEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPV  118 (211)
T ss_pred             -------HHHHHHHHHcCCCEEEECccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCH
Confidence                   13678888999999877654332                223457888888987763221     11   123


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc----CCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          303 SKVAYVAKELHDMGCFEISLG----DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~----DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +.+.++.    + ++|.|.+-    -+.|...+....+.++.+++..+    ..++.+    ..|.-..|.-.++++|++
T Consensus       119 ~~~~~~~----~-~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v----~GGI~~env~~~~~~gad  189 (211)
T cd00429         119 EVLEPYL----D-EVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEV----DGGINLETIPLLAEAGAD  189 (211)
T ss_pred             HHHHHHH----h-hCCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEE----ECCCCHHHHHHHHHcCCC
Confidence            3333332    2 26666441    22333445566677777776654    334544    347888899999999999


Q ss_pred             EE
Q 012949          375 TV  376 (452)
Q Consensus       375 ~V  376 (452)
                      .|
T Consensus       190 ~i  191 (211)
T cd00429         190 VL  191 (211)
T ss_pred             EE
Confidence            66

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=93.29  E-value=2.8  Score=43.61  Aligned_cols=85  Identities=7%  Similarity=0.011  Sum_probs=59.7

Q ss_pred             HHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.+.+.. ++... ..+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+
T Consensus       100 ~e~l~~l~~~G~~rvsiGvqS~~~~~l-~~l~r~--~~~~~~~~~i~~l~~~g~~~v~~dli--~GlPgq---t~~~~~~  171 (377)
T PRK08599        100 KEKLQVLKDSGVNRISLGVQTFNDELL-KKIGRT--HNEEDVYEAIANAKKAGFDNISIDLI--YALPGQ---TIEDFKE  171 (377)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEeee--cCCCCC---CHHHHHH
Confidence            357788889999999998744 44332 334442  2345666788999999987 555555  666765   4678888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      .++.+.+.+++.|.+
T Consensus       172 ~l~~~~~l~~~~i~~  186 (377)
T PRK08599        172 SLAKALALDIPHYSA  186 (377)
T ss_pred             HHHHHHccCCCEEee
Confidence            888889999987755

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=93.25  E-value=6.5  Score=40.72  Aligned_cols=159  Identities=13%  Similarity=0.056  Sum_probs=99.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-C--CCcEEEEEEeeecCCCCCC-CCHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L--SIPVRGYVSCVVGCPVEGA-IPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~--G~~V~~~l~~~~g~p~~~r-~d~e~l~  306 (452)
                      +-++.+.+-|+..+-+..+....+...+-+.+.++.++.+.+.++.+++ .  |+.++.-++.       .| .+++...
T Consensus        74 ~~~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~-------~R~~~~e~~~  146 (345)
T cd01321          74 RLLEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYAT-------LRNFNDSEIK  146 (345)
T ss_pred             HHHHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEe-------cCCCCHHHHH
Confidence            4567788889988888776543333334678999999999888777654 3  5565533332       22 3456555


Q ss_pred             HHHHHHHHC---CcC-EEEEcCCcCC---C-cHHHHHHHHHHHHHhCCCccEEEEeCCCcC--cH-HHHHHHHHHcCCCE
Q 012949          307 YVAKELHDM---GCF-EISLGDTIGV---G-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QS-LPNILISLQMGIST  375 (452)
Q Consensus       307 ~~a~~l~~~---Gad-~I~L~DT~G~---~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--lA-~ANaLaAl~aGa~~  375 (452)
                      +.++.+.++   ..+ .+.+ |-.|-   . .|....+.++..++.-++.++.+|+=...+  .. ..|...|+..|+++
T Consensus       147 e~~~~a~~~~~~~~~~VvGi-dL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~R  225 (345)
T cd01321         147 ESMEQCLNLKKKFPDFIAGF-DLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKR  225 (345)
T ss_pred             HHHHHHHHHHHhCCCeEEEE-ecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCc
Confidence            555555443   122 2222 44442   2 367777888888876444689999976653  32 34788888999999


Q ss_pred             EeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          376 VDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       376 VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      |+=.+.=.             .-++++..|+..++
T Consensus       226 IGHG~~~~-------------~dp~ll~~l~~~~I  247 (345)
T cd01321         226 IGHGFALP-------------KHPLLMDLVKKKNI  247 (345)
T ss_pred             CccccccC-------------cCHHHHHHHHHcCC
Confidence            86555522             12566777765444

>PRK05904 coproporphyrinogen III oxidase; Provisional

Probab=93.23  E-value=4.5  Score=41.97  Aligned_cols=86  Identities=7%  Similarity=-0.025  Sum_probs=59.8

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.+-+..-+-.....+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+.
T Consensus       103 ~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI--~GlPgq---t~e~~~~t  175 (353)
T PRK05904        103 QSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFL--YCLPIL---KLKDLDEV  175 (353)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEe--ecCCCC---CHHHHHHH
Confidence            457888889999999988743332333344442  2344556778999999987 776666  566654   46788888


Q ss_pred             HHHHHHCCcCEEEE
Q 012949          309 AKELHDMGCFEISL  322 (452)
Q Consensus       309 a~~l~~~Gad~I~L  322 (452)
                      ++.+.+.+++.|.+
T Consensus       176 l~~~~~l~p~~is~  189 (353)
T PRK05904        176 FNFILKHKINHISF  189 (353)
T ss_pred             HHHHHhcCCCEEEE
Confidence            88888899886644

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=93.19  E-value=3.5  Score=42.61  Aligned_cols=136  Identities=18%  Similarity=0.083  Sum_probs=84.4

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~~  297 (452)
                      +..++|+++|.|.|.|...        .|+..  ...++|-|.++=.+.+.++++.+|+. |.+  |.+-++.    .+.
T Consensus       141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~----~D~  216 (353)
T cd02930         141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSM----LDL  216 (353)
T ss_pred             HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecc----ccc
Confidence            3556778899999998542        24433  23346778888888888888888874 544  3322331    121


Q ss_pred             --CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---c-------H-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          298 --GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---T-------P-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       298 --~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~-------P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                        +..+++...++++.+.++|+|.|.+  |.|..   +       | ....++.+.+++.++. ||..-.--+   ....
T Consensus       217 ~~~g~~~~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~---~~~~  290 (353)
T cd02930         217 VEGGSTWEEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI-PVIASNRIN---TPEV  290 (353)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCCC-CEEEcCCCC---CHHH
Confidence              2357888999999999999999988  33321   1       1 1134456777777653 454432211   2466


Q ss_pred             HHHHHHcC-CCEE
Q 012949          365 ILISLQMG-ISTV  376 (452)
Q Consensus       365 aLaAl~aG-a~~V  376 (452)
                      +..+++.| +|.|
T Consensus       291 a~~~i~~g~~D~V  303 (353)
T cd02930         291 AERLLADGDADMV  303 (353)
T ss_pred             HHHHHHCCCCChh
Confidence            77777776 5544

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=93.18  E-value=1.1  Score=46.56  Aligned_cols=118  Identities=15%  Similarity=0.113  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++++.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.... .++....+..++..+.++.+
T Consensus         5 ~~k~lL~~A~~~~yAVgA-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~   74 (347)
T PRK09196          5 SLRQLLDHAAEHGYGVPA-----FN-----VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP   74 (347)
T ss_pred             cHHHHHHHHHHcCceEEE-----ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence            356778899999987752     32     24678888999999999876 55554433 33344567888888888776


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc-------CCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA-------GLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~-------GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      .+|+.+|.  |-|........|+++|.+  ++|+|-.       .+-+         | .-|.+++.+.+.
T Consensus        75 ~VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~  134 (347)
T PRK09196         75 HIPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEY---------NVDVTRKVVEMAHA  134 (347)
T ss_pred             CCcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            45777665  666778889999999998  7799987       4444         3 445666666663

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.17  E-value=1.1  Score=47.62  Aligned_cols=72  Identities=14%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      ..+.++.+.++|+|.|.| |+.. ..+..+.++|+.+++.+|+..|-+..=-    -...+..++++|||.|-+   |+|
T Consensus       154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~----T~e~a~~l~~aGaD~I~v---G~g  224 (404)
T PRK06843        154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIV----TKEAALDLISVGADCLKV---GIG  224 (404)
T ss_pred             HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecC----CHHHHHHHHHcCCCEEEE---CCC
Confidence            456788899999999998 7776 4578899999999999997655444322    246778889999999984   555


Q ss_pred             C
Q 012949          385 G  385 (452)
Q Consensus       385 e  385 (452)
                      .
T Consensus       225 ~  225 (404)
T PRK06843        225 P  225 (404)
T ss_pred             C
Confidence            4

>PRK14057 epimerase; Provisional

Probab=93.16  E-value=3.7  Score=40.90  Aligned_cols=178  Identities=12%  Similarity=0.106  Sum_probs=102.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      +...-.+-++.|.+.|++.+=+-..- -.|+|.+.=..++++.++.  +..+-+  ++-+.                   
T Consensus        30 D~~~L~~el~~l~~~g~d~lHiDVMD-G~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P-------------------   87 (254)
T PRK14057         30 QWIALHRYLQQLEALNQPLLHLDLMD-GQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQ-------------------   87 (254)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeccC-CccCCccccCHHHHHHhcc--CCCeeEEeeeCCH-------------------
Confidence            44555677888889999977663110 0134554322345666654  222222  22111                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-------EEEEEEeeecCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-------VRGYVSCVVGCPV  296 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-------V~~~l~~~~g~p~  296 (452)
                            ...++..+++|++.|.+-.-+.                ..+.++++++|++|.+       +.+.|..   +|.
T Consensus        88 ------~~~i~~~~~aGad~It~H~Ea~----------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAl---nP~  142 (254)
T PRK14057         88 ------WTAAQACVKAGAHCITLQAEGD----------------IHLHHTLSWLGQQTVPVIGGEMPVIRGISL---CPA  142 (254)
T ss_pred             ------HHHHHHHHHhCCCEEEEeeccc----------------cCHHHHHHHHHHcCCCcccccccceeEEEE---CCC
Confidence                  1367888899999888765322                2345677888999974       2333432   232


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                         ++.+.+.+++..     +|.|-+    +.-.|..--..+.+-|+.+++..+...+.+-.-=|=|.-..|+-...++|
T Consensus       143 ---Tp~e~i~~~l~~-----vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aG  214 (254)
T PRK14057        143 ---TPLDVIIPILSD-----VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQG  214 (254)
T ss_pred             ---CCHHHHHHHHHh-----CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCC
Confidence               467777776653     343332    33445544455666667666654432222333347788889999999999


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      |+.+=+
T Consensus       215 ad~~V~  220 (254)
T PRK14057        215 IDRVVS  220 (254)
T ss_pred             CCEEEE
Confidence            996644

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=93.06  E-value=1.7  Score=42.79  Aligned_cols=151  Identities=15%  Similarity=0.056  Sum_probs=86.3

Q ss_pred             HHHHHHHHCCCCEEEEecCCC--CCccccc--CCHHHHHHHHHhccC-Cc-eeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSFVS--PKWVPQL--ADARDVMEAVRDLEG-AR-LPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s--~~~~p~~--~D~e~v~~~i~~~~~-~~-l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      --++.++++|++.|=+|+...  ....|..  -+.++++..++.+.. +. .++++. ..      .+|...+.++++  
T Consensus        23 ~sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD-~~------~G~g~~~~~~~~--   93 (240)
T cd06556          23 SMAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVAD-LP------FGAYGAPTAAFE--   93 (240)
T ss_pred             HHHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEe-CC------CCCCcCHHHHHH--
Confidence            457788899999999986421  1112221  245778887776543 22 233331 11      344544344433  


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CCCCC
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CPVEG  298 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p~~~  298 (452)
                            .+++..++|++-|+|-...              +.+    +.++.+++.++.|.+.+-..      .| ...-+
T Consensus        94 ------~~~~l~~aGa~gv~iED~~--------------~~~----~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~  149 (240)
T cd06556          94 ------LAKTFMRAGAAGVKIEGGE--------------WHI----ETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQY  149 (240)
T ss_pred             ------HHHHHHHcCCcEEEEcCcH--------------HHH----HHHHHHHHcCCeEEEEeCCchhhhhccCCceeec
Confidence                  6778888999999998752              222    34566677777664333210      00 00001


Q ss_pred             C--CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHH
Q 012949          299 A--IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLE  339 (452)
Q Consensus       299 r--~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~  339 (452)
                      +  ...+...+-+++..++|||.|.+.   +. .++.+.++.+
T Consensus       150 ~~~~~~~~ai~Ra~ay~~AGAd~i~~e---~~-~~e~~~~i~~  188 (240)
T cd06556         150 RGDEAGEQLIADALAYAPAGADLIVME---CV-PVELAKQITE  188 (240)
T ss_pred             cCHHHHHHHHHHHHHHHHcCCCEEEEc---CC-CHHHHHHHHH
Confidence            1  123456666788889999999996   33 5555554444

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=93.04  E-value=3.9  Score=41.95  Aligned_cols=138  Identities=22%  Similarity=0.221  Sum_probs=85.7

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~  297 (452)
                      +..++|+++|.|.|.|-..        .|+.  .....+|-+.++-.+.+.++++.+|+. |  +.|.+-++..-  ...
T Consensus       158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~--~~~  235 (336)
T cd02932         158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATD--WVE  235 (336)
T ss_pred             HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccc--cCC
Confidence            3566778899999888542        1222  223346778888888888999888874 3  44443343210  012


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC--------cHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVG--------TPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILIS  368 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~--------~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaA  368 (452)
                      ...+++...++++.+.++|+|.|.+.  .|..        .|....++++.+++.++. +|.. -.-.    ....+..+
T Consensus       236 ~g~~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G~i~----t~~~a~~~  308 (336)
T cd02932         236 GGWDLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAGI-PVIAVGLIT----DPEQAEAI  308 (336)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCCC-CEEEeCCCC----CHHHHHHH
Confidence            34578889999999999999999873  1211        122234667778887753 4432 2111    24567778


Q ss_pred             HHcC-CCEEe
Q 012949          369 LQMG-ISTVD  377 (452)
Q Consensus       369 l~aG-a~~VD  377 (452)
                      ++.| ||.|-
T Consensus       309 l~~g~aD~V~  318 (336)
T cd02932         309 LESGRADLVA  318 (336)
T ss_pred             HHcCCCCeeh
Confidence            8888 66653

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=92.96  E-value=3.7  Score=42.79  Aligned_cols=140  Identities=16%  Similarity=0.067  Sum_probs=85.7

Q ss_pred             HhHHHHHHcCCCEEEEEe--------cCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEEee--ecCCC
Q 012949          231 QGFEAAIAAGAKEVAIFA--------SASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCV--VGCPV  296 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~--------s~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G~~-V~~~l~~~--~g~p~  296 (452)
                      +..++|.++|.|.|.|-.        ..|+..++.  .+|-|.|+=.+-+.++++..|+. |-. |..-|+..  +.. .
T Consensus       163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~  241 (362)
T PRK10605        163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-V  241 (362)
T ss_pred             HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-C
Confidence            356778889999998853        233432222  36778888888888888888874 322 32223211  000 1


Q ss_pred             CCCCCHHH-HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          297 EGAIPPSK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       297 ~~r~d~e~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                      .+-.+++. ..++++.+.+.|+|.|.+...--...+.-...+.+.+|+.++. +|.+-.-.|    ...+..+++.| +|
T Consensus       242 ~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D  316 (362)
T PRK10605        242 DNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLID  316 (362)
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCC
Confidence            11246666 6899999999999999886421000111123456778888775 455544333    67788999998 66


Q ss_pred             EE
Q 012949          375 TV  376 (452)
Q Consensus       375 ~V  376 (452)
                      .|
T Consensus       317 ~V  318 (362)
T PRK10605        317 AV  318 (362)
T ss_pred             EE
Confidence            54

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=92.95  E-value=2.9  Score=41.63  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=55.3

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEc----CCcC----CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC--cHHHHHHHHHH
Q 012949          301 PPSKVAYVAKELHDMGCFEISLG----DTIG----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--QSLPNILISLQ  370 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~----DT~G----~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--lA~ANaLaAl~  370 (452)
                      +++.+.+.++.+.++|+|.|.|-    .+.+    .-.|..+.++++.+++.+ +.+|.+-.=-...  -...-+.++.+
T Consensus       109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~  187 (289)
T cd02810         109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER  187 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999977762    1111    236889999999999986 3466665443333  23445556678


Q ss_pred             cCCCEEeec
Q 012949          371 MGISTVDCS  379 (452)
Q Consensus       371 aGa~~VD~S  379 (452)
                      +||+.|.++
T Consensus       188 ~Gad~i~~~  196 (289)
T cd02810         188 AGADGLTAI  196 (289)
T ss_pred             cCCCEEEEE
Confidence            999988764

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=92.91  E-value=1.2  Score=44.98  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.++. .|.+.- +..+...+.+..++..+.++.+
T Consensus         5 ~~~~~l~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~   74 (284)
T PRK12737          5 STKNMLKKAQAEGYAVPA-----FN-----IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN   74 (284)
T ss_pred             cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC
Confidence            345777899999987752     21     23578888899999998876 444433 2223344667888888888775


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      . |+.+|.  |-|.-......|+++|.+  ++|+|-..+-+         | .-|-+++.+.+.
T Consensus        75 V-PValHL--DH~~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~  126 (284)
T PRK12737         75 I-PLALHL--DHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE---------NIAIVKEVVEFCHR  126 (284)
T ss_pred             C-CEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            3 666654  677778999999999998  77999887665         4 445566666663

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=92.90  E-value=2.3  Score=43.68  Aligned_cols=104  Identities=20%  Similarity=0.160  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---c-----CCcCCCcHH
Q 012949          262 SIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---G-----DTIGVGTPG  332 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~  332 (452)
                      ..++.++.+.    .++ +.+..+.+.|..         .+++.+.++++.+.++|+|.|.|   +     +..|...+.
T Consensus        85 g~d~~~~~i~----~~~~~~~~pvi~sI~g---------~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~  151 (334)
T PRK07565         85 GPEEYLELIR----RAKEAVDIPVIASLNG---------SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQ  151 (334)
T ss_pred             CHHHHHHHHH----HHHHhcCCcEEEEecc---------CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHH
Confidence            3445554443    333 335666655531         34678889999999999998888   2     334555556


Q ss_pred             HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          333 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       333 ~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+.++++.+++..+ +||.+..=-+......-+.++.++||+.|..+
T Consensus       152 ~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~  197 (334)
T PRK07565        152 RYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAAGADGLVLF  197 (334)
T ss_pred             HHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHcCCCeEEEE
Confidence            78899999998764 46777754443323334445567999988653

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.90  E-value=4.6  Score=39.19  Aligned_cols=145  Identities=15%  Similarity=0.162  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      -.+-|..|.++|++.|-.|--+.. -..|..  .+++...+.+..  ..++.++...                       
T Consensus        56 t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~--d~ei~~~ie~~~--~v~vvTts~A-----------------------  108 (238)
T COG3473          56 TERAALELADAGVDVIVYGCTSGSLIGGPGY--DKEIAQRIEEAK--GVPVVTTSTA-----------------------  108 (238)
T ss_pred             HHHHHHhcCccccCEEEEeccceeeecCCch--hHHHHHHHHhcc--CCceeechHH-----------------------
Confidence            345577889999999998732211 011211  345666666544  3455555432                       


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKV  305 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l  305 (452)
                         -++.....|+.+|.+..+-.+               +--+..+++..+.|++|.=..+  .|-++.   +|.+|..+
T Consensus       109 ---vv~aL~al~a~ri~vlTPY~~---------------evn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~  168 (238)
T COG3473         109 ---VVEALNALGAQRISVLTPYID---------------EVNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAV  168 (238)
T ss_pred             ---HHHHHHhhCcceEEEeccchh---------------hhhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHH
Confidence               566777789999999987544               2223556788889999753333  233442   68899999


Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .++++++..-++|.|.+.     .+-.+..+.|..+-+..+
T Consensus       169 y~lAk~~~~~~~DaiFiS-----CTnlRt~eii~~lE~~~G  204 (238)
T COG3473         169 YRLAKEVFTPDADAIFIS-----CTNLRTFEIIEKLERDTG  204 (238)
T ss_pred             HHHHHHhcCCCCCeEEEE-----eeccccHHHHHHHHHHhC
Confidence            999999998899999886     455667777887777654

>PRK13745 anaerobic sulfatase-maturase; Provisional

Probab=92.89  E-value=6.9  Score=41.33  Aligned_cols=146  Identities=12%  Similarity=0.047  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcccccCCH---HHHHHHHHhc-c--CCceeEEecchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADA---RDVMEAVRDL-E--GARLPVLTPNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~-~--~~~l~~l~~~~~~~i~r~~~~~~  216 (452)
                      .++.+.-.++++.+.+. |++.+.+.+...   .|-+...   .++++.+++. .  ++.+...+-+..           
T Consensus        47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GG---EPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~l-----------  112 (412)
T PRK13745         47 VMSDELLEKFIKEYINSQTMPQVLFTWHGG---ETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTL-----------  112 (412)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCeEEEEEEcc---ccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEe-----------
Confidence            47888888888887764 778888876432   2444321   2233443321 1  223333232221           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                                 ...+-++...+.++ .|.|.+ +..+.|-.......-..+++++.+.++.+++.|+++.  +.+++   
T Consensus       113 -----------l~~e~~~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv---  175 (412)
T PRK13745        113 -----------LTDEWCEFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV---  175 (412)
T ss_pred             -----------CCHHHHHHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE---
Confidence                       11234566677786 777765 3333443222111112357777777888889998765  34333   


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                        ++.+.+.+.++++.+.+.|++.+.+
T Consensus       176 --~~~n~~~~~e~~~~~~~lg~~~~~~  200 (412)
T PRK13745        176 --NDFNADYPLDFYHFFKELDCHYIQF  200 (412)
T ss_pred             --cCCccccHHHHHHHHHHcCCCeEEE
Confidence              3444567777888888999987765

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=92.89  E-value=0.86  Score=43.46  Aligned_cols=174  Identities=14%  Similarity=0.076  Sum_probs=95.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE---Eecchhhhhhhhhhhhhccchh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV---LTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~---l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .+.++.+++++.+.+. +..+|+|.+--..      ...++++.+++.....+-.   .+++..                
T Consensus        13 ~~~~~~~~~~~~~~~~-~~~vk~g~~l~~~------~G~~~v~~ir~~~~i~~D~k~~di~~~~----------------   69 (215)
T PRK13813         13 TDRERALKIAEELDDY-VDAIKVGWPLVLA------SGLGIIEELKRYAPVIADLKVADIPNTN----------------   69 (215)
T ss_pred             CCHHHHHHHHHhcccc-CCEEEEcHHHHHh------hCHHHHHHHHhcCCEEEEeeccccHHHH----------------
Confidence            4567777777777554 5799999642111      1124566666543111000   011110                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              ...++.+.++|+|.|.+..-...               +.+.++++.+++.|.++.+.+...  .+.....-
T Consensus        70 --------~~~~~~~~~~gad~vtvh~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~  124 (215)
T PRK13813         70 --------RLICEAVFEAGAWGIIVHGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFI  124 (215)
T ss_pred             --------HHHHHHHHhCCCCEEEEcCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCH
Confidence                    01346788899998887764322               234567888999999886544321  11111111


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH--HHHHHHHcCCCEEee
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP--NILISLQMGISTVDC  378 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A--NaLaAl~aGa~~VD~  378 (452)
                      .+++..++....+.|.+...+.-        ...+.++.+++..+. .+.+   =|-|....  |.-.++++|++.+-.
T Consensus       125 ~~~~~~v~~m~~e~G~~g~~~~~--------~~~~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV~  191 (215)
T PRK13813        125 QPHADKLAKLAQEAGAFGVVAPA--------TRPERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVIV  191 (215)
T ss_pred             HHHHHHHHHHHHHhCCCeEEECC--------CcchhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence            24566677778888987664321        112344566665543 1111   23344433  478899999997633

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=92.88  E-value=0.7  Score=47.58  Aligned_cols=77  Identities=21%  Similarity=0.240  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccEEEEe---------CCCcCcHHHHHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILIS  368 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l~vH~---------Hnd~GlA~ANaLaA  368 (452)
                      +.++|.+.+.++.+.+.|+.+|.|.+- .-...++.+.++++.+++.+|.  +.+|+         |.+.|+-....+..
T Consensus        69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~  146 (343)
T TIGR03551        69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR  146 (343)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            358999999999999999999999832 2234677889999999998886  44554         66888888887777


Q ss_pred             H-HcCCCEEe
Q 012949          369 L-QMGISTVD  377 (452)
Q Consensus       369 l-~aGa~~VD  377 (452)
                      + +||++.+.
T Consensus       147 LkeAGl~~i~  156 (343)
T TIGR03551       147 LKEAGLDSMP  156 (343)
T ss_pred             HHHhCccccc
Confidence            7 58999886

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=92.86  E-value=3.2  Score=40.98  Aligned_cols=236  Identities=16%  Similarity=0.160  Sum_probs=123.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhcc
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      ...++=.+|+.+++   ++|||.||+...-+-+-.--+. +.++....++.+  .+++++.+|-...    |=+-|+.-.
T Consensus        15 p~~~sW~erl~~AK---~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaH----RRfPfGS~D   87 (287)
T COG3623          15 PNGFSWLERLALAK---ELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAH----RRFPFGSKD   87 (287)
T ss_pred             cCCCCHHHHHHHHH---HcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhh----ccCCCCCCC
Confidence            34578888888876   5799999998653322111111 234455555543  4555555441111    111122212


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                      +...++..-+..+.++.|.+.|++.|.+.--  |++-+..-.-|++.-++.++.+++.|.+.++...+.||..   |+  
T Consensus        88 ~~~r~~aleiM~KaI~LA~dLGIRtIQLAGY--DVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt---pf--  160 (287)
T COG3623          88 EATRQQALEIMEKAIQLAQDLGIRTIQLAGY--DVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDT---PF--  160 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCceeEeeccc--eeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc---HH--
Confidence            2222222223446888899999999887421  2221211223566677888888999988887665555531   11  


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ..+.+....+.+.+.  .+--..++| +|-++... .++...+.--.+- ...+|+-||+-.-      .-..|. .=| 
T Consensus       161 m~sIsk~~~~~~~I~--sP~f~vYPD-iGNlsaw~-ndv~~El~lG~~~-I~aiHlKDTy~vt------e~~~Gq-Frd-  227 (287)
T COG3623         161 MNSISKWLKYDKYIN--SPWFTVYPD-IGNLSAWN-NDVQSELQLGIDK-IVAIHLKDTYAVT------ETSPGQ-FRD-  227 (287)
T ss_pred             HHHHHHHHHHHHHhC--CCcEEecCC-cccHhhhh-hhHHHHHHcCcCc-eEEEEeccccccc------ccCCCc-ccc-
Confidence            112333333333332  133444556 45555433 2333444332333 4789999997421      001110 011 


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949          379 SVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNV  414 (452)
Q Consensus       379 Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i  414 (452)
                        ..+|        .|++.-+++...|+.+++...+
T Consensus       228 --vpfG--------eG~Vdf~~~f~~lk~~ny~gpf  253 (287)
T COG3623         228 --VPFG--------EGCVDFEECFKTLKQLNYRGPF  253 (287)
T ss_pred             --CCcC--------CcchhHHHHHHHHHHhCCCCce
Confidence              1233        4899999999999987765443

>cd04732 HisA HisA

Probab=92.82  E-value=9.3  Score=36.58  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ..+-+++++.+.+.|++.+-+--...- ....-.+ .+....+++..+..+.+ .-+.+                     
T Consensus        28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~~-~~~i~~i~~~~~~pv~~-~GgI~---------------------   83 (234)
T cd04732          28 SDDPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPVN-LELIEEIVKAVGIPVQV-GGGIR---------------------   83 (234)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCcc-ccCCCCC-HHHHHHHHHhcCCCEEE-eCCcC---------------------
Confidence            457788999999999999888522110 0000012 23444444332333322 11111                     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCC--CCC-CCCH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCP--VEG-AIPP  302 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p--~~~-r~d~  302 (452)
                        ..++++.+++.|++.|.+-...                ++....+.+.+++.|. .+...+-.-.+..  ... ..+.
T Consensus        84 --~~e~~~~~~~~Gad~vvigs~~----------------l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~  145 (234)
T cd04732          84 --SLEDIERLLDLGVSRVIIGTAA----------------VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSE  145 (234)
T ss_pred             --CHHHHHHHHHcCCCEEEECchH----------------HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecC
Confidence              2358888999999988654321                1211222333445554 3443332110000  000 1123


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-HHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-NaLaAl~aGa~~VD  377 (452)
                      ....++++.+.+.|++.|.+-|.  .|.... .-.++++.+++..+ +|+-.-+    |.... ....++..||+.|=
T Consensus       146 ~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g-~~~~~i~~i~~~~~-ipvi~~G----Gi~~~~di~~~~~~Ga~gv~  217 (234)
T cd04732         146 VSLEELAKRFEELGVKAIIYTDISRDGTLSG-PNFELYKELAAATG-IPVIASG----GVSSLDDIKALKELGVAGVI  217 (234)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeecCCCccCC-CCHHHHHHHHHhcC-CCEEEec----CCCCHHHHHHHHHCCCCEEE
Confidence            34567888889999998888765  444444 22567788877664 3555533    22222 34555667887553

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK06294 coproporphyrinogen III oxidase; Provisional

Probab=92.81  E-value=4.3  Score=42.29  Aligned_cols=86  Identities=12%  Similarity=0.018  Sum_probs=60.1

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.+-+..-+-.....+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+-
T Consensus       103 ~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~--~~~~~~~~ai~~~~~~g~~~v~~Dli--~GlPgq---t~~~~~~~  175 (370)
T PRK06294        103 ESYIRALALTGINRISIGVQTFDDPLLKLLGRT--HSSSKAIDAVQECSEHGFSNLSIDLI--YGLPTQ---SLSDFIVD  175 (370)
T ss_pred             HHHHHHHHHCCCCEEEEccccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            357888889999999887743332333344432  1234455677899999996 766665  676765   57888888


Q ss_pred             HHHHHHCCcCEEEE
Q 012949          309 AKELHDMGCFEISL  322 (452)
Q Consensus       309 a~~l~~~Gad~I~L  322 (452)
                      ++.+.+.+++.|.+
T Consensus       176 l~~~~~l~~~~is~  189 (370)
T PRK06294        176 LHQAITLPITHISL  189 (370)
T ss_pred             HHHHHccCCCeEEE
Confidence            99999999987765

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=92.79  E-value=2.6  Score=43.24  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=66.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE---c-----CCcCCCcHHH
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL---G-----DTIGVGTPGT  333 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~  333 (452)
                      ..+..++.+.+.   .++.+..+.++|.   |      .+++.+.++++.+.++|+|.|.|   +     +-.|...++.
T Consensus        83 g~~~~~~~i~~~---~~~~~~pvi~si~---g------~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~  150 (325)
T cd04739          83 GPEEYLELIRRA---KRAVSIPVIASLN---G------VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQR  150 (325)
T ss_pred             CHHHHHHHHHHH---HhccCCeEEEEeC---C------CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHH
Confidence            344445544332   1233666665542   1      35688889999999999987655   1     3344445677


Q ss_pred             HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          334 VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       334 v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.++++.+++... +||.+-.--++.....-+.++.++||+.|..
T Consensus       151 ~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~  194 (325)
T cd04739         151 YLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAAGADGLVL  194 (325)
T ss_pred             HHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence            8899999998764 4677766555554555666677899997754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK15063 isocitrate lyase; Provisional

Probab=92.77  E-value=7.4  Score=41.54  Aligned_cols=195  Identities=15%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             hHHHHHHcCCCEEEEEecCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC---------
Q 012949          232 GFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---------  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd----~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~---------  298 (452)
                      -++..+++|+..|+|-+.+..    -|...+-=.+.++.++++..+...+...|.+.. -+..+    |+-         
T Consensus       166 ~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~v-IiART----DA~aa~li~s~~  240 (428)
T PRK15063        166 LMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTL-VIART----DAEAADLLTSDV  240 (428)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeE-EEEEC----Cccccccccccc
Confidence            678888999999999988653    122211114789999999777666666787632 12221    110         


Q ss_pred             -----------C---------CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          299 -----------A---------IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       299 -----------r---------~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                                 |         .-.+...+=++...+ |||.|.+.  .|.-++++++++.+.++..+|+..+.+=+--.+
T Consensus       241 d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~E--t~~~d~ee~~~fa~~v~~~~P~~~layn~sPsf  317 (428)
T PRK15063        241 DERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCE--TSTPDLEEARRFAEAIHAKFPGKLLAYNCSPSF  317 (428)
T ss_pred             cccccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeC--CCCCCHHHHHHHHHhhcccCccceeecCCCCCc
Confidence                       0         112333333444555 99999874  234688999999999988788543333100010


Q ss_pred             C----cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHh
Q 012949          359 G----QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       359 G----lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      -    |.   +++ .-..-++|..++=.++.|+        ++-|.++++++..++..|..-=+   .|. =.++..+.-
T Consensus       318 nW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~--------ha~~~a~~~~a~~~~~~Gm~ay~---~~Q-~~e~~~~~~  385 (428)
T PRK15063        318 NWKKNLDDATIAKFQRELGAMGYKFQFITLAGF--------HSLNYSMFDLAHGYAREGMAAYV---ELQ-EAEFAAEER  385 (428)
T ss_pred             ccccccCHHHHHHHHHHHHHcCceEEEechHHH--------HHHHHHHHHHHHHHHHhccHHHH---HHH-HHHHHHHhc
Confidence            0    11   122 2333369999999999988        56789999999998876542111   122 222333456


Q ss_pred             CCCCCCCcccccchhh
Q 012949          431 GRPSGSKTAIALNRIA  446 (452)
Q Consensus       431 g~~~p~~~pi~G~~vf  446 (452)
                      |+..-.++-.+|.+-|
T Consensus       386 g~~~~~hq~~~G~~y~  401 (428)
T PRK15063        386 GYTAVKHQREVGTGYF  401 (428)
T ss_pred             CcceeechhhccccHH
Confidence            7766677777776655

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=92.76  E-value=5.4  Score=41.19  Aligned_cols=118  Identities=15%  Similarity=0.187  Sum_probs=78.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.+.+.|++.+.|.-.  +.              .+ ..+++++.+.|.+|.  |+       .+..+.+.+...++.
T Consensus       101 svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~Ei~~Av~~  154 (329)
T TIGR03569       101 SADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEEIEAAVGV  154 (329)
T ss_pred             HHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHHHHHHHHH
Confidence            666667778887776532  21              11 245566667788876  44       234578888888888


Q ss_pred             HHHCCcC--EEEE--cCCcCCCcHHHHHH--HHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          312 LHDMGCF--EISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       312 l~~~Gad--~I~L--~DT~G~~~P~~v~~--li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      +.+.|..  .|.|  | +.++-+|....+  .|..+++.++ .+|++=-|- .|  ...+++|+..||++|+-=+
T Consensus       155 i~~~G~~~~~i~llhC-~s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt-~G--~~~~~aAvalGA~iIEkH~  224 (329)
T TIGR03569       155 LRDAGTPDSNITLLHC-TTEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT-LG--IEAPIAAVALGATVIEKHF  224 (329)
T ss_pred             HHHcCCCcCcEEEEEE-CCCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC-cc--HHHHHHHHHcCCCEEEeCC
Confidence            8888875  2444  5 345556655433  3778888886 589985444 34  5777999999999886433

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.74  E-value=6.5  Score=41.92  Aligned_cols=147  Identities=16%  Similarity=0.184  Sum_probs=86.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCC-c-ccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPK-W-VPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQ  215 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~-~-~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~  215 (452)
                      ..+.++.++-++.|.+.|++.|.+...   .... . .+......++++.+..+.+.   ++....|..           
T Consensus       175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~-----------  243 (444)
T PRK14325        175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRD-----------  243 (444)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCccc-----------
Confidence            467888888899999999998876521   1100 0 01011345566665544332   221111110           


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEe
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSC  290 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~  290 (452)
                                  ...+-++...+.|  ...+++.+ +.|+.-++ ..|+.  ...+.+.++++.+++.  |+.+.++++ 
T Consensus       244 ------------~~~ell~~l~~~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I-  307 (444)
T PRK14325        244 ------------FTDDLIEAYADLPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI-  307 (444)
T ss_pred             ------------CCHHHHHHHHcCCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE-
Confidence                        1223456666664  67788765 55554443 33433  3445667788888887  667776666 


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                       +|.|.++   .+.+.+..+.+.+.+.+.+.
T Consensus       308 -vG~PgET---~ed~~~tl~~i~~~~~~~~~  334 (444)
T PRK14325        308 -VGFPGET---DEDFEATMKLIEDVGFDQSF  334 (444)
T ss_pred             -EECCCCC---HHHHHHHHHHHHhcCCCeee
Confidence             6778774   57777777777788877654

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=92.71  E-value=2.1  Score=43.35  Aligned_cols=107  Identities=9%  Similarity=0.015  Sum_probs=74.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--------------
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--------------  326 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--------------  326 (452)
                      .+.++.+..++.++..   ..++|.+.       .+.+ -++..+.+.++.+.++|+..|.|-|.+              
T Consensus        61 ~~~~e~~~~~~~I~~a---~~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~  129 (285)
T TIGR02320        61 ASWTQRLDVVEFMFDV---TTKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ  129 (285)
T ss_pred             CCHHHHHHHHHHHHhh---cCCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence            3567777766555443   35665421       2445 689999999999999999999999975              


Q ss_pred             CCCcHHHHHHHHHHHHHh-C-CCccEEEE----e-CCCcCcHHHHHHHHHHcCCCEEee
Q 012949          327 GVGTPGTVVPMLEAVMAV-V-PVEKLAVH----L-HDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       327 G~~~P~~v~~li~~l~~~-~-p~~~l~vH----~-Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .+.++++..+.|++.++. . ++..|-..    . ...+--|+.-+.++.+||||.|=.
T Consensus       130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv  188 (285)
T TIGR02320       130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI  188 (285)
T ss_pred             cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence            356788888888888875 2 22233223    1 113446788888999999997755

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=92.70  E-value=1.9  Score=44.06  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      +.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+... |.+... ..++.+..+..+++.+.++.+.
T Consensus         5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~   74 (307)
T PRK05835          5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_pred             HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence            45777899999987642     21     246788999999999988764 444332 2234456677788888887764


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS  406 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~  406 (452)
                      +|+.+|.  |-|.-+.....|+++|.+  ++|+|-..+-+         | .-|-+++.+.+
T Consensus        75 VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vve~Ah  125 (307)
T PRK05835         75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAH  125 (307)
T ss_pred             CeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH---------HHHHHHHHHHHHH
Confidence            5677654  777789999999999998  77999876655         4 34556666665

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=92.69  E-value=1.5  Score=43.21  Aligned_cols=136  Identities=17%  Similarity=0.185  Sum_probs=86.4

Q ss_pred             HHHHHHcCCCEEEEEecCChH-HHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEA-FSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~-~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .+.+.++|++.+.+.-+.--. +-.. ....+.++.+..+..+.+.+   .+++.+.+-.       +-.+++.+.+.++
T Consensus        22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~~-------G~g~~~~~~~~v~   91 (243)
T cd00377          22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADADT-------GYGNALNVARTVR   91 (243)
T ss_pred             HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcCC-------CCCCHHHHHHHHH
Confidence            344556688877664321110 0000 01335677777766655544   4555433321       2236688889999


Q ss_pred             HHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCC-ccEEE-Ee-----C--CCcCcHHHHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPV-EKLAV-HL-----H--DTYGQSLPNILISLQ  370 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~-~~l~v-H~-----H--nd~GlA~ANaLaAl~  370 (452)
                      .+.+.|+..|.|-|..+           +.++++..+.|++.++...+ .++-+ --     .  +...-|+.-+.++.+
T Consensus        92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~  171 (243)
T cd00377          92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE  171 (243)
T ss_pred             HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence            99999999999988763           56888889999998887653 12222 22     1  456668899999999


Q ss_pred             cCCCEEee
Q 012949          371 MGISTVDC  378 (452)
Q Consensus       371 aGa~~VD~  378 (452)
                      +|||.|=.
T Consensus       172 AGAD~v~v  179 (243)
T cd00377         172 AGADGIFV  179 (243)
T ss_pred             cCCCEEEe
Confidence            99997644

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=92.65  E-value=12  Score=37.52  Aligned_cols=197  Identities=12%  Similarity=0.089  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.+.-.++++.|.+ .|++-|=+......  .+.+. .+|-.+.++   +..+-++++++--..          ....
T Consensus        20 ~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE--~~~Ls-~eEr~~~~~~~~~~~~~~~~viagvg~----------~~t~   86 (293)
T PRK04147         20 QIDEQGLRRLVRFNIEKQGIDGLYVGGSTGE--AFLLS-TEEKKQVLEIVAEEAKGKVKLIAQVGS----------VNTA   86 (293)
T ss_pred             CcCHHHHHHHHHHHHhcCCCCEEEECCCccc--cccCC-HHHHHHHHHHHHHHhCCCCCEEecCCC----------CCHH
Confidence            4789999999999999 99998877543221  12332 233333333   222223333321000          0001


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--  297 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--  297 (452)
                      +        ..+-.+.|.++|+|.|.+..+.   +    +..+.++.++-+.++++.   .+++|..|     ..|..  
T Consensus        87 ~--------ai~~a~~a~~~Gad~v~v~~P~---y----~~~~~~~l~~~f~~va~a---~~lPv~iY-----n~P~~tg  143 (293)
T PRK04147         87 E--------AQELAKYATELGYDAISAVTPF---Y----YPFSFEEICDYYREIIDS---ADNPMIVY-----NIPALTG  143 (293)
T ss_pred             H--------HHHHHHHHHHcCCCEEEEeCCc---C----CCCCHHHHHHHHHHHHHh---CCCCEEEE-----eCchhhc
Confidence            1        1235577888999999987653   1    234555666555555443   46676532     23432  


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ...+++.+.++++    . ...+.++|+.|-  +.++.+++    +..++. .-+-+++      ...+.++.+|++.. 
T Consensus       144 ~~l~~~~l~~L~~----~-pnvvgiK~s~~d--~~~~~~~~----~~~~~~-~v~~G~d------~~~~~~l~~G~~G~-  204 (293)
T PRK04147        144 VNLSLDQFNELFT----L-PKVIGVKQTAGD--LYQLERIR----KAFPDK-LIYNGFD------EMFASGLLAGADGA-  204 (293)
T ss_pred             cCCCHHHHHHHhc----C-CCEEEEEeCCCC--HHHHHHHH----HhCCCC-EEEEeeh------HHHHHHHHcCCCEE-
Confidence            2456777776653    2 479999999773  45555543    344542 3455554      33456778997533 


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                        +.|          .+|.--|.++...+.
T Consensus       205 --is~----------~~n~~p~~~~~l~~~  222 (293)
T PRK04147        205 --IGS----------TYNVNGWRARQIFEA  222 (293)
T ss_pred             --Eec----------hhhhCHHHHHHHHHH
Confidence              332          345555666665553

>PRK05799 coproporphyrinogen III oxidase; Provisional

Probab=92.60  E-value=7.4  Score=40.36  Aligned_cols=85  Identities=9%  Similarity=0.078  Sum_probs=59.7

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.|-+ +.+|... ..+|+.  ...+.+.++++.+++.|++ |.+.++  +|.|..   +.+.+.+
T Consensus        99 ~e~l~~l~~~G~~rvsiGvqS~~d~~L-~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~GlPgq---t~e~~~~  170 (374)
T PRK05799         99 EEKLKILKSMGVNRLSIGLQAWQNSLL-KYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FGLPNQ---TLEDWKE  170 (374)
T ss_pred             HHHHHHHHHcCCCEEEEECccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cCCCCC---CHHHHHH
Confidence            3578888899999888876 4444333 334541  1244455677899999986 666665  566655   4788888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      .++.+.+.|++.|.+
T Consensus       171 ~l~~~~~l~~~~is~  185 (374)
T PRK05799        171 TLEKVVELNPEHISC  185 (374)
T ss_pred             HHHHHHhcCCCEEEE
Confidence            999999999988765

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=92.59  E-value=1.3  Score=44.86  Aligned_cols=117  Identities=14%  Similarity=0.125  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+... ..+...+.+..++..+.++..
T Consensus         5 ~~k~il~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~   74 (284)
T PRK09195          5 STKQMLNNAQRGGYAVPA-----FN-----IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH   74 (284)
T ss_pred             cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence            346777899999987742     21     23578888899999998876 4555432 234444567888888888775


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                       +|+.+|.  |-|.-+.....|+++|.+  ++|+|-..+-+         | .-|-+++.+.+.
T Consensus        75 -VPV~lHL--DHg~~~e~i~~Ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~  126 (284)
T PRK09195         75 -HPLALHL--DHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQ---------NISLVKEVVDFCHR  126 (284)
T ss_pred             -CCEEEEC--CCCCCHHHHHHHHHcCCCEEEeCCCCCCHHH---------HHHHHHHHHHHHHH
Confidence             3666654  677778999999999998  77999886655         4 445566665553

>TIGR01430 aden_deam adenosine deaminase

Probab=92.54  E-value=9.7  Score=38.58  Aligned_cols=133  Identities=16%  Similarity=0.104  Sum_probs=79.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ..++.++..|+..+.+..... .  ..+.|.+.++.++.+.+.++.++ +.|+.+..-++. +   .  ..+++.+.+.+
T Consensus        76 ~~~~e~~~~Gv~y~E~r~~p~-~--~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~---r--~~~~~~~~~~~  146 (324)
T TIGR01430        76 EYVEKAAKDGVVYAEVFFDPQ-L--HTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M---R--HKQPEAAEETL  146 (324)
T ss_pred             HHHHHHHHcCCEEEEEEeCcc-c--cccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e---C--CCCHHHHHHHH
Confidence            466778889998777765421 1  22457889999998878776654 578776544442 1   1  12466777777


Q ss_pred             HHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEE
Q 012949          310 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTV  376 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~V  376 (452)
                      +.+.+.+.+.|.=.|..|   ...|+.+...+...++ . +.++.+|++.+.+.  .+...++ +.|++++
T Consensus       147 ~~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~-~-g~~i~~Ha~E~~~~--~~~~~~~~~~g~~ri  213 (324)
T TIGR01430       147 ELAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIARE-L-GLHLTVHAGELGGP--ESVREALDDLGATRI  213 (324)
T ss_pred             HHHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHH-C-CCCeEEecCCCCCh--HHHHHHHHHcCchhc
Confidence            766666554222113332   2235666666665554 3 45788888876332  2334455 5787643

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=92.49  E-value=2  Score=43.49  Aligned_cols=115  Identities=16%  Similarity=0.087  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE-EcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS-LGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~-L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      +.++.+.|++.|+-|- .    |.     -.+.+.+..+++.+.+.+...|- +... .-......+..+++.+.++.+ 
T Consensus         6 ~k~iL~~A~~~~yAV~-A----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-   74 (286)
T PRK12738          6 TKYLLQDAQANGYAVP-A----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-   74 (286)
T ss_pred             HHHHHHHHHHCCceEE-E----EE-----eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-
Confidence            4577789999998774 2    21     23578888899999999877443 3322 223445667888888888875 


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS  406 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~  406 (452)
                      +|+.+|.  |-|..+.....|+++|.+  ++|+|-..+-+         | .-|-+++.+.+
T Consensus        75 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~evv~~Ah  125 (286)
T PRK12738         75 MPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCH  125 (286)
T ss_pred             CCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCCCHHH---------HHHHHHHHHHHHH
Confidence            4677654  778889999999999998  77999876655         4 44555666555

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=92.43  E-value=1.5  Score=44.39  Aligned_cols=134  Identities=16%  Similarity=0.248  Sum_probs=88.5

Q ss_pred             HHHHHHcCCCEEEEEe-cCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFA-SASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~-~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ...+.+.|.+-+.+.- +++...--.-++ .|.++.+..++++++.   -.++|.+.+-.-||       ++..+.+.++
T Consensus        31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvartV~  100 (289)
T COG2513          31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGFG-------EALNVARTVR  100 (289)
T ss_pred             HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHHHH
Confidence            3456667777665531 111100000012 2477777776665543   47777765554443       4778899999


Q ss_pred             HHHHCCcCEEEEcCCcCC-----------CcHHHHHHHHHHHHHhCCCccEE------EEeCCCcCcHHHHHHHHHHcCC
Q 012949          311 ELHDMGCFEISLGDTIGV-----------GTPGTVVPMLEAVMAVVPVEKLA------VHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~-----------~~P~~v~~li~~l~~~~p~~~l~------vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      .+.++|+..|.|-|.++-           ..++.+.+.|++.++..++..+-      ...+.-+.-|+.-+.+=++|||
T Consensus       101 ~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGA  180 (289)
T COG2513         101 ELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGA  180 (289)
T ss_pred             HHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCC
Confidence            999999999999999983           56778888888888877643332      2344446778888899999999


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      |.|
T Consensus       181 D~i  183 (289)
T COG2513         181 DAI  183 (289)
T ss_pred             cEE
Confidence            976

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=92.42  E-value=0.11  Score=49.90  Aligned_cols=170  Identities=18%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ..-.+-++.|.++|++.+=+-..- -.++|.+.=..+.++.+++.++..+-+.  +.+-.                    
T Consensus        12 ~~l~~~i~~l~~~g~d~lHiDiMD-g~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~--------------------   70 (201)
T PF00834_consen   12 LNLEEEIKRLEEAGADWLHIDIMD-GHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPE--------------------   70 (201)
T ss_dssp             GGHHHHHHHHHHTT-SEEEEEEEB-SSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGG--------------------
T ss_pred             HHHHHHHHHHHHcCCCEEEEeecc-cccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHH--------------------
Confidence            344567788999999966553211 1134555434567888887766555542  22211                    


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                           +-++..+++|++.|.+-.-                +.+...++++++|++|+++...|.     |.   ++.+.+
T Consensus        71 -----~~i~~~~~~g~~~i~~H~E----------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~  121 (201)
T PF00834_consen   71 -----RYIEEFAEAGADYITFHAE----------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEEL  121 (201)
T ss_dssp             -----GHHHHHHHHT-SEEEEEGG----------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGG
T ss_pred             -----HHHHHHHhcCCCEEEEccc----------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHH
Confidence                 2677888999997776542                234455778999999999875553     32   344555


Q ss_pred             HHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCC----ccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          306 AYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~----~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+++.     -+|.|-+    +...|...-..+.+-|+.+++..+.    ..|++    |=|.-..|+-...++||+.+
T Consensus       122 ~~~l~-----~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~  191 (201)
T PF00834_consen  122 EPYLD-----QVDMVLVMSVEPGFGGQKFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF  191 (201)
T ss_dssp             TTTGC-----CSSEEEEESS-TTTSSB--HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred             HHHhh-----hcCEEEEEEecCCCCcccccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            44433     2564443    2334443333455555555554432    34554    66777788888999999965

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=92.40  E-value=1.6  Score=45.35  Aligned_cols=117  Identities=15%  Similarity=0.125  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEE-EEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEI-SLGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I-~L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      +.++++.|++.++-|-+     |.     -.+.+.+..+++.+.+.+...| .+.-. ..++-...+..+++.+.+..+.
T Consensus         4 ~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~   73 (347)
T TIGR01521         4 MRQLLDHAAEFGYGVPA-----FN-----VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH   73 (347)
T ss_pred             HHHHHHHHHHcCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence            45677899999987752     31     2367889999999999987644 44332 2333346678888888887764


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeeccc-------CCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVA-------GLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~-------GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +|+.+|.  |-|.-......|+++|.+  ++|+|-.       .+-+         | .-|-+++.+.+.
T Consensus        74 VPValHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~  132 (347)
T TIGR01521        74 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDY---------NVRVTAEVVAFAHA  132 (347)
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            5777655  777788999999999998  7799976       5554         4 445667777663

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.35  E-value=5.3  Score=42.87  Aligned_cols=145  Identities=12%  Similarity=0.084  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ..+.+..++-++.|.+.|++.|-+...   .....   ..+..++++.+....+. ++....+...              
T Consensus       182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~---~~~l~~Ll~~l~~~~~~~~ir~~~~~p~--------------  244 (449)
T PRK14332        182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQ---STDFAGLIQMLLDETTIERIRFTSPHPK--------------  244 (449)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCC---cccHHHHHHHHhcCCCcceEEEECCCcc--------------
Confidence            468899999999999999998877532   21110   11233444444332221 1111111111              


Q ss_pred             hhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949          220 SVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC  294 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~  294 (452)
                      .       ...+-++...++|  ...+++.+ +.||.-++. .|+.  ...+.+.++++.+|+.  ++.+.++++  +|.
T Consensus       245 ~-------~~~ell~~m~~~~~~~~~l~lgvQSgsd~vLk~-m~R~--~t~~~~~~~i~~lr~~~p~i~i~td~I--vGf  312 (449)
T PRK14332        245 D-------FPDHLLSLMAKNPRFCPNIHLPLQAGNTRVLEE-MKRS--YSKEEFLDVVKEIRNIVPDVGITTDII--VGF  312 (449)
T ss_pred             c-------CCHHHHHHHHhCCCccceEEECCCcCCHHHHHh-hCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--eeC
Confidence            0       1123456666777  67888876 556544433 3332  2334555677888876  566666555  677


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEE
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEI  320 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I  320 (452)
                      |.++   .+.+.+.++.+.+.+.+.+
T Consensus       313 PgET---~edf~~tl~~v~~l~~~~~  335 (449)
T PRK14332        313 PNET---EEEFEDTLAVVREVQFDMA  335 (449)
T ss_pred             CCCC---HHHHHHHHHHHHhCCCCEE
Confidence            8775   5777777888888887765

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=92.29  E-value=4  Score=43.06  Aligned_cols=102  Identities=8%  Similarity=0.048  Sum_probs=65.2

Q ss_pred             HHHHH-hC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc----CC-----cC---CCcHHHHHHHHH
Q 012949          274 AHAAK-VL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----DT-----IG---VGTPGTVVPMLE  339 (452)
Q Consensus       274 v~~Ak-~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~----DT-----~G---~~~P~~v~~li~  339 (452)
                      ++.+| +. ...+.+.|+        +..+++.+.++++.+.++|+|.|.|-    .+     .|   .-.|+.++++++
T Consensus       104 i~~~k~~~~~~pvIaSi~--------~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~  175 (385)
T PLN02495        104 FKQLKEEYPDRILIASIM--------EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCG  175 (385)
T ss_pred             HHHHHhhCCCCcEEEEcc--------CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHH
Confidence            34444 44 346665553        22467999999999999999966652    11     11   147999999999


Q ss_pred             HHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE---eecccCCC
Q 012949          340 AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV---DCSVAGLG  384 (452)
Q Consensus       340 ~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V---D~Sv~GlG  384 (452)
                      .+++... +||-+-.--+..-=..-+.+|.++||+.|   ++...+++
T Consensus       176 ~Vk~~~~-iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~  222 (385)
T PLN02495        176 WINAKAT-VPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMG  222 (385)
T ss_pred             HHHHhhc-CceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccc
Confidence            9988653 46666665554433344555778999855   55544443

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=92.27  E-value=4.8  Score=41.02  Aligned_cols=119  Identities=14%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.+++.|++.|.+.... +                  .+.++..|+.|+.|...+.           +.    +.++.
T Consensus        79 ~~~~~~~~~v~~v~~~~g~-p------------------~~~i~~lk~~g~~v~~~v~-----------s~----~~a~~  124 (307)
T TIGR03151        79 LVDLVIEEKVPVVTTGAGN-P------------------GKYIPRLKENGVKVIPVVA-----------SV----ALAKR  124 (307)
T ss_pred             HHHHHHhCCCCEEEEcCCC-c------------------HHHHHHHHHcCCEEEEEcC-----------CH----HHHHH
Confidence            5677889999988764321 1                  1466788888987753221           12    35677


Q ss_pred             HHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCCCC
Q 012949          312 LHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGGCP  387 (452)
Q Consensus       312 l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGecP  387 (452)
                      +.++|+|.|.+-  +.-|...+.....+++.+++.++ +||-.-..=..+-.   ..+|+..||+.|  -+.+..--||+
T Consensus       125 a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~t~Es~  200 (307)
T TIGR03151       125 MEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLCAKECN  200 (307)
T ss_pred             HHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEECCCCCHHH---HHHHHHcCCCEeecchHHhcccccC
Confidence            888999998872  22333222234678888888764 35555443332222   456667899854  55555556644


Q ss_pred             C
Q 012949          388 Y  388 (452)
Q Consensus       388 ~  388 (452)
                      .
T Consensus       201 ~  201 (307)
T TIGR03151       201 V  201 (307)
T ss_pred             C
Confidence            3

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=92.23  E-value=1.7  Score=43.90  Aligned_cols=117  Identities=16%  Similarity=0.148  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+... ..+..-+.+..++..+.++.+
T Consensus         5 ~~k~iL~~A~~~~yaV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~   74 (284)
T PRK12857          5 TVAELLKKAEKGGYAVGA-----FN-----CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS   74 (284)
T ss_pred             cHHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence            356777899999987642     21     13568888899999988866 5555543 223334556777887777775


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      . |+.+|.  |-|.-......|+++|.+  ++|+|-..+-+         | .-|.+++.+.+.
T Consensus        75 V-PValHL--DH~~~~e~i~~ai~~GftSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~  126 (284)
T PRK12857         75 V-PVALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE---------NIALTKKVVEIAHA  126 (284)
T ss_pred             C-CEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            3 666654  677778899999999998  77999886655         4 445666666653

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]

Probab=92.23  E-value=7.5  Score=38.92  Aligned_cols=144  Identities=21%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             CCCHHHHHHHHHHHHHCC-CCEEEEecCCCCCcccccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSG-LPVVEATSFVSPKWVPQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~G-v~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .+++++..++...+.+.| +..+-++..     -|-+. |..++.+.++...+..+. +..|.. +              
T Consensus        47 el~~~~~~~~~~~~~~~g~~~~v~~~gG-----EPll~~d~~ei~~~~~~~~~~~~~-~~TnG~-~--------------  105 (347)
T COG0535          47 ELSTEEDLRVIDELAELGEIPVVIFTGG-----EPLLRPDLLEIVEYARKKGGIRVS-LSTNGT-L--------------  105 (347)
T ss_pred             ccCHHHHHHHHHHHHHcCCeeEEEEeCC-----CccccccHHHHHHHHhhcCCeEEE-EeCCCc-c--------------
Confidence            467888888999999999 666666432     13332 445555555543344433 223211 0              


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                            ...+.++...++|++.|.|.+-..+... +-.-...+-+++++.+.++.+++.|+.+..++..       ++.+
T Consensus       106 ------~~~~~~~~l~~~g~~~v~iSid~~~~e~-hd~~rg~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n  171 (347)
T COG0535         106 ------LTEEVLEKLKEAGLDYVSISLDGLDPET-HDPIRGVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKIN  171 (347)
T ss_pred             ------CCHHHHHHHHhcCCcEEEEEecCCChhh-hhhhcCCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCc
Confidence                  0123667778899999999875433211 0111222356777888899999999875433332       3456


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE
Q 012949          302 PSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      .+.+.++++.+.+.|++.+.+
T Consensus       172 ~~~l~~~~~~~~~~g~~~~~~  192 (347)
T COG0535         172 YDELPEIADLAAELGVDELNV  192 (347)
T ss_pred             HHHHHHHHHHHHHcCCCEEEE
Confidence            788889999999999875554

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=92.22  E-value=2.2  Score=43.03  Aligned_cols=102  Identities=16%  Similarity=0.167  Sum_probs=72.4

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCCCc
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE  348 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~  348 (452)
                      .++++.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.. +......+.+..++..+.+... +
T Consensus         2 k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V   70 (276)
T cd00947           2 KELLKKAREGGYAVGA-----FN-----INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V   70 (276)
T ss_pred             HHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence            4567889999987752     21     23568888888888888876 444443 3333445678888888877775 3


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  385 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  385 (452)
                      |+.+|.  |.|.-......|+++|.+  ++|+|-..+-+
T Consensus        71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~ee  107 (276)
T cd00947          71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFEE  107 (276)
T ss_pred             CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence            666665  666778889999999998  77988776544

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=92.22  E-value=4  Score=41.27  Aligned_cols=123  Identities=19%  Similarity=0.117  Sum_probs=77.1

Q ss_pred             HhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +..+-|-++|+--|...-. .+|+..  .=|..|-...+.++++-+.   -.++|.+-+-            ..+ ..-+
T Consensus        21 eqa~iae~aga~avm~le~~p~d~r~--~ggv~R~~~p~~I~~I~~~---V~iPVig~~k------------igh-~~Ea   82 (287)
T TIGR00343        21 EQAKIAEEAGAVAVMALERVPADIRA--SGGVARMSDPKMIKEIMDA---VSIPVMAKVR------------IGH-FVEA   82 (287)
T ss_pred             HHHHHHHHcCceEEEeeccCchhhHh--cCCeeecCCHHHHHHHHHh---CCCCEEEEee------------ccH-HHHH
Confidence            4556677888776665432 234322  2222333333333222221   2566653221            122 4567


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +.+.++|+|.|   |-+-.++|  ..+++...|..| ..+|-.-+-|     +..++.++..|+++|-++..|
T Consensus        83 ~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~  144 (287)
T TIGR00343        83 QILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA  144 (287)
T ss_pred             HHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence            78899999999   88999999  688899999988 4445443332     567889999999999999885

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.19  E-value=5  Score=42.85  Aligned_cols=149  Identities=11%  Similarity=0.051  Sum_probs=86.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC-CCC--CcccccCCHHHHHHHHHhcc--CCceeEEecchhhhhhhhhhhhhcc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF-VSP--KWVPQLADARDVMEAVRDLE--GARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~-~s~--~~~p~~~D~e~v~~~i~~~~--~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      ..+.++.++-++.|.+.|++.|-+... ...  ...|...+..++++.+..+.  ..++...-|..              
T Consensus       166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~--------------  231 (440)
T PRK14334        166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMN--------------  231 (440)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCccc--------------
Confidence            457888898899999999998876421 100  00111224566677665431  11221111110              


Q ss_pred             chhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          219 ASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                               ...+-++...+.  |...+++.+ +.|+.-++. .|+.  ...+.+.++++.+|+.|..+.....+.+|.|
T Consensus       232 ---------i~~ell~~l~~~~~g~~~l~igvQSgs~~vLk~-m~R~--~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~P  299 (440)
T PRK14334        232 ---------FTDDVIAAMAETPAVCEYIHLPVQSGSDRVLRR-MARE--YRREKYLERIAEIREALPDVVLSTDIIVGFP  299 (440)
T ss_pred             ---------CCHHHHHHHHhcCcCCCeEEeccccCCHHHHHH-hCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEEECC
Confidence                     122455666664  478888876 555544332 2322  2234455677888888766544444457778


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      .++   .+.+.+.++.+.+.+.+.+.
T Consensus       300 gEt---~ed~~~tl~~i~~l~~~~i~  322 (440)
T PRK14334        300 GET---EEDFQETLSLYDEVGYDSAY  322 (440)
T ss_pred             CCC---HHHHHHHHHHHHhcCCCEee
Confidence            764   67777788888888887654

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=92.17  E-value=7.2  Score=40.29  Aligned_cols=138  Identities=17%  Similarity=0.166  Sum_probs=84.5

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCC-
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPV-  296 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~-  296 (452)
                      +..++|.++|.|.|.|-..        .|+..++  ..+|-|.++=++.+.++++.+|+. |.+  |..-|+.    .+ 
T Consensus       145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~----~~~  220 (343)
T cd04734         145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISG----DED  220 (343)
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeeh----hhc
Confidence            3556777899999988653        2554444  347788888888888999988885 544  3322331    11 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCC-cCEEEEcCC-c----------CC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          297 -EGAIPPSKVAYVAKELHDMG-CFEISLGDT-I----------GV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT-~----------G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                       .+-.+++...++++.+.++| +|.|.+.-- .          ..  ..+....++++.+++.+.. +|..-.  +.- -
T Consensus       221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i-pvi~~G--~i~-~  296 (343)
T cd04734         221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL-PVFHAG--RIR-D  296 (343)
T ss_pred             cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC-CEEeeC--CCC-C
Confidence             11246788889999999998 899988311 0          00  0111234667777777643 444432  211 1


Q ss_pred             HHHHHHHHHcC-CCEE
Q 012949          362 LPNILISLQMG-ISTV  376 (452)
Q Consensus       362 ~ANaLaAl~aG-a~~V  376 (452)
                      ..-+..+++.| +|.|
T Consensus       297 ~~~~~~~l~~~~~D~V  312 (343)
T cd04734         297 PAEAEQALAAGHADMV  312 (343)
T ss_pred             HHHHHHHHHcCCCCee
Confidence            35566777766 6654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=92.16  E-value=3.9  Score=39.63  Aligned_cols=156  Identities=27%  Similarity=0.334  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      -+.++-+.+++.|.+.|++.||+++-+ |       ++.+.++.+++ .+++-+.+-+                      
T Consensus        22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGT----------------------   71 (211)
T COG0800          22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGT----------------------   71 (211)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEcccc----------------------
Confidence            578999999999999999999999743 2       34556666653 3432222111                      


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                         ....++++.|+++|.+.+-  .+--+                  .+++++|++.|+.+.         |  +-.+|.
T Consensus        72 ---VL~~~q~~~a~~aGa~fiV--sP~~~------------------~ev~~~a~~~~ip~~---------P--G~~Tpt  117 (211)
T COG0800          72 ---VLNPEQARQAIAAGAQFIV--SPGLN------------------PEVAKAANRYGIPYI---------P--GVATPT  117 (211)
T ss_pred             ---ccCHHHHHHHHHcCCCEEE--CCCCC------------------HHHHHHHHhCCCccc---------C--CCCCHH
Confidence               0124589999999998653  11111                  367899999999864         1  223444


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ++.    .+.++|++.+-+==-....-    ..+++.+.--+|+    +-+=-+-|-...|.-.-+.+|+..|
T Consensus       118 Ei~----~Ale~G~~~lK~FPa~~~Gg----~~~~ka~~gP~~~----v~~~pTGGVs~~N~~~yla~gv~av  178 (211)
T COG0800         118 EIM----AALELGASALKFFPAEVVGG----PAMLKALAGPFPQ----VRFCPTGGVSLDNAADYLAAGVVAV  178 (211)
T ss_pred             HHH----HHHHcChhheeecCccccCc----HHHHHHHcCCCCC----CeEeecCCCCHHHHHHHHhCCceEE
Confidence            433    45778998777722111111    2345555544454    3444577888889999999995533

>TIGR00089 RNA modification enzyme, MiaB family

Probab=92.09  E-value=7.7  Score=41.11  Aligned_cols=148  Identities=15%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEe---cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLT---PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~---~~~~~~i~r~~~~~~~  217 (452)
                      ..+.+..++-++.|.+.|++.|-+...   .............++++.+..+.+.....+.   |..             
T Consensus       167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~-------------  233 (429)
T TIGR00089       167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDD-------------  233 (429)
T ss_pred             CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhh-------------
Confidence            478899999999999999998877531   1111000011345566666554333211111   110             


Q ss_pred             cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--IPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~~V~~~l~~~~  292 (452)
                                ...+-++...++|  ...+.+.+ +.|+.-++. .|+.  ...+.+.++++.+++.|  +.+.++++  +
T Consensus       234 ----------i~~ell~~m~~~~~~~~~l~igiES~s~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--v  298 (429)
T TIGR00089       234 ----------VTDDLIELIAENPKVCKHLHLPVQSGSDRILKR-MNRK--YTREEYLDIVEKIRAKIPDAAITTDII--V  298 (429)
T ss_pred             ----------cCHHHHHHHHhCCCccCceeeccccCChHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--E
Confidence                      1123556666664  77787754 666654443 4443  34456667888888888  66665555  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+.+
T Consensus       299 G~PgET---~ed~~~tl~~i~~~~~~~~~~  325 (429)
T TIGR00089       299 GFPGET---EEDFEETLDLVEEVKFDKLHS  325 (429)
T ss_pred             ECCCCC---HHHHHHHHHHHHhcCCCEeec
Confidence            778774   677778888888888877664

This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=91.98  E-value=4.7  Score=36.32  Aligned_cols=86  Identities=16%  Similarity=0.180  Sum_probs=45.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -+++|.+.+++.|.+..-...             .+..+.++++..++.|+.-.. +.  +|.-.  -.+++......++
T Consensus        44 ~v~aa~~~~adiVglS~l~~~-------------~~~~~~~~~~~l~~~gl~~~~-vi--vGG~~--vi~~~d~~~~~~~  105 (134)
T TIGR01501        44 FIKAAIETKADAILVSSLYGH-------------GEIDCKGLRQKCDEAGLEGIL-LY--VGGNL--VVGKQDFPDVEKR  105 (134)
T ss_pred             HHHHHHHcCCCEEEEeccccc-------------CHHHHHHHHHHHHHCCCCCCE-EE--ecCCc--CcChhhhHHHHHH
Confidence            345556666676666532211             234455666777777763211 11  22100  1234555555566


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHH
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLE  339 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~  339 (452)
                      +.++|++.+.=+.|    .|+++.+.++
T Consensus       106 l~~~Gv~~vF~pgt----~~~~iv~~l~  129 (134)
T TIGR01501       106 FKEMGFDRVFAPGT----PPEVVIADLK  129 (134)
T ss_pred             HHHcCCCEEECcCC----CHHHHHHHHH
Confidence            77788888777666    5555555444

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>PRK15108 biotin synthase; Provisional

Probab=91.97  E-value=1.7  Score=45.08  Aligned_cols=114  Identities=17%  Similarity=0.123  Sum_probs=71.9

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH-
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA-  340 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~-  340 (452)
                      +.+++++    .++.+++.|+.-. .+.  .+.......+.+++.++++.+.+.|+.   ++-|.|.++++.+.+|.++ 
T Consensus        77 s~eEI~~----~a~~~~~~G~~~i-~i~--~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeAG  146 (345)
T PRK15108         77 EVEQVLE----SARKAKAAGSTRF-CMG--AAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANAG  146 (345)
T ss_pred             CHHHHHH----HHHHHHHcCCCEE-EEE--ecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHcC
Confidence            4455554    4466777887632 222  111111223568899999998887753   3468999997777776544 


Q ss_pred             HHH------hCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          341 VMA------VVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       341 l~~------~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      +..      ..|..-=.+|.+.++.--+.....|.++|...--+-+.|+||
T Consensus       147 ld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE  197 (345)
T PRK15108        147 LDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE  197 (345)
T ss_pred             CCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence            220      011100125666677778888889999999766677999999

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional

Probab=91.97  E-value=8.6  Score=40.30  Aligned_cols=134  Identities=14%  Similarity=0.149  Sum_probs=85.8

Q ss_pred             HHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949          237 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  312 (452)
Q Consensus       237 ~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~----G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l  312 (452)
                      ...|.|.+..++-..+.      ..+++++-+.+.+..+++++.    .-.-....  .|| +..+-.+++.-.+-++.+
T Consensus       134 ~~ig~DI~~~LD~~~~~------~~~~~~~~~sv~rT~rw~~~~~~~~~~~~~~~~--lfg-iVQGg~~~dLR~~sa~~l  204 (366)
T PRK00112        134 YDLGSDIVMAFDECPPY------PATYDYAKKSMERTLRWAERSRDAHDRLENDQA--LFG-IVQGGVYEDLRRESAKGL  204 (366)
T ss_pred             HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCcce--EEE-EeeCCccHHHHHHHHHHH
Confidence            35788988877643332      234444545555444444332    00000001  121 344556667667788899


Q ss_pred             HHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccCC
Q 012949          313 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       313 ~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      .+.+.+.+.|.--...-...++.++|+.++..+|.. --.|.   +|.+. .+.+.++..|+|.+|.+..=.
T Consensus       205 ~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~p~r  272 (366)
T PRK00112        205 VEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPED-KPRYL---MGVGTPEDLVEGVARGVDMFDCVMPTR  272 (366)
T ss_pred             HhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCc-CCeEe---cCCCCHHHHHHHHHcCCCEEeeCCccc
Confidence            999999999988544457888999999999998763 22444   55554 689999999999999887543

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=91.94  E-value=4.6  Score=36.14  Aligned_cols=83  Identities=14%  Similarity=0.202  Sum_probs=46.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .+++|.+.+++.|.+..-...             .+..+.++++..++.|+ .+-  +.  .|...  ..+++...+..+
T Consensus        42 ~v~aa~~~~adiVglS~L~t~-------------~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~  102 (128)
T cd02072          42 FIDAAIETDADAILVSSLYGH-------------GEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEK  102 (128)
T ss_pred             HHHHHHHcCCCEEEEeccccC-------------CHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHH
Confidence            445666667777776542221             23455566677777776 322  11  22110  124456666667


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPM  337 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~l  337 (452)
                      ++.++|++.+.=++|    .|.++.+-
T Consensus       103 ~L~~~Gv~~vf~pgt----~~~~i~~~  125 (128)
T cd02072         103 RFKEMGFDRVFAPGT----PPEEAIAD  125 (128)
T ss_pred             HHHHcCCCEEECcCC----CHHHHHHH
Confidence            778888888887776    55555443

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=91.91  E-value=1.6  Score=45.38  Aligned_cols=102  Identities=12%  Similarity=0.086  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+... ..++-...+..++..+.+..+
T Consensus         5 ~~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~   74 (347)
T PRK13399          5 TLRQLLDHAAENGYGVPA-----FN-----VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP   74 (347)
T ss_pred             cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence            456778999999987752     21     24678888999999998876 4444332 333445668888888888776


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccC
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAG  382 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~G  382 (452)
                      .+|+.+|.  |-|.-......|+++|.+  ++|+|-..
T Consensus        75 ~VPVaLHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~  110 (347)
T PRK13399         75 DIPICLHQ--DHGNSPATCQSAIRSGFTSVMMDGSLLA  110 (347)
T ss_pred             CCcEEEEC--CCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence            45677654  677778889999999998  77999874

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=91.87  E-value=3  Score=43.70  Aligned_cols=89  Identities=11%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-------CCCcHHHHHHHHHH
Q 012949          268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------GVGTPGTVVPMLEA  340 (452)
Q Consensus       268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------G~~~P~~v~~li~~  340 (452)
                      +.+.++++.+|+.++.|-  +          |.++....++++.+.++|++.|.+-.|+       |...|..+.++++.
T Consensus       119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~  186 (369)
T TIGR01304       119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE  186 (369)
T ss_pred             HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence            455667777777763322  1          2345677889999999999999986553       55678766666554


Q ss_pred             HHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          341 VMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       341 l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                          ++ ++|- +  .+ -.....++.++++||+.|.
T Consensus       187 ----~~-IPVI-~--G~-V~t~e~A~~~~~aGaDgV~  214 (369)
T TIGR01304       187 ----LD-VPVI-A--GG-VNDYTTALHLMRTGAAGVI  214 (369)
T ss_pred             ----CC-CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence                33 3443 3  22 3445677888899999988

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=91.78  E-value=6.7  Score=41.73  Aligned_cols=87  Identities=9%  Similarity=0.001  Sum_probs=61.7

Q ss_pred             HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV-RGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V-~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.|-+. .++-. ...+|+.  ...+.+.++++.+++.|+++ .+.++  +|.|..   +.+.+.+
T Consensus       141 ~e~l~~l~~~G~~rvslGvQS~~~~~-L~~l~R~--~~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~  212 (430)
T PRK08208        141 AEKLALLAARGVNRLSIGVQSFHDSE-LHALHRP--QKRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWME  212 (430)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHH-HHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHH
Confidence            45788888999999998774 44432 3334443  24456667889999999974 45555  666765   4688888


Q ss_pred             HHHHHHHCCcCEEEEcC
Q 012949          308 VAKELHDMGCFEISLGD  324 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~D  324 (452)
                      .++.+.+.|++.|.+-.
T Consensus       213 ~l~~~~~l~~~~is~y~  229 (430)
T PRK08208        213 SLDQALVYRPEELFLYP  229 (430)
T ss_pred             HHHHHHhCCCCEEEEcc
Confidence            88999999998777654

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.76  E-value=3.5  Score=45.02  Aligned_cols=173  Identities=17%  Similarity=0.159  Sum_probs=91.4

Q ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          142 KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       142 ~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.....++-.+.++.|.++|++.|++.  .++.+-   ...-+.++.++...+-.+.+.+=|.                 
T Consensus       235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd--~a~g~~---~~~~~~i~~ir~~~~~~~~V~aGnV-----------------  292 (502)
T PRK07107        235 GAGINTRDYAERVPALVEAGADVLCID--SSEGYS---EWQKRTLDWIREKYGDSVKVGAGNV-----------------  292 (502)
T ss_pred             eeccChhhHHHHHHHHHHhCCCeEeec--Cccccc---HHHHHHHHHHHHhCCCCceEEeccc-----------------
Confidence            344566667889999999999999997  322200   0012233444432221222222222                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhh-hc--CCCHHHHHHHHHHHH-HHHHhCCCcEEEEEEeeecCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKS-NI--NCSIEDSLVRYRAVA-HAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~--~~s~e~~l~~~~~~v-~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                            .+.++++.++++|+|.|.+....--+-... ++  +...-.++..+.+++ +++++.|..+.  |..     |.
T Consensus       293 ------~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dg  359 (502)
T PRK07107        293 ------VDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DG  359 (502)
T ss_pred             ------cCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cC
Confidence                  134688999999999998865433111111 22  333444555555544 35666784332  221     33


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNIL  366 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaL  366 (452)
                      +--   +-..+++++. +|||.+.+.-.            ++.- .+.|+..+   +-++-.-+|||...++
T Consensus       360 Gir---~~gdi~KAla-~GA~~vm~G~~------------~ag~-~espg~~~~~~g~~~k~yrgm~s~~a~  414 (502)
T PRK07107        360 GIV---YDYHMTLALA-MGADFIMLGRY------------FARF-DESPTNKVNINGNYMKEYWGEGSNRAR  414 (502)
T ss_pred             CCC---chhHHHHHHH-cCCCeeeeChh------------hhcc-ccCCCcEEEECCEEEEEeecccCHhhh
Confidence            421   2234555443 89999987542            2222 34565322   2244456899876655

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=91.76  E-value=2.2  Score=46.47  Aligned_cols=70  Identities=10%  Similarity=0.046  Sum_probs=53.8

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+.++.+.++|++.|.+ |+.-..++. +.++|+.+++.+|+.+|..    -...-...+..++++|||.|.+++.
T Consensus       243 ~~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g  312 (495)
T PTZ00314        243 IERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG  312 (495)
T ss_pred             HHHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence            67888999999999998 665433444 4778999999998777766    2233346888999999999988654

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=91.74  E-value=21  Score=39.32  Aligned_cols=111  Identities=11%  Similarity=0.094  Sum_probs=74.8

Q ss_pred             cHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      ..+.++...+.|+.+|.+-+ +.+|--+ ..+|+.  ...+.+.++++.+|+.|+.|.+.++  +|.|..   +++...+
T Consensus       205 ~~e~L~~L~~~G~~rVslGVQS~~d~VL-~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~  276 (522)
T TIGR01211       205 REEHIDRMLKLGATRVELGVQTIYNDIL-ERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLE  276 (522)
T ss_pred             CHHHHHHHHHcCCCEEEEECccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHH
Confidence            45688999999999988876 4444322 223321  2234445677999999998877776  677765   3566666


Q ss_pred             HHHHHHH---CCcCEEEEcCCc-------------C---CCcHHHHHHHHHHHHHhCCC
Q 012949          308 VAKELHD---MGCFEISLGDTI-------------G---VGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       308 ~a~~l~~---~Gad~I~L~DT~-------------G---~~~P~~v~~li~~l~~~~p~  347 (452)
                      .++.+.+   .++|.|.+=-+.             |   ..++++..+++..+.+.+|.
T Consensus       277 t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp~  335 (522)
T TIGR01211       277 MFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMPK  335 (522)
T ss_pred             HHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCc
Confidence            7777664   788988775522             2   24557777888888888873

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=91.65  E-value=15  Score=36.46  Aligned_cols=187  Identities=14%  Similarity=0.124  Sum_probs=108.6

Q ss_pred             HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949          154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG  232 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~  232 (452)
                      +....+.|.++||+=+--+. ..-|.    ..+++.+++..++.+-+|++.+..    -+.|...--++|       .++
T Consensus        14 a~~A~~~GAdRiELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~g----dF~Ys~~E~~~M-------~~d   78 (248)
T PRK11572         14 ALTAQQAGADRIELCAAPKEGGLTPS----LGVLKSVRERVTIPVHPIIRPRGG----DFCYSDGEFAAM-------LED   78 (248)
T ss_pred             HHHHHHcCCCEEEEccCcCCCCcCCC----HHHHHHHHHhcCCCeEEEEecCCC----CCCCCHHHHHHH-------HHH
Confidence            44567889999999532111 11122    234555554446666777755431    234444433333       459


Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  312 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l  312 (452)
                      ++.+.+.|++.|.+-+-..|-..      +    .+.+.++++.|+  ++++.  +=.+|   |..+ |   ..+..+.+
T Consensus        79 i~~~~~~GadGvV~G~L~~dg~v------D----~~~~~~Li~~a~--~~~vT--FHRAf---D~~~-d---~~~al~~l  137 (248)
T PRK11572         79 IATVRELGFPGLVTGVLDVDGHV------D----MPRMRKIMAAAG--PLAVT--FHRAF---DMCA-N---PLNALKQL  137 (248)
T ss_pred             HHHHHHcCCCEEEEeeECCCCCc------C----HHHHHHHHHHhc--CCceE--Eechh---hccC-C---HHHHHHHH
Confidence            99999999998887654333211      1    345566777774  55554  22334   2221 2   23567888


Q ss_pred             HHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          313 HDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       313 ~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .++|+++|-=  +-|..+..+-.+.++.+.+..+...|-    ---|.-..|.-.-++.|++.||.|-..
T Consensus       138 ~~lG~~rILT--SGg~~~a~~g~~~L~~lv~~a~~~~Im----~GgGV~~~Nv~~l~~tG~~~~H~s~~~  201 (248)
T PRK11572        138 ADLGVARILT--SGQQQDAEQGLSLIMELIAASDGPIIM----AGAGVRLSNLHKFLDAGVREVHSSAGQ  201 (248)
T ss_pred             HHcCCCEEEC--CCCCCCHHHHHHHHHHHHHhcCCCEEE----eCCCCCHHHHHHHHHcCCCEEeeCCCc
Confidence            8999998863  233344566667777777766542111    123555666655568999999988653

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=91.61  E-value=2.7  Score=42.35  Aligned_cols=122  Identities=17%  Similarity=0.061  Sum_probs=77.6

Q ss_pred             HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +..+-|-++|+--|.+...+ +|..  ..-|.-|-+..+.+    +..|+ -.++|.+-+            -..+ ..-
T Consensus        19 ~qa~~ae~aga~~v~~~~~~~~~~~--~~~~v~R~~~~~~I----~~Ik~~V~iPVIGi~------------K~~~-~~E   79 (283)
T cd04727          19 EQARIAEEAGAVAVMALERVPADIR--AAGGVARMADPKMI----KEIMDAVSIPVMAKV------------RIGH-FVE   79 (283)
T ss_pred             HHHHHHHHcCceEEeeeccCchhhh--hcCCeeecCCHHHH----HHHHHhCCCCeEEee------------ehhH-HHH
Confidence            35556678888777765322 4442  22233333334333    22222 256664311            1223 567


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      ++.+.++|+|.|   |-+...+|  ..+++..+|..+ +.+|-.-+-     -+..++.|+++|+++|-+|+.|
T Consensus        80 a~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-----tleEal~a~~~Gad~I~TTl~g  142 (283)
T cd04727          80 AQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-----NLGEALRRISEGAAMIRTKGEA  142 (283)
T ss_pred             HHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-----CHHHHHHHHHCCCCEEEecCCC
Confidence            788999999999   87788888  688999999988 433332222     2578899999999999999985

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=91.57  E-value=9.8  Score=41.02  Aligned_cols=123  Identities=17%  Similarity=0.224  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHH-----HHCC----CCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhh
Q 012949          145 VPTGVKVELIRRL-----VSSG----LPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       145 ~~~~~k~~i~~~L-----~~~G----v~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ++.+...+.++.+     .+.|    .|.|.+++...        |++.+...++.+   .+..++.-+.+         
T Consensus       102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~d---------  164 (450)
T PRK04165        102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSED---------  164 (450)
T ss_pred             CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCC---------
Confidence            5666666666666     5666    99999997432        444455555543   24444433332         


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                                       .+.+++|+++|.+...+..+++.               +++.++++.|++.|..+.+  +   
T Consensus       165 -----------------pevleaAleagad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~---  207 (450)
T PRK04165        165 -----------------PAVLKAALEVVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K---  207 (450)
T ss_pred             -----------------HHHHHHHHHhcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E---
Confidence                             24788999999998888777653               4555677888898987752  2   


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV  328 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~  328 (452)
                       .+     +.+.+.++.+.+.++|...|.| |....
T Consensus       208 -~~-----dl~~L~~lv~~~~~~GI~dIIL-DPg~g  236 (450)
T PRK04165        208 -AP-----NLEELKELVEKLQAAGIKDLVL-DPGTE  236 (450)
T ss_pred             -ch-----hHHHHHHHHHHHHHcCCCcEEE-CCCCc
Confidence             11     2688889999999999988888 66443

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=91.51  E-value=4.1  Score=40.81  Aligned_cols=131  Identities=18%  Similarity=0.144  Sum_probs=75.1

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++.+.++|+|.|.+-++. +....  .+...-...+.+.++++.+|+. +++|.+-+.     |     +.+...++++
T Consensus       107 ~a~~~~~~G~d~iElN~~c-P~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~~a~  173 (296)
T cd04740         107 VAEKLADAGADAIELNISC-PNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVEIAR  173 (296)
T ss_pred             HHHHHHHcCCCEEEEECCC-CCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHHHHH
Confidence            5566677899988775442 21111  0111112235556677777776 777664332     1     2346778899


Q ss_pred             HHHHCCcCEEEEcCCcCCC------------------cH----HHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIGVG------------------TP----GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILI  367 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~------------------~P----~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLa  367 (452)
                      .+.++|+|.|.+-+|.+..                  .+    ....++++.+++.++ ++|-.    .-|. -...+..
T Consensus       174 ~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~----~GGI~~~~da~~  248 (296)
T cd04740         174 AAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIG----VGGIASGEDALE  248 (296)
T ss_pred             HHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHH
Confidence            9999999999886654321                  11    113456777777653 23322    2232 2367778


Q ss_pred             HHHcCCCEEeecc
Q 012949          368 SLQMGISTVDCSV  380 (452)
Q Consensus       368 Al~aGa~~VD~Sv  380 (452)
                      ++++||+.|..+=
T Consensus       249 ~l~~GAd~V~igr  261 (296)
T cd04740         249 FLMAGASAVQVGT  261 (296)
T ss_pred             HHHcCCCEEEEch
Confidence            8888888776543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=91.43  E-value=16  Score=36.27  Aligned_cols=175  Identities=23%  Similarity=0.260  Sum_probs=99.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.+=+......  .+.+.  +..++++.+.+..+-++.+++    .+.+            
T Consensus        17 ~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE--~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~------------   82 (284)
T cd00950          17 SVDFDALERLIEFQIENGTDGLVVCGTTGE--SPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTA------------   82 (284)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--hhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHH------------
Confidence            589999999999999999999887533222  12232  223334433332222222222    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +        ..+-.+.|.++|++.|.+..+..       +..+.++.++-++++++.   .++++..|-     .|. 
T Consensus        83 --~--------~~~~a~~a~~~G~d~v~~~~P~~-------~~~~~~~l~~~~~~ia~~---~~~pi~lYn-----~P~~  137 (284)
T cd00950          83 --E--------AIELTKRAEKAGADAALVVTPYY-------NKPSQEGLYAHFKAIAEA---TDLPVILYN-----VPGR  137 (284)
T ss_pred             --H--------HHHHHHHHHHcCCCEEEEccccc-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----ChhH
Confidence              1        12356778889999998876532       234566667666555553   477776432     243 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                       ....+++.+.++++    . ...+.++|+.|  .+..+.+++    +..+. ++.+-.=+| +    ..+.++..|++
T Consensus       138 ~g~~ls~~~~~~L~~----~-p~v~giK~s~~--~~~~~~~~~----~~~~~-~~~v~~G~d-~----~~~~~~~~G~~  199 (284)
T cd00950         138 TGVNIEPETVLRLAE----H-PNIVGIKEATG--DLDRVSELI----ALCPD-DFAVLSGDD-A----LTLPFLALGGV  199 (284)
T ss_pred             hCCCCCHHHHHHHhc----C-CCEEEEEECCC--CHHHHHHHH----HhCCC-CeEEEeCCh-H----hHHHHHHCCCC
Confidence             22456666666653    2 57999999977  344555443    33443 354443333 1    23446788977

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=91.41  E-value=1.4  Score=44.83  Aligned_cols=83  Identities=14%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeC-CCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLH-DTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~H-nd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .++.++-.++++..++...+ ++|-+|.- ++.--++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G  103 (309)
T cd00952          24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG  103 (309)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999   67888999999988887754 56777774 67888999999999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      |+.|=..-
T Consensus       104 ad~vlv~~  111 (309)
T cd00952         104 ADGTMLGR  111 (309)
T ss_pred             CCEEEECC
Confidence            99776653

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.41  E-value=5.9  Score=39.49  Aligned_cols=154  Identities=16%  Similarity=0.181  Sum_probs=89.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHh----------h-hcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSK----------S-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~----------~-~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~  297 (452)
                      +-++...+.|+|.|-+-+|-||....          + +-|.+.++.++    .++..|+.  ..++.  +|. +-.|.-
T Consensus        30 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~----~~~~~r~~~~~~p~v--lm~-Y~N~i~  102 (258)
T PRK13111         30 EIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE----LVREIREKDPTIPIV--LMT-YYNPIF  102 (258)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCEE--EEe-cccHHh
Confidence            35667778999999999998883211          1 12334444444    34555533  34432  332 212221


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                       .+   -+.++++.+.++|++.+-++|-    .+++..++++.+++. +...|-+- -.+.--.-...+++...|.=++ 
T Consensus       103 -~~---G~e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~lv-ap~t~~eri~~i~~~s~gfIY~-  171 (258)
T PRK13111        103 -QY---GVERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFLV-APTTTDERLKKIASHASGFVYY-  171 (258)
T ss_pred             -hc---CHHHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEEe-CCCCCHHHHHHHHHhCCCcEEE-
Confidence             11   2346788889999999999994    678888888888764 43234333 3333344556666666664333 


Q ss_pred             ecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          378 CSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +++.|..+     .+++. ..+++.+..++.
T Consensus       172 vs~~GvTG-----~~~~~~~~~~~~i~~vk~  197 (258)
T PRK13111        172 VSRAGVTG-----ARSADAADLAELVARLKA  197 (258)
T ss_pred             EeCCCCCC-----cccCCCccHHHHHHHHHh
Confidence            46676444     02222 567778888885

>PRK07094 biotin synthase; Provisional

Probab=91.41  E-value=4.5  Score=40.96  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=42.1

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEEee
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTVDC  378 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~VD~  378 (452)
                      +++.+.+.++.+.+.|+..|.|.+. ......+.+.++++.++++ ++  +.+|++.  |.-....+..+ ++|++.|..
T Consensus        71 s~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~--l~i~~~~--g~~~~e~l~~Lk~aG~~~v~~  145 (323)
T PRK07094         71 SPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LD--VAITLSL--GERSYEEYKAWKEAGADRYLL  145 (323)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CC--ceEEEec--CCCCHHHHHHHHHcCCCEEEe
Confidence            5667777777777777777777522 1233456677777777665 33  2333322  32223333333 467777665


Q ss_pred             cccC
Q 012949          379 SVAG  382 (452)
Q Consensus       379 Sv~G  382 (452)
                      ++-+
T Consensus       146 glEs  149 (323)
T PRK07094        146 RHET  149 (323)
T ss_pred             cccc
Confidence            5543

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=91.41  E-value=3  Score=42.12  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      +.++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.++. .|.+.-. ..++....+..++..+.++.. 
T Consensus         4 ~k~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-   72 (282)
T TIGR01858         4 TKYMLQDAQAGGYAVPA-----FN-----IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN-   72 (282)
T ss_pred             HHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence            45677899999987742     21     23678888899999998876 4444332 233445667888888888775 


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS  406 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~  406 (452)
                      +|+.+|.  |.|.-......|+++|.+  ++|+|-..+-+         | .-|-+++.+.+
T Consensus        73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah  123 (282)
T TIGR01858        73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQ---------NVKLVKEVVDFCH  123 (282)
T ss_pred             CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCHHH---------HHHHHHHHHHHHH
Confidence            4677655  667778899999999998  77998776554         3 34455555555

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=91.41  E-value=3.8  Score=40.66  Aligned_cols=174  Identities=18%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.+.|..+|-+.+-+..- +...     ...+.+++.++.. +.   .+.||..        -.+..++.++       
T Consensus        25 ~~~~ai~asg~~ivTvalrR~~~~-----~~~~~~~~~i~~~-~~---~~lpNTa--------G~~ta~eAv~-------   80 (250)
T PRK00208         25 VMQEAIEASGAEIVTVALRRVNLG-----QGGDNLLDLLPPL-GV---TLLPNTA--------GCRTAEEAVR-------   80 (250)
T ss_pred             HHHHHHHHhCCCeEEEEEEeecCC-----CCcchHHhhcccc-CC---EECCCCC--------CCCCHHHHHH-------
Confidence            4567888999999988742 1111     1124567766531 22   1345543        1112222222       


Q ss_pred             HhHHHHHH-cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          231 QGFEAAIA-AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~-~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       -.+.|.+ .+.++|.+-+-..+.           .-+.++.+.++.|+++   |+.|..|..      +    |+    
T Consensus        81 -~a~lare~~~~~~iKlEVi~d~~-----------~llpd~~~tv~aa~~L~~~Gf~vlpyc~------~----d~----  134 (250)
T PRK00208         81 -TARLAREALGTNWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFVVLPYCT------D----DP----  134 (250)
T ss_pred             -HHHHHHHHhCCCeEEEEEecCCC-----------CCCcCHHHHHHHHHHHHHCCCEEEEEeC------C----CH----
Confidence             2344444 367888887654442           1245566777888887   998864332      1    22    


Q ss_pred             HHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE--eeccc
Q 012949          307 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      ..++++.++|++.| .+  ..+|...+-.-.++++.+++.. .++|-+-.    |.. -.-+..|++.|++.|  .++|.
T Consensus       135 ~~ak~l~~~G~~~v-mPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVIvea----GI~tpeda~~AmelGAdgVlV~SAIt  208 (250)
T PRK00208        135 VLAKRLEEAGCAAV-MPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIVDA----GIGTPSDAAQAMELGADAVLLNTAIA  208 (250)
T ss_pred             HHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEEEeC----CCCCHHHHHHHHHcCCCEEEEChHhh
Confidence            47788888999988 44  6666555544466677777763 34443332    222 256778899999854  44444

>PRK07379 coproporphyrinogen III oxidase; Provisional

Probab=91.39  E-value=6  Score=41.69  Aligned_cols=86  Identities=12%  Similarity=-0.004  Sum_probs=61.0

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.+-+..-+-.....+|+.  ...+.+.++++.+++.|++ |.+.++  +|.|..   +.+.+.+-
T Consensus       115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~G~~~v~~dlI--~GlPgq---t~e~~~~t  187 (400)
T PRK07379        115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRS--HRVKDIFAAVDLIHQAGIENFSLDLI--SGLPHQ---TLEDWQAS  187 (400)
T ss_pred             HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            457888889999999998744333333344442  2334455677899999998 666666  666754   46888888


Q ss_pred             HHHHHHCCcCEEEE
Q 012949          309 AKELHDMGCFEISL  322 (452)
Q Consensus       309 a~~l~~~Gad~I~L  322 (452)
                      ++.+.+++++.|.+
T Consensus       188 l~~~~~l~p~~is~  201 (400)
T PRK07379        188 LEAAIALNPTHLSC  201 (400)
T ss_pred             HHHHHcCCCCEEEE
Confidence            89999999988865

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=91.37  E-value=7.1  Score=39.59  Aligned_cols=51  Identities=22%  Similarity=0.194  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      .+.+.++++.+++.|+.|.+.++  +|.|..   +.+.+.+.++.+.+++++.|.+
T Consensus       162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i  212 (302)
T TIGR01212       162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI  212 (302)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            34556777888889998877666  566665   3578888888888888887764

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=91.34  E-value=5.4  Score=34.61  Aligned_cols=135  Identities=19%  Similarity=0.164  Sum_probs=79.7

Q ss_pred             CCCCHHHHHHHHHHH-HHCCCCEEEEecCCCCCcccccC-CHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhcc
Q 012949          143 NTVPTGVKVELIRRL-VSSGLPVVEATSFVSPKWVPQLA-DARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L-~~~Gv~~IEvG~~~s~~~~p~~~-D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      ..++.++.++.++.+ .+.|+..+..+..-     |.+. +....+..+.+.  .+.++...+.+..             
T Consensus        26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~ge-----p~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~-------------   87 (166)
T PF04055_consen   26 REMSPEEILEEIKELKQDKGVKEIFFGGGE-----PTLHPDFIELLELLRKIKKRGIRISINTNGTL-------------   87 (166)
T ss_dssp             EECHHHHHHHHHHHHHHHTTHEEEEEESST-----GGGSCHHHHHHHHHHHCTCTTEEEEEEEESTT-------------
T ss_pred             ccCCHHHHHHHHHHHhHhcCCcEEEEeecC-----CCcchhHHHHHHHHHHhhccccceeeeccccc-------------
Confidence            358999999999999 69998888887431     2221 233444444443  3444444444332             


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                               ...+.++...+.|.+.|.+.+...+-. .....+  +....+.+.++++.+++.|+.....+.  ++.|..
T Consensus        88 ---------~~~~~l~~l~~~~~~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~  154 (166)
T PF04055_consen   88 ---------LDEELLDELKKLGVDRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE  154 (166)
T ss_dssp             ---------HCHHHHHHHHHTTCSEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT
T ss_pred             ---------hhHHHHHHHHhcCccEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC
Confidence                     012478888999999999976443332 333342  123345556777999999987322232  334443


Q ss_pred             CCCCHHHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKE  311 (452)
Q Consensus       298 ~r~d~e~l~~~a~~  311 (452)
                         +.+++.++++.
T Consensus       155 ---~~~e~~~~~~~  165 (166)
T PF04055_consen  155 ---NDEEIEETIRF  165 (166)
T ss_dssp             ---SHHHHHHHHHH
T ss_pred             ---CHHHHHHHhCc
Confidence               35666666654

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=91.31  E-value=7.9  Score=38.65  Aligned_cols=108  Identities=16%  Similarity=0.157  Sum_probs=74.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+.+.-+..|.+     ..|.+|-.+.++.+++.++. ..+|.+.+.         ..+.+...++++
T Consensus        26 ~~i~~l~~~Gv~gl~~~GstGE~~-----~Lt~~Er~~l~~~~~~~~~~-~~~vi~gv~---------~~st~~~i~~a~   90 (289)
T PF00701_consen   26 RLIDFLIEAGVDGLVVLGSTGEFY-----SLTDEERKELLEIVVEAAAG-RVPVIAGVG---------ANSTEEAIELAR   90 (289)
T ss_dssp             HHHHHHHHTTSSEEEESSTTTTGG-----GS-HHHHHHHHHHHHHHHTT-SSEEEEEEE---------SSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHccC-ceEEEecCc---------chhHHHHHHHHH
Confidence            467778889999999988888863     46777777766666666543 345543332         235788889999


Q ss_pred             HHHHCCcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949          311 ELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL  354 (452)
Q Consensus       311 ~l~~~Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~  354 (452)
                      .+.++|+|.+. ++=.....+++++.+.++.+.+..+ .+|-++-
T Consensus        91 ~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~-~pi~iYn  134 (289)
T PF00701_consen   91 HAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATD-LPIIIYN  134 (289)
T ss_dssp             HHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS-SEEEEEE
T ss_pred             HHhhcCceEEEEeccccccchhhHHHHHHHHHHhhcC-CCEEEEE
Confidence            99999999664 4455666788888888888886543 3455443

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=91.25  E-value=13  Score=35.05  Aligned_cols=174  Identities=18%  Similarity=0.138  Sum_probs=95.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++...-.+.++.+.+.|++.|+++.--.+ +.|...-..+..+.++......+.+  ++-..                 
T Consensus        12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~-----------------   73 (220)
T PRK05581         12 SADFARLGEEVKAVEAAGADWIHVDVMDGH-FVPNLTIGPPVVEAIRKVTKLPLDVHLMVENP-----------------   73 (220)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEeCccCC-cCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCH-----------------
Confidence            356667778899999999999999632111 1222111123344454432222212  22111                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              .+.++.+.++|++.|.+....++                ...+.++.+|+.|+.+...+.     |   .++
T Consensus        74 --------~~~i~~~~~~g~d~v~vh~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~---~t~  121 (220)
T PRK05581         74 --------DRYVPDFAKAGADIITFHVEASE----------------HIHRLLQLIKSAGIKAGLVLN-----P---ATP  121 (220)
T ss_pred             --------HHHHHHHHHcCCCEEEEeeccch----------------hHHHHHHHHHHcCCEEEEEEC-----C---CCC
Confidence                    13677788999999777654333                223457888999987653221     1   122


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCC----ccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          302 PSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPV----EKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~----~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      .+.+..+.     .++|.|.+    +-+.|...+....+.++.+++..+.    ..+.+    +-|.-..|.-.++++|+
T Consensus       122 ~e~~~~~~-----~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~Ga  192 (220)
T PRK05581        122 LEPLEDVL-----DLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGA  192 (220)
T ss_pred             HHHHHHHH-----hhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCC
Confidence            33333222     23564444    2233433344556666666654432    11222    35888888888888998


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      +.|
T Consensus       193 D~v  195 (220)
T PRK05581        193 DVF  195 (220)
T ss_pred             CEE
Confidence            865

>PLN02623 pyruvate kinase

Probab=91.22  E-value=25  Score=39.17  Aligned_cols=250  Identities=12%  Similarity=0.090  Sum_probs=135.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ++..++.. ++...+.|+|+|-+.|-.++      .|-.++.+.++.. ..+.+.+.+-...                  
T Consensus       276 lTekD~~d-i~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~e------------------  330 (581)
T PLN02623        276 ITEKDWED-IKFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESAD------------------  330 (581)
T ss_pred             CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHH------------------
Confidence            56666666 56778999999988653222      1333334444332 1222323232211                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----EeeecCCCCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV----SCVVGCPVEGA  299 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l----~~~~g~p~~~r  299 (452)
                           -.+.++..++ |+|.|.|.  -.|.-...    ..++......++++.|+++|.++.+.-    ++.+ .|..+|
T Consensus       331 -----aVeNldeIl~-g~DgImIg--rgDLgvel----g~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTR  397 (581)
T PLN02623        331 -----SIPNLHSIIT-ASDGAMVA--RGDLGAEL----PIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTR  397 (581)
T ss_pred             -----HHHhHHHHHH-hCCEEEEC--cchhhhhc----CcHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCc
Confidence                 1235566555 99966654  44543222    236777778889999999999985322    0111 233333


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-cc-------EEEEeCCC--cCcHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EK-------LAVHLHDT--YGQSLPNILIS  368 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~-------l~vH~Hnd--~GlA~ANaLaA  368 (452)
                         .++.+++.. ...|++.|.|. ||.=...|.+..+++..+..+.-. ..       +.-+..++  --+|.+....|
T Consensus       398 ---AEv~Dva~a-v~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A  473 (581)
T PLN02623        398 ---AEVSDIAIA-VREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMA  473 (581)
T ss_pred             ---hhHHHHHHH-HHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHH
Confidence               445555543 55699988887 676677899888888887654311 00       00111111  23555566667


Q ss_pred             HHcCCCEEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCCC
Q 012949          369 LQMGISTVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGS  436 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p~  436 (452)
                      -..++.+|--|-.|--.     + |-+|- -+-++-+.++..|.-+ |+.+     .-|.+.+...+....+..|.--+.
T Consensus       474 ~~l~a~Ivv~T~sG~tA~~lSr~RP~~pI-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~G  552 (581)
T PLN02623        474 NTLGTSIIVFTRTGFMAILLSHYRPSGTI-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKEG  552 (581)
T ss_pred             HhcCCcEEEECCCcHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence            78888888888777532     0 11110 1234556666666653 6543     124555555444444445554443


Q ss_pred             C
Q 012949          437 K  437 (452)
Q Consensus       437 ~  437 (452)
                      .
T Consensus       553 D  553 (581)
T PLN02623        553 E  553 (581)
T ss_pred             C
Confidence            3

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=91.16  E-value=15  Score=35.50  Aligned_cols=108  Identities=24%  Similarity=0.261  Sum_probs=68.3

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc---HHHHHHHHHHHHHhCCCccE----EEEeCCCcCc
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQ  360 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~li~~l~~~~p~~~l----~vH~Hnd~Gl  360 (452)
                      ++.++|+|... .+.+--..-++.+.++|||.|-+.=-.|.+.   -..+.+-++.+++...+.++    +...=++.-+
T Consensus        56 v~tVigFP~G~-~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei  134 (211)
T TIGR00126        56 ICTVVGFPLGA-STTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI  134 (211)
T ss_pred             EEEEeCCCCCC-CcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence            45567788765 4444444455778889999998887788544   46677777887776544332    2222122223


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      . -.+..|+++|||+|=+|-+ .+        .+.+..|++-.+.+
T Consensus       135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~  170 (211)
T TIGR00126       135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRN  170 (211)
T ss_pred             H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence            3 4566788999999998843 22        23477777665554

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=91.15  E-value=0.89  Score=46.00  Aligned_cols=119  Identities=17%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEc-CCcCCCcHHHHHHHHHHHHHh
Q 012949          267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLG-DTIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~-DT~G~~~P~~v~~li~~l~~~  344 (452)
                      |.+++++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+. .+........+..+++.+.++
T Consensus         2 lv~~~~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~   71 (287)
T PF01116_consen    2 LVNMKELLKKAKEGGYAVPA-----FN-----VYNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE   71 (287)
T ss_dssp             BHHHHHHHHHHHHHT-BEEE-----EE------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHCCCeEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence            45677889999999988752     32     23568888899999998876 44443 345555556778888888888


Q ss_pred             CCCccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          345 VPVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       345 ~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +. +|+.+|.  |-|..+.....|+++|.+  ++|+|-..+-+         | .-|-+++.+.+.
T Consensus        72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~ah~  125 (287)
T PF01116_consen   72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE---------NIAITREVVEYAHA  125 (287)
T ss_dssp             ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH---------HHHHHHHHHHHHHH
T ss_pred             cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH---------HHHHHHHHHHhhhh
Confidence            85 4676654  555559999999999998  77999887777         5 456677777774

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PLN02591 tryptophan synthase

Probab=91.13  E-value=9.2  Score=37.98  Aligned_cols=154  Identities=12%  Similarity=0.140  Sum_probs=88.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHh-----------hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSK-----------SNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~-----------~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~  298 (452)
                      +-++...+.|+|.|-+-++-||....           .+-|.+.++.++.+    +..|+ ..+++.  ++. +-.+.- 
T Consensus        20 ~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~i--lm~-Y~N~i~-   91 (250)
T PLN02591         20 EALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPIV--LFT-YYNPIL-   91 (250)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCEE--EEe-cccHHH-
Confidence            35666778999999999988883211           11244444555443    44443 334432  332 111111 


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      .   --+.++++.+.++|++.+.++|-    .+++..++.+.++++ ....|-+ .--+.-..-...+++...|.=+. .
T Consensus        92 ~---~G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl~~I~l-v~Ptt~~~ri~~ia~~~~gFIY~-V  161 (250)
T PLN02591         92 K---RGIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GIELVLL-TTPTTPTERMKAIAEASEGFVYL-V  161 (250)
T ss_pred             H---hHHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CCeEEEE-eCCCCCHHHHHHHHHhCCCcEEE-e
Confidence            1   12456788899999999999993    678888888887764 3222333 32333334455566665665443 2


Q ss_pred             cccCCCCCCCCCCCCC-cccHHHHHHHHHc
Q 012949          379 SVAGLGGCPYAKGASG-NVATEDVVYMLSG  407 (452)
Q Consensus       379 Sv~GlGecP~a~graG-NaalE~vv~~L~~  407 (452)
                      |..|.-+     .+++ ...+++.+..+++
T Consensus       162 s~~GvTG-----~~~~~~~~~~~~i~~vk~  186 (250)
T PLN02591        162 SSTGVTG-----ARASVSGRVESLLQELKE  186 (250)
T ss_pred             eCCCCcC-----CCcCCchhHHHHHHHHHh
Confidence            4444433     0344 3667888888885

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=91.08  E-value=1.8  Score=42.63  Aligned_cols=109  Identities=15%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++.+.+.|.+.|-|....-++        +    .+.-.++|+.+++.|++|-..+-.-+..+ ....+++.+.+.++
T Consensus        75 ~Yl~~~k~lGf~~IEiS~G~~~i--------~----~~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~  141 (237)
T TIGR03849        75 EYLNECDELGFEAVEISDGSMEI--------S----LEERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLIN  141 (237)
T ss_pred             HHHHHHHHcCCCEEEEcCCccCC--------C----HHHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHH
Confidence            46678999999999998654332        1    24445788999999999864433322111 12468889999999


Q ss_pred             HHHHCCcCEEEE-----------cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          311 ELHDMGCFEISL-----------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       311 ~l~~~Gad~I~L-----------~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      ...++||+.|.+           .|..|-.....+.+++    +++|..+|-|-+=+
T Consensus       142 ~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~----~~l~~eklifEAp~  194 (237)
T TIGR03849       142 KDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLA----ENVDINKVIFEAPQ  194 (237)
T ss_pred             HHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHH----hhCChhcEEEECCC
Confidence            999999976654           4444444444444444    44665456665544

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.04  E-value=6  Score=42.36  Aligned_cols=148  Identities=11%  Similarity=0.067  Sum_probs=87.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ..+.++.++=++.|.+.|++.|.+....   ...... ..+..++++.+... ...++-..+..              +.
T Consensus       177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~-~~~l~~Ll~~l~~~~~~~rir~~~~~--------------p~  241 (445)
T PRK14340        177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA-GADFAGLLDAVSRAAPEMRIRFTTSH--------------PK  241 (445)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC-CchHHHHHHHHhhcCCCcEEEEccCC--------------hh
Confidence            4688899999999999999988774211   011000 01344555555432 22222211110              00


Q ss_pred             hhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949          220 SVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC  294 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~  294 (452)
                      .       ...+-++...++  |...+++.+ +.||.-++. .|+.  ...+.+.++++.+|+.  |+.+.+++.  +|.
T Consensus       242 ~-------l~~ell~~~~~~~~g~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~I--vGf  309 (445)
T PRK14340        242 D-------ISESLVRTIAARPNICNHIHLPVQSGSSRMLRR-MNRG--HTIEEYLEKIALIRSAIPGVTLSTDLI--AGF  309 (445)
T ss_pred             h-------cCHHHHHHHHhCCCCCCeEEECCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEeccEE--EEC
Confidence            0       112345555554  688899876 556654443 3332  2345666788999988  998887776  677


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      |.++   .+.+.+.++.+.+.+.+.+.
T Consensus       310 PgET---~edf~~tl~~~~~~~~~~~~  333 (445)
T PRK14340        310 CGET---EEDHRATLSLMEEVRFDSAF  333 (445)
T ss_pred             CCCC---HHHHHHHHHHHHhcCCCEEe
Confidence            8774   56677777777777776554

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=91.04  E-value=3.6  Score=41.66  Aligned_cols=103  Identities=17%  Similarity=0.150  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCc-HHHHHHHHHHHHHhC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGT-PGTVVPMLEAVMAVV  345 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~-P~~v~~li~~l~~~~  345 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.... .++. ...+..+++.+.++.
T Consensus         5 ~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~   74 (286)
T PRK08610          5 SMKEMLIDAKENGYAVGQ-----YN-----LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDL   74 (286)
T ss_pred             cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHc
Confidence            346777899999987642     21     23678888899999998877 44444332 2223 355788888888777


Q ss_pred             CC-ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949          346 PV-EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  383 (452)
Q Consensus       346 p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  383 (452)
                      +. +|+.+|.  |.|.-+.....|+++|.+  ++|+|-..+
T Consensus        75 ~~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~  113 (286)
T PRK08610         75 NITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPF  113 (286)
T ss_pred             CCCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence            52 4677655  667678899999999998  779887644

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=90.97  E-value=5  Score=40.19  Aligned_cols=104  Identities=18%  Similarity=0.128  Sum_probs=59.3

Q ss_pred             hHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++..++. |++.|-+.-+..|.     ...|.+|-.+.++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~i~~l~~~~Gv~gi~~~GstGE~-----~~Lt~~Er~~~~~~~~~~~~~-~~~viagv---------~~~~~~~ai~~a~   90 (288)
T cd00954          26 IVDYLIEKQGVDGLYVNGSTGEG-----FLLSVEERKQIAEIVAEAAKG-KVTLIAHV---------GSLNLKESQELAK   90 (288)
T ss_pred             HHHHHHhcCCCCEEEECcCCcCc-----ccCCHHHHHHHHHHHHHHhCC-CCeEEecc---------CCCCHHHHHHHHH
Confidence            56677777 88888887777664     234556555555555554432 23332111         2234566777777


Q ss_pred             HHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCccE
Q 012949          311 ELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEKL  350 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~l  350 (452)
                      .+.++|||.+.+.=. .-..+++++.+.++.+.+..|+.+|
T Consensus        91 ~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi  131 (288)
T cd00954          91 HAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPM  131 (288)
T ss_pred             HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            777777776654222 2223556677777777666643333

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=90.87  E-value=5.5  Score=39.23  Aligned_cols=140  Identities=16%  Similarity=0.197  Sum_probs=89.2

Q ss_pred             HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF  233 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i  233 (452)
                      ...|..+.++.|-.|.-+.. |+   ...+++.+.++.-. ...++.++...                          -+
T Consensus        64 ~~ll~~a~~dvi~~~cTsgs-~~---~G~~~~~~~i~~~~-~g~p~tt~~~A--------------------------~~  112 (239)
T TIGR02990        64 ALILPDEELDVVAYSCTSAS-VV---IGDDEVTRAINAAK-PGTPVVTPSSA--------------------------AV  112 (239)
T ss_pred             HHhcCCCCCCEEEEccchhh-ee---cCHHHHHHHHHhcC-CCCCeeCHHHH--------------------------HH
Confidence            34445589999988743221 11   12345666665421 12333333221                          44


Q ss_pred             HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVAYVAK  310 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l~~~a~  310 (452)
                      ++..+.|+++|.+..|=.+               +--..+.++..+.|++|.....  +|..+.   ++.+++.+.+.++
T Consensus       113 ~AL~alg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~--~~~~~~~~ia~i~p~~i~~~~~  175 (239)
T TIGR02990       113 DGLAALGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTC--LGLTDDREMARISPDCIVEAAL  175 (239)
T ss_pred             HHHHHcCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeec--cCCCCCceeeecCHHHHHHHHH
Confidence            5566779999999987433               1123456778889999864333  444332   4689999999999


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      ++...++|.|.+..|     =..+.++|+.+-+.++
T Consensus       176 ~~~~~~aDAifisCT-----nLrt~~vi~~lE~~lG  206 (239)
T TIGR02990       176 AAFDPDADALFLSCT-----ALRAATCAQRIEQAIG  206 (239)
T ss_pred             HhcCCCCCEEEEeCC-----CchhHHHHHHHHHHHC
Confidence            998889999999865     3556777777777664

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>TIGR01496 DHPS dihydropteroate synthase

Probab=90.82  E-value=2.1  Score=42.56  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=55.5

Q ss_pred             CCCC-CCHHHHHHHHHHHHHCCcCEEEEcC-CcC----CCcHH-H---HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHH
Q 012949          296 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-TIG----VGTPG-T---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNI  365 (452)
Q Consensus       296 ~~~r-~d~e~l~~~a~~l~~~Gad~I~L~D-T~G----~~~P~-~---v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANa  365 (452)
                      +.++ .+++.+.+.++.+.+.||+.|-+.- +..    ..+|+ +   +..+|+.+++.+. .+|.+|.++.     .-.
T Consensus        15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~-~plsiDT~~~-----~vi   88 (257)
T TIGR01496        15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPD-VPISVDTYRA-----EVA   88 (257)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCC-CeEEEeCCCH-----HHH
Confidence            3445 4789999999999999999999941 111    11333 3   6666777766554 5899999985     455


Q ss_pred             HHHHHcCCCEEeec
Q 012949          366 LISLQMGISTVDCS  379 (452)
Q Consensus       366 LaAl~aGa~~VD~S  379 (452)
                      .+|+++|+++|+-.
T Consensus        89 ~~al~~G~~iINsi  102 (257)
T TIGR01496        89 RAALEAGADIINDV  102 (257)
T ss_pred             HHHHHcCCCEEEEC
Confidence            67888899988654

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=90.81  E-value=8.6  Score=37.68  Aligned_cols=124  Identities=15%  Similarity=0.059  Sum_probs=69.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-EEe----eecCCCCC--CCCH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSC----VVGCPVEG--AIPP  302 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~-l~~----~~g~p~~~--r~d~  302 (452)
                      +.++.+.++|.+.|-+....  .+.. ....++.    ..+.++.+.+++.|+++... +..    .++.++..  ....
T Consensus        20 e~~~~~~~~G~~~iEl~~~~--~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~   93 (284)
T PRK13210         20 ERLVFAKELGFDFVEMSVDE--SDERLARLDWSK----EERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERAL   93 (284)
T ss_pred             HHHHHHHHcCCCeEEEecCC--cccccccccCCH----HHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHH
Confidence            57899999999999986432  1110 0112332    23456677889999998631 111    11111110  0123


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCcCc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTYGQ  360 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~Gl  360 (452)
                      +.+.+.++.+.++|++.|.+.....   ...+.....+++.+++..     -++.|.+|.|.+.-+
T Consensus        94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~  159 (284)
T PRK13210         94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTPFM  159 (284)
T ss_pred             HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcccc
Confidence            4567788888999999999852211   122344444444444322     246899999865433

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=90.81  E-value=20  Score=36.19  Aligned_cols=181  Identities=16%  Similarity=0.122  Sum_probs=99.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+.-.++++.+.+.|++-|=++.....  .+.+. .+|-.+.++   +..+-++++++- ..         .....+
T Consensus        17 ~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE--~~~Ls-~~Er~~l~~~~~~~~~g~~pvi~g-v~---------~~~t~~   83 (294)
T TIGR02313        17 DIDEEALRELIEFQIEGGSHAISVGGTSGE--PGSLT-LEERKQAIENAIDQIAGRIPFAPG-TG---------ALNHDE   83 (294)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccCC-HHHHHHHHHHHHHHhCCCCcEEEE-CC---------cchHHH
Confidence            478999999999999999998877533221  13332 233344433   222223333321 10         000011


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--C
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--G  298 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~  298 (452)
                              ..+-.+.|.+.|+|.+.+..+.-       +.-+.++.++-+..+++.+.  ++++..|     ..|..  .
T Consensus        84 --------ai~~a~~A~~~Gad~v~v~pP~y-------~~~~~~~l~~~f~~ia~a~~--~lpv~iY-----n~P~~tg~  141 (294)
T TIGR02313        84 --------TLELTKFAEEAGADAAMVIVPYY-------NKPNQEALYDHFAEVADAVP--DFPIIIY-----NIPGRAAQ  141 (294)
T ss_pred             --------HHHHHHHHHHcCCCEEEEcCccC-------CCCCHHHHHHHHHHHHHhcc--CCCEEEE-----eCchhcCc
Confidence                    12355677889999998876531       23355555555555544321  5666532     23432  2


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ..+++.+.+++++    -...+.++||.|-  ...+.+++    +..+. .+.+ .+++      ...+.++.+|++..
T Consensus       142 ~l~~~~l~~L~~~----~pnv~giK~ss~d--~~~~~~~~----~~~~~-~~~v~~G~d------~~~~~~l~~Ga~G~  203 (294)
T TIGR02313       142 EIAPKTMARLRKD----CPNIVGAKESNKD--FEHLNHLF----LEAGR-DFLLFCGIE------LLCLPMLAIGAAGS  203 (294)
T ss_pred             CCCHHHHHHHHhh----CCCEEEEEeCCCC--HHHHHHHH----HhcCC-CeEEEEcch------HHHHHHHHCCCCEE
Confidence            4567766666642    2479999999874  34444443    33343 3444 3333      55667888998643

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK10481 hypothetical protein; Provisional

Probab=90.78  E-value=9.8  Score=37.25  Aligned_cols=132  Identities=25%  Similarity=0.263  Sum_probs=79.8

Q ss_pred             CCccccCCCCCCCCCHHHHH----HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhh
Q 012949          132 VGPRDGLQNEKNTVPTGVKV----ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVI  207 (452)
Q Consensus       132 ~TLRDG~Q~~~~~~~~~~k~----~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~  207 (452)
                      +=||||.|.   .++.....    ..+..|++.|++.|-+..+..   +|.+.       ..+.      ..+.|.+-  
T Consensus        60 trL~dG~~v---~~s~~~v~~~lq~~i~~l~~~g~d~ivl~Ctgd---fp~l~-------a~r~------~l~~P~~~--  118 (224)
T PRK10481         60 TRLNDGQQV---HVSKQKVERDLQSVIEVLDNQGYDVILLLCTGE---FPSLT-------ARNA------ILLEPSRI--  118 (224)
T ss_pred             EEecCCCEE---EEEHHHHHHHHHHHHHHHHhCCCCEEEEEecCC---CCCcc-------ccCc------cccCchhh--
Confidence            459999997   45554443    446678889999998865432   12121       1110      11112110  


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                                    |        ..+-.|+..| ++|.|+.+.-+                .+....++-++.|+++...
T Consensus       119 --------------i--------~~lv~Al~~g-~riGVitP~~~----------------qi~~~~~kw~~~G~~v~~~  159 (224)
T PRK10481        119 --------------L--------PPLVAAIVGG-HQVGVIVPVEE----------------QLAQQAQKWQVLQKPPVFA  159 (224)
T ss_pred             --------------H--------HHHHHHhcCC-CeEEEEEeCHH----------------HHHHHHHHHHhcCCceeEe
Confidence                          0        1333444344 88999887533                2223445555669998722


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT  330 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~  330 (452)
                      .    .+|..  .+++.+.+.++.+.+.|+|.|.+ |-+|+.+
T Consensus       160 ~----aspy~--~~~~~l~~aa~~L~~~gaD~Ivl-~C~G~~~  195 (224)
T PRK10481        160 L----ASPYH--GSEEELIDAGKELLDQGADVIVL-DCLGYHQ  195 (224)
T ss_pred             e----cCCCC--CCHHHHHHHHHHhhcCCCCEEEE-eCCCcCH
Confidence            2    23442  56778999999999999999988 8888877

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=90.77  E-value=19  Score=38.27  Aligned_cols=149  Identities=15%  Similarity=0.165  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCC-ccc--ccCCHHHHHHHHHhccCCc-eeEEecchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPK-WVP--QLADARDVMEAVRDLEGAR-LPVLTPNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~-~~p--~~~D~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~~~~~  216 (452)
                      ..+.++.++-++.|.+.|++.|-+...   .... +..  ...+..++++.+..+++.. +....+...           
T Consensus       155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~-----------  223 (420)
T PRK14339        155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPL-----------  223 (420)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChh-----------
Confidence            368899999999999999998887532   1111 000  0113456666665444431 111111000           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEee
Q 012949          217 CHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCV  291 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~  291 (452)
                          .      ...+-++.+.++  |...+++.+ +.||.-++ ..|+.  ...+.+.++++.+++.  |+.+..+++  
T Consensus       224 ----~------~~~ell~~~~~~~~~~~~l~iglQSgsd~vLk-~M~R~--~t~~~~~~~v~~lr~~~p~i~i~~d~I--  288 (420)
T PRK14339        224 ----H------MDDKFLEEFAKNPKICKSIHMPLQSGSSEILK-AMKRG--YTKEWFLNRAEKLRALVPEVSISTDII--  288 (420)
T ss_pred             ----h------cCHHHHHHHHcCCCccCceEeCCccCCHHHHH-hccCC--CCHHHHHHHHHHHHHHCCCCEEEEEEE--
Confidence                0      122355666666  467888876 55664433 23332  1244455666777776  666766665  


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          292 VGCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      +|.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       289 vGfPgET---eedf~~Tl~fl~~l~~~~~~  315 (420)
T PRK14339        289 VGFPGES---DKDFEDTMDVLEKVRFEQIF  315 (420)
T ss_pred             EECCCCC---HHHHHHHHHHHHhcCCCEEe
Confidence            6778775   56666666666777766443

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=90.74  E-value=4.8  Score=38.59  Aligned_cols=110  Identities=17%  Similarity=0.106  Sum_probs=69.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.++|++.|.+....+                   .+.++.+++.++.+...+           .+.    +.++
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~  116 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR  116 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence            478889999999998754311                   134456666777664211           122    3345


Q ss_pred             HHHHCCcCEEEEcC--CcCCCcHH--HHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeec
Q 012949          311 ELHDMGCFEISLGD--TIGVGTPG--TVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCS  379 (452)
Q Consensus       311 ~l~~~Gad~I~L~D--T~G~~~P~--~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~S  379 (452)
                      .+.+.|+|.|.+-.  +.|...+.  ...++++.+++.++ .++-..+    |... .|...++.+|++.|...
T Consensus       117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vg  185 (236)
T cd04730         117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMG  185 (236)
T ss_pred             HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEc
Confidence            56678999887732  22333332  34567788877654 3555543    6655 78888999999988765

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=90.70  E-value=1.3  Score=43.95  Aligned_cols=94  Identities=17%  Similarity=0.089  Sum_probs=61.6

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCCHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIPPSKVA  306 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d~e~l~  306 (452)
                      .+.++.+.+.|.+.|-|....-++            ..+.-.++|+.+++.|++|-.    .+|.-+.   ...+++.+.
T Consensus        87 ~~yl~~~k~lGf~~IEiSdGti~l------------~~~~r~~~I~~~~~~Gf~v~~----EvG~K~~~~~~~~~~~~~i  150 (244)
T PF02679_consen   87 DEYLEECKELGFDAIEISDGTIDL------------PEEERLRLIRKAKEEGFKVLS----EVGKKDPESDFSLDPEELI  150 (244)
T ss_dssp             HHHHHHHHHCT-SEEEE--SSS---------------HHHHHHHHHHHCCTTSEEEE----EES-SSHHHHTT--CCHHH
T ss_pred             HHHHHHHHHcCCCEEEecCCceeC------------CHHHHHHHHHHHHHCCCEEee----cccCCCchhcccCCHHHHH
Confidence            357889999999999998765443            123445788999999999863    2443332   234578999


Q ss_pred             HHHHHHHHCCcCEEEE----------cCCcCCCcHHHHHHHHH
Q 012949          307 YVAKELHDMGCFEISL----------GDTIGVGTPGTVVPMLE  339 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L----------~DT~G~~~P~~v~~li~  339 (452)
                      +.++...++||+.|.+          .|..|-...+.+.++++
T Consensus       151 ~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~  193 (244)
T PF02679_consen  151 EQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEKIIE  193 (244)
T ss_dssp             HHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHHHHT
T ss_pred             HHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHHHHH
Confidence            9999999999997754          56677777777777765

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=90.64  E-value=2.2  Score=44.56  Aligned_cols=77  Identities=18%  Similarity=0.251  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEe---------CCCcCcHHHHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHL---------HDTYGQSLPNILI  367 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~---------Hnd~GlA~ANaLa  367 (452)
                      ..++|.+.+.++.+.++|+.+|.|..-.+...  ++.+.++++.+|+.+|.  +.+|+         -.+.|+..-..+.
T Consensus        90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~  167 (371)
T PRK07360         90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK  167 (371)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence            46889999999999999999999983222221  45688999999998875  33442         2367888888777


Q ss_pred             HH-HcCCCEEe
Q 012949          368 SL-QMGISTVD  377 (452)
Q Consensus       368 Al-~aGa~~VD  377 (452)
                      .+ +||++.+.
T Consensus       168 ~LkeAGld~~~  178 (371)
T PRK07360        168 ALKDAGLDSMP  178 (371)
T ss_pred             HHHHcCCCcCC
Confidence            77 69999885

>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]

Probab=90.59  E-value=21  Score=36.14  Aligned_cols=219  Identities=19%  Similarity=0.256  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCC-Ccc-cccC-CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSP-KWV-PQLA-DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~-~~~-p~~~-D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      .-...+....+.|.+.+|+= +++| .|. |.++ |..+......+ ....+.+..|=.-++       .....+..+..
T Consensus        15 ~~~~~~~~a~~iG~na~~if-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~vHApYlINl-------~s~~~e~~ekS   85 (280)
T COG0648          15 SLVNAVERAREIGLNAFEIF-LVNPRVWISPPLAEDAIELFKAALK-DDVQLSVHAPYLINL-------ASPEKEKVEKS   85 (280)
T ss_pred             hHHHHHHHHHHcCCCEEEEE-ecCcccccCCCchHHHHHHHHHhhc-cCceEEeecceeecC-------CCCCHHHHHHH
Confidence            34666777888999999983 3444 232 2232 11222222212 123344433311100       01111112211


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                      +..-.+.++++...|+..|.+--.       ...+.+.++.++++.+.++.+-+ .+  |.+.+...-|.-..-....+.
T Consensus        86 ~~~l~~e~~r~~~lG~~~lv~HpG-------~~~~~~~e~~l~~i~~~Ln~~~~~~~--v~i~~e~~agegs~~g~~F~~  156 (280)
T COG0648          86 IERLIDEIDRCEQLGAKLLVFHPG-------SYLGQGKEEGLNRIAEALNELLEEEG--VIILLENTAGEGSGKGTQFGE  156 (280)
T ss_pred             HHHHHHHHHHHHHcCCcEEEECCc-------cccCCCHHHHHHHHHHHHHHHhhccC--CeEEEEEeccccCccccchhh
Confidence            112235788888899998776433       23567789999999999988877 45  444444332211111356778


Q ss_pred             HHHHHHHHHHCCcCEEEEcCC-------cCCCcHHHHHHHHHHHHHhCCCc-cEEEEeCCCcCcHHHHHHHHHHcCC--C
Q 012949          305 VAYVAKELHDMGCFEISLGDT-------IGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGI--S  374 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT-------~G~~~P~~v~~li~~l~~~~p~~-~l~vH~Hnd~GlA~ANaLaAl~aGa--~  374 (452)
                      +.++.+...+..--.+|| ||       .|..+++.+.++++.+-+.++-. ...+|+-+-         .- ..|.  |
T Consensus       157 L~eii~~~~~~~~igvCi-DtcH~~Aagy~~~~~~~~~~vl~~~d~~~G~~~~~~~Hlnds---------k~-~~G~~kD  225 (280)
T COG0648         157 LAEIIDLIEEKERIGVCI-DTCHAFAAGYDIITEEDFEKVLNEFDKVLGLEYLKHIHLNDS---------KY-PLGSNKD  225 (280)
T ss_pred             HHHHHHhhcccCceEEEE-EchhhhhccCCcCcHHHHHHHHHHHHHHhChhhheeEeecCc---------cc-ccccccc
Confidence            888887776654334444 55       67788888999999998887642 234444321         11 2343  3


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                      + +.   -+|        .|+...|.+...++..
T Consensus       226 R-H~---~ig--------~G~ig~e~l~~~~~d~  247 (280)
T COG0648         226 R-HE---NIG--------EGYIGFEALRKILKDF  247 (280)
T ss_pred             c-cc---ccC--------CCCCChHHHHHHHhcc
Confidence            2 11   233        4788889999999863

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=90.57  E-value=24  Score=36.67  Aligned_cols=183  Identities=13%  Similarity=0.118  Sum_probs=108.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.++.+++|+.|.++|.+.+-.|.|   .+|.-.-.+.  ++=++.+++ .....+.+++.-.                 
T Consensus       105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g--~~gL~~L~~~~~~~Gl~v~tev~-----------------  165 (335)
T PRK08673        105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLG--EEGLKLLAEAREETGLPIVTEVM-----------------  165 (335)
T ss_pred             CHHHHHHHHHHHHHhchhhccCcEecCCCCCccccccc--HHHHHHHHHHHHHcCCcEEEeeC-----------------
Confidence            7899999999999999998777654   2332111111  333344433 2223344443211                 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                             ..++++.+.+. ++.+.|...  +.              ++ ..+++++-+.|.+|-  |+.    .  .-.+
T Consensus       166 -------d~~~~~~l~~~-vd~lqIgAr--~~--------------~N-~~LL~~va~~~kPVi--Lk~----G--~~~t  212 (335)
T PRK08673        166 -------DPRDVELVAEY-VDILQIGAR--NM--------------QN-FDLLKEVGKTNKPVL--LKR----G--MSAT  212 (335)
T ss_pred             -------CHHHHHHHHHh-CCeEEECcc--cc--------------cC-HHHHHHHHcCCCcEE--EeC----C--CCCC
Confidence                   12367777777 888777543  11              11 144466667788875  332    1  1236


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCC--cCC-CcHHHHHH--HHHHHHHhCCCccE-EEEeCC--CcCcHHHHHHHHHHcCC
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDT--IGV-GTPGTVVP--MLEAVMAVVPVEKL-AVHLHD--TYGQSLPNILISLQMGI  373 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT--~G~-~~P~~v~~--li~~l~~~~p~~~l-~vH~Hn--d~GlA~ANaLaAl~aGa  373 (452)
                      ++.+...++.+...|-+.|.|+.-  ..+ -.|....+  .+..+++.+. .|+ ..=.|-  ..-+...-+++|+.+||
T Consensus       213 i~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GA  291 (335)
T PRK08673        213 IEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGA  291 (335)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCC
Confidence            888888999999999988888873  122 22233222  3556666554 345 443443  33455678999999999


Q ss_pred             C--EEeeccc
Q 012949          374 S--TVDCSVA  381 (452)
Q Consensus       374 ~--~VD~Sv~  381 (452)
                      +  .|+.-..
T Consensus       292 dGliIE~H~~  301 (335)
T PRK08673        292 DGLIVEVHPD  301 (335)
T ss_pred             CEEEEEecCC
Confidence            9  7776554

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=90.56  E-value=6.1  Score=38.98  Aligned_cols=131  Identities=16%  Similarity=0.116  Sum_probs=76.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSN--INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ....+.++|++.|.+..+..-...-..  ...+.++.+..++.+.+.++  ..+|.+.      .|..+--+++.+.+.+
T Consensus        24 sA~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD------~~~G~g~~~~~~~~~~   95 (240)
T cd06556          24 MAKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVAD------LPFGAYGAPTAAFELA   95 (240)
T ss_pred             HHHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEe------CCCCCCcCHHHHHHHH
Confidence            345566789998887643221111000  13456666666655544332  1344432      3333333668899999


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC------CcC-------------cHHHHHHHHHH
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD------TYG-------------QSLPNILISLQ  370 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn------d~G-------------lA~ANaLaAl~  370 (452)
                      +++.++||+.|.|-|..      ++.+.|+.+++.-  ++|--|+=-      +.|             -++.-+.+-.+
T Consensus        96 ~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~  167 (240)
T cd06556          96 KTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDEAGEQLIADALAYAP  167 (240)
T ss_pred             HHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHHHHHHHHHHHHHHHH
Confidence            99999999999999963      4556677777642  334444322      111             34555666678


Q ss_pred             cCCCEEee
Q 012949          371 MGISTVDC  378 (452)
Q Consensus       371 aGa~~VD~  378 (452)
                      |||+.|=.
T Consensus       168 AGAd~i~~  175 (240)
T cd06556         168 AGADLIVM  175 (240)
T ss_pred             cCCCEEEE
Confidence            88886644

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=90.54  E-value=1.9  Score=43.38  Aligned_cols=82  Identities=10%  Similarity=0.042  Sum_probs=66.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .++.|.+.+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+..++ ++|-+|.-.+..-++..+..|-++|
T Consensus        15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~G   94 (289)
T cd00951          15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAG   94 (289)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999999988   45677777888877777643 5666666556677788888899999


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      |+.+=.
T Consensus        95 ad~v~~  100 (289)
T cd00951          95 ADGILL  100 (289)
T ss_pred             CCEEEE
Confidence            998744

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=90.49  E-value=18  Score=37.47  Aligned_cols=234  Identities=22%  Similarity=0.281  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      +.+..++=+..|.++|.+.+-++-       |.+.+++ -+..|++-.++.|.+   .    |+    |.          
T Consensus        34 Dv~aTv~QI~~L~~aG~dIVRvtv-------~~~e~A~-A~~~Ik~~~~vPLVa---D----iH----f~----------   84 (361)
T COG0821          34 DVEATVAQIKALERAGCDIVRVTV-------PDMEAAE-ALKEIKQRLNVPLVA---D----IH----FD----------   84 (361)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEec-------CCHHHHH-HHHHHHHhCCCCEEE---E----ee----cc----------
Confidence            455566678889999999999974       4443443 344454433433322   1    11    00          


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------CC
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------GA  299 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~r  299 (452)
                          .+-.-.+.++|++.+||--.        |.|..     +++.++|+.||+.|++++.-+-  +|+-+.      +.
T Consensus        85 ----~rla~~~~~~g~~k~RINPG--------Nig~~-----~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~  145 (361)
T COG0821          85 ----YRLALEAAECGVDKVRINPG--------NIGFK-----DRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGG  145 (361)
T ss_pred             ----HHHHHHhhhcCcceEEECCc--------ccCcH-----HHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcC
Confidence                01334567789999998532        23221     3788999999999999995443  333221      01


Q ss_pred             CCHHHHHH----HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC-cCcHH------HHHHHH
Q 012949          300 IPPSKVAY----VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YGQSL------PNILIS  368 (452)
Q Consensus       300 ~d~e~l~~----~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd-~GlA~------ANaLaA  368 (452)
                      .++|-+++    -++.+.+.|-+.|.+  ++-...|..+.+-.+.|.+...   .-+|.==| -|++.      +-++.+
T Consensus       146 pt~ealveSAl~~a~~~e~l~f~~i~i--S~K~Sdv~~~v~aYr~lA~~~d---yPLHLGvTEAG~~~~G~VkSa~alg~  220 (361)
T COG0821         146 PTPEALVESALEHAELLEELGFDDIKV--SVKASDVQLMVAAYRLLAKRCD---YPLHLGVTEAGMGFKGIVKSAAALGA  220 (361)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCcEEE--EEEcCCHHHHHHHHHHHHHhcC---CCcccceecccCcccceehHHHHHHH
Confidence            23444333    456677778764444  3334455555554555555432   12333332 34432      222333


Q ss_pred             H-HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHH---HHcCCCCC-C-----------CChhhHHHHHHHHHHHhC
Q 012949          369 L-QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYM---LSGLGVET-N-----------VDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       369 l-~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~---L~~~Gi~t-~-----------iDl~~L~~la~~v~~~~g  431 (452)
                      | ..|+ |.|-+|+.+             -|+||+...   |+.+|+.. +           .-.+-+..+.+..++..+
T Consensus       221 LL~eGIGDTIRVSLt~-------------~P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~  287 (361)
T COG0821         221 LLSEGIGDTIRVSLTA-------------DPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEH  287 (361)
T ss_pred             HHHhcCCceEEEecCC-------------CchhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhc
Confidence            3 4664 688888874             236766543   44444431 1           223334455566666678


Q ss_pred             CCCCCCcccccchh
Q 012949          432 RPSGSKTAIALNRI  445 (452)
Q Consensus       432 ~~~p~~~pi~G~~v  445 (452)
                      .+.|-+.++.|.-|
T Consensus       288 ~~~pl~VAVMGCVV  301 (361)
T COG0821         288 LKTPLKVAVMGCVV  301 (361)
T ss_pred             cCCCceEEEEEeEe
Confidence            88888888887543

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=90.43  E-value=6.5  Score=35.90  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=49.8

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .+++|++..++.|.+.. .+-            .....+..+++.+|+.|..-.. +  ..    .+-.+++.    ...
T Consensus        55 ~v~aA~~~dv~vIgvSs-l~g------------~h~~l~~~lve~lre~G~~~i~-v--~~----GGvip~~d----~~~  110 (143)
T COG2185          55 AVRAAVEEDVDVIGVSS-LDG------------GHLTLVPGLVEALREAGVEDIL-V--VV----GGVIPPGD----YQE  110 (143)
T ss_pred             HHHHHHhcCCCEEEEEe-ccc------------hHHHHHHHHHHHHHHhCCcceE-E--ee----cCccCchh----HHH
Confidence            44556677777777653 222            3456677888999999986331 1  12    23344554    556


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHHHH
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAV  341 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l  341 (452)
                      +.++|+++|.-+.|   -..+-+..+++.+
T Consensus       111 l~~~G~~~if~pgt---~~~~~~~~v~~~l  137 (143)
T COG2185         111 LKEMGVDRIFGPGT---PIEEALSDLLTRL  137 (143)
T ss_pred             HHHhCcceeeCCCC---CHHHHHHHHHHHH
Confidence            78899999998865   2333444444443

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=90.41  E-value=11  Score=36.24  Aligned_cols=152  Identities=20%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHH----hcc----CCceeEEecchhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR----DLE----GARLPVLTPNLKVILQRSILF  214 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~----~~~----~~~l~~l~~~~~~~i~r~~~~  214 (452)
                      .++.+..++=++.+.+.|-++|++|.-+ .|.. .. -+.++.++.+.    .+.    ++.++.=+++           
T Consensus        15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~-~~-v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~-----------   81 (210)
T PF00809_consen   15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGA-TP-VSEEEEMERLVPVLQAIREENPDVPLSIDTFN-----------   81 (210)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTS-SS-SHHHHHHHHHHHHHHHHHHHHTTSEEEEEESS-----------
T ss_pred             ccCHHHHHHHHHHHHHhcCCEEEecccccCCCC-Cc-CCHHHHHHHHHHHHHHHhccCCCeEEEEECCC-----------
Confidence            3556666677999999999999999654 2321 11 23334444433    332    3333321222           


Q ss_pred             hhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC
Q 012949          215 QQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  294 (452)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~  294 (452)
                                     .+-+++|++.|++.|.-..+..+                 ..++++.+++.|..+.  +++.-+.
T Consensus        82 ---------------~~v~~~aL~~g~~~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~  127 (210)
T PF00809_consen   82 ---------------PEVAEAALKAGADIINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGN  127 (210)
T ss_dssp             ---------------HHHHHHHHHHTSSEEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSE
T ss_pred             ---------------HHHHHHHHHcCcceEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccc
Confidence                           23678888889997765554321                 2355677888888765  4544322


Q ss_pred             CCCCCCCH----HHHHHHHHH-------HHHCCc--CEEEEcCCcCCC-cHHHHHHHHHHHH
Q 012949          295 PVEGAIPP----SKVAYVAKE-------LHDMGC--FEISLGDTIGVG-TPGTVVPMLEAVM  342 (452)
Q Consensus       295 p~~~r~d~----e~l~~~a~~-------l~~~Ga--d~I~L~DT~G~~-~P~~v~~li~~l~  342 (452)
                      |..-..++    +.+.++.+.       +.++|+  +.|.+==-+|.. ++.+-.++++.++
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~  189 (210)
T PF00809_consen  128 PKGMPETADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE  189 (210)
T ss_dssp             TTTTTSSHHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred             cccccccchhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence            32222222    223333333       444898  688873344442 2445555555444

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=90.37  E-value=15  Score=36.05  Aligned_cols=157  Identities=13%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhc-CCCHHHHH------HHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNI-NCSIEDSL------VRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~-~~s~e~~l------~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                      +.++...++|+|.+++-++-||....-.+ ....+.+|      +...+.++..|+. .+++.  +|.-+ .|.-     
T Consensus        18 ~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~--lm~y~-n~~~-----   89 (242)
T cd04724          18 EILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIV--LMGYY-NPIL-----   89 (242)
T ss_pred             HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEE--EEEec-CHHH-----
Confidence            36777888999999998777764322111 00011222      2445566777754 45543  43211 1110     


Q ss_pred             HH-HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          303 SK-VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       303 e~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+ +.++++.+.++|++.|.++|-    .|++..++++.++++-.  ...+=+-.+.-......+.....|.-++=+.-.
T Consensus        90 ~~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~--~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g  163 (242)
T cd04724          90 QYGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGL--DLIFLVAPTTPDERIKKIAELASGFIYYVSRTG  163 (242)
T ss_pred             HhCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCC
Confidence            11 356788889999999999995    57888888888887532  222222222222222222222233333323333


Q ss_pred             CCCCCCCCCCCCC-cccHHHHHHHHHc
Q 012949          382 GLGGCPYAKGASG-NVATEDVVYMLSG  407 (452)
Q Consensus       382 GlGecP~a~graG-NaalE~vv~~L~~  407 (452)
                      |-|+      .++ ...+.+.+..++.
T Consensus       164 ~tG~------~~~~~~~~~~~i~~lr~  184 (242)
T cd04724         164 VTGA------RTELPDDLKELIKRIRK  184 (242)
T ss_pred             CCCC------ccCCChhHHHHHHHHHh
Confidence            4444      443 3557777777775

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=90.37  E-value=1.9  Score=43.25  Aligned_cols=84  Identities=12%  Similarity=0.071  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++..++ .+|-+|. +++..-++..+..|-++|
T Consensus        17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G   96 (292)
T PRK03170         17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG   96 (292)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence            568889999999999999999999999998   67888888888888887754 4566654 668888899999999999


Q ss_pred             CCEEeeccc
Q 012949          373 ISTVDCSVA  381 (452)
Q Consensus       373 a~~VD~Sv~  381 (452)
                      ++.|=..--
T Consensus        97 ~d~v~~~pP  105 (292)
T PRK03170         97 ADGALVVTP  105 (292)
T ss_pred             CCEEEECCC
Confidence            998776543

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=90.33  E-value=2.4  Score=45.51  Aligned_cols=72  Identities=11%  Similarity=0.044  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +..+-++.+.++|++.|.+ |+.-..+ ..+.+.|+.+++.+|+.+|..    -..+-...+..++++||+.|.+++.
T Consensus       224 ~~~~r~~~L~~aG~d~I~v-d~a~g~~-~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g  295 (450)
T TIGR01302       224 FDKERAEALVKAGVDVIVI-DSSHGHS-IYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG  295 (450)
T ss_pred             hHHHHHHHHHHhCCCEEEE-ECCCCcH-hHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence            4445667889999999988 5544333 468889999999998877766    3345567888999999999999764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=90.32  E-value=6.9  Score=40.18  Aligned_cols=132  Identities=18%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++..+.++.|.++|++.|++.+.. .+.      ...+.++.+++... .+.+++.+..                     
T Consensus        93 ~~~~~~~~~l~eagv~~I~vd~~~G~~~------~~~~~i~~ik~~~p-~v~Vi~G~v~---------------------  144 (325)
T cd00381          93 EDDKERAEALVEAGVDVIVIDSAHGHSV------YVIEMIKFIKKKYP-NVDVIAGNVV---------------------  144 (325)
T ss_pred             hhHHHHHHHHHhcCCCEEEEECCCCCcH------HHHHHHHHHHHHCC-CceEEECCCC---------------------
Confidence            445678888999999999986422 111      12334444443211 2333332221                     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                        +.++.+.+.++|+|.|.+-...--.+... ..+..+. .+..+.++.+++++.+++|.         .+.+-.++..+
T Consensus       145 --t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVI---------A~GGI~~~~di  212 (325)
T cd00381         145 --TAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVI---------ADGGIRTSGDI  212 (325)
T ss_pred             --CHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEE---------ecCCCCCHHHH
Confidence              33578889999999998732210001011 1111111 23445566677777787764         13444455554


Q ss_pred             HHHHHHHHHCCcCEEEEc
Q 012949          306 AYVAKELHDMGCFEISLG  323 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~  323 (452)
                      .+.   + .+||+.+.+.
T Consensus       213 ~kA---l-a~GA~~VmiG  226 (325)
T cd00381         213 VKA---L-AAGADAVMLG  226 (325)
T ss_pred             HHH---H-HcCCCEEEec
Confidence            433   3 4899988773

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=90.31  E-value=9  Score=40.14  Aligned_cols=145  Identities=20%  Similarity=0.112  Sum_probs=88.2

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-CC--cEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SI--PVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G~--~V~~~l~~~~g~p~~  297 (452)
                      +..++|+++|.|.|.|..+        .|+..++.  .+|-|.|+=+....++++.+|+. |.  .|..-|+..- ....
T Consensus       153 ~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d-~~~~  231 (363)
T COG1902         153 RAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDD-FFDG  231 (363)
T ss_pred             HHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc-cCCC
Confidence            4566788899999988532        23333333  36778898888888988888874 43  3554455321 1122


Q ss_pred             CCCCHHHHHHHHHHHHHCC-cCEEEEcCCcC----CCc---HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMG-CFEISLGDTIG----VGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL  369 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G----~~~---P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl  369 (452)
                      .-.+++...++++.+.+.| +|.|.+.--.-    ...   |.......+.+++... +++. +.  ........+..++
T Consensus       232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~-~pvi-~~--G~i~~~~~Ae~~l  307 (363)
T COG1902         232 GGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVR-IPVI-AV--GGINDPEQAEEIL  307 (363)
T ss_pred             CCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcC-CCEE-Ee--CCCCCHHHHHHHH
Confidence            2457889999999999999 68776643221    111   2233345555666543 2221 11  1244566778889


Q ss_pred             HcC-CCEEeecccCCCC
Q 012949          370 QMG-ISTVDCSVAGLGG  385 (452)
Q Consensus       370 ~aG-a~~VD~Sv~GlGe  385 (452)
                      +.| ||.|     |+|.
T Consensus       308 ~~g~aDlV-----a~gR  319 (363)
T COG1902         308 ASGRADLV-----AMGR  319 (363)
T ss_pred             HcCCCCEE-----Eech
Confidence            998 6654     5665

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=90.28  E-value=21  Score=37.24  Aligned_cols=232  Identities=24%  Similarity=0.248  Sum_probs=123.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      -+.+.-++=++.|.++|.+.+-+..       |.+.+++ -+..+++..++.+.+   .    |+    |          
T Consensus        39 ~Dv~atv~Qi~~L~~aGceiVRvav-------~~~~~a~-al~~I~~~~~iPlvA---D----IH----F----------   89 (360)
T PRK00366         39 ADVEATVAQIKRLARAGCEIVRVAV-------PDMEAAA-ALPEIKKQLPVPLVA---D----IH----F----------   89 (360)
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEcc-------CCHHHHH-hHHHHHHcCCCCEEE---e----cC----C----------
Confidence            3455666678889999999999975       4333333 334444322333222   1    11    0          


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------C
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------G  298 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~  298 (452)
                          ..+-.-.|++.|++.|||--.        |++.    .-+++.++++.||++|+.++.-+-  .|+-..      +
T Consensus        90 ----d~~lAl~a~~~G~~~iRINPG--------Nig~----~~~~v~~vv~~ak~~~ipIRIGvN--~GSL~~~~~~~yg  151 (360)
T PRK00366         90 ----DYRLALAAAEAGADALRINPG--------NIGK----RDERVREVVEAAKDYGIPIRIGVN--AGSLEKDLLEKYG  151 (360)
T ss_pred             ----CHHHHHHHHHhCCCEEEECCC--------CCCc----hHHHHHHHHHHHHHCCCCEEEecC--CccChHHHHHHcC
Confidence                011334577889999998432        2321    125677899999999999984443  232211      1


Q ss_pred             CCCHHHHH----HHHHHHHHCCcCE--EEEcCCcCCCcHHHHHHHHHHHHHhC--CCccEEEEeCCCcCcHHHH---HHH
Q 012949          299 AIPPSKVA----YVAKELHDMGCFE--ISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPN---ILI  367 (452)
Q Consensus       299 r~d~e~l~----~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~li~~l~~~~--p~~~l~vH~Hnd~GlA~AN---aLa  367 (452)
                      ..+++-++    +.++.+.+.|-+.  |+++.|    .+..+-+-.+.+.+..  |- .|++-=--+.-.++-.   .+.
T Consensus       152 ~~t~eamveSAl~~~~~le~~~f~~iviS~KsS----~v~~~i~ayrlla~~~dyPL-HlGvTEAG~~~~G~iKSa~gig  226 (360)
T PRK00366        152 EPTPEALVESALRHAKILEELGFDDIKISVKAS----DVQDLIAAYRLLAKRCDYPL-HLGVTEAGMGFKGTVKSAAGLG  226 (360)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----CHHHHHHHHHHHHhcCCCCc-eecccCCCCCCCceehhHHHHH
Confidence            12344333    3556777888764  444443    4544444444444443  31 2222111122222222   222


Q ss_pred             HH-HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHHH---HcCCCC--------------CCCChhhHHHHHHHHHH
Q 012949          368 SL-QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVE--------------TNVDLRKLMLAGDFINK  428 (452)
Q Consensus       368 Al-~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~L---~~~Gi~--------------t~iDl~~L~~la~~v~~  428 (452)
                      +| ..|+ |.|-+|+.+             .|.||+-.+.   +.+|+.              +.+|+   ..++..+++
T Consensus       227 ~LL~~GIGDTiRVSLt~-------------~P~~EV~va~~IL~slglr~~g~~IisCPgCgR~~~D~---~~la~~vee  290 (360)
T PRK00366        227 ALLQEGIGDTIRVSLTA-------------DPVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDV---IQELAEVEQ  290 (360)
T ss_pred             HHHHhcCCCeEEEeCCC-------------CCHHHHHHHHHHHHHcCCccCCCeEEECCCCCCCcccH---HHHHHHHHH
Confidence            32 4564 678888873             3577776543   334432              12333   334444444


Q ss_pred             H-hCCCCCCCcccccch
Q 012949          429 H-LGRPSGSKTAIALNR  444 (452)
Q Consensus       429 ~-~g~~~p~~~pi~G~~  444 (452)
                      . .+.+.|-+.++.|.-
T Consensus       291 ~~~~~~~PlkIAVmGC~  307 (360)
T PRK00366        291 RLEHIKMPLKVAVMGCV  307 (360)
T ss_pred             HhcCCCCCcEEEEeCCC
Confidence            4 488888887877763

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=90.27  E-value=5.5  Score=43.35  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      .++ .+.++.|.++|++.|++.......     ....+.++.+++. +++.+  ++-+.                     
T Consensus       240 ~~~-~~~~~~l~~ag~d~i~id~a~G~s-----~~~~~~i~~ik~~~~~~~v--~aG~V---------------------  290 (495)
T PTZ00314        240 PED-IERAAALIEAGVDVLVVDSSQGNS-----IYQIDMIKKLKSNYPHVDI--IAGNV---------------------  290 (495)
T ss_pred             HHH-HHHHHHHHHCCCCEEEEecCCCCc-----hHHHHHHHHHHhhCCCceE--EECCc---------------------
Confidence            344 899999999999999997531100     1122344445432 33332  22221                     


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                        .+.++++.++++|+|.|.+-... |--..+...++... .+..+.++.+.+++.|+++.         ++.+-.++.+
T Consensus       291 --~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~d  358 (495)
T PTZ00314        291 --VTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRP-QASAVYHVARYARERGVPCI---------ADGGIKNSGD  358 (495)
T ss_pred             --CCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCC-hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHH
Confidence              13468899999999999875421 10000111222222 23455677788888897764         2445445544


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHHH
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI  367 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaLa  367 (452)
                      +.+    +..+||+.+.+.-.            +..- .+.|...+   +-....-+|||...++.
T Consensus       359 i~k----Ala~GA~~Vm~G~~------------~a~~-~e~~~~~~~~~g~~~k~yrGm~s~~a~~  407 (495)
T PTZ00314        359 ICK----ALALGADCVMLGSL------------LAGT-EEAPGEYFFKDGVRLKVYRGMGSLEAML  407 (495)
T ss_pred             HHH----HHHcCCCEEEECch------------hccc-cccCCceeeeCCeEEEEEeccchHHHhh
Confidence            443    34489999988543            1111 12343211   23455578999766554

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=90.23  E-value=12  Score=39.14  Aligned_cols=143  Identities=13%  Similarity=0.034  Sum_probs=87.1

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCC-
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV-  296 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~-  296 (452)
                      +..+.|+++|.|.|.|-..-        |+..  .....|-|.++=.+.+.++++.+|+. |  +.|.+-++..-+.+. 
T Consensus       148 ~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~  227 (361)
T cd04747         148 RAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYT  227 (361)
T ss_pred             HHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccc
Confidence            35567778999998886432        2322  23346778898888889999998885 4  445544542100111 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-CCcHH---HHHHHHHHHHHhCCCccEEEEeCCCc-------------
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIG-VGTPG---TVVPMLEAVMAVVPVEKLAVHLHDTY-------------  358 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~---~v~~li~~l~~~~p~~~l~vH~Hnd~-------------  358 (452)
                       .+-.+++...++++.+.++|+|.|.+.-  | ...|.   .-..+.+.+++.++. ++....--+.             
T Consensus       228 ~~~g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~~-pv~~~G~i~~~~~~~~~~~~~~~  304 (361)
T cd04747         228 ARLADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTGL-PTITVGSVGLDGDFIGAFAGDEG  304 (361)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcCC-CEEEECCcccccccccccccccc
Confidence             1125778889999999999999887732  2 11221   123455667776653 5555443211             


Q ss_pred             --CcHHHHHHHHHHcC-CCEE
Q 012949          359 --GQSLPNILISLQMG-ISTV  376 (452)
Q Consensus       359 --GlA~ANaLaAl~aG-a~~V  376 (452)
                        -.....+..+++.| ||.|
T Consensus       305 ~~~~~~~~a~~~l~~g~~D~V  325 (361)
T cd04747         305 ASPASLDRLLERLERGEFDLV  325 (361)
T ss_pred             cccCCHHHHHHHHHCCCCCee
Confidence              12456777888877 6764

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins

Probab=90.22  E-value=11  Score=36.93  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=53.2

Q ss_pred             HHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHH
Q 012949          235 AAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD  314 (452)
Q Consensus       235 ~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~  314 (452)
                      +++--+ ..|.++.+..+.                +....++-+..+.++.+.    ..+|+.  .+.+.+.+.++.+.+
T Consensus       120 ~al~~~-~~vGVivP~~eQ----------------~~~~~~kW~~l~~~~~~a----~asPy~--~~~~~l~~Aa~~L~~  176 (221)
T PF07302_consen  120 AALVGG-HQVGVIVPLPEQ----------------IAQQAEKWQPLGNPVVVA----AASPYE--GDEEELAAAARELAE  176 (221)
T ss_pred             HHhcCC-CeEEEEecCHHH----------------HHHHHHHHHhcCCCeEEE----EeCCCC--CCHHHHHHHHHHHHh
Confidence            334344 889999987552                223334445566666532    235664  267899999999999


Q ss_pred             CCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949          315 MGCFEISLGDTIGVGTPGTVVPMLEA  340 (452)
Q Consensus       315 ~Gad~I~L~DT~G~~~P~~v~~li~~  340 (452)
                      .|+|.|.| |-+|+..  +.+++++.
T Consensus       177 ~gadlIvL-DCmGYt~--~~r~~~~~  199 (221)
T PF07302_consen  177 QGADLIVL-DCMGYTQ--EMRDIVQR  199 (221)
T ss_pred             cCCCEEEE-ECCCCCH--HHHHHHHH
Confidence            99999999 9999854  34444443

In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.

>TIGR02317 prpB methylisocitrate lyase

Probab=90.13  E-value=4  Score=41.33  Aligned_cols=106  Identities=12%  Similarity=0.187  Sum_probs=72.2

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CCc
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGT  330 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~  330 (452)
                      +.++.++.+.++.+.   ..++|.+-+-       .+--++..+.+.++.+.++|+..|.|-|.++           +..
T Consensus        57 t~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~  126 (285)
T TIGR02317        57 TLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVS  126 (285)
T ss_pred             CHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccC
Confidence            566777766555433   4677764443       2333578889999999999999999999873           346


Q ss_pred             HHHHHHHHHHHHHhCCCccEEEEeC------CCcCcHHHHHHHHHHcCCCEEe
Q 012949          331 PGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       331 P~~v~~li~~l~~~~p~~~l~vH~H------nd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +++....|++.++...+.++-+=.-      ..+--|+.-+.+..+||||.|=
T Consensus       127 ~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vf  179 (285)
T TIGR02317       127 REEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIF  179 (285)
T ss_pred             HHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence            6777777888877543323333222      2344677888888999999653

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=90.13  E-value=2.9  Score=43.25  Aligned_cols=77  Identities=17%  Similarity=0.187  Sum_probs=58.2

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCC-CcHHHHHHHHHHHHHhCCCccEEEEeC---------CCcCcHHHHHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLH---------DTYGQSLPNILIS  368 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH~H---------nd~GlA~ANaLaA  368 (452)
                      +.++|.+.+.++.+.+.|+.+|.|.+.... ...+.+.++++.+++++|.  +.+|+-         +-.|+-....+..
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~  155 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE  155 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence            358999999999999999999999743222 2336889999999999986  444432         3468877787776


Q ss_pred             H-HcCCCEEe
Q 012949          369 L-QMGISTVD  377 (452)
Q Consensus       369 l-~aGa~~VD  377 (452)
                      + +||++.+.
T Consensus       156 LkeAGld~~~  165 (351)
T TIGR03700       156 LKEAGLDSMP  165 (351)
T ss_pred             HHHcCCCcCC
Confidence            6 58998776

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>PRK13758 anaerobic sulfatase-maturase; Provisional

Probab=90.09  E-value=15  Score=37.93  Aligned_cols=168  Identities=14%  Similarity=0.127  Sum_probs=91.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhcc--CCce-eEEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLE--GARL-PVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~--~~~l-~~l~~~~~~~i~r~~~~~~~  217 (452)
                      .++.+...++++.+.+.+.....+.+...   .|-+..   ..++++.+++..  +..+ ..++.|.- +          
T Consensus        38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~-l----------  103 (370)
T PRK13758         38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGT-L----------  103 (370)
T ss_pred             CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCE-e----------
Confidence            47788888888776555444445554432   244432   235566665532  2222 12332221 0          


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                                ...+-++...+.++ .|.|.+-. .+.|............++++.+.++.+++.|+++.+.  +++    
T Consensus       104 ----------l~~~~~~~l~~~~~-~v~iSlDg~~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~--~~v----  166 (370)
T PRK13758        104 ----------IDESWAKFLSENKF-LVGLSMDGPKEIHNLNRKDCCGLDTFSKVERAAELFKKYKVEFNIL--CVV----  166 (370)
T ss_pred             ----------cCHHHHHHHHHcCc-eEEEeecCCHHHhccccCCCCCCccHHHHHHHHHHHHHhCCCceEE--EEe----
Confidence                      11234555666775 77776543 3333221110112356777788888888888876533  223    


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEc---CCcC--------CCcHHHHHHHHHHHHH
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLG---DTIG--------VGTPGTVVPMLEAVMA  343 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~---DT~G--------~~~P~~v~~li~~l~~  343 (452)
                       ++.+.+.+.++++.+.+.|++.+.+.   +..|        .++|.+..+++..+.+
T Consensus       167 -~~~n~~~l~~i~~~~~~~g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~  223 (370)
T PRK13758        167 -TSNTARHVNKIYKYFKEKDFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD  223 (370)
T ss_pred             -ccccccCHHHHHHHHHHcCCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence             23345567777888888999877552   2222        3577777776666554

>PRK06801 hypothetical protein; Provisional

Probab=90.09  E-value=3.3  Score=41.93  Aligned_cols=102  Identities=11%  Similarity=0.085  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcHHHHHHHHHHHHHhCC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.... .+..+..+..++..+.++.+
T Consensus         5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~   74 (286)
T PRK06801          5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD   74 (286)
T ss_pred             cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence            356778999999988752     31     23678888999999998876 45554433 33455778888888888876


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  383 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  383 (452)
                      . |+.+|.  |.|.-+.....|+++|++  ++|+|-..+
T Consensus        75 v-pV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l~~  110 (286)
T PRK06801         75 I-PVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTLEY  110 (286)
T ss_pred             C-CEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCCCH
Confidence            4 677766  557778899999999999  456665543

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=90.07  E-value=9.8  Score=40.38  Aligned_cols=147  Identities=16%  Similarity=0.170  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.++.++=++.|.+.|++.|-+....   .....+......++++.+..+++.   ++....|..             
T Consensus       152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~-------------  218 (418)
T PRK14336        152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKD-------------  218 (418)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhh-------------
Confidence            5788999999999999999988876321   111011111345566666554332   221111210             


Q ss_pred             cchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~  292 (452)
                                ...+-++...+.  +...+++.+ +.||.-++. .|+.  ...+.+.++++.+++.  |+.+.++++  +
T Consensus       219 ----------i~~ell~~l~~~~~~~~~l~lglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~pgi~i~~d~I--v  283 (418)
T PRK14336        219 ----------ISQKLIDAMAHLPKVCRSLSLPVQAGDDTILAA-MRRG--YTNQQYRELVERLKTAMPDISLQTDLI--V  283 (418)
T ss_pred             ----------cCHHHHHHHHhcCccCCceecCCCcCCHHHHHH-hCCC--CCHHHHHHHHHHHHhhCCCCEEEEEEE--E
Confidence                      012344555553  477777765 445544432 2322  2245556777888887  888877776  5


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       284 GfPGET---~edf~~tl~fi~~~~~~~~~  309 (418)
T PRK14336        284 GFPSET---EEQFNQSYKLMADIGYDAIH  309 (418)
T ss_pred             ECCCCC---HHHHHHHHHHHHhcCCCEEE
Confidence            667664   56777777777777776654

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=90.05  E-value=7.9  Score=41.25  Aligned_cols=147  Identities=14%  Similarity=0.133  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.+..++-++.|.+.|++.|.+...   ..++.... ....++++.+.+..+.   ++....|..             
T Consensus       174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~-------------  239 (437)
T PRK14331        174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRD-------------  239 (437)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCccc-------------
Confidence            468888888889998899998887521   11111110 1345566666544332   221111110             


Q ss_pred             cchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~  292 (452)
                                ...+-++...++  |...|++.+ +.|+.-++ .+|+.  ...+.+.++++.+|+.  |+.+.++++  +
T Consensus       240 ----------l~~ell~~~~~~~~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--v  304 (437)
T PRK14331        240 ----------LDEDIIKAMADIPQVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--V  304 (437)
T ss_pred             ----------CCHHHHHHHHcCCccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--E
Confidence                      122355666666  478888865 55654443 23432  2344555677888887  888877666  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+.+
T Consensus       305 G~PgET---~ed~~~tl~~l~~l~~~~i~~  331 (437)
T PRK14331        305 GFPTET---EEDFEETLDVLKKVEFEQVFS  331 (437)
T ss_pred             ECCCCC---HHHHHHHHHHHHhcCcceeee
Confidence            777764   577777777778888765443

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=90.05  E-value=5  Score=40.48  Aligned_cols=103  Identities=15%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCc-HHHHHHHHHHHHHhCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGT-PGTVVPMLEAVMAVVP  346 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~-P~~v~~li~~l~~~~p  346 (452)
                      +.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+...|--.-..  .+.. ...+..++..+.++++
T Consensus         4 ~~~~l~~A~~~~yav~A-----fn-----~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~   73 (282)
T TIGR01859         4 GKEILQKAKKEGYAVGA-----FN-----FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS   73 (282)
T ss_pred             HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence            45677899999987752     21     2367888889999999887755443222  2222 4567788888888876


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCC
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLG  384 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlG  384 (452)
                      .+|+.+|.  |-|.-+.....|+++|++  ++|.+-..+-
T Consensus        74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~  111 (282)
T TIGR01859        74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHLPFE  111 (282)
T ss_pred             CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCCCHH
Confidence            35888884  444567889999999998  4566655443

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=90.03  E-value=20  Score=35.53  Aligned_cols=153  Identities=14%  Similarity=0.138  Sum_probs=93.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHH----------hh-hcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFS----------KS-NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~----------~~-~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~  297 (452)
                      +-++...+.|+|.|-+-+|-||...          ++ +-|.+.++.+    +.++..|+.  .+++. .+++ + .|..
T Consensus        28 ~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv-~m~Y-~-Npi~  100 (256)
T TIGR00262        28 EIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG-LLTY-Y-NLIF  100 (256)
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE-EEEe-c-cHHh
Confidence            3566777899999999998888321          11 2344444444    344555543  55543 3333 2 2211


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                       .+   =+.++++.+.++|++.|.+.|-    .+++..++++.+++.-  ..+.+=+-.+.-..-...+++...|.-++=
T Consensus       101 -~~---G~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~g--l~~i~lv~P~T~~eri~~i~~~~~gfiy~v  170 (256)
T TIGR00262       101 -RK---GVEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHG--VKPIFLVAPNADDERLKQIAEKSQGFVYLV  170 (256)
T ss_pred             -hh---hHHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCC--CcEEEEECCCCCHHHHHHHHHhCCCCEEEE
Confidence             11   2346778889999999999995    5678888888888752  234444444444455556666666666654


Q ss_pred             ecccCCCCCCCCCCCC--CcccHHHHHHHHHc
Q 012949          378 CSVAGLGGCPYAKGAS--GNVATEDVVYMLSG  407 (452)
Q Consensus       378 ~Sv~GlGecP~a~gra--GNaalE~vv~~L~~  407 (452)
                      + +.|..+      ..  =+.++.+.+..++.
T Consensus       171 s-~~G~TG------~~~~~~~~~~~~i~~lr~  195 (256)
T TIGR00262       171 S-RAGVTG------ARNRAASALNELVKRLKA  195 (256)
T ss_pred             E-CCCCCC------CcccCChhHHHHHHHHHh
Confidence            4 457665      32  23567777777775

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=89.98  E-value=3.3  Score=44.47  Aligned_cols=162  Identities=17%  Similarity=0.190  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      +.-.+-+..|.++|++.|++-....        +.+.+++.++.+..  ..+.+++-+.                     
T Consensus       223 ~~~~~r~~~L~~aG~d~I~vd~a~g--------~~~~~~~~i~~i~~~~~~~~vi~G~v---------------------  273 (450)
T TIGR01302       223 EFDKERAEALVKAGVDVIVIDSSHG--------HSIYVIDSIKEIKKTYPDLDIIAGNV---------------------  273 (450)
T ss_pred             hhHHHHHHHHHHhCCCEEEEECCCC--------cHhHHHHHHHHHHHhCCCCCEEEEeC---------------------
Confidence            4456677799999999999975321        22233444443211  1233333121                     


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                        .+.++.+.++++|+|.|.+..+.- =-..+...++... .+..+.++.+++++.+++|.         ++.+-.++.+
T Consensus       274 --~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvi---------adGGi~~~~d  341 (450)
T TIGR01302       274 --ATAEQAKALIDAGADGLRVGIGPGSICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVI---------ADGGIRYSGD  341 (450)
T ss_pred             --CCHHHHHHHHHhCCCEEEECCCCCcCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEE---------EeCCCCCHHH
Confidence              134688999999999998864211 0001111233333 24555677788888888764         1344444544


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE---EEEeCCCcCcHHHHHHH
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL---AVHLHDTYGQSLPNILI  367 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l---~vH~Hnd~GlA~ANaLa  367 (452)
                      +.+    +.++||+.+.+.-            ++..- ++.|...+   +-+.-.-+||+...++.
T Consensus       342 i~k----Ala~GA~~V~~G~------------~~a~~-~e~pg~~~~~~g~~~k~yrgm~s~~a~~  390 (450)
T TIGR01302       342 IVK----ALAAGADAVMLGS------------LLAGT-TESPGEYEIINGRRYKQYRGMGSLGAMT  390 (450)
T ss_pred             HHH----HHHcCCCEEEECc------------hhhcC-CcCCCceEEECCEEEEEEeccchHHHHh
Confidence            443    3457999998865            33332 33565322   23444568999766553

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=89.93  E-value=9.3  Score=43.76  Aligned_cols=139  Identities=15%  Similarity=0.139  Sum_probs=85.8

Q ss_pred             HHhHHHHHHcCCCEEEEEec--------CChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCC
Q 012949          230 LQGFEAAIAAGAKEVAIFAS--------ASEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPV  296 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s--------~Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~  296 (452)
                      .+..++|+++|.|.|.|-..        .|+..+  ...+|-|.|+=++.+.++++.+|+. |  +.|.+-|+.. + ..
T Consensus       554 ~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~-~-~~  631 (765)
T PRK08255        554 VAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH-D-WV  631 (765)
T ss_pred             HHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc-c-cc
Confidence            34556677899999988654        255432  3346778888888888888888884 3  4555445421 0 01


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--------HHHHHHHHHHHHhCCCccEEEE-eCCCcCcHHHHHHH
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--------GTVVPMLEAVMAVVPVEKLAVH-LHDTYGQSLPNILI  367 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--------~~v~~li~~l~~~~p~~~l~vH-~Hnd~GlA~ANaLa  367 (452)
                      .+-.+++...++++.+.++|+|.|.+.  .|...+        .....+.+.+|+.+.. +|..- -.++    ...+..
T Consensus       632 ~~g~~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~i~~----~~~a~~  704 (765)
T PRK08255        632 EGGNTPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAGI-ATIAVGAISE----ADHVNS  704 (765)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcCC-EEEEeCCCCC----HHHHHH
Confidence            223567888899999999999999884  221111        1123456677777653 44332 2222    355677


Q ss_pred             HHHcC-CCEEe
Q 012949          368 SLQMG-ISTVD  377 (452)
Q Consensus       368 Al~aG-a~~VD  377 (452)
                      +++.| +|.|-
T Consensus       705 ~l~~g~~D~v~  715 (765)
T PRK08255        705 IIAAGRADLCA  715 (765)
T ss_pred             HHHcCCcceee
Confidence            77766 66553

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=89.90  E-value=6.5  Score=35.99  Aligned_cols=119  Identities=11%  Similarity=0.024  Sum_probs=65.9

Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCC------HH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIP------PS  303 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d------~e  303 (452)
                      ++.+.++|.+.|.+.........         +.-..+.++.+.+++.|+++.............   ....      .+
T Consensus         1 l~~~~~~G~~~vE~~~~~~~~~~---------~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   71 (213)
T PF01261_consen    1 LEAAAEAGFDGVELRFDDGQPWD---------EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE   71 (213)
T ss_dssp             HHHHHHTTHSEEEEEHHHHSHHT---------HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred             ChHHHHcCCCEEEEecCCCcccc---------cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence            45678899999988764222110         002456677788899999865322222211111   1122      56


Q ss_pred             HHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCC-----CccEEEEeCCCcCc
Q 012949          304 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVP-----VEKLAVHLHDTYGQ  360 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p-----~~~l~vH~Hnd~Gl  360 (452)
                      .+.+.++.+..+|++.+.+.     .............+++.+++..+     ++.|.++.|.....
T Consensus        72 ~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~  138 (213)
T PF01261_consen   72 YLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFS  138 (213)
T ss_dssp             HHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSS
T ss_pred             HHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccc
Confidence            77778888888899988876     22233333444444444443221     34566666665543

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=89.87  E-value=9.1  Score=38.91  Aligned_cols=100  Identities=20%  Similarity=0.168  Sum_probs=64.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++..++.|++.|-+.-+..|.+     ..|.+|-.+.++.+++.++ -.++|.+.+.         ..+.+...++++.
T Consensus        34 lv~~li~~Gv~Gi~v~GstGE~~-----~Lt~eEr~~v~~~~~~~~~-grvpvi~Gv~---------~~~t~~ai~~a~~   98 (309)
T cd00952          34 LVERLIAAGVDGILTMGTFGECA-----TLTWEEKQAFVATVVETVA-GRVPVFVGAT---------TLNTRDTIARTRA   98 (309)
T ss_pred             HHHHHHHcCCCEEEECcccccch-----hCCHHHHHHHHHHHHHHhC-CCCCEEEEec---------cCCHHHHHHHHHH
Confidence            56777788999888877777753     3566776666656665543 2344442222         2345777788888


Q ss_pred             HHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+.+.=. .-..+++.+.+.++.+.+..|
T Consensus        99 A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~  134 (309)
T cd00952          99 LLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVP  134 (309)
T ss_pred             HHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCC
Confidence            88888886655433 333456777777777777653

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.86  E-value=12  Score=39.69  Aligned_cols=150  Identities=14%  Similarity=0.105  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ..+.++.++=++.|.+.|++.|.+...   ..........+..++++.+..+.+.....+. ..            .+..
T Consensus       168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~-~~------------~p~~  234 (434)
T PRK14330        168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFL-TS------------YPTD  234 (434)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEe-cC------------Chhh
Confidence            467888888888898999998876421   1000011011334455555444443211111 00            0010


Q ss_pred             hhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCC
Q 012949          221 VISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCP  295 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p  295 (452)
                             ...+-++.+.++|  ...+++.+ +.||--++ ..|+.  ...+.+.++++.+++.  |+.+.++++  +|.|
T Consensus       235 -------~~~ell~~l~~~~~~~~~l~iglQSgsd~vLk-~M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfP  302 (434)
T PRK14330        235 -------FSDELIEVIANSPKVAKSIHLPVQSGSNRILK-LMNRR--YTREEYLELIEKIRSKVPDASISSDII--VGFP  302 (434)
T ss_pred             -------cCHHHHHHHhcCCcccCceecCcCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECC
Confidence                   1223556666666  56777766 45564433 33443  2345666778888886  666776665  6778


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      .++   .+.+.+.++.+.+.+.+.+.
T Consensus       303 gET---~edf~~tl~fi~~~~~~~~~  325 (434)
T PRK14330        303 TET---EEDFMETVDLVEKAQFERLN  325 (434)
T ss_pred             CCC---HHHHHHHHHHHHhcCCCEEe
Confidence            764   57777788888888877665

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=89.85  E-value=7.5  Score=37.03  Aligned_cols=137  Identities=15%  Similarity=0.102  Sum_probs=76.1

Q ss_pred             hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ..+.+.++|++.|.|-.+. +....+...|.+.+.-.+.+.++++..++. ++.+.+-+...+   .    +.+...+++
T Consensus        72 aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~---~----~~~~~~~~~  144 (231)
T cd02801          72 AAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW---D----DEEETLELA  144 (231)
T ss_pred             HHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc---C----CchHHHHHH
Confidence            5567778899988875432 122223335555555566666777777653 445543333211   1    114788899


Q ss_pred             HHHHHCCcCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEeec
Q 012949          310 KELHDMGCFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD~S  379 (452)
                      +.+.++|++.|.+-+-...  ..+..-.+.++.+++... ++|..-.  +.. ....+..+++. ||+.|-.+
T Consensus       145 ~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~G--gi~-~~~d~~~~l~~~gad~V~ig  213 (231)
T cd02801         145 KALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIANG--DIF-SLEDALRCLEQTGVDGVMIG  213 (231)
T ss_pred             HHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEeC--CCC-CHHHHHHHHHhcCCCEEEEc
Confidence            9999999999988654321  111123455666766433 3444422  111 23455566666 67766443

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=89.84  E-value=1.8  Score=40.89  Aligned_cols=99  Identities=12%  Similarity=0.061  Sum_probs=63.1

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE--EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA--VHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~--vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ..+++...++++.+ +-|++.|-+  +.-..+|.. .+.|+.+++.+|+..+.  +|.+ |-|  .-.+..+.++||+.|
T Consensus         8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i   80 (206)
T TIGR03128         8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV   80 (206)
T ss_pred             CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence            45788999999999 778887776  222333333 57788999888754444  4555 333  225677899999988


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVD  415 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iD  415 (452)
                      -.-.    +       +++..+++++...+++|+...++
T Consensus        81 ~vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~  108 (206)
T TIGR03128        81 TVLG----V-------ADDATIKGAVKAAKKHGKEVQVD  108 (206)
T ss_pred             EEec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence            5332    1       12334566777777666665533

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=89.83  E-value=11  Score=39.12  Aligned_cols=173  Identities=13%  Similarity=0.089  Sum_probs=106.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC--CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV--SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~--s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.+.-++-.+...+.-=+-+|+=...  -|-..|-+   .++++.++.++++.+..+-.+.- +              
T Consensus       140 ~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~-~--------------  201 (414)
T COG2100         140 VVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGV-L--------------  201 (414)
T ss_pred             EecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCce-e--------------
Confidence            4778888888888888777777875432  23233433   56788888877766544432221 0              


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                            ...+-+++..++|+|+|.+.+.+=|...-..+---....++.+.++++++.+.|+.|-  |+-++    ---.+
T Consensus       202 ------L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvl--IaPv~----lPG~N  269 (414)
T COG2100         202 ------LSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVL--IAPVW----LPGVN  269 (414)
T ss_pred             ------ccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEE--Eeeee----cCCcC
Confidence                  1235778888999999999986655433333322234567888889999999999875  33222    11245


Q ss_pred             HHHHHHHHHHHHHCCcC--------EEEEcCCcCC----CcH---HHHHHHHHHHHHhCC
Q 012949          302 PSKVAYVAKELHDMGCF--------EISLGDTIGV----GTP---GTVVPMLEAVMAVVP  346 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad--------~I~L~DT~G~----~~P---~~v~~li~~l~~~~p  346 (452)
                      .+.+.++++.+.+.||-        .-++.=-.|-    ..|   .+++..++.+-+++.
T Consensus       270 D~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLrelEketg  329 (414)
T COG2100         270 DDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLRELEKETG  329 (414)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHHHHHHHhC
Confidence            56777788888877651        2333333332    222   456666666666654

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=89.80  E-value=17  Score=36.69  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE---c-CC---cC-----CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL---G-DT---IG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L---~-DT---~G-----~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      .+++.+.++++.+.++|+|.|.|   | .+   -|     ...|+.+.++++.+++... +||.+-..-+.---..-+.+
T Consensus       110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~  188 (299)
T cd02940         110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA  188 (299)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence            46789999999999899997777   2 22   11     1469999999999998764 46777766544333344455


Q ss_pred             HHHcCCCEEe
Q 012949          368 SLQMGISTVD  377 (452)
Q Consensus       368 Al~aGa~~VD  377 (452)
                      +.++||+.|-
T Consensus       189 ~~~~Gadgi~  198 (299)
T cd02940         189 AKEGGADGVS  198 (299)
T ss_pred             HHHcCCCEEE
Confidence            6789999664

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=89.76  E-value=2.7  Score=45.68  Aligned_cols=107  Identities=13%  Similarity=0.139  Sum_probs=71.7

Q ss_pred             HHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++.+.++|+.+|.|-... ++-.+ ..+|+.  ...+.+.++++.+|+.|+ .+...++  +|.|..   +.+.+.+
T Consensus       269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vL-k~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~  340 (488)
T PRK08207        269 EEKLEVLKKYGVDRISINPQTMNDETL-KAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKH  340 (488)
T ss_pred             HHHHHHHHhcCCCeEEEcCCcCCHHHH-HHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHH
Confidence            467888999999999987744 44333 334442  334555677899999999 5666665  677765   4688888


Q ss_pred             HHHHHHHCCcCEEEEcCC--------------cCCCcHHHHHHHHHHHHHh
Q 012949          308 VAKELHDMGCFEISLGDT--------------IGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT--------------~G~~~P~~v~~li~~l~~~  344 (452)
                      .++.+.+.+++.|.+--.              .....++...+++....+.
T Consensus       341 tl~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~  391 (488)
T PRK08207        341 TLEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW  391 (488)
T ss_pred             HHHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence            899999999987775422              2333455555555555544

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=89.76  E-value=22  Score=35.12  Aligned_cols=235  Identities=15%  Similarity=0.098  Sum_probs=129.6

Q ss_pred             cEEEeCCccccCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeE
Q 012949          127 VKIVEVGPRDGLQNEKN---TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPV  199 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~---~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~  199 (452)
                      ++|-+.++-.|.-..-.   .-+.++.++-++.+.+.|+|.||+-...-..    +.+.+.+.+.++.+    .+..+-+
T Consensus         4 ~~~~~~~~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~----~~~~~~~~~~~~~l~~~~~~~PiI~   79 (253)
T PRK02412          4 VTVKNLVIGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK----ISDVESVLAAAPAIREKFAGKPLLF   79 (253)
T ss_pred             eEEeceEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc----cCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            44555555333221111   2345666666777788899999997542111    12233444433322    2222222


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      -++...+   .  |-....++       .+.+-++.+++.| ++.|.|-....+               +.+.++++.++
T Consensus        80 T~R~~~e---G--G~~~~~~~-------~~~~ll~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~  132 (253)
T PRK02412         80 TFRTAKE---G--GEIALSDE-------EYLALIKAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAH  132 (253)
T ss_pred             EECChhh---C--CCCCCCHH-------HHHHHHHHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHH
Confidence            2221110   0  00000000       1223567788888 899998764432               33456778888


Q ss_pred             hCCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh---CCCccEEEEe
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPVEKLAVHL  354 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~-d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~---~p~~~l~vH~  354 (452)
                      +.|.++.  +|+-    +...+ +.+.+.++.+.+.+.|||.+.|+=+  .-++.++.+++....+.   .+..|+-.=+
T Consensus       133 ~~~~kvI--~S~H----~f~~tP~~~~l~~~~~~~~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~  204 (253)
T PRK02412        133 EHGVKVV--LSYH----DFEKTPPKEEIVERLRKMESLGADIVKIAVM--PQSEQDVLTLLNATREMKELYADQPLITMS  204 (253)
T ss_pred             HcCCEEE--EeeC----CCCCCcCHHHHHHHHHHHHHhCCCEEEEEec--CCCHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            8888876  3431    21222 3367888999999999999888654  33567777777665432   2333443222


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      =-.+|  ...=+.+-..|...+-+++.   + |-   +.|+.+++++...++.++
T Consensus       205 MG~~G--~~SRil~~~~GS~~ty~~~~---~-~s---APGQ~~~~el~~i~~~l~  250 (253)
T PRK02412        205 MGKLG--RISRLAGEVFGSSWTFASLD---K-AS---APGQISVEDLRRILEILH  250 (253)
T ss_pred             CCCCc--hHHHcchhhhCCcceecCCC---C-CC---CCCCCCHHHHHHHHHHhc
Confidence            22222  23456666777776666654   3 23   456999999998888654

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=89.74  E-value=8.3  Score=38.19  Aligned_cols=107  Identities=19%  Similarity=0.149  Sum_probs=74.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     ..|.+|-.+.++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        22 ~~i~~l~~~Gv~gi~~~GstGE~~-----~ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~   86 (281)
T cd00408          22 RLVEFLIEAGVDGLVVLGTTGEAP-----TLTDEERKEVIEAVVEAVAG-RVPVIAGV---------GANSTREAIELAR   86 (281)
T ss_pred             HHHHHHHHcCCCEEEECCCCcccc-----cCCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCccHHHHHHHHH
Confidence            367788889999999988888864     45677777666666666542 34443222         2335678889999


Q ss_pred             HHHHCCcCEEEEcCCcC-CCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          311 ELHDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G-~~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      .+.++|+|.|.+.=..- ..+++.+.+.++.+.+.. +.|+-++
T Consensus        87 ~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~iY  129 (281)
T cd00408          87 HAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVILY  129 (281)
T ss_pred             HHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEEE
Confidence            99999999777754433 246788888888888864 3466654

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.74  E-value=12  Score=40.06  Aligned_cols=148  Identities=15%  Similarity=0.145  Sum_probs=84.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc----cccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV----PQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~----p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~  216 (452)
                      ..+.+..++-++.|.+.|++.|.+.......+.    +......++++.+..+++.   ++..+-|..            
T Consensus       176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~------------  243 (446)
T PRK14337        176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKD------------  243 (446)
T ss_pred             eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCccc------------
Confidence            468888898899999999998888532110000    0001234555555544332   221111210            


Q ss_pred             ccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEee
Q 012949          217 CHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCV  291 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~  291 (452)
                                 ...+-++...+.  +...+++.+ +.|+.-++. .|+.  ...+.+.++++.+++.  |+.+.++++  
T Consensus       244 -----------i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I--  307 (446)
T PRK14337        244 -----------IAPEVIEAFGELPNLCPRLHLPLQSGSDRILKA-MGRK--YDMARYLDIVTDLRAARPDIALTTDLI--  307 (446)
T ss_pred             -----------CCHHHHHHHHhCCcccCeEEECCCCCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--
Confidence                       112345555553  577888876 555544443 4442  2234555677777776  566666665  


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       292 ~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      +|.|.++   .+.+.+.++.+.+.+.+.+.+
T Consensus       308 vG~PgET---~ed~~~tl~~l~~~~~~~~~~  335 (446)
T PRK14337        308 VGFPGET---EEDFEQTLEAMRTVGFASSFS  335 (446)
T ss_pred             EECCCCC---HHHHHHHHHHHHhcCCCeeEE
Confidence            6778775   577777888888888775554

>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2

Probab=89.70  E-value=9.7  Score=38.14  Aligned_cols=152  Identities=18%  Similarity=0.242  Sum_probs=81.0

Q ss_pred             HHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ..++.++++|+|.|-||-..      .+.-.|  -+.++++...+.+. ++.-+.++-.+.     +..|+...+..++.
T Consensus        27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~--vtld~mi~h~~aV~Rga~~~~vv~DmP-----f~sy~~s~e~av~n   99 (261)
T PF02548_consen   27 PSARIADEAGVDIILVGDSLGMVVLGYDSTLP--VTLDEMIYHTKAVRRGAPNAFVVADMP-----FGSYQASPEQAVRN   99 (261)
T ss_dssp             HHHHHHHHTT-SEEEE-TTHHHHTT--SSSTT----HHHHHHHHHHHHHH-TSSEEEEE-------TTSSTSSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCCcHHHheeCCCCCcC--cCHHHHHHHHHHHHhcCCCceEEecCC-----cccccCCHHHHHHH
Confidence            56889999999999999321      111011  13455555444321 111111222222     23343333333321


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e-cCCCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V-GCPVE  297 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~-g~p~~  297 (452)
                             ..+...++|++-|.+--..                  ...+.|+..-+.|++|.+.|-..      + |.-.-
T Consensus       100 -------A~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~q  154 (261)
T PF02548_consen  100 -------AGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQ  154 (261)
T ss_dssp             -------HHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--C
T ss_pred             -------HHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCcEEEEecCchhheeccCCceEE
Confidence                   3344455999999987542                  12356677778899999888542      1 11122


Q ss_pred             CCC--CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949          298 GAI--PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA  340 (452)
Q Consensus       298 ~r~--d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~  340 (452)
                      ++.  +...+.+-++++.++||-.|.|-     +.|.++.+.|..
T Consensus       155 Gk~~~~a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~  194 (261)
T PF02548_consen  155 GKTAEEAEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITE  194 (261)
T ss_dssp             STSHHHHHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHH
Confidence            333  34567788899999999999995     479888887764

1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.

>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities

Probab=89.69  E-value=6.9  Score=40.99  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC------CCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL------SIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~------G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      -++.-...|.|.+..++-..+.      ..+.+++-+.+.+..+++++.      .-. +  .  .|| +..+-.+++.-
T Consensus       125 ~i~~q~~ig~DI~m~LD~~~~~------~~~~~~~~~av~rT~rw~~r~~~~~~~~~~-~--~--lfg-iVqGg~~~dLR  192 (367)
T TIGR00449       125 IMEIQYALGSDIIMALDECTPP------PADYDYAEESLERTLRWAEESLEYHKRRNE-N--A--LFG-IVQGGTYPDLR  192 (367)
T ss_pred             HHHHHHHHCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHhccCC-c--e--EEE-EecCCCCHHHH
Confidence            3444455688887777543321      233444444444444444321      101 1  1  121 23444445444


Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccC
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .+-++.+.+.+.+.+.|.--...-.++++.++|..+++.+|.. .-.|.   +|.+. .+.+.++..|+|.+|.+..=
T Consensus       193 ~~sa~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~pt  266 (367)
T TIGR00449       193 RQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKD-KPRYL---MGVGTPELLANAVSLGIDMFDCVAPT  266 (367)
T ss_pred             HHHHHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCcc-cceEe---cCCCCHHHHHHHHHcCCCEEeeCCcc
Confidence            4558888899999988877422234688999999999888752 22344   56654 78999999999999988753

Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.69  E-value=20  Score=34.56  Aligned_cols=200  Identities=15%  Similarity=0.128  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ..-.++++.+.+.|++.+-+--.. +.....  .+.+.+.+..+. .+..+.+ --+.+                     
T Consensus        32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~--~~~~~i~~i~~~-~~~~l~v-~GGi~---------------------   86 (241)
T PRK13585         32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGER--KNAEAIEKIIEA-VGVPVQL-GGGIR---------------------   86 (241)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEechhhhcCCc--ccHHHHHHHHHH-cCCcEEE-cCCcC---------------------
Confidence            456788999999999988774322 111000  122222222222 2333322 11111                     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCC--C-CC-C
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVE--G-AI-P  301 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~--~-r~-d  301 (452)
                        ..++++.++++|++.|.+-...-+             ..+.+.+   .++..|. .+.+.+..- +.+..  + .. +
T Consensus        87 --~~~~~~~~~~~Ga~~v~iGs~~~~-------------~~~~~~~---i~~~~g~~~i~~sid~~-~~~v~~~g~~~~~  147 (241)
T PRK13585         87 --SAEDAASLLDLGVDRVILGTAAVE-------------NPEIVRE---LSEEFGSERVMVSLDAK-DGEVVIKGWTEKT  147 (241)
T ss_pred             --CHHHHHHHHHcCCCEEEEChHHhh-------------ChHHHHH---HHHHhCCCcEEEEEEee-CCEEEECCCcccC
Confidence              235889999999999887542210             1122222   2333332 233333311 00000  0 01 1


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ...+.++++.+.++|++.|.+-|+  .|...+. -.++++.+++.++ +|+-.-..=.   ...+.....++||+.|=+.
T Consensus       148 ~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~i~~~~~-iPvia~GGI~---~~~di~~~~~~Ga~gv~vg  222 (241)
T PRK13585        148 GYTPVEAAKRFEELGAGSILFTNVDVEGLLEGV-NTEPVKELVDSVD-IPVIASGGVT---TLDDLRALKEAGAAGVVVG  222 (241)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEEeecCCCCcCCC-CHHHHHHHHHhCC-CCEEEeCCCC---CHHHHHHHHHcCCCEEEEE
Confidence            124567788888999999999776  5555443 2456777777764 3565544322   1345556677899965443


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYML  405 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L  405 (452)
                      -.-+         .+.-.+++++..+
T Consensus       223 sa~~---------~~~~~~~~~~~~~  239 (241)
T PRK13585        223 SALY---------KGKFTLEEAIEAV  239 (241)
T ss_pred             HHHh---------cCCcCHHHHHHHh
Confidence            3222         2344567666554

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.68  E-value=13  Score=39.91  Aligned_cols=149  Identities=10%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcc--cccCCHHHHHHHHHh----ccCCceeEEe-cchhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWV--PQLADARDVMEAVRD----LEGARLPVLT-PNLKVILQRSIL  213 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~--p~~~D~e~v~~~i~~----~~~~~l~~l~-~~~~~~i~r~~~  213 (452)
                      ..+.+..++-++.|.+.|++.|.+...   .....-  .......++++.+..    ..+.....+. ....        
T Consensus       180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~--------  251 (455)
T PRK14335        180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPK--------  251 (455)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcc--------
Confidence            468899999999999999998866421   110000  001133455555521    1222221111 0000        


Q ss_pred             hhhccchhhhhhhhccHHhHHHHHH--cCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEE
Q 012949          214 FQQCHASVISSNLWVYLQGFEAAIA--AGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYV  288 (452)
Q Consensus       214 ~~~~~~~~i~~~~~~~~~~ie~a~~--~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l  288 (452)
                             .      ...+-++...+  .|...+++.+ +.|+.-++. .|+.  ...+.+.++++.+++.  |+.+.+.+
T Consensus       252 -------~------i~~ell~~m~~~~~gc~~l~iglQSgsd~vLk~-m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~  315 (455)
T PRK14335        252 -------D------LSDDLIATIAQESRLCRLVHLPVQHGSNGVLKR-MNRS--YTREHYLSLVGKLKASIPNVALSTDI  315 (455)
T ss_pred             -------c------CCHHHHHHHHhCCCCCCeEEEccCcCCHHHHHH-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence                   0      11235555555  4789999987 556654443 4442  2345666788888888  88877777


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      +  +|.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       316 I--vGfPgET---~edf~~Tl~~i~~l~~~~~~  343 (455)
T PRK14335        316 L--IGFPGET---EEDFEQTLDLMREVEFDSAF  343 (455)
T ss_pred             E--EeCCCCC---HHHHHHHHHHHHhcCCCeEE
Confidence            6  6778764   56777777777777776554

>PRK08444 hypothetical protein; Provisional

Probab=89.66  E-value=1.3  Score=46.15  Aligned_cols=74  Identities=12%  Similarity=0.267  Sum_probs=58.1

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCC-----------CcCcHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHD-----------TYGQSLPN  364 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hn-----------d~GlA~AN  364 (452)
                      ..++|.+.+.++.+.+.|+.+|.|.  .|.-   ..+.+.++++.+++.+|.    +|.|-           ..|+.+.-
T Consensus        79 ~ls~eeI~~~a~~a~~~G~~ei~iv--~G~~p~~~~e~y~e~ir~Ik~~~p~----i~i~a~s~~Ei~~~a~~~g~~~~e  152 (353)
T PRK08444         79 TMSHEEILEIVKNSVKRGIKEVHIV--SAHNPNYGYEWYLEIFKKIKEAYPN----LHVKAMTAAEVDFLSRKFGKSYEE  152 (353)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEe--ccCCCCCCHHHHHHHHHHHHHHCCC----ceEeeCCHHHHHHHHHHcCCCHHH
Confidence            4688999999999999999999998  3321   236788999999999986    45555           78899877


Q ss_pred             HHHHH-HcCCCEEee
Q 012949          365 ILISL-QMGISTVDC  378 (452)
Q Consensus       365 aLaAl-~aGa~~VD~  378 (452)
                      .+..+ +||++.+..
T Consensus       153 ~l~~LkeAGl~~~~g  167 (353)
T PRK08444        153 VLEDMLEYGVDSMPG  167 (353)
T ss_pred             HHHHHHHhCcccCCC
Confidence            77777 589886653

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=89.49  E-value=2.9  Score=45.32  Aligned_cols=69  Identities=13%  Similarity=0.131  Sum_probs=54.6

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+.++.+.++|++.|.+-++-|.  +..+.+.++.+++.+|+.+|.+    -.++-...+..++++||+.|++++
T Consensus       230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~  298 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI  298 (486)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence            67888899999998866434344  5778899999999998777777    445566788999999999999644

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=89.45  E-value=1.4  Score=43.40  Aligned_cols=95  Identities=19%  Similarity=0.294  Sum_probs=60.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~-s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++.|++.|++.|-+.+..   +.. .++. ..++.++++..++++|+++|+.|.+          ..-.+.+.+..++
T Consensus       135 ~qi~~A~~~GAd~VELhTG~---YA~-a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----------GHgLny~Nv~~i~  200 (237)
T TIGR00559       135 DQISAAAEVGADRIEIHTGP---YAN-AYNKKEMAEELQRIVKASVHAHSLGLKVNA----------GHGLNYHNVKYFA  200 (237)
T ss_pred             HHHHHHHHhCcCEEEEechh---hhc-CCCchhHHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHhHHHHH
Confidence            38899999999999998742   111 1222 2245599999999999999999862          2224455555554


Q ss_pred             HHHHHCC-cCEEEE-----cCCcCCCcHHHHHHHHHHHH
Q 012949          310 KELHDMG-CFEISL-----GDTIGVGTPGTVVPMLEAVM  342 (452)
Q Consensus       310 ~~l~~~G-ad~I~L-----~DT~G~~~P~~v~~li~~l~  342 (452)
                      +.   -+ ...++|     ++.+=++.+..|+++.+.++
T Consensus       201 ~~---~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~  236 (237)
T TIGR00559       201 EI---LPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK  236 (237)
T ss_pred             hC---CCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            32   23 566665     44555556666666655543

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=89.41  E-value=5.2  Score=41.30  Aligned_cols=71  Identities=14%  Similarity=0.171  Sum_probs=50.3

Q ss_pred             HHHHHHHHHCCc--CEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          306 AYVAKELHDMGC--FEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       306 ~~~a~~l~~~Ga--d~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .+-++.+.++|+  |.|.| |++- ..-..+.++|+.+++.+|+.+|-.=-   -+ -...+..++++||+.|.++..|
T Consensus        99 ~~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~---V~-t~e~a~~l~~aGad~i~vg~~~  171 (326)
T PRK05458         99 YDFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGN---VG-TPEAVRELENAGADATKVGIGP  171 (326)
T ss_pred             HHHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEe---cC-CHHHHHHHHHcCcCEEEECCCC
Confidence            356677888855  98888 6554 45578899999999999975544310   11 3456788889999998766544

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=89.40  E-value=4.5  Score=40.94  Aligned_cols=101  Identities=9%  Similarity=0.137  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      ++++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.-. .-+.....+..+++.+.++.. 
T Consensus         6 ~k~ll~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~-   74 (283)
T PRK07998          6 GRILLDRIQEKHVLAGA-----FN-----TTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMD-   74 (283)
T ss_pred             HHHHHHHHHHCCCEEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCC-
Confidence            45777899999987642     31     23578888899999988876 4444322 122344667778888887775 


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  383 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  383 (452)
                      +|+.+|.  |.|.-+.....|+++|.+  ++|+|-..+
T Consensus        75 vPV~lHL--DH~~~~e~i~~Ai~~GftSVM~DgS~l~~  110 (283)
T PRK07998         75 VPVSLHL--DHGKTFEDVKQAVRAGFTSVMIDGAALPF  110 (283)
T ss_pred             CCEEEEC--cCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence            3677655  667778899999999998  678886644

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=89.39  E-value=6.3  Score=39.80  Aligned_cols=87  Identities=14%  Similarity=0.179  Sum_probs=50.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++.+.+.|++.|.+=++.-....+...|....+..+.+.++++.+|+. .++|.+-+.     |     +.+.+.++++
T Consensus       118 ~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~-----~~~~~~~~a~  187 (299)
T cd02940         118 LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P-----NITDIREIAR  187 (299)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C-----CchhHHHHHH
Confidence            3445555788877764432221111222222222334555666666653 566653332     2     2346788999


Q ss_pred             HHHHCCcCEEEEcCCcCC
Q 012949          311 ELHDMGCFEISLGDTIGV  328 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~  328 (452)
                      .+.++|++.|.+.+|...
T Consensus       188 ~~~~~Gadgi~~~Nt~~~  205 (299)
T cd02940         188 AAKEGGADGVSAINTVNS  205 (299)
T ss_pred             HHHHcCCCEEEEeccccc
Confidence            999999999998777643

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=89.35  E-value=29  Score=35.98  Aligned_cols=232  Identities=22%  Similarity=0.244  Sum_probs=125.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      -+.+.-++=++.|.++|.+.+-+..       |.+.+++ -+..+++-.++.+.+   .    |+    |.         
T Consensus        31 ~Dv~atv~QI~~L~~aGceiVRvav-------p~~~~A~-al~~I~~~~~iPlVA---D----IH----Fd---------   82 (346)
T TIGR00612        31 IDIDSTVAQIRALEEAGCDIVRVTV-------PDRESAA-AFEAIKEGTNVPLVA---D----IH----FD---------   82 (346)
T ss_pred             hhHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHH-hHHHHHhCCCCCEEE---e----eC----CC---------
Confidence            4556667778899999999999965       4333332 334444322222221   1    11    00         


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------C
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------G  298 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------~  298 (452)
                           ..-.-.+++.|++.+||--.        |++.     -++++++++.||++|+.++.-+-  .|+-..      +
T Consensus        83 -----~~lAl~a~~~g~dkiRINPG--------Nig~-----~e~v~~vv~~ak~~~ipIRIGVN--~GSL~~~~~~kyg  142 (346)
T TIGR00612        83 -----YRLAALAMAKGVAKVRINPG--------NIGF-----RERVRDVVEKARDHGKAMRIGVN--HGSLERRLLEKYG  142 (346)
T ss_pred             -----cHHHHHHHHhccCeEEECCC--------CCCC-----HHHHHHHHHHHHHCCCCEEEecC--CCCCcHHHHHHcC
Confidence                 01234567889999998532        3433     36778999999999999995443  232221      1


Q ss_pred             CCCHHHHH----HHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCCCcCcHHHHHHHHH-
Q 012949          299 AIPPSKVA----YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISL-  369 (452)
Q Consensus       299 r~d~e~l~----~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hnd~GlA~ANaLaAl-  369 (452)
                      ..+++-++    +.++.+.++|-+  .|+++.|    .+..+.+-.+.+.+.  ||- .|++-=--+.-.++-.+-+++ 
T Consensus       143 ~~t~eamveSAl~~v~~le~~~F~diviS~KsS----dv~~~i~ayr~la~~~dyPL-HlGVTEAG~~~~G~IKSaigig  217 (346)
T TIGR00612       143 DATAEAMVQSALEEAAILEKLGFRNVVLSMKAS----DVAETVAAYRLLAERSDYPL-HLGVTEAGMGVKGIVKSSAGIG  217 (346)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcC----CHHHHHHHHHHHHhhCCCCc-eeccccCCCCCCchhHHHHHHH
Confidence            12344433    355667778876  4555544    444444444444444  342 233322222333333333332 


Q ss_pred             ---HcCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHHH---HcCCCC--------------CCCChhhHHHHHHHHHH
Q 012949          370 ---QMGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYML---SGLGVE--------------TNVDLRKLMLAGDFINK  428 (452)
Q Consensus       370 ---~aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~L---~~~Gi~--------------t~iDl~~L~~la~~v~~  428 (452)
                         ..|. |.|-+|+.+             .|.||+-...   +.+|+.              +.+|+..+   ++.+++
T Consensus       218 ~LL~~GIGDTIRVSLT~-------------dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~---~~~ve~  281 (346)
T TIGR00612       218 ILLARGIGDTIRVSLTD-------------DPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEKV---VRRVQE  281 (346)
T ss_pred             HHHhhCCCCeEEEECCC-------------CcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHHH---HHHHHH
Confidence               4564 688888873             3577776543   333432              34555444   334444


Q ss_pred             Hh-CCCCCCCcccccchh
Q 012949          429 HL-GRPSGSKTAIALNRI  445 (452)
Q Consensus       429 ~~-g~~~p~~~pi~G~~v  445 (452)
                      .+ +.+.|-+.++.|.-|
T Consensus       282 ~l~~~~~~l~VAVMGCvV  299 (346)
T TIGR00612       282 ALFHLKTPLKVAVMGCVV  299 (346)
T ss_pred             HHhcCCCCCEEEEECcee
Confidence            33 667777777777544

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=89.26  E-value=2.7  Score=42.62  Aligned_cols=82  Identities=11%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+++..++ ++|-+|.-.+..-++..+..|-++|
T Consensus        22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G  101 (303)
T PRK03620         22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG  101 (303)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999999988   57888888888888877643 4565565445666777888888999


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      |+.|=.
T Consensus       102 adav~~  107 (303)
T PRK03620        102 ADGILL  107 (303)
T ss_pred             CCEEEE
Confidence            998844

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=89.24  E-value=10  Score=36.55  Aligned_cols=183  Identities=12%  Similarity=0.084  Sum_probs=90.7

Q ss_pred             HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949          154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG  232 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~  232 (452)
                      +....+.|.++||+=..-.. ..-|    +..+++.+++..+..+.+|++.+..    -+.|...--+.|       .++
T Consensus        13 a~~A~~~GAdRiELc~~l~~GGlTP----S~g~i~~~~~~~~ipv~vMIRpr~g----dF~Ys~~E~~~M-------~~d   77 (201)
T PF03932_consen   13 ALAAEAGGADRIELCSNLEVGGLTP----SLGLIRQAREAVDIPVHVMIRPRGG----DFVYSDEEIEIM-------KED   77 (201)
T ss_dssp             HHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHTTSEEEEE--SSSS-----S---HHHHHHH-------HHH
T ss_pred             HHHHHHcCCCEEEECCCccCCCcCc----CHHHHHHHHhhcCCceEEEECCCCC----CccCCHHHHHHH-------HHH
Confidence            44557899999999542110 1113    2345555555566777788865541    133444433333       359


Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  312 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l  312 (452)
                      ++.+.+.|++.|.+-+-..|-..          -.+.+.++++.|+  |+++.  +=.+|   |.. .|   ..+..+.+
T Consensus        78 I~~~~~~GadG~VfG~L~~dg~i----------D~~~~~~Li~~a~--~~~~t--FHRAf---D~~-~d---~~~al~~L  136 (201)
T PF03932_consen   78 IRMLRELGADGFVFGALTEDGEI----------DEEALEELIEAAG--GMPVT--FHRAF---DEV-PD---PEEALEQL  136 (201)
T ss_dssp             HHHHHHTT-SEEEE--BETTSSB-----------HHHHHHHHHHHT--TSEEE--E-GGG---GGS-ST---HHHHHHHH
T ss_pred             HHHHHHcCCCeeEEEeECCCCCc----------CHHHHHHHHHhcC--CCeEE--EeCcH---HHh-CC---HHHHHHHH
Confidence            99999999998877653333211          1245566677765  66665  22333   222 22   44567778


Q ss_pred             HHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHH-cCCCEEeec
Q 012949          313 HDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQ-MGISTVDCS  379 (452)
Q Consensus       313 ~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD~S  379 (452)
                      .++|+++|-=   .|...+ .+-.+.++.+.+...+ +.|-.=.    |.-..|.-.-++ .|+..||+|
T Consensus       137 ~~lG~~rVLT---SGg~~~a~~g~~~L~~lv~~a~~~i~Im~Gg----Gv~~~nv~~l~~~tg~~~~H~s  199 (201)
T PF03932_consen  137 IELGFDRVLT---SGGAPTALEGIENLKELVEQAKGRIEIMPGG----GVRAENVPELVEETGVREIHGS  199 (201)
T ss_dssp             HHHT-SEEEE---STTSSSTTTCHHHHHHHHHHHTTSSEEEEES----S--TTTHHHHHHHHT-SEEEET
T ss_pred             HhcCCCEEEC---CCCCCCHHHHHHHHHHHHHHcCCCcEEEecC----CCCHHHHHHHHHhhCCeEEeec
Confidence            8889998863   333322 2222334444443322 2222221    455556666666 899999986

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PTZ00124 adenosine deaminase; Provisional

Probab=89.20  E-value=23  Score=37.06  Aligned_cols=140  Identities=11%  Similarity=0.010  Sum_probs=84.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh---CCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV---LSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~---~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      +-++.+.+-|+..+-+.+  ++.+....-|.+.++.++.+.+.++.|++   .|+.+..-++..      -..+++...+
T Consensus       110 e~~~d~~~dgV~Y~Eir~--~P~~~~~~~gl~~~~vv~av~~g~~~a~~~~~~gI~~~lI~~~~------R~~~~e~a~e  181 (362)
T PTZ00124        110 HAVFNKYKEGVVLMEFRY--SPTFVAFKHNLDIDLIHQAIVKGIKEAVELLDHKIEVGLLCIGD------TGHDAAPIKE  181 (362)
T ss_pred             HHHHHHHHcCCEEEEEEc--CchhhhcCCCCCHHHHHHHHHHHHHHHHhccCCCceEeEEEEec------CCCCHHHHHH
Confidence            456677778988777776  34332234578999999999999998875   577766433321      1135666666


Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHH-HcCCCEEeeccc
Q 012949          308 VAKELHDMGCFEISLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISL-QMGISTVDCSVA  381 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl-~aGa~~VD~Sv~  381 (452)
                      .++.+.++.-..+.+ |-.|-=. +....+.++..++  .+.++.+|+=...+.. ..+...|+ ..|+++|.=.+.
T Consensus       182 ~~~~a~~~~~~vvGi-DLaG~E~~~~~f~~~f~~Ar~--~Gl~~t~HaGE~~~~~~~~~v~~ai~~l~~~RIGHG~~  255 (362)
T PTZ00124        182 SADFCLKHKADFVGF-DHAGHEVDLKPFKDIFDYVRE--AGVNLTVHAGEDVTLPNLNTLYSAIQVLKVKRIGHGIR  255 (362)
T ss_pred             HHHHHHhccCCeEEE-eccCCCCCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcchhHHHHHHHhCCCccccccc
Confidence            777666653333433 5555322 1234555555555  3457899996653333 12334455 589998865554

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=89.17  E-value=19  Score=37.81  Aligned_cols=139  Identities=20%  Similarity=0.175  Sum_probs=84.4

Q ss_pred             HhHHHHHHcCCCEEEEEecC---------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEee--e-c
Q 012949          231 QGFEAAIAAGAKEVAIFASA---------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCV--V-G  293 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~---------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~--~-g  293 (452)
                      +..++|.++|.|.|.|-..-         |+..  +...+|-|.++=++.+.++++.+|+. |  +.|.+-++..  + +
T Consensus       154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~  233 (382)
T cd02931         154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD  233 (382)
T ss_pred             HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence            45667888999998886421         1111  22235778888888888999888874 3  3454444420  0 0


Q ss_pred             C-----C----CCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC-----------C-cHHHHHHHHHHHHHhCCCccEEE
Q 012949          294 C-----P----VEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV-----------G-TPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       294 ~-----p----~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~-----------~-~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .     |    ..+-.++++..++++.+.++|+|.|.+.  .|.           . .+....++++.+++.+.. +|..
T Consensus       234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~  310 (382)
T cd02931         234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDV-PVIM  310 (382)
T ss_pred             cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHCCC-CEEE
Confidence            0     0    0112467889999999999999999884  221           0 111224567778887653 4433


Q ss_pred             -EeCCCcCcHHHHHHHHHHcC-CCEE
Q 012949          353 -HLHDTYGQSLPNILISLQMG-ISTV  376 (452)
Q Consensus       353 -H~Hnd~GlA~ANaLaAl~aG-a~~V  376 (452)
                       ...+    ..+.+..+++.| +|.|
T Consensus       311 ~G~i~----~~~~~~~~l~~g~~D~V  332 (382)
T cd02931         311 AGRME----DPELASEAINEGIADMI  332 (382)
T ss_pred             eCCCC----CHHHHHHHHHcCCCCee
Confidence             3332    246677788877 6655

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=89.17  E-value=10  Score=37.88  Aligned_cols=122  Identities=17%  Similarity=0.136  Sum_probs=71.6

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ..+.-.+.|++.|.|-...++           ++-.+++..+++.+++. +.++.      +   |.  +++    ++++
T Consensus        30 ~A~~~~~~GAdiIDVg~~~~~-----------~eE~~r~~~~v~~l~~~~~~pls------I---DT--~~~----~v~e   83 (261)
T PRK07535         30 LALKQAEAGADYLDVNAGTAV-----------EEEPETMEWLVETVQEVVDVPLC------I---DS--PNP----AAIE   83 (261)
T ss_pred             HHHHHHHCCCCEEEECCCCCc-----------hhHHHHHHHHHHHHHHhCCCCEE------E---eC--CCH----HHHH
Confidence            444556789999999876432           34567788888888764 65543      1   22  233    3444


Q ss_pred             HHHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH----------HHHHHHHHHcCCC----
Q 012949          311 ELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS----------LPNILISLQMGIS----  374 (452)
Q Consensus       311 ~l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA----------~ANaLaAl~aGa~----  374 (452)
                      ++.++  |++.|+  |..|-.  ....++++.+++ +...-+.+|.|+. |..          ....-.|.++|+.    
T Consensus        84 aaL~~~~G~~iIN--sIs~~~--~~~~~~~~l~~~-~g~~vv~m~~~~~-g~P~t~~~~~~~l~~~v~~a~~~GI~~~~I  157 (261)
T PRK07535         84 AGLKVAKGPPLIN--SVSAEG--EKLEVVLPLVKK-YNAPVVALTMDDT-GIPKDAEDRLAVAKELVEKADEYGIPPEDI  157 (261)
T ss_pred             HHHHhCCCCCEEE--eCCCCC--ccCHHHHHHHHH-hCCCEEEEecCCC-CCCCCHHHHHHHHHHHHHHHHHcCCCHhHE
Confidence            45554  887644  655543  112234443333 4333467788754 322          2334457789995    


Q ss_pred             EEeecccCCCC
Q 012949          375 TVDCSVAGLGG  385 (452)
Q Consensus       375 ~VD~Sv~GlGe  385 (452)
                      ++|..+..+|.
T Consensus       158 ilDPgi~~~~~  168 (261)
T PRK07535        158 YIDPLVLPLSA  168 (261)
T ss_pred             EEeCCCCcccC
Confidence            88998886654

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=89.13  E-value=17  Score=36.77  Aligned_cols=128  Identities=19%  Similarity=0.202  Sum_probs=76.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ..+..++.|++.|.|-...+-..   .-..+.++-++++..+++..++ .++.+.      +   |.      +-.++++
T Consensus        43 ~a~~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT------~~~~va~  104 (282)
T PRK11613         43 HANLMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DT------SKPEVIR  104 (282)
T ss_pred             HHHHHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---EC------CCHHHHH
Confidence            44555678999999975332111   1135678888999999988885 354432      1   22      2236778


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC-----------------cHHHHHHHHHHcCC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-----------------QSLPNILISLQMGI  373 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G-----------------lA~ANaLaAl~aGa  373 (452)
                      ++.++|++.|  -|..|...| .+.++   +++ +...-+-.|.+.+..                 ..-...-.|..+|+
T Consensus       105 ~AL~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI  177 (282)
T PRK11613        105 ESAKAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGI  177 (282)
T ss_pred             HHHHcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence            8888899975  477776555 33333   333 322235667643211                 11234455888999


Q ss_pred             C----EEeecccCCCC
Q 012949          374 S----TVDCSVAGLGG  385 (452)
Q Consensus       374 ~----~VD~Sv~GlGe  385 (452)
                      .    ++|-.+ |+|.
T Consensus       178 ~~~~IilDPGi-GF~k  192 (282)
T PRK11613        178 AKEKLLLDPGF-GFGK  192 (282)
T ss_pred             ChhhEEEeCCC-CcCC
Confidence            7    789953 5554

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=89.00  E-value=13  Score=44.66  Aligned_cols=160  Identities=17%  Similarity=0.192  Sum_probs=88.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH-HHHhccC---C-ceeEEecchhhhhhhhhhhhhccch
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME-AVRDLEG---A-RLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~-~i~~~~~---~-~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      +.+..++.++.+.+.|.+.|+||....     . .|.++.+. .+..+..   . +++..+...+               
T Consensus       366 d~~~a~~~A~~qve~GA~iIDVn~~~~-----~-vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~---------------  424 (1178)
T TIGR02082       366 DYDEALDIAKQQVENGAQILDINVDYG-----M-LDGVAAMKRFLNLLASEPDISTVPLMLDSSE---------------  424 (1178)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCC-----C-CCHHHHHHHHHHHHHhccCCCCCeEEEeCCc---------------
Confidence            456778889999999999999997532     1 24333333 3333321   1 3333332221               


Q ss_pred             hhhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCC
Q 012949          221 VISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPV  296 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~  296 (452)
                               .+-+++|+++  |.+.|.=. +.-+.          +   +++.+++..+++.|..+.  +++.  -|.|.
T Consensus       425 ---------~~v~eaaLk~~~G~~IINsI-s~~~g----------~---~~~~~~~~l~~~yga~vV--~m~~de~G~p~  479 (1178)
T TIGR02082       425 ---------WAVLEAGLKCIQGKCIVNSI-SLKDG----------E---ERFIETAKLIKEYGAAVV--VMAFDEEGQAR  479 (1178)
T ss_pred             ---------HHHHHHHHHhcCCCCEEEeC-CCCCC----------C---ccHHHHHHHHHHhCCCEE--EEecCCCCCCC
Confidence                     2367888887  87766522 11100          0   233366788889998875  3332  12222


Q ss_pred             CCCCCHHHHHHHHHHHHH-CCcC--EEEEcC----CcCCCcH------HHHHHHHHHHHHhCCCccEEE
Q 012949          297 EGAIPPSKVAYVAKELHD-MGCF--EISLGD----TIGVGTP------GTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~-~Gad--~I~L~D----T~G~~~P------~~v~~li~~l~~~~p~~~l~v  352 (452)
                      ...-..+.+.+..+.+.+ +|++  .|.| |    |+|....      .+.-+.++.+++++|+.++.+
T Consensus       480 t~e~r~~i~~~~~~~~~~~~Gi~~edIi~-DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~~pg~~~~~  547 (1178)
T TIGR02082       480 TADRKIEICKRAYNILTEKVGFPPEDIIF-DPNILTIATGIEEHRRYAINFIEAIRWIKEELPDAKISG  547 (1178)
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCccccccCchHHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence            111123456667777776 8973  5655 4    3445443      245566777777888755444

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=88.99  E-value=2.8  Score=42.19  Aligned_cols=82  Identities=10%  Similarity=0.040  Sum_probs=65.3

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+..|.+-+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+++...+ .+|-+|.=.+..-++..+..|-++|
T Consensus        20 dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~G   99 (296)
T TIGR03249        20 DGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAG   99 (296)
T ss_pred             CCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhC
Confidence            3578999999999999999999999999998   56778888888888777644 4566665334667777888888999


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      |+.+=.
T Consensus       100 adav~~  105 (296)
T TIGR03249       100 ADGYLL  105 (296)
T ss_pred             CCEEEE
Confidence            998743

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=88.87  E-value=18  Score=32.94  Aligned_cols=126  Identities=21%  Similarity=0.132  Sum_probs=73.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++.+++.|++.|.+.-                +.++   .+.+..+...+++.+.+.    .+. +....+...+.++.
T Consensus        18 ~~~~~~~~gv~gi~~~g----------------~~i~---~~~~~~~~~~~~v~~~v~----~~~-~~~~~~~~~~~a~~   73 (201)
T cd00945          18 LCDEAIEYGFAAVCVNP----------------GYVR---LAADALAGSDVPVIVVVG----FPT-GLTTTEVKVAEVEE   73 (201)
T ss_pred             HHHHHHHhCCcEEEECH----------------HHHH---HHHHHhCCCCCeEEEEec----CCC-CCCcHHHHHHHHHH
Confidence            66778889999776652                1222   222222221244443232    221 11236788889999


Q ss_pred             HHHCCcCEEEEcCCcCCCc---HHHHHHHHHHHHHhC-CCccEEE--EeCCCcCcHHHH--HHHHHHcCCCEEeeccc
Q 012949          312 LHDMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVV-PVEKLAV--HLHDTYGQSLPN--ILISLQMGISTVDCSVA  381 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~---P~~v~~li~~l~~~~-p~~~l~v--H~Hnd~GlA~AN--aLaAl~aGa~~VD~Sv~  381 (452)
                      +.++|+|.+.+.-..+...   ++.+.+.++.+.+.. .+.++-+  ..+.+.......  +..+.+.|++.|-.+..
T Consensus        74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~  151 (201)
T cd00945          74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG  151 (201)
T ss_pred             HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence            9999999998876665443   577888888888874 2334433  223331222111  12345799999988774

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.84  E-value=15  Score=40.14  Aligned_cols=149  Identities=13%  Similarity=0.134  Sum_probs=84.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC---HHHHHHHHHhccCCc-eeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD---ARDVMEAVRDLEGAR-LPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D---~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ..+.+..++=++.|.+-|++.|.+.......|.-.+.+   ..++++.+..+.+.+ +....+...              
T Consensus       185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~--------------  250 (502)
T PRK14326        185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPA--------------  250 (502)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChh--------------
Confidence            46788888888999888999887742110000000012   234455444443321 111111100              


Q ss_pred             hhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecC
Q 012949          220 SVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGC  294 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~  294 (452)
                       .      ...+-++...++|  ...+++.+ +.||--++. +|+.  ...+.+.++++.+++.  |+.+.++++  +|.
T Consensus       251 -~------~~~ell~~m~~~g~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGf  318 (502)
T PRK14326        251 -E------FTDDVIEAMAETPNVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGF  318 (502)
T ss_pred             -h------CCHHHHHHHHhcCCcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EEC
Confidence             0      1224556666776  67788865 566654443 4443  3345566777888885  667776666  677


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      |.++   .+.+.+.++.+.+.+.+.+.
T Consensus       319 PgET---~edf~~Tl~~i~~~~~~~~~  342 (502)
T PRK14326        319 PGET---EEDFQATLDVVREARFSSAF  342 (502)
T ss_pred             CCCC---HHHHHHHHHHHHHcCCCEEE
Confidence            8775   56677777777777776443

>PRK08185 hypothetical protein; Provisional

Probab=88.78  E-value=5.2  Score=40.45  Aligned_cols=102  Identities=12%  Similarity=0.115  Sum_probs=71.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCCCcc
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVEK  349 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~  349 (452)
                      .++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.-..--..|..+..++..+.++.. +|
T Consensus         2 ~~~L~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP   70 (283)
T PRK08185          2 KELLKVAKEHQFAVGA-----FN-----VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP   70 (283)
T ss_pred             HHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence            4667889999987752     21     24678888899999999877 4444333222234557888888777765 36


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949          350 LAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  385 (452)
Q Consensus       350 l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  385 (452)
                      +.+|  =|-|.-+.....|+++|.+  ++|+|-..+-+
T Consensus        71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~ee  106 (283)
T PRK08185         71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLLPYEE  106 (283)
T ss_pred             EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence            6665  4777788899999999977  67888775554

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=88.77  E-value=6.1  Score=39.29  Aligned_cols=85  Identities=11%  Similarity=0.065  Sum_probs=69.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEeC-CCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHLH-DTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~H-nd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+-+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+++...+ .+|-+|.- ++..-++..+..|.++
T Consensus        15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~   94 (284)
T cd00950          15 DGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKA   94 (284)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHc
Confidence            3578899999999999999999999999998   67788888888888887753 56767765 4677888999999999


Q ss_pred             CCCEEeeccc
Q 012949          372 GISTVDCSVA  381 (452)
Q Consensus       372 Ga~~VD~Sv~  381 (452)
                      |++.|=..--
T Consensus        95 G~d~v~~~~P  104 (284)
T cd00950          95 GADAALVVTP  104 (284)
T ss_pred             CCCEEEEccc
Confidence            9998776643

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=88.75  E-value=1.8  Score=43.77  Aligned_cols=120  Identities=18%  Similarity=0.087  Sum_probs=75.3

Q ss_pred             HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +..+.|-++|.+.|.+.... ||.. +.. |..+-...+.+.. ++.+  -.++|.+            ..-..+ ..-+
T Consensus        28 ~~a~iae~~g~~~v~~~~~~psd~~-~~g-g~~Rm~~p~~I~a-Ik~~--V~iPVig------------k~Righ-~~Ea   89 (293)
T PRK04180         28 EQAKIAEEAGAVAVMALERVPADIR-AAG-GVARMADPKMIEE-IMDA--VSIPVMA------------KARIGH-FVEA   89 (293)
T ss_pred             HHHHHHHHhChHHHHHccCCCchHh-hcC-CeeecCCHHHHHH-HHHh--CCCCeEE------------eehhhH-HHHH
Confidence            35667778888877765432 4432 222 3333333333321 1211  2566642            111233 4567


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      +.+.++|+|.|   |-+..++|  ..+++...|..| ..+|-.-+- |    +..++.++..|+++|-+|
T Consensus        90 ~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~-~----l~EAlrai~~GadmI~Tt  148 (293)
T PRK04180         90 QILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGAR-N----LGEALRRIAEGAAMIRTK  148 (293)
T ss_pred             HHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence            78899999999   88899999  668899999988 334433332 2    577899999999999988

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=88.75  E-value=28  Score=34.88  Aligned_cols=193  Identities=15%  Similarity=0.143  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQ  215 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~  215 (452)
                      .++.+.-.++++.|.+. |++.|=+......  .+.+. .+|-.+.++   +..+-++++++    .+.+          
T Consensus        17 ~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE--~~~Lt-~~Er~~~~~~~~~~~~~~~~viagv~~~~~~----------   83 (288)
T cd00954          17 EINEDVLRAIVDYLIEKQGVDGLYVNGSTGE--GFLLS-VEERKQIAEIVAEAAKGKVTLIAHVGSLNLK----------   83 (288)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCEEEECcCCcC--cccCC-HHHHHHHHHHHHHHhCCCCeEEeccCCCCHH----------
Confidence            47899999999999999 9999877533221  23343 233333333   22222333332    1111          


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecC
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGC  294 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~  294 (452)
                          +.        .+..+.|.++|++.+.+..+..       +..|.++.++-+..+.+   .. ++++..|     ..
T Consensus        84 ----~a--------i~~a~~a~~~Gad~v~~~~P~y-------~~~~~~~i~~~~~~v~~---a~~~lpi~iY-----n~  136 (288)
T cd00954          84 ----ES--------QELAKHAEELGYDAISAITPFY-------YKFSFEEIKDYYREIIA---AAASLPMIIY-----HI  136 (288)
T ss_pred             ----HH--------HHHHHHHHHcCCCEEEEeCCCC-------CCCCHHHHHHHHHHHHH---hcCCCCEEEE-----eC
Confidence                11        2355678899999998876532       23455666665655544   34 5676532     23


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          295 PVEG--AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       295 p~~~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      |..+  ..+++.+.+++    + ....+.++|+.|-  ...+.++    ++..+....-+-+++.      ..+.++.+|
T Consensus       137 P~~tg~~l~~~~~~~L~----~-~pnivgiK~s~~d--~~~~~~~----~~~~~~~~~v~~G~d~------~~~~~~~~G  199 (288)
T cd00954         137 PALTGVNLTLEQFLELF----E-IPNVIGVKFTATD--LYDLERI----RAASPEDKLVLNGFDE------MLLSALALG  199 (288)
T ss_pred             ccccCCCCCHHHHHHHh----c-CCCEEEEEeCCCC--HHHHHHH----HHhCCCCcEEEEechH------HHHHHHHcC
Confidence            4322  35666666555    3 3579999999874  3444443    3445532233444543      345577899


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      ++..   +.|          .+|+-.|.++...+
T Consensus       200 ~~G~---i~~----------~~n~~P~~~~~l~~  220 (288)
T cd00954         200 ADGA---IGS----------TYNVNGKRYRKIFE  220 (288)
T ss_pred             CCEE---EeC----------hhhhCHHHHHHHHH
Confidence            8743   443          33455555555554

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PLN02417 dihydrodipicolinate synthase

Probab=88.70  E-value=6.9  Score=39.15  Aligned_cols=100  Identities=11%  Similarity=0.155  Sum_probs=76.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+-+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+..++ ++|-+|. +++.--++..+..|-++
T Consensus        16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~   95 (280)
T PLN02417         16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV   95 (280)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999   56778888888887777654 4666655 67888889999999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          372 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       372 Ga~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      ||+.|=..-      ||-    ..++-|+++.+++
T Consensus        96 Gadav~~~~------P~y----~~~~~~~i~~~f~  120 (280)
T PLN02417         96 GMHAALHIN------PYY----GKTSQEGLIKHFE  120 (280)
T ss_pred             CCCEEEEcC------Ccc----CCCCHHHHHHHHH
Confidence            999776643      221    1234566666665

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125

Probab=88.70  E-value=16  Score=38.86  Aligned_cols=147  Identities=14%  Similarity=0.064  Sum_probs=83.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhccCCcee---EEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLEGARLP---VLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~~~~l~---~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.++.++=++.|.+.|++.|.+...   ........-....++++.+..+.+.+..   .+-|..             
T Consensus       163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~-------------  229 (430)
T TIGR01125       163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDE-------------  229 (430)
T ss_pred             ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCccc-------------
Confidence            357788888888888899998875421   1110000012356666666554322211   010110             


Q ss_pred             cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~  292 (452)
                                ...+-++.+.++|  ...+++.+ +.|+.-++. +|+.  ...+.+.++++.+++.  |+.+.++++  +
T Consensus       230 ----------~~~ell~~~~~~~~~~~~l~iglES~s~~vLk~-m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~  294 (430)
T TIGR01125       230 ----------LTDDVIDLMAEGPKVLPYLDIPLQHASDRILKL-MRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--V  294 (430)
T ss_pred             ----------CCHHHHHHHhhCCcccCceEeCCCCCCHHHHhh-CCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--E
Confidence                      1224556666774  67777755 555544332 3332  2245566777888887  455555554  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       295 G~PgET---~e~~~~t~~fl~~~~~~~~~  320 (430)
T TIGR01125       295 GFPGET---EEDFQELLDFVEEGQFDRLG  320 (430)
T ss_pred             ECCCCC---HHHHHHHHHHHHhcCCCEEe
Confidence            777664   67777777877888876554

This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.

>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming

Probab=88.64  E-value=21  Score=37.45  Aligned_cols=139  Identities=15%  Similarity=0.170  Sum_probs=82.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL----SIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~----G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      -++.-...|.|.+..++-..+      ...+++++-+.+.+..+++++.    ...-.-..  .|| +..+-.+++.-.+
T Consensus       125 ~i~~q~~igsDI~m~LD~~~~------~~~~~~~~~~av~rT~rW~~r~~~~~~~~~~~~~--lfg-iVqGg~~~dLR~~  195 (368)
T TIGR00430       125 SMEIQYALGSDIIMAFDECTP------YPADRDYAEKSTERTLRWAERCLEAHDRRGNKQA--LFG-IVQGGTYEDLRSQ  195 (368)
T ss_pred             HHHHHHHhCCCEEEECCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCee--EEE-EeCCCCCHHHHHH
Confidence            344445578887777653322      1233344444444444443331    10000001  122 3445455555555


Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEeecccCC
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      -++.+.+.+.+.+.|.--+..-..+++.++|..++..+|.. .-.|.   +|.+. .+.+.++..|+|.+|.+.-=.
T Consensus       196 sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp~~-kPryl---~Gvg~P~~i~~~v~~GvD~FD~~~ptr  268 (368)
T TIGR00430       196 SAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLPKD-KPRYL---MGVGTPEDLLNAIRRGIDMFDCVMPTR  268 (368)
T ss_pred             HHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCCcc-cceee---cCCCCHHHHHHHHHcCCCEEEecCccc
Confidence            78889999999988877333345677889999988888752 23343   55554 689999999999999887533

This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=88.63  E-value=3.2  Score=41.81  Aligned_cols=83  Identities=8%  Similarity=0.065  Sum_probs=71.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHH
Q 012949          297 EGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQ  370 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~  370 (452)
                      .+..|.+.+.++++.+.+.| ++.|.+.-|+|=   +++++-.++++.+.+...+ ++|-+|. |++.--++..+..|-+
T Consensus        15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~   94 (290)
T TIGR00683        15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE   94 (290)
T ss_pred             CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999 999999999874   7888888899888887653 5778885 7888888999999999


Q ss_pred             cCCCEEeec
Q 012949          371 MGISTVDCS  379 (452)
Q Consensus       371 aGa~~VD~S  379 (452)
                      +||+.|=..
T Consensus        95 ~Gad~v~v~  103 (290)
T TIGR00683        95 LGYDCLSAV  103 (290)
T ss_pred             hCCCEEEEe
Confidence            999988763

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site

Probab=88.57  E-value=9.6  Score=38.45  Aligned_cols=71  Identities=15%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      .+++.+.+.++.+.+.|++.|-+--+-+           ..+++.+..+++..++.  +.++.+|++.+     .....+
T Consensus       117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~  189 (342)
T cd01299         117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA  189 (342)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence            3578888889999999999887664332           46788888888887764  45788888754     455678


Q ss_pred             HHcCCCEEe
Q 012949          369 LQMGISTVD  377 (452)
Q Consensus       369 l~aGa~~VD  377 (452)
                      +++|++.|+
T Consensus       190 l~~G~~~i~  198 (342)
T cd01299         190 IRAGVDTIE  198 (342)
T ss_pred             HHcCCCEEe
Confidence            889988653

The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=88.55  E-value=30  Score=35.09  Aligned_cols=195  Identities=21%  Similarity=0.291  Sum_probs=105.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|=+......  .|.+.  +..++++.+.+..+-++++++    .+.+            
T Consensus        21 ~vD~~a~~~lv~~li~~Gv~gi~~~GttGE--~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~------------   86 (299)
T COG0329          21 SVDEEALRRLVEFLIAAGVDGLVVLGTTGE--SPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTA------------   86 (299)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--chhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHH------------
Confidence            378999999999999999997777432211  23332  223344444444443444332    2221            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                        +.        .+-.+.|.+.|+|-+.+..+-   +    .+-+.++..+-+..+++.+   ++++..   |.  .|.-
T Consensus        87 --ea--------i~lak~a~~~Gad~il~v~Py---Y----~k~~~~gl~~hf~~ia~a~---~lPvil---YN--~P~~  141 (299)
T COG0329          87 --EA--------IELAKHAEKLGADGILVVPPY---Y----NKPSQEGLYAHFKAIAEAV---DLPVIL---YN--IPSR  141 (299)
T ss_pred             --HH--------HHHHHHHHhcCCCEEEEeCCC---C----cCCChHHHHHHHHHHHHhc---CCCEEE---Ee--Cccc
Confidence              11        124566778999999887652   1    2334555666555555544   555542   22  2322


Q ss_pred             C--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          298 G--AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       298 ~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +  ..+++.+.+++    + ....+.++|+.|-  -..+.+    +++..++ .-+.+=+.++      -.+.++..|++
T Consensus       142 tg~~l~~e~i~~la----~-~~nivgiKd~~gd--~~~~~~----~~~~~~~~~f~v~~G~d~------~~~~~~~~G~~  204 (299)
T COG0329         142 TGVDLSPETIARLA----E-HPNIVGVKDSSGD--LDRLEE----IIAALGDRDFIVLSGDDE------LALPALLLGAD  204 (299)
T ss_pred             cCCCCCHHHHHHHh----c-CCCEEEEEeCCcC--HHHHHH----HHHhcCccCeeEEeCchH------HHHHHHhCCCC
Confidence            2  23455555444    4 4679999999993  233333    3333443 1233333332      34455568876


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                         +.+.          .++|..-+..+...+.
T Consensus       205 ---G~is----------~~~N~~p~~~~~l~~~  224 (299)
T COG0329         205 ---GVIS----------VTANVAPELAVELYRA  224 (299)
T ss_pred             ---eEEe----------cccccCHHHHHHHHHH
Confidence               3444          3456766766665554

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=88.37  E-value=4.4  Score=40.19  Aligned_cols=175  Identities=19%  Similarity=0.247  Sum_probs=99.1

Q ss_pred             HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.+.+..+|.+.+-+..- +...   + ...+.+++.++.. +  + -+.||..        -.+..++.++       
T Consensus        24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~~-~--~-~~lpNTa--------G~~ta~eAv~-------   80 (248)
T cd04728          24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDKS-G--Y-TLLPNTA--------GCRTAEEAVR-------   80 (248)
T ss_pred             HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhcccc-C--C-EECCCCC--------CCCCHHHHHH-------
Confidence            4567788899999988743 1110   0 1224566666531 1  1 1345543        1111112111       


Q ss_pred             HhHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          231 QGFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       -.+.|.+. |.++|.+-+-..+-           .-+.+..+.++.|+++   |+.|..|..     +     |+    
T Consensus        81 -~a~lare~~~~~~iKlEVi~d~~-----------~Llpd~~~tv~aa~~L~~~Gf~vlpyc~-----d-----d~----  134 (248)
T cd04728          81 -TARLAREALGTDWIKLEVIGDDK-----------TLLPDPIETLKAAEILVKEGFTVLPYCT-----D-----DP----  134 (248)
T ss_pred             -HHHHHHHHhCCCeEEEEEecCcc-----------ccccCHHHHHHHHHHHHHCCCEEEEEeC-----C-----CH----
Confidence             23444454 77888887654442           2245666777888887   998864332     1     22    


Q ss_pred             HHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE--eeccc
Q 012949          307 YVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      ..++++.++|++.| .+  ..+|....-...++|+.+++.. .++|-+-.    |.. -.-+..|++.||+.|  .++|.
T Consensus       135 ~~ar~l~~~G~~~v-mPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~eg----GI~tpeda~~AmelGAdgVlV~SAIt  208 (248)
T cd04728         135 VLAKRLEDAGCAAV-MPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDA----GIGTPSDAAQAMELGADAVLLNTAIA  208 (248)
T ss_pred             HHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeC----CCCCHHHHHHHHHcCCCEEEEChHhc
Confidence            47788888999988 44  5666555444466677777763 33443322    222 356778999999844  44454

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.35  E-value=18  Score=38.56  Aligned_cols=146  Identities=16%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC---CCcccccCCHHHHHHHHHhccCCc-ee--EEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS---PKWVPQLADARDVMEAVRDLEGAR-LP--VLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s---~~~~p~~~D~e~v~~~i~~~~~~~-l~--~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.++.++-++.|.+.|++.|-+....-   ....+...+..++++.+..+.+.. +.  ..-|..             
T Consensus       175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~-------------  241 (439)
T PRK14328        175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKD-------------  241 (439)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhh-------------
Confidence            46788888889999999999987754211   111111123455666665443321 21  111210             


Q ss_pred             cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~  292 (452)
                                ...+-++...++|  ...+++.+ +.|+.-++. +|+.  ...+.+.++++.+++.  ++.+.++++  +
T Consensus       242 ----------i~~ell~~l~~~~~~~~~l~iglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--v  306 (439)
T PRK14328        242 ----------LSDDLIEAIADCDKVCEHIHLPVQSGSNRILKK-MNRH--YTREYYLELVEKIKSNIPDVAITTDII--V  306 (439)
T ss_pred             ----------cCHHHHHHHHhCCCcCceeeeCCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--E
Confidence                      1223555566665  67788875 566654443 4432  1233444566777776  555655555  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEI  320 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I  320 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+
T Consensus       307 G~PgET---~ed~~~tl~~i~~l~~~~~  331 (439)
T PRK14328        307 GFPGET---EEDFEETLDLVKEVRYDSA  331 (439)
T ss_pred             ECCCCC---HHHHHHHHHHHHhcCCCcc
Confidence            778775   5666667777777765543

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=88.34  E-value=21  Score=34.66  Aligned_cols=115  Identities=15%  Similarity=0.078  Sum_probs=62.1

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCC-------C-
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAI-------P-  301 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~-------d-  301 (452)
                      .++.+.++|++.+.+......               +.++.+++.+++.  +..+.+.+...   +...+.       + 
T Consensus        72 ~i~~~~~~gad~itvH~~ag~---------------~~i~~~~~~~~~~~~~~~~~V~~lts---~~~~~l~~~~~~~~~  133 (230)
T PRK00230         72 AVRALAKLGVDMVNVHASGGP---------------RMMKAAREALEPKSRPLLIAVTVLTS---MDEEDLAELGINLSL  133 (230)
T ss_pred             HHHHHHHcCCCEEEEcccCCH---------------HHHHHHHHHhhccCCCeEEEEEECCC---CCHHHHHhCcCCCCH
Confidence            567788999999888765443               3344445555543  33444444432   221111       1 


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC--------CCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--------PVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~--------p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      .+.+..+++.+.+.|++.+...       |..    ++.+|+.+        |+++.. -...+-.--+...-.|+++|+
T Consensus       134 ~~~v~~~a~~a~~~g~dgvv~~-------~~~----~~~ir~~~~~~~~~v~pGI~~~-g~~~~dq~~~~~~~~ai~~Ga  201 (230)
T PRK00230        134 EEQVLRLAKLAQEAGLDGVVCS-------AQE----AAAIREATGPDFLLVTPGIRPA-GSDAGDQKRVMTPAQAIAAGS  201 (230)
T ss_pred             HHHHHHHHHHHHHcCCeEEEeC-------hHH----HHHHHhhcCCceEEEcCCcCCC-CCCcchHHHHhCHHHHHHcCC
Confidence            2455677888888999876543       222    23333333        443210 001122223456778889999


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      +.|
T Consensus       202 d~i  204 (230)
T PRK00230        202 DYI  204 (230)
T ss_pred             CEE
Confidence            977

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=88.30  E-value=3.4  Score=41.35  Aligned_cols=84  Identities=11%  Similarity=0.065  Sum_probs=66.5

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+-+.++++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+...+ ++|-+|. +++..-++..+..|-++
T Consensus        13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~   92 (285)
T TIGR00674        13 DGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDV   92 (285)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHc
Confidence            3578899999999999999999999998988   45677777788877776543 4566665 55677788899999999


Q ss_pred             CCCEEeecc
Q 012949          372 GISTVDCSV  380 (452)
Q Consensus       372 Ga~~VD~Sv  380 (452)
                      ||+.|=..-
T Consensus        93 Gad~v~v~p  101 (285)
T TIGR00674        93 GADGFLVVT  101 (285)
T ss_pred             CCCEEEEcC
Confidence            999876654

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.26  E-value=20  Score=39.27  Aligned_cols=148  Identities=14%  Similarity=0.139  Sum_probs=84.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CCCCccccc-CCHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQL-ADARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~-~D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~  217 (452)
                      ..+.++.++-++.|.+.|++.|.+...   ...+..... ....++++.+..+  ..+++...-|..             
T Consensus       240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~-------------  306 (509)
T PRK14327        240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRD-------------  306 (509)
T ss_pred             eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCccc-------------
Confidence            478899999999999999998876421   111110000 1134556665543  112222111210             


Q ss_pred             cchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeee
Q 012949          218 HASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVV  292 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~  292 (452)
                                ...+-++...++|  ...+++.+ +.|+.-++. .|+.  ...+.+.++++.+|+.  ++.+.+.++  +
T Consensus       307 ----------i~deli~~m~~~g~~~~~l~lgvQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~p~i~i~tdiI--v  371 (509)
T PRK14327        307 ----------FDDHLIEVLAKGGNLVEHIHLPVQSGSTEVLKI-MARK--YTRESYLELVRKIKEAIPNVALTTDII--V  371 (509)
T ss_pred             ----------CCHHHHHHHHhcCCccceEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCcEEeeeEE--E
Confidence                      1123556666777  57788876 556654433 3332  2234555777888887  555555555  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      |.|.++   .+.+.+.++.+.+.+.+.+.+
T Consensus       372 GfPgET---~edf~~Tl~~v~~l~~d~~~~  398 (509)
T PRK14327        372 GFPNET---DEQFEETLSLYREVGFDHAYT  398 (509)
T ss_pred             eCCCCC---HHHHHHHHHHHHHcCCCeEEE
Confidence            778774   567777777777778765554

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=88.24  E-value=3.3  Score=41.79  Aligned_cols=84  Identities=17%  Similarity=0.097  Sum_probs=67.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+.+.++++.+.+.|++.|.+.-|+|   .++-++-.++++.+.+...+ ++|-+|. +++.--++..+..|-++
T Consensus        15 dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~   94 (294)
T TIGR02313        15 NGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEA   94 (294)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999998   45667777777777776644 5666655 67788889999999999


Q ss_pred             CCCEEeecc
Q 012949          372 GISTVDCSV  380 (452)
Q Consensus       372 Ga~~VD~Sv  380 (452)
                      ||+.|=..-
T Consensus        95 Gad~v~v~p  103 (294)
T TIGR02313        95 GADAAMVIV  103 (294)
T ss_pred             CCCEEEEcC
Confidence            999775543

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB

Probab=88.24  E-value=18  Score=38.49  Aligned_cols=148  Identities=12%  Similarity=0.112  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-----ccccCCHHHHHHHHHhccCCc---eeEEecchhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW-----VPQLADARDVMEAVRDLEGAR---LPVLTPNLKVILQRSILFQ  215 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~-----~p~~~D~e~v~~~i~~~~~~~---l~~l~~~~~~~i~r~~~~~  215 (452)
                      ..+.+..++-++.|.+.|++.|-+.......+     .+...+..++++.+....+..   +..+-|..           
T Consensus       173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~-----------  241 (438)
T TIGR01574       173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLD-----------  241 (438)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCccc-----------
Confidence            57889999999999999999886643110001     011113455666665433332   11111110           


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEe
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSC  290 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~  290 (452)
                                  ...+-++...++|  ...+++.+ +.|+.-++. .|+.  ...+.+.++++.+++.  |+.+.+.++ 
T Consensus       242 ------------l~~ell~~l~~~g~~~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~ir~~~~~i~i~~d~I-  305 (438)
T TIGR01574       242 ------------FDDDLIEVFANNPKLCKSMHLPVQSGSSEILKL-MKRG--YTREWYLNLVRKLRAACPNVSISTDII-  305 (438)
T ss_pred             ------------CCHHHHHHHHhCCCccCceeeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEeeCEE-
Confidence                        1224566677777  78888876 556655443 3332  1233444566777776  666666665 


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                       +|.|.++   .+.+.+.++.+.+.+.+.+.+
T Consensus       306 -vG~PgEt---~ed~~~tl~~i~~~~~~~~~~  333 (438)
T TIGR01574       306 -VGFPGET---EEDFEETLDLLREVEFDSAFS  333 (438)
T ss_pred             -EeCCCCC---HHHHHHHHHHHHhcCCCeeee
Confidence             5677764   677777888888888775553

Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=88.19  E-value=11  Score=37.69  Aligned_cols=101  Identities=16%  Similarity=0.133  Sum_probs=63.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     -.|.+|-.+.++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~~i~~l~~~Gv~gi~~~Gs~GE~~-----~ls~~Er~~~~~~~~~~~~~-~~~vi~gv---------~~~~~~~~i~~a~   90 (292)
T PRK03170         26 KLVDYLIANGTDGLVVVGTTGESP-----TLTHEEHEELIRAVVEAVNG-RVPVIAGT---------GSNSTAEAIELTK   90 (292)
T ss_pred             HHHHHHHHcCCCEEEECCcCCccc-----cCCHHHHHHHHHHHHHHhCC-CCcEEeec---------CCchHHHHHHHHH
Confidence            367777888999888887777753     34666666666555555532 23443222         1234577777888


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.|.+ +=.....+++.+.+.++.+.+..+
T Consensus        91 ~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~  127 (292)
T PRK03170         91 FAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD  127 (292)
T ss_pred             HHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence            888888886665 333344466777777777776543

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=88.18  E-value=5.6  Score=40.31  Aligned_cols=103  Identities=14%  Similarity=0.099  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCC-CcHHHHHHHHHHHHHhC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~-~~P~~v~~li~~l~~~~  345 (452)
                      .+.++.+.|++.++-|-+     |.     -++.+.+..+++.+.+.+.. .|.+... ... .....+..+++.+.++.
T Consensus         5 ~~~~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~   74 (285)
T PRK07709          5 SMKEMLNKALEGKYAVGQ-----FN-----MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEM   74 (285)
T ss_pred             cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHc
Confidence            346777899999987752     21     24678888899999988876 5555442 233 33456778888888776


Q ss_pred             C-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCC
Q 012949          346 P-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGL  383 (452)
Q Consensus       346 p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~Gl  383 (452)
                      . .+|+.+|  =|-|.-+.....|+++|.+  ++|+|-..+
T Consensus        75 ~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVM~DgS~lp~  113 (285)
T PRK07709         75 NITVPVAIH--LDHGSSFEKCKEAIDAGFTSVMIDASHHPF  113 (285)
T ss_pred             CCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCH
Confidence            4 2466655  5777789999999999998  779887644

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=88.13  E-value=7.7  Score=39.44  Aligned_cols=107  Identities=13%  Similarity=0.243  Sum_probs=73.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-----C------CC
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-----G------VG  329 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-----G------~~  329 (452)
                      .+.++.++.++++++.   ..++|.+-+-       .+--++..+.+.++++.++|+..|.|-|.+     |      +.
T Consensus        61 l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv  130 (292)
T PRK11320         61 TTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIV  130 (292)
T ss_pred             CCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCccc
Confidence            3567777776665443   4677764333       333378899999999999999999999987     3      34


Q ss_pred             cHHHHHHHHHHHHHhCCCccEEEEeC------CCcCcHHHHHHHHHHcCCCEEe
Q 012949          330 TPGTVVPMLEAVMAVVPVEKLAVHLH------DTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       330 ~P~~v~~li~~l~~~~p~~~l~vH~H------nd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+++....|++.++.-.+..+-+=.-      ..+--|+.-+.+-.+||||.|=
T Consensus       131 ~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~if  184 (292)
T PRK11320        131 SQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIF  184 (292)
T ss_pred             CHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence            66777777887776543222333222      2345678888889999999663

>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=88.13  E-value=11  Score=41.14  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=87.0

Q ss_pred             HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  313 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~  313 (452)
                      +--...|.|.+..++-..+      ...+++++-+.+....+++++.--...-.=...| .+..|-..++--.+-++.+.
T Consensus       109 ~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~-giVQGg~~~dLR~~sa~~l~  181 (487)
T PRK13533        109 EFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGDMLWV-APVQGGTYPDLREESAREAS  181 (487)
T ss_pred             HHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEE-EEecCCCCHHHHHHHHHHHH
Confidence            3334568898888764332      2334555555555555444432100000000112 23456677888888999999


Q ss_pred             HCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeeccc
Q 012949          314 DMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       314 ~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ++|.+.+.|.-.+...   ...++.++|..++..+|. .++.+     +|.| ..+...++..|+|.+|.+..
T Consensus       182 ~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL-----~GvG~P~~i~~~V~lGvDlFD~v~p  249 (487)
T PRK13533        182 KLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHL-----FGAGHPMMFALAVALGCDLFDSAAY  249 (487)
T ss_pred             hCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEE-----eCCCCHHHHHHHHHhCCCceeccHH
Confidence            9999999987655554   568899999999999864 34433     3555 46899999999999998764

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=88.07  E-value=33  Score=35.20  Aligned_cols=164  Identities=15%  Similarity=0.178  Sum_probs=82.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc--CCH-HHHHHHHHhcc-CCceeEEe---cchhhhhhhhhhhhhc
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL--ADA-RDVMEAVRDLE-GARLPVLT---PNLKVILQRSILFQQC  217 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~-e~v~~~i~~~~-~~~l~~l~---~~~~~~i~r~~~~~~~  217 (452)
                      .+.++-.++++.+.++|++.||+-....|. -+..  .+. +.+++.++.+. .+.+++++   |+..            
T Consensus       111 ~~~~e~~~~a~~~~~agad~ielN~scpp~-~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~------------  177 (334)
T PRK07565        111 SSAGGWVDYARQIEQAGADALELNIYYLPT-DPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS------------  177 (334)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCCC-CCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch------------
Confidence            356777899999999999999996532121 0111  112 22334444332 12344443   2211            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC----hHHHhh---hcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEE
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS----EAFSKS---NINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVS  289 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S----d~~~~~---~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~  289 (452)
                        +        ..+..+.+.++|++.|.+.....    +.....   ..+.|-...+....+.+..+++ .++++.+   
T Consensus       178 --~--------~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig---  244 (334)
T PRK07565        178 --N--------LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAA---  244 (334)
T ss_pred             --h--------HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEE---
Confidence              0        01244667789999988765431    110000   1122333333334455555544 3565532   


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949          290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~  344 (452)
                        .    .+-.+.+++.+..    .+||+.|.++=..=.--|.-+.++++.|.+.
T Consensus       245 --~----GGI~s~~Da~e~l----~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~  289 (334)
T PRK07565        245 --T----TGVHDAEDVIKML----LAGADVVMIASALLRHGPDYIGTILRGLEDW  289 (334)
T ss_pred             --E----CCCCCHHHHHHHH----HcCCCceeeehHHhhhCcHHHHHHHHHHHHH
Confidence              1    3444566655544    3799888887222111266666666666543

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=88.05  E-value=6.4  Score=38.15  Aligned_cols=110  Identities=14%  Similarity=0.067  Sum_probs=60.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-CC---C--C---
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-GA---I--P---  301 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-~r---~--d---  301 (452)
                      +.++.+.++|.+.|-+..+.         ..       .+.++.+.+++.|+++.+ ++..++.... .+   .  +   
T Consensus        18 e~~~~~~e~G~~~vEl~~~~---------~~-------~~~~l~~~l~~~gl~v~~-~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T TIGR03234        18 ERFAAAAQAGFTGVEYLFPY---------DW-------DAEALKARLAAAGLEQVL-FNLPAGDWAAGERGIACLPGREE   80 (254)
T ss_pred             HHHHHHHHcCCCEEEecCCc---------cC-------CHHHHHHHHHHcCCeEEE-EeCCCCccccCCCccccCCccHH
Confidence            47888999999999987532         11       123445677899999863 2211110000 00   0  1   


Q ss_pred             --HHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHH-HHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949          302 --PSKVAYVAKELHDMGCFEISLGDTI--GVGTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDT  357 (452)
Q Consensus       302 --~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd  357 (452)
                        .+.+.+.++.+.++|+..|.+.-..  +-...++ ...+++.+++.   .  -++.|.++.||.
T Consensus        81 ~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~  146 (254)
T TIGR03234        81 EFREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEPINS  146 (254)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence              1445567778889999998874211  1111222 23333333332   2  245788888864

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=87.96  E-value=2.9  Score=40.50  Aligned_cols=99  Identities=15%  Similarity=0.170  Sum_probs=68.6

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+++...++++.+.+.|++.|-+.    .-+| ...+.|+.+++.+|+..|+...=-|.    ..+-.|+++||+++=+-
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~FivsP   94 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVSP   94 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEECC
Confidence            468999999999999999999887    4456 56677899999999877777665554    67889999999976432


Q ss_pred             ccCC--------CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          380 VAGL--------GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       380 v~Gl--------GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..--        =+.|+.||  -..++| +..++ .+|.+
T Consensus        95 ~~~~~vi~~a~~~~i~~iPG--~~TptE-i~~a~-~~Ga~  130 (212)
T PRK05718         95 GLTPPLLKAAQEGPIPLIPG--VSTPSE-LMLGM-ELGLR  130 (212)
T ss_pred             CCCHHHHHHHHHcCCCEeCC--CCCHHH-HHHHH-HCCCC
Confidence            1100        12466666  245666 44444 44543

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=87.88  E-value=31  Score=34.39  Aligned_cols=178  Identities=19%  Similarity=0.271  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|=++.....  ...+.+  ..++.+.+.+..+-++.+++    .+.+            
T Consensus        18 ~id~~~~~~~i~~l~~~Gv~gl~~~GstGE--~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~------------   83 (289)
T PF00701_consen   18 SIDEDALKRLIDFLIEAGVDGLVVLGSTGE--FYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTE------------   83 (289)
T ss_dssp             SB-HHHHHHHHHHHHHTTSSEEEESSTTTT--GGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHH------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccCCHHHHHHHHHHHHHHccCceEEEecCcchhHH------------
Confidence            478899999999999999999888643322  122322  23333333332222333322    1221            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                        +        ..+-.+.|.+.|+|.+.+..+.   +    +..|.++.++-++++.   ..-++++..|-.-..   ..
T Consensus        84 --~--------~i~~a~~a~~~Gad~v~v~~P~---~----~~~s~~~l~~y~~~ia---~~~~~pi~iYn~P~~---tg  140 (289)
T PF00701_consen   84 --E--------AIELARHAQDAGADAVLVIPPY---Y----FKPSQEELIDYFRAIA---DATDLPIIIYNNPAR---TG  140 (289)
T ss_dssp             --H--------HHHHHHHHHHTT-SEEEEEEST---S----SSCCHHHHHHHHHHHH---HHSSSEEEEEEBHHH---HS
T ss_pred             --H--------HHHHHHHHhhcCceEEEEeccc---c----ccchhhHHHHHHHHHH---hhcCCCEEEEECCCc---cc
Confidence              1        1235677888999999887652   1    3456666665554444   345677764433110   11


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE-EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~-vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ...+++.+.+++    + -...+.++|+.|-  +.++.++++    ..+. .+. +.+++.  +    .+.++.+|++.+
T Consensus       141 ~~ls~~~l~~L~----~-~~nv~giK~s~~~--~~~~~~~~~----~~~~-~~~v~~G~d~--~----~~~~l~~G~~G~  202 (289)
T PF00701_consen  141 NDLSPETLARLA----K-IPNVVGIKDSSGD--LERLIQLLR----AVGP-DFSVFCGDDE--L----LLPALAAGADGF  202 (289)
T ss_dssp             STSHHHHHHHHH----T-STTEEEEEESSSB--HHHHHHHHH----HSST-TSEEEESSGG--G----HHHHHHTTSSEE
T ss_pred             cCCCHHHHHHHh----c-CCcEEEEEcCchh--HHHHHHHhh----hccc-Ceeeeccccc--c----ccccccccCCEE
Confidence            234555555444    4 3579999998874  344444333    3333 243 344222  2    357778897643

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=87.87  E-value=9.3  Score=37.59  Aligned_cols=124  Identities=18%  Similarity=0.117  Sum_probs=66.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ecCCCCC--CCCH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VGCPVEG--AIPP  302 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g~p~~~--r~d~  302 (452)
                      +.++.+.++|.+.|-+.....+.+. ...+++.+    .+..+-+.+++.|+++.. ++..      ++.++..  +...
T Consensus        25 e~~~~~~~~G~~~iEl~~~~~~~~~-~~~~~~~~----~~~~l~~~l~~~gl~i~~-~~~~~~~~~~~~~~~~~~r~~~~   98 (283)
T PRK13209         25 EKLAIAKTAGFDFVEMSVDESDERL-ARLDWSRE----QRLALVNALVETGFRVNS-MCLSAHRRFPLGSEDDAVRAQAL   98 (283)
T ss_pred             HHHHHHHHcCCCeEEEecCccccch-hccCCCHH----HHHHHHHHHHHcCCceeE-EecccccccCCCCCCHHHHHHHH
Confidence            4788899999999998754321110 11223332    344566778889999753 2211      1111100  0112


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCc---CCCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCcCc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTYGQ  360 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~---G~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~Gl  360 (452)
                      +.+.+.++.+.++|++.|.+.--.   +.-.+.....++..++...     -++.|.+|.|.+.-+
T Consensus        99 ~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~  164 (283)
T PRK13209         99 EIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFM  164 (283)
T ss_pred             HHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCccc
Confidence            356678888899999999885111   1112333333333333321     246799998865433

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=87.82  E-value=14  Score=37.13  Aligned_cols=163  Identities=16%  Similarity=0.149  Sum_probs=82.2

Q ss_pred             CCHHHHHHHHHHHHHCC-CCEEEEec--CCCCC-cccccCCHHHHHHHHHhccC-CceeEEe---cchhhhhhhhhhhhh
Q 012949          145 VPTGVKVELIRRLVSSG-LPVVEATS--FVSPK-WVPQLADARDVMEAVRDLEG-ARLPVLT---PNLKVILQRSILFQQ  216 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~G-v~~IEvG~--~~s~~-~~p~~~D~e~v~~~i~~~~~-~~l~~l~---~~~~~~i~r~~~~~~  216 (452)
                      .+.++-.+.++.+.++| ++.||+-.  |..+. ...-..+.+.+.+.++.+.. +.+++++   ++..           
T Consensus       101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~-----------  169 (301)
T PRK07259        101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT-----------  169 (301)
T ss_pred             CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch-----------
Confidence            36889999999999999 99999953  22111 00011244444444444322 1333333   2111           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHH--Hh-------hhc-CCCHHHHHHHHHHHHHHHHh-CCCcEE
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF--SK-------SNI-NCSIEDSLVRYRAVAHAAKV-LSIPVR  285 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~--~~-------~~~-~~s~e~~l~~~~~~v~~Ak~-~G~~V~  285 (452)
                         +        ..+-++.+.++|++.|.++.......  ..       ... +.+-........+.++.+++ .+++|.
T Consensus       170 ---~--------~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi  238 (301)
T PRK07259        170 ---D--------IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPII  238 (301)
T ss_pred             ---h--------HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEE
Confidence               0        01245677789999887753221100  00       000 01100000111233344444 366654


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                      +     .    .+-.+++.+.++.    .+|||.|.++=..=. .|.-+.++.+.+.+
T Consensus       239 ~-----~----GGI~~~~da~~~l----~aGAd~V~igr~ll~-~P~~~~~i~~~l~~  282 (301)
T PRK07259        239 G-----M----GGISSAEDAIEFI----MAGASAVQVGTANFY-DPYAFPKIIEGLEA  282 (301)
T ss_pred             E-----E----CCCCCHHHHHHHH----HcCCCceeEcHHHhc-CcHHHHHHHHHHHH
Confidence            1     1    2344666666554    469998888655433 67777777666644

>PRK09490 metH B12-dependent methionine synthase; Provisional

Probab=87.70  E-value=75  Score=38.64  Aligned_cols=251  Identities=16%  Similarity=0.140  Sum_probs=0.0

Q ss_pred             CccccCCCCCCC-CCHHHHHHH----HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCC------ceeEEe
Q 012949          133 GPRDGLQNEKNT-VPTGVKVEL----IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA------RLPVLT  201 (452)
Q Consensus       133 TLRDG~Q~~~~~-~~~~~k~~i----~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~------~l~~l~  201 (452)
                      +++.+.-.++.. ++.++..+.    ++.|.+.|+|.|-+         -.+.|..+...++..+...      .+++++
T Consensus       144 sl~p~~e~pg~~~it~del~~~y~eQi~~L~e~GVDllli---------ETi~d~~EakAal~a~~~~~~~~~~~lPv~v  214 (1229)
T PRK09490        144 SISPDVNDPGFRNVTFDELVAAYREQTRGLIEGGADLILI---------ETIFDTLNAKAAIFAVEEVFEELGVRLPVMI  214 (1229)
T ss_pred             ccCCCcccccccCCCHHHHHHHHHHHHHHHHhCCCCEEEE---------eeeCCHHHHHHHHHHHHHHHhhcCCCCeEEE


Q ss_pred             cchhhhhhhhhhhhh-ccchhhhhhhhccHHhHHHHH----HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          202 PNLKVILQRSILFQQ-CHASVISSNLWVYLQGFEAAI----AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~-~~~~~i~~~~~~~~~~ie~a~----~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                               .+++.+ ......++       +++.+.    ..+++.|.+-++..+               +.+..+++.
T Consensus       215 ---------S~T~~d~~Gr~lsG~-------~~ea~~~~l~~~~~~avGlNCs~GP---------------~~m~~~l~~  263 (1229)
T PRK09490        215 ---------SGTITDASGRTLSGQ-------TTEAFWNSLRHAKPLSIGLNCALGA---------------DELRPYVEE  263 (1229)
T ss_pred             ---------EEEEECCCCccCCCC-------cHHHHHHHHhcCCCCEEEEcCCCcH---------------HHHHHHHHH


Q ss_pred             HHhCCCcEEEEEEeeecCCCCC---CCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEG---AIPPSKVAYVAKELHDMG-CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~---r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      ..+.. ..-..+--.-|-|...   ..+|+.+.+.++.+.+.| +..|.=|=   .-+|+.++.+.+.++..-|......
T Consensus       264 l~~~~-~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~v~IIGGCC---GTtPeHI~ala~~l~~~~p~~~~~~  339 (1229)
T PRK09490        264 LSRIA-DTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGFLNIVGGCC---GTTPEHIAAIAEAVAGLPPRKLPEI  339 (1229)
T ss_pred             HHHhc-CCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEecC---CCCHHHHHHHHHHHhcCCCCCCCCc


Q ss_pred             EeC--------------------------------------CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCC
Q 012949          353 HLH--------------------------------------DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASG  394 (452)
Q Consensus       353 H~H--------------------------------------nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graG  394 (452)
                      ..+                                      .|+.-++.-+..-+++||++||+.+ |...      ..+
T Consensus       340 ~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA~iIDVn~-g~~~------id~  412 (1229)
T PRK09490        340 PVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGAQIIDINM-DEGM------LDS  412 (1229)
T ss_pred             CcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCH


Q ss_pred             cccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949          395 NVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRPS  434 (452)
Q Consensus       395 NaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g~~~  434 (452)
                      -..++.++..+..    ..+..-||..+-.-+..-++.+-|.++
T Consensus       413 ~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~I  456 (1229)
T PRK09490        413 EAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGI  456 (1229)
T ss_pred             HHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCE

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=87.63  E-value=11  Score=38.04  Aligned_cols=125  Identities=14%  Similarity=0.037  Sum_probs=76.2

Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      -+.|+.+|-...|-+--...+.++.|.-.-. ...+.+.++++.+|+.  ..++.+  .      ..   +.    +-++
T Consensus       139 ~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~-g~~~~i~~av~~~r~~~~~~kIeV--E------v~---tl----eea~  202 (277)
T TIGR01334       139 AVKAVLAAGGVIHRIGLSETLLVFANHRTFL-NDNFDWGGAIGRLKQTAPERKITV--E------AD---TI----EQAL  202 (277)
T ss_pred             HHHHHHhCCCcCeecCCchhheehHHHHHHh-CCcccHHHHHHHHHHhCCCCCEEE--E------CC---CH----HHHH
Confidence            3567788877666654434444444320000 0001344556666664  333432  1      11   22    4555


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ++.++|+|.|.| |   -++|+++.+.++.+++..|...|++=.    |.-..|..+=...|+|+|-++-.
T Consensus       203 ea~~~GaDiI~l-D---n~~~e~l~~~v~~l~~~~~~~~leasG----GI~~~ni~~ya~~GvD~is~gal  265 (277)
T TIGR01334       203 TVLQASPDILQL-D---KFTPQQLHHLHERLKFFDHIPTLAAAG----GINPENIADYIEAGIDLFITSAP  265 (277)
T ss_pred             HHHHcCcCEEEE-C---CCCHHHHHHHHHHHhccCCCEEEEEEC----CCCHHHHHHHHhcCCCEEEeCcc
Confidence            667899999998 5   589999999999987656665566643    56667777777899999866543

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR01431 adm_rel adenosine deaminase-related growth factor

Probab=87.58  E-value=19  Score=39.17  Aligned_cols=145  Identities=12%  Similarity=0.049  Sum_probs=90.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +-++.+.+-|+..+-+.......+.....+.+.++.++.+.+.++.+++..- -+.+.+.+..   . -..+++.+.+.+
T Consensus       201 ~~l~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~---~-R~~~~~~~~~~~  276 (479)
T TIGR01431       201 RALEEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSP---L-RNKDKEELDNYI  276 (479)
T ss_pred             HHHHHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---c-CCCCHHHHHHHH
Confidence            4667778889988888776555554444556889999999999988877542 1333344321   1 124667666666


Q ss_pred             HHHHHC---CcC-EEEEcCCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeCCCc--Cc-HHHHHHHHHHcCCCEEee
Q 012949          310 KELHDM---GCF-EISLGDTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLHDTY--GQ-SLPNILISLQMGISTVDC  378 (452)
Q Consensus       310 ~~l~~~---Gad-~I~L~DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~Hnd~--Gl-A~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.++   -.+ .+.+ |-+|-=    .|....+.+..+++. .++++.+|+=.+.  |. .-.|...||..|+++|.=
T Consensus       277 ~~a~~~k~~~p~~vvGf-DL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGH  354 (479)
T TIGR01431       277 KVAMELKEKYPDFVAGF-DLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGH  354 (479)
T ss_pred             HHHHHHHhhCCCeEEEE-eccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccC
Confidence            665543   233 3333 776642    234444444433432 3468999998776  43 347999999999999854


Q ss_pred             ccc
Q 012949          379 SVA  381 (452)
Q Consensus       379 Sv~  381 (452)
                      .+.
T Consensus       355 G~~  357 (479)
T TIGR01431       355 GFA  357 (479)
T ss_pred             ccc
Confidence            443

Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=87.55  E-value=8.4  Score=39.57  Aligned_cols=72  Identities=15%  Similarity=0.156  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ...+.++.+.++|++.|.+ |+.. ..+..+.++|+.+++.+|.++|.+  +|-  .....+..++++|||.|-+.+.
T Consensus        94 ~~~~~~~~l~eagv~~I~v-d~~~-G~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g  165 (325)
T cd00381          94 DDKERAEALVEAGVDVIVI-DSAH-GHSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG  165 (325)
T ss_pred             hHHHHHHHHHhcCCCEEEE-ECCC-CCcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence            3456788889999998887 4322 345788899999999988655555  222  4456778889999999987553

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK09057 coproporphyrinogen III oxidase; Provisional

Probab=87.50  E-value=27  Score=36.44  Aligned_cols=86  Identities=17%  Similarity=0.035  Sum_probs=56.7

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+.++...++|+.+|.+-+ +.+|-. ...+|+.  ...+.+.++++.+++.+..|.+.++  +|.|..   +.+.+.+-
T Consensus       104 ~e~L~~l~~~GvnrislGvQS~~d~v-L~~l~R~--~~~~~~~~ai~~~~~~~~~v~~dli--~GlPgq---t~~~~~~~  175 (380)
T PRK09057        104 AGRFRGYRAAGVNRVSLGVQALNDAD-LRFLGRL--HSVAEALAAIDLAREIFPRVSFDLI--YARPGQ---TLAAWRAE  175 (380)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHH-HHHcCCC--CCHHHHHHHHHHHHHhCccEEEEee--cCCCCC---CHHHHHHH
Confidence            3578888999999998877 334432 2233332  1233444566778888877776666  566655   35666667


Q ss_pred             HHHHHHCCcCEEEEc
Q 012949          309 AKELHDMGCFEISLG  323 (452)
Q Consensus       309 a~~l~~~Gad~I~L~  323 (452)
                      ++.+.+.+++.|.+-
T Consensus       176 l~~~~~l~p~~is~y  190 (380)
T PRK09057        176 LKEALSLAADHLSLY  190 (380)
T ss_pred             HHHHHhcCCCeEEee
Confidence            777788899877765

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=87.46  E-value=3.9  Score=41.06  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=70.8

Q ss_pred             CCCCCHHHHHHHHHHHHH-CCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHH
Q 012949          297 EGAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQ  370 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~  370 (452)
                      .+..|.+-+.++++.+.+ .|++.|.++-|+|=   ++.++-.++++.+++..++ ++|-++. +++.--++..+..|-+
T Consensus        18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~   97 (293)
T PRK04147         18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE   97 (293)
T ss_pred             CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999 99999999999885   7788888888888887754 5677777 7788888999999999


Q ss_pred             cCCCEEeecc
Q 012949          371 MGISTVDCSV  380 (452)
Q Consensus       371 aGa~~VD~Sv  380 (452)
                      +||+.|=..-
T Consensus        98 ~Gad~v~v~~  107 (293)
T PRK04147         98 LGYDAISAVT  107 (293)
T ss_pred             cCCCEEEEeC
Confidence            9999876553

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=87.41  E-value=4.9  Score=43.46  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=13.4

Q ss_pred             CChhhHHHHHHHHHHHhCCCCC
Q 012949          414 VDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       414 iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      .....+.++...+.+.+++|+.
T Consensus       179 l~P~~v~~Lv~~lk~~~~vpI~  200 (467)
T PRK14041        179 LTPKRAYELVKALKKKFGVPVE  200 (467)
T ss_pred             cCHHHHHHHHHHHHHhcCCceE
Confidence            4456666777777666655443

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=87.39  E-value=34  Score=34.31  Aligned_cols=104  Identities=15%  Similarity=0.122  Sum_probs=66.7

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC--cCEEEEc----CCc--C---CCc
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLG----DTI--G---VGT  330 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G--ad~I~L~----DT~--G---~~~  330 (452)
                      ..+..++.+..   ..++.+.++.+.|.   |      .+++.+.+.++.+.+++  +|.|.|.    -+.  |   ...
T Consensus        74 g~~~~~~~~~~---~~~~~~~pl~~qi~---g------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~  141 (300)
T TIGR01037        74 GVEAFLEELKP---VREEFPTPLIASVY---G------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQD  141 (300)
T ss_pred             CHHHHHHHHHH---HhccCCCcEEEEee---c------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccC
Confidence            45555554433   33455666655553   1      35789999999998764  7877663    111  1   247


Q ss_pred             HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          331 PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       331 P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      |+.+.++++.+++.++ .+|.+-.-.+.--...-+..+.++|++.|.+
T Consensus       142 ~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v  188 (300)
T TIGR01037       142 PELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAAEEAGADGLTL  188 (300)
T ss_pred             HHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence            8999999999999874 4677765433333444555677899998864

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=87.13  E-value=6  Score=39.06  Aligned_cols=176  Identities=19%  Similarity=0.261  Sum_probs=87.2

Q ss_pred             HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.+.+..+|.+.+-+..- +....-+   +.+.+++.++.   .++. +.||..        -.+..++.++       
T Consensus        23 ~m~~ai~aSg~evvTvalRR~~~~~~~---~~~~~~~~i~~---~~~~-lLPNTa--------Gc~tA~EAv~-------   80 (247)
T PF05690_consen   23 VMREAIEASGAEVVTVALRRVNLGSKP---GGDNILDYIDR---SGYT-LLPNTA--------GCRTAEEAVR-------   80 (247)
T ss_dssp             HHHHHHHHTT-SEEEEECCGSTTTS-T---TCHHCCCCTTC---CTSE-EEEE-T--------T-SSHHHHHH-------
T ss_pred             HHHHHHHHhCCcEEEEEEecccCCCCC---CCccHHHHhcc---cCCE-ECCcCC--------CCCCHHHHHH-------
Confidence            3556788899999988753 1111000   12344444432   2222 345543        1112222211       


Q ss_pred             HhHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                       -.+.|.+. +.++|.+-+-..+..+.       .+.++.+ ++.+...+.|+.|..|+.     +        ++ -++
T Consensus        81 -~A~laRe~~~t~wIKLEVi~D~~~L~-------PD~~etl-~Aae~Lv~eGF~VlPY~~-----~--------D~-v~a  137 (247)
T PF05690_consen   81 -TARLAREAFGTNWIKLEVIGDDKTLL-------PDPIETL-KAAEILVKEGFVVLPYCT-----D--------DP-VLA  137 (247)
T ss_dssp             -HHHHHHHTTS-SEEEE--BS-TTT---------B-HHHHH-HHHHHHHHTT-EEEEEE------S---------H-HHH
T ss_pred             -HHHHHHHHcCCCeEEEEEeCCCCCcC-------CChhHHH-HHHHHHHHCCCEEeecCC-----C--------CH-HHH
Confidence             33455554 78899987655543221       2333333 233444467999987664     1        11 388


Q ss_pred             HHHHHCCcCEEE-EcCCc----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH-HHHHHHHcCCC--EEeeccc
Q 012949          310 KELHDMGCFEIS-LGDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP-NILISLQMGIS--TVDCSVA  381 (452)
Q Consensus       310 ~~l~~~Gad~I~-L~DT~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A-NaLaAl~aGa~--~VD~Sv~  381 (452)
                      +++.++||..|. ++-.+    |+.+|..++.+++    +++ +|+-+    |-|++.+ -+-.|++.|+|  .|+++|.
T Consensus       138 krL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~----~~~-vPvIv----DAGiG~pSdaa~AMElG~daVLvNTAiA  208 (247)
T PF05690_consen  138 KRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIE----RAD-VPVIV----DAGIGTPSDAAQAMELGADAVLVNTAIA  208 (247)
T ss_dssp             HHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHH----HGS-SSBEE----ES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             HHHHHCCCCEEEecccccccCcCCCCHHHHHHHHH----hcC-CcEEE----eCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence            999999998665 44444    5566665555544    442 34555    5577754 67889999999  5588887

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=87.06  E-value=43  Score=37.35  Aligned_cols=166  Identities=18%  Similarity=0.167  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.+++.-++=+..|.++|.+.+-++.       |.+.+++.+....+.+  .+..++. +...-        |..     
T Consensus        37 T~D~~atv~Qi~~l~~aGceiVRvtv-------~~~~~a~~l~~I~~~l~~~G~~iPL-VADIH--------F~~-----   95 (611)
T PRK02048         37 TMDTEACVAQAKRIIDAGGEYVRLTT-------QGVREAENLMNINIGLRSQGYMVPL-VADVH--------FNP-----   95 (611)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHHhHHHHHHHHhhcCCCCCE-EEecC--------CCc-----
Confidence            45677778888999999999999975       4444444333333332  2223221 11111        110     


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHH----------HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF----------SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~----------~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                               +-...|++. ++.|||--. |=..          ....+....+..-+++..+++.||++|..++.-+-  
T Consensus        96 ---------~~A~~a~~~-v~kiRINPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--  162 (611)
T PRK02048         96 ---------KVADVAAQY-AEKVRINPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--  162 (611)
T ss_pred             ---------HHHHHHHHh-hCCEEECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--
Confidence                     122345556 888888421 1000          00111122334446777899999999999984332  


Q ss_pred             ecCCCC---CC--CCHHHHH----HHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          292 VGCPVE---GA--IPPSKVA----YVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       292 ~g~p~~---~r--~d~e~l~----~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                      .|+-..   .+  .+|+-++    +.++.+.+.|-+  .|+++-|.-..+-...+.++..+.+
T Consensus       163 ~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~  225 (611)
T PRK02048        163 HGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEA  225 (611)
T ss_pred             CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHh
Confidence            222110   11  1444333    356677778865  6677777654444445555555543

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=86.99  E-value=37  Score=34.37  Aligned_cols=183  Identities=15%  Similarity=0.156  Sum_probs=105.3

Q ss_pred             CHHHHHHHHHHHH----HCCCCEEEEecCC-----CCCcc--cccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhh
Q 012949          146 PTGVKVELIRRLV----SSGLPVVEATSFV-----SPKWV--PQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILF  214 (452)
Q Consensus       146 ~~~~k~~i~~~L~----~~Gv~~IEvG~~~-----s~~~~--p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~  214 (452)
                      +.++..++++.|.    ++|++.+==|+|-     ||.-+  |.+.+.-++++.+++-.++  ++++--.          
T Consensus        28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~Gl--pvvTeV~----------   95 (281)
T PRK12457         28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGV--PVITDVH----------   95 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--ceEEEeC----------
Confidence            5688889999876    5999887666542     33211  2221223344444443343  3333211          


Q ss_pred             hhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC
Q 012949          215 QQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC  294 (452)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~  294 (452)
                                    ..++++.+.+. +|.+.|-.-.     ..+            -++++.+.+.|..|-  |--    
T Consensus        96 --------------~~~~~~~~ae~-vDilQIgAr~-----~rn------------tdLL~a~~~t~kpV~--lKr----  137 (281)
T PRK12457         96 --------------EVEQAAPVAEV-ADVLQVPAFL-----ARQ------------TDLVVAIAKTGKPVN--IKK----  137 (281)
T ss_pred             --------------CHHHHHHHhhh-CeEEeeCchh-----hch------------HHHHHHHhccCCeEE--ecC----
Confidence                          12377777777 8999886531     111            155566667777664  221    


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC---cCCCc-HHHHHHHHHHHHHhCCCccEEE---Ee-----------CC
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEISLGDT---IGVGT-PGTVVPMLEAVMAVVPVEKLAV---HL-----------HD  356 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT---~G~~~-P~~v~~li~~l~~~~p~~~l~v---H~-----------Hn  356 (452)
                        .--.+++.+...++.+...|...|.||.=   .|+-. +.++.. |..+++..+..||-+   |.           =-
T Consensus       138 --Gqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G  214 (281)
T PRK12457        138 --PQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGG  214 (281)
T ss_pred             --CCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCC
Confidence              11145788888999999999998888862   12211 122222 344555434444544   54           23


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ++-+....+.+|+.+|||.+=.=+-
T Consensus       215 ~re~v~~larAAvA~GaDGl~iEvH  239 (281)
T PRK12457        215 RRRQVLDLARAGMAVGLAGLFLEAH  239 (281)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEec
Confidence            4456788899999999995544333

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=86.95  E-value=11  Score=39.18  Aligned_cols=76  Identities=12%  Similarity=0.092  Sum_probs=51.6

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      .+++.+.+.++.+.+.|+.+|.|. + |-    ..++.+.++++.+++.+|.+.+++.     -+...-...-.++|++.
T Consensus       103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r  175 (366)
T TIGR02351       103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG  175 (366)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence            378888888988889999988887 2 32    3356788888888888875443331     14333333344689988


Q ss_pred             EeecccC
Q 012949          376 VDCSVAG  382 (452)
Q Consensus       376 VD~Sv~G  382 (452)
                      +...+--
T Consensus       176 ~~i~lET  182 (366)
T TIGR02351       176 VTVYQET  182 (366)
T ss_pred             EEEEeec
Confidence            7765554

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=86.91  E-value=7.7  Score=37.63  Aligned_cols=68  Identities=15%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcH----HHHHHHHHHcCCCEEeecc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQS----LPNILISLQMGISTVDCSV  380 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA----~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+-.+++.++|++.|.+ |-+---.|. .+.++++.  .++|+         -+=||    +.-.+.|..+|+|.|-+|+
T Consensus        88 lkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~---------~l~MAD~St~ee~l~a~~~G~D~IGTTL  155 (229)
T COG3010          88 LKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPG---------QLAMADCSTFEEGLNAHKLGFDIIGTTL  155 (229)
T ss_pred             HHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCC---------cEEEeccCCHHHHHHHHHcCCcEEeccc
Confidence            34556788899999999 766677887 77777776  33443         33333    5677889999999999999


Q ss_pred             cCCCC
Q 012949          381 AGLGG  385 (452)
Q Consensus       381 ~GlGe  385 (452)
                      .|+=+
T Consensus       156 sGYT~  160 (229)
T COG3010         156 SGYTG  160 (229)
T ss_pred             ccccC
Confidence            99865

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=86.71  E-value=40  Score=40.73  Aligned_cols=118  Identities=18%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHHHHHC-CcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCc--------------cEEEEe---------
Q 012949          300 IPPSKVAYVAKELHDM-GCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVE--------------KLAVHL---------  354 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~-Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~--------------~l~vH~---------  354 (452)
                      .+|+.+.+.++.+.+. |+..|. -|-|    +|+.++.+-+.++..-|..              .+.+.-         
T Consensus       273 ~~p~~~a~~~~~~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGE  348 (1178)
T TIGR02082       273 LTPDELAKALADFAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGE  348 (1178)
T ss_pred             CCHHHHHHHHHHHHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEee
Confidence            4688888888888887 588776 3344    9999999988886432310              111110         


Q ss_pred             ---------------CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC----CCCCCCC
Q 012949          355 ---------------HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL----GVETNVD  415 (452)
Q Consensus       355 ---------------Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~----Gi~t~iD  415 (452)
                                     -.|+.-++.-+..-+++||++||+.+. ...      ..+-..++.++..+...    .+...||
T Consensus       349 r~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA~iIDVn~~-~~~------vd~~eem~rvv~~i~~~~~~~~vPlsID  421 (1178)
T TIGR02082       349 RTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGAQILDINVD-YGM------LDGVAAMKRFLNLLASEPDISTVPLMLD  421 (1178)
T ss_pred             ccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCCCEEEECCC-CCC------CCHHHHHHHHHHHHHhccCCCCCeEEEe
Confidence                           022334556666777999999999864 222      44555666666666532    3434567


Q ss_pred             hhhHHHHHHHHHH
Q 012949          416 LRKLMLAGDFINK  428 (452)
Q Consensus       416 l~~L~~la~~v~~  428 (452)
                      ..+-.-+..-++.
T Consensus       422 S~~~~v~eaaLk~  434 (1178)
T TIGR02082       422 SSEWAVLEAGLKC  434 (1178)
T ss_pred             CCcHHHHHHHHHh
Confidence            6665554444444

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=86.69  E-value=8.4  Score=37.94  Aligned_cols=107  Identities=21%  Similarity=0.280  Sum_probs=69.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-CHHHHHHHHHHHHHCCcCEEEEcCC-cC-----CCcHHH
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAKELHDMGCFEISLGDT-IG-----VGTPGT  333 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~-d~e~l~~~a~~l~~~Gad~I~L~DT-~G-----~~~P~~  333 (452)
                      .|.+|.++.++++++..   .++|.+-+-       .+-- ++..+.+.++.+.++|+..|.|-|. .|     +..+++
T Consensus        52 lt~~e~~~~~~~I~~~~---~iPv~vD~d-------~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee  121 (238)
T PF13714_consen   52 LTLTEMLAAVRRIARAV---SIPVIVDAD-------TGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEE  121 (238)
T ss_dssp             S-HHHHHHHHHHHHHHS---SSEEEEE-T-------TTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHH
T ss_pred             CCHHHHHHHHHHHHhhh---cCcEEEEcc-------cccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHH
Confidence            35677777766665544   677764443       2322 4899999999999999999999999 34     457788


Q ss_pred             HHHHHHHHHHhCCCccEEEEeCCC--------cCcHHHHHHHHHHcCCCEEe
Q 012949          334 VVPMLEAVMAVVPVEKLAVHLHDT--------YGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       334 v~~li~~l~~~~p~~~l~vH~Hnd--------~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ..+.|++.++...+..+-+=.--|        +--|+.-+.+-.+||||.|=
T Consensus       122 ~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~if  173 (238)
T PF13714_consen  122 MVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIF  173 (238)
T ss_dssp             HHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEE
T ss_pred             HHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            888888888765332233333322        23456677778899999663

...

>PRK06582 coproporphyrinogen III oxidase; Provisional

Probab=86.66  E-value=25  Score=36.97  Aligned_cols=85  Identities=15%  Similarity=0.033  Sum_probs=57.5

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~--s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.+-+..-+-.....+|+  +.++++    ++++.+++.+..|.+.++  +|-|-.   +.+.+.+
T Consensus       111 ~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lgR~h~~~~~~----~ai~~~~~~~~~v~~DlI--~GlPgq---t~e~~~~  181 (390)
T PRK06582        111 TEKFKAFKLAGINRVSIGVQSLKEDDLKKLGRTHDCMQAI----KTIEAANTIFPRVSFDLI--YARSGQ---TLKDWQE  181 (390)
T ss_pred             HHHHHHHHHCCCCEEEEECCcCCHHHHHHcCCCCCHHHHH----HHHHHHHHhCCcEEEEee--cCCCCC---CHHHHHH
Confidence            45788888999999998874433233333444  444444    556777777667776676  566654   3677777


Q ss_pred             HHHHHHHCCcCEEEEc
Q 012949          308 VAKELHDMGCFEISLG  323 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~  323 (452)
                      -++.+.+.+++.|.+=
T Consensus       182 ~l~~~~~l~p~his~y  197 (390)
T PRK06582        182 ELKQAMQLATSHISLY  197 (390)
T ss_pred             HHHHHHhcCCCEEEEe
Confidence            8888888898877663

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=86.51  E-value=16  Score=36.83  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=56.1

Q ss_pred             hHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++..++.| ++.|-+.-+..|.     ...|.+|-.+.++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~i~~~i~~G~v~gi~~~GstGE~-----~~Lt~eEr~~~~~~~~~~~~~-~~pvi~gv---------~~~~t~~~i~la~   90 (290)
T TIGR00683        26 IIRHNIDKMKVDGLYVGGSTGEN-----FMLSTEEKKEIFRIAKDEAKD-QIALIAQV---------GSVNLKEAVELGK   90 (290)
T ss_pred             HHHHHHhCCCcCEEEECCccccc-----ccCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHH
Confidence            667777888 8888777666664     234666666655555555432 23443222         1234566667777


Q ss_pred             HHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhC
Q 012949          311 ELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~  345 (452)
                      .+.+.|+|.|.+.=. .-..+++++.+.++.+.+..
T Consensus        91 ~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~  126 (290)
T TIGR00683        91 YATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET  126 (290)
T ss_pred             HHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhC
Confidence            777777775555222 22234566666666665444

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=86.40  E-value=4  Score=35.44  Aligned_cols=77  Identities=13%  Similarity=0.043  Sum_probs=43.6

Q ss_pred             HHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          274 AHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       274 v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      ++.+++.|++...++-     |+....+.-....+.+.+.++|...+.++=+.+-.+++.+..+.+.+.+ .|. |+-+|
T Consensus        20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h   92 (110)
T PF04273_consen   20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH   92 (110)
T ss_dssp             HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred             HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence            3567789999775553     4432222223444667778899999999999999999999998877765 565 67677


Q ss_pred             eCCC
Q 012949          354 LHDT  357 (452)
Q Consensus       354 ~Hnd  357 (452)
                      |...
T Consensus        93 C~sG   96 (110)
T PF04273_consen   93 CRSG   96 (110)
T ss_dssp             -SCS
T ss_pred             CCCC
Confidence            6654

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=86.36  E-value=11  Score=36.16  Aligned_cols=118  Identities=15%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--CCCH-HHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--AIPP-SKVAYV  308 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r~d~-e~l~~~  308 (452)
                      .++.+.+.|++.+.+......               +.+..+++.+++.|..+.+-..  .+++...  ..+. +.+.++
T Consensus        68 ~~~~~~~~gad~vTvh~~~g~---------------~~l~~~~~~~~~~~~~v~~v~~--lss~~~~~~~~~~~~~v~~~  130 (213)
T TIGR01740        68 QYESKIKQGADMVNVHGVAGS---------------ESVEAAKEAASEGGRGLLAVTE--LTSMGSLDYGEDTMEKVLEY  130 (213)
T ss_pred             HHHHHHhcCCCEEEEcCCCCH---------------HHHHHHHHHhhcCCCeEEEEEc--CCCCChhhhCcCHHHHHHHH
Confidence            456678899999998765443               4455677777877755432221  1223221  2223 566777


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh----CCCccEEEEeC-CCcCcHHHHHHHHHHcCCCEE
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV----VPVEKLAVHLH-DTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~----~p~~~l~vH~H-nd~GlA~ANaLaAl~aGa~~V  376 (452)
                      ++...+.|.+.+.       ..|..+..+ +.+...    .|+  |....= .+-..-++|.-.+.++||+.+
T Consensus       131 a~~~~~~g~~g~v-------~~~~~~~~i-r~~~~~~~~vtPG--I~~~g~~~~dq~~~~~~~~~~~~Gad~i  193 (213)
T TIGR01740       131 AKEAKAFGLDGPV-------CSAEEAKEI-RKFTGDFLILTPG--IRLQSKGADDQQRVVTLEDAKEAGADVI  193 (213)
T ss_pred             HHHhhhcCCeEEE-------eCHHHHHHH-HHhcCCceEEeCC--cCCCCCCcCCccccCCHHHHHHcCCCEE
Confidence            7777777776442       345554443 222111    244  222221 223345678888899999966

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=86.33  E-value=12  Score=37.96  Aligned_cols=119  Identities=18%  Similarity=0.150  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCC-CcHHHHHHHHHHHHHh
Q 012949          268 VRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGV-GTPGTVVPMLEAVMAV  344 (452)
Q Consensus       268 ~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~-~~P~~v~~li~~l~~~  344 (452)
                      ..+.++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.++. .|.+... ..+ ..+..+..++..+.++
T Consensus         4 v~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~   73 (288)
T TIGR00167         4 VDVKELLQDAKEEGYAIPA-----FN-----INNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEA   73 (288)
T ss_pred             ccHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHh
Confidence            3456788999999987752     21     13578888899999998877 4444332 222 3366778888877777


Q ss_pred             CC-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          345 VP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       345 ~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      .+ .+|+.+|  =|.|.-......|+++|.+  ++|+|-..+-+         | .-|-+++...+.
T Consensus        74 ~~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~  129 (288)
T TIGR00167        74 YPYGVPVALH--LDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE---------NIELTKKVVERAHK  129 (288)
T ss_pred             ccCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            62 3466655  4777788999999999998  77999876655         4 344555555553

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=86.27  E-value=4.5  Score=41.67  Aligned_cols=107  Identities=11%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCc-CCCcH---HHHHHHHHHH
Q 012949          267 LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTI-GVGTP---GTVVPMLEAV  341 (452)
Q Consensus       267 l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P---~~v~~li~~l  341 (452)
                      +-.+.++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. .|.+.... .+..+   ..+...+..+
T Consensus         9 lv~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~   78 (321)
T PRK07084          9 LVNTREMFAKAVKGGYAIPA-----YN-----FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY   78 (321)
T ss_pred             ccCHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence            45567888999999987752     21     23578888899999998876 55554433 22222   2233344444


Q ss_pred             HHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949          342 MAVVP-VEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  385 (452)
Q Consensus       342 ~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  385 (452)
                      .++.. .+|+.+|.  |.|.-......|+++|.+  ++|+|-..+-+
T Consensus        79 a~~a~~~VPV~lHL--DHg~~~e~i~~ai~~GftSVMiD~S~lp~ee  123 (321)
T PRK07084         79 AKELGCPIPIVLHL--DHGDSFELCKDCIDSGFSSVMIDGSHLPYEE  123 (321)
T ss_pred             HHHcCCCCcEEEEC--CCCCCHHHHHHHHHcCCCEEEeeCCCCCHHH
Confidence            44442 34666655  667778899999999998  77998765444

>PLN02433 uroporphyrinogen decarboxylase

Probab=86.20  E-value=4.8  Score=41.47  Aligned_cols=72  Identities=15%  Similarity=0.041  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHCCcCEEEEcC-CcCCCcHHHHHHHHH--------HHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          303 SKVAYVAKELHDMGCFEISLGD-TIGVGTPGTVVPMLE--------AVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~li~--------~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      +.+.++++...++||+.|.+.| +.|.++|+...+++.        .+++..+..++.+|.+.+.    ...-.-.+.|+
T Consensus       179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~  254 (345)
T PLN02433        179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV  254 (345)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC


Q ss_pred             CEEee
Q 012949          374 STVDC  378 (452)
Q Consensus       374 ~~VD~  378 (452)
                      +.+..
T Consensus       255 ~~i~~  259 (345)
T PLN02433        255 DVIGL  259 (345)
T ss_pred             CEEEc

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=86.10  E-value=25  Score=31.50  Aligned_cols=178  Identities=19%  Similarity=0.124  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      +.-.++++.+.+.|++.++++... ++....  ....+.+..+....+..+.+-. .+..             .+..   
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~---   73 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDA-------------AAAV---   73 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCc-------------hhhh---
Confidence            567889999999999999999753 222111  1100123333322233222211 1000             0000   


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          ....+.+.++|.+.|.+-...-..             .+...+.++.+++.  ++.+...+..     ..   +.+
T Consensus        74 ----~~~a~~~~~~g~d~v~l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~  128 (200)
T cd04722          74 ----DIAAAAARAAGADGVEIHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELA  128 (200)
T ss_pred             ----hHHHHHHHHcCCCEEEEeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccc
Confidence                001247888999999887653211             12234455555654  6666543321     11   011


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCc----HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCEEee
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGISTVDC  378 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~----P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~VD~  378 (452)
                      ..     .+.++|++.|.+....+...    +......++.+++. +..++..    +-|... .+...++++||+.|.+
T Consensus       129 ~~-----~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v  198 (200)
T cd04722         129 AA-----AAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIV  198 (200)
T ss_pred             hh-----hHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence            10     16788999998866544321    11112334444443 3345554    446666 7888888999998865

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK09206 pyruvate kinase; Provisional

Probab=86.02  E-value=51  Score=35.80  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=137.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc--CCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE--GARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~--~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ++..++.. ++...+.|+|+|-+.|-.++      .|-+++.+.+....  .+.+.+-+-...                 
T Consensus       170 ltekD~~d-i~f~~~~~vD~ia~SFVr~~------~Dv~~~r~~l~~~~~~~~~iiaKIEt~e-----------------  225 (470)
T PRK09206        170 LAEKDKQD-LIFGCEQGVDFVAASFIRKR------SDVLEIREHLKAHGGENIQIISKIENQE-----------------  225 (470)
T ss_pred             CCHHHHHH-HHHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHcCCCCceEEEEECCHH-----------------
Confidence            66666666 47777999999988653332      23344444443321  222222222211                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee---ecCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV---VGCPVEGA  299 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~---~g~p~~~r  299 (452)
                            -.+.++..++. +|.|.|.  -.|.-.+    ...++......++++.|+++|.+|.+.-.+-   .-.|   +
T Consensus       226 ------av~nldeIl~~-~DgImVa--RGDLgve----lg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np---~  289 (470)
T PRK09206        226 ------GLNNFDEILEA-SDGIMVA--RGDLGVE----IPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNP---R  289 (470)
T ss_pred             ------HHHhHHHHHHh-CCEEEEC--cchhhhh----cCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---C
Confidence                  12345555555 7766553  3343222    2255666667789999999999975221110   1122   3


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCc---cEEEEe----C-CCcCcHHHHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVE---KLAVHL----H-DTYGQSLPNILISLQ  370 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~---~l~vH~----H-nd~GlA~ANaLaAl~  370 (452)
                      .+..++.+++....+ |+|.|.|. -|+=...|.+..+++..+..+.-..   .+..+.    | -...+|.+...+|..
T Consensus       290 PTRAEvsDVanav~d-G~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~ia~sa~~~A~~  368 (470)
T PRK09206        290 PTRAEAGDVANAILD-GTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLESNNDNRKLRITEAVCRGAVETAEK  368 (470)
T ss_pred             CCchhhHHHHHHhhh-CCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhhccccCCChHHHHHHHHHHHHhc
Confidence            345677778877665 89999994 4555668988887777776543210   011111    1 113355666667778


Q ss_pred             cCCC-EEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCCCC
Q 012949          371 MGIS-TVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSGSK  437 (452)
Q Consensus       371 aGa~-~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p~~  437 (452)
                      .+++ +|=.|-.|--.     + |-+|- -+.++-+.+...|.-. |+.+     .-|.+.+...+.......|.--+..
T Consensus       369 l~a~aIv~~T~sG~tA~~is~~RP~~pI-ia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~Gd  447 (470)
T PRK09206        369 LDAPLIVVATQGGKSARSVRKYFPDATI-LALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQKGD  447 (470)
T ss_pred             CCCCEEEEECCCcHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence            8887 55556655321     0 11111 2234556776666653 6543     2355555555544444566655555


Q ss_pred             ccc
Q 012949          438 TAI  440 (452)
Q Consensus       438 ~pi  440 (452)
                      .-+
T Consensus       448 ~vv  450 (470)
T PRK09206        448 VVV  450 (470)
T ss_pred             EEE
Confidence            444

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=85.94  E-value=9.8  Score=39.62  Aligned_cols=117  Identities=11%  Similarity=0.005  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC----cCCCcHH-----------
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT----IGVGTPG-----------  332 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT----~G~~~P~-----------  332 (452)
                      .+.++.+.|++.++-|-+     |.     -.+.+.+..+++.+.+++.. .|.+...    .+..+.+           
T Consensus         3 ~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~   72 (345)
T cd00946           3 DVLKLFDYAKENGFAIPA-----VN-----CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGA   72 (345)
T ss_pred             HHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhH
Confidence            456788999999987642     21     23678888899999999876 5555443    1222111           


Q ss_pred             -HHHHHHHHHHHhCCCccEEEEeCCCcCcH-----HH--------HHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-
Q 012949          333 -TVVPMLEAVMAVVPVEKLAVHLHDTYGQS-----LP--------NILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-  395 (452)
Q Consensus       333 -~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-----~A--------NaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-  395 (452)
                       .+..++..+.++++ +|+.+|.  |.|.-     ..        ....|+++|.+  ++|+|-..+-+         | 
T Consensus        73 ~~~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eE---------NI  140 (345)
T cd00946          73 IAAAHHVRSMAEHYG-VPVVLHT--DHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEE---------NI  140 (345)
T ss_pred             HHHHHHHHHHHHHCC-CCEEEEC--CCCCCccchhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHH---------HH
Confidence             57788888888775 4677665  44544     33        33445588987  88999887766         5 


Q ss_pred             ccHHHHHHHHHc
Q 012949          396 VATEDVVYMLSG  407 (452)
Q Consensus       396 aalE~vv~~L~~  407 (452)
                      .-|.+++...+.
T Consensus       141 ~~TkevVe~Ah~  152 (345)
T cd00946         141 EICKKYLERMAK  152 (345)
T ss_pred             HHHHHHHHHHHH
Confidence            445667666663

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=85.66  E-value=39  Score=35.74  Aligned_cols=163  Identities=17%  Similarity=0.072  Sum_probs=0.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCC------CcccccCCHHHHHHHHHhc-cCCceeEEe---cchhhhhhhhhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSP------KWVPQLADARDVMEAVRDL-EGARLPVLT---PNLKVILQRSILFQ  215 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~------~~~p~~~D~e~v~~~i~~~-~~~~l~~l~---~~~~~~i~r~~~~~  215 (452)
                      +.++-.++++.+.++|++.||+-.....      ....-..|.+.+.+.++.+ ..+.+++++   |+......      
T Consensus       111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~------  184 (420)
T PRK08318        111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIRE------  184 (420)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHH------


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--------------HHHhhhc-CCCHHHHHHHHHHHHHHHHhC
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--------------AFSKSNI-NCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--------------~~~~~~~-~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                                      -++.+.++|++.|.++.....              +|.+... +.|=.-......+.|..+++.
T Consensus       185 ----------------~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~  248 (420)
T PRK08318        185 ----------------PARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARD  248 (420)
T ss_pred             ----------------HHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhc


Q ss_pred             ----CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          281 ----SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       281 ----G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                          .+++.+         ..+-.+.+++.++..    +||+.|.++=..-.--|.-+.++++.+.+
T Consensus       249 ~~~~~ipIig---------~GGI~s~~da~e~i~----aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~  302 (420)
T PRK08318        249 PETRGLPISG---------IGGIETWRDAAEFIL----LGAGTVQVCTAAMQYGFRIVEDMISGLSH  302 (420)
T ss_pred             cccCCCCEEe---------ecCcCCHHHHHHHHH----hCCChheeeeeeccCCchhHHHHHHHHHH

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=85.63  E-value=41  Score=33.56  Aligned_cols=177  Identities=19%  Similarity=0.251  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++-|=+.-....  .+.+.+  ..++++.+.+..+-++++++    .+.+            
T Consensus        15 ~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE--~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~------------   80 (285)
T TIGR00674        15 SVDFAALEKLIDFQIENGTDAIVVVGTTGE--SPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATE------------   80 (285)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccCcc--cccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHH------------
Confidence            479999999999999999999887422211  133322  22333333222222333322    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +.        .+-.+.|.++|+|.|.+..+..       +.-+.++.++-+..+.+.   .+++|..|=     .|. 
T Consensus        81 --~~--------i~~a~~a~~~Gad~v~v~pP~y-------~~~~~~~i~~~~~~i~~~---~~~pi~lYn-----~P~~  135 (285)
T TIGR00674        81 --EA--------ISLTKFAEDVGADGFLVVTPYY-------NKPTQEGLYQHFKAIAEE---VDLPIILYN-----VPSR  135 (285)
T ss_pred             --HH--------HHHHHHHHHcCCCEEEEcCCcC-------CCCCHHHHHHHHHHHHhc---CCCCEEEEE-----CcHH
Confidence              11        2345677889999998876531       233556666655555443   467765332     343 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                       ....+++.+.+++    +. ...+.++|+.|-  ...+.+++    +..+. .+.+-.=+|     ...+.++..|++.
T Consensus       136 tg~~l~~~~l~~L~----~~-~~v~giK~s~~d--~~~~~~l~----~~~~~-~~~v~~G~d-----~~~~~~~~~G~~G  198 (285)
T TIGR00674       136 TGVSLYPETVKRLA----EE-PNIVAIKEATGN--LERISEIK----AIAPD-DFVVLSGDD-----ALTLPMMALGGKG  198 (285)
T ss_pred             hcCCCCHHHHHHHH----cC-CCEEEEEeCCCC--HHHHHHHH----HhcCC-CeEEEECch-----HHHHHHHHcCCCE
Confidence             2245666666554    33 368999999874  44444443    44453 344443333     2345778999763


Q ss_pred             E
Q 012949          376 V  376 (452)
Q Consensus       376 V  376 (452)
                      .
T Consensus       199 ~  199 (285)
T TIGR00674       199 V  199 (285)
T ss_pred             E
Confidence            3

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=85.62  E-value=5.1  Score=42.05  Aligned_cols=85  Identities=18%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHH--HCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE-
Q 012949          300 IPPSKVAYVAKELH--DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV-  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~--~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V-  376 (452)
                      .+.+++..-+..+.  ..|.+.|.=+=--++-+|+++.++|..||+..|..+|++-.=-..+....... +..+|+|.| 
T Consensus       154 Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~It  232 (368)
T PF01645_consen  154 LPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFIT  232 (368)
T ss_dssp             E-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEE
T ss_pred             echhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEE
Confidence            34455555444444  44678888888888999999999999999999888999877665555544333 889999965 


Q ss_pred             -eecccCCCC
Q 012949          377 -DCSVAGLGG  385 (452)
Q Consensus       377 -D~Sv~GlGe  385 (452)
                       |+.=+|-|.
T Consensus       233 IDG~~GGTGA  242 (368)
T PF01645_consen  233 IDGAEGGTGA  242 (368)
T ss_dssp             EE-TT---SS
T ss_pred             EeCCCCCCCC
Confidence             444444433

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated

Probab=85.57  E-value=26  Score=35.98  Aligned_cols=24  Identities=8%  Similarity=0.178  Sum_probs=19.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEe
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEAT  168 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG  168 (452)
                      +-++..+++++.+.++|++.|-+.
T Consensus       183 ~~t~~~~~~~~~~~eaGad~i~i~  206 (346)
T PRK00115        183 KLADATIAYLNAQIEAGAQAVQIF  206 (346)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEe
Confidence            455667788888889999999765

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=85.50  E-value=28  Score=37.51  Aligned_cols=149  Identities=14%  Similarity=0.085  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecC---CC----CCc-ccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSF---VS----PKW-VPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILF  214 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s----~~~-~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~  214 (452)
                      ..+.+..++-++.|.+.|++.|-+...   ..    ... .+...+..++++.+... .+.++...+.+..         
T Consensus       196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~---------  266 (467)
T PRK14329        196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPK---------  266 (467)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcc---------
Confidence            468889899999999999988865321   00    000 00011344555555432 2223222211110         


Q ss_pred             hhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEE
Q 012949          215 QQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVS  289 (452)
Q Consensus       215 ~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~  289 (452)
                           .       ...+-++...++  |...|++.+ +.||..++. .|+.  ...+.+.++++.+|+.  ++.+.++++
T Consensus       267 -----~-------l~~ell~~m~~~~~g~~~i~iglQSgsd~vLk~-m~R~--~t~~~~~~~i~~ir~~~~~~~i~~d~I  331 (467)
T PRK14329        267 -----D-------MTDDVLEVMAKYDNICKHIHLPVQSGSDRILKL-MNRK--YTREWYLDRIDAIRRIIPDCGISTDMI  331 (467)
T ss_pred             -----c-------CCHHHHHHHHhCCCCCCeEEeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCEEEEeEE
Confidence                 0       112355666665  788999876 556544433 3332  1123444566777775  455665555


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                        +|.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       332 --vGfPgET---~edf~~tl~~i~~l~~~~~~  358 (467)
T PRK14329        332 --AGFPTET---EEDHQDTLSLMEEVGYDFAF  358 (467)
T ss_pred             --EeCCCCC---HHHHHHHHHHHHhhCCCeEe
Confidence              7778764   57777777777777776554

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=85.48  E-value=38  Score=33.00  Aligned_cols=110  Identities=25%  Similarity=0.252  Sum_probs=67.4

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc--cE--EEEeCCCcCc
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE--KL--AVHLHDTYGQ  360 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~--~l--~vH~Hnd~Gl  360 (452)
                      |+.+.|+|.. ..+.+.-..-++.+.+.|++.|-+.=-+|..   ....+.+-++.+++..+..  ++  +.--=++..+
T Consensus        60 v~tVigFP~G-~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i  138 (221)
T PRK00507         60 VCTVIGFPLG-ANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEK  138 (221)
T ss_pred             EEEEecccCC-CChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHH
Confidence            4455677875 4444554556677888999988776444433   2455666677777654322  22  2222223333


Q ss_pred             HHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       361 A~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                       ..-+..++++|+|+|=++-+ ++        +|.+.+|++-.+.+..
T Consensus       139 -~~a~~~~~~agadfIKTsTG-~~--------~~gat~~~v~~m~~~~  176 (221)
T PRK00507        139 -VKACEIAKEAGADFVKTSTG-FS--------TGGATVEDVKLMRETV  176 (221)
T ss_pred             -HHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHh
Confidence             45667799999998877643 43        3458888887776653

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=85.43  E-value=11  Score=37.83  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHHCC-c--CEEEEcCCcCCCcHHH------HHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMG-C--FEISLGDTIGVGTPGT------VVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~G-a--d~I~L~DT~G~~~P~~------v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      +|-+.-.+..+.+.++..| +  .++.|.|++-+ -.+.      +..-++.+|+.+| ..+|++=+|+     +.-+..
T Consensus       124 TRKt~Pg~r~~~k~Av~~GGg~~HR~~L~d~vli-kdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s-----~eea~~  197 (268)
T cd01572         124 TRKTTPGLRLLEKYAVRCGGGDNHRFGLSDAVLI-KDNHIAAAGSITEAVRRARAAAPFTLKIEVEVET-----LEQLKE  197 (268)
T ss_pred             CCCCChhhHHHHHHHHHhCCCccccCCCcceeee-ehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECC-----HHHHHH
Confidence            4544445666666666554 3  47888887633 2322      3455788888887 5578888887     577888


Q ss_pred             HHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC--CCC----CCCChhhHHHHHH
Q 012949          368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL--GVE----TNVDLRKLMLAGD  424 (452)
Q Consensus       368 Al~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~--Gi~----t~iDl~~L~~la~  424 (452)
                      |+++|||+|-.               ||...|++-...+..  .+.    -||+.+.+.++++
T Consensus       198 A~~~gaDyI~l---------------d~~~~e~l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~  245 (268)
T cd01572         198 ALEAGADIIML---------------DNMSPEELREAVALLKGRVLLEASGGITLENIRAYAE  245 (268)
T ss_pred             HHHcCCCEEEE---------------CCcCHHHHHHHHHHcCCCCcEEEECCCCHHHHHHHHH
Confidence            99999998844               234566666655532  122    2788888877655

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors

Probab=85.30  E-value=56  Score=35.58  Aligned_cols=200  Identities=13%  Similarity=0.154  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ++..++.. ++...+.|+|+|-+.|-.++      .|-.++.+.+... ..+.+.+.+-...                  
T Consensus       172 ltekD~~d-i~f~~~~~vD~ia~SFV~~~------~di~~~r~~l~~~~~~~~iiakIEt~~------------------  226 (480)
T cd00288         172 LSEKDKAD-LRFGVEQGVDMIFASFVRKA------SDVLEIREVLGEKGKDIKIIAKIENQE------------------  226 (480)
T ss_pred             CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHH------------------
Confidence            55566555 55667889999999763332      1333334444332 1222222221111                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-CCCCCH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPP  302 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-~~r~d~  302 (452)
                           -.+.++..++. +|.|.|.  -.|.-..    ...++......++++.|+++|.++...-.+ .-+.. ..+.+.
T Consensus       227 -----av~nldeI~~~-~DgImIa--rgDLg~e----~g~~~v~~~qk~ii~~~~~~gkpvi~ATqm-LeSM~~~p~PTR  293 (480)
T cd00288         227 -----GVNNFDEILEA-SDGIMVA--RGDLGVE----IPAEEVFLAQKMLIAKCNLAGKPVITATQM-LESMIYNPRPTR  293 (480)
T ss_pred             -----HHHhHHHHHHh-cCEEEEC--cchhhhh----cChHHHHHHHHHHHHHHHHcCCCEEEEchh-HHHHhhCCCCCc
Confidence                 12355555555 7766553  3453222    225677777788999999999987521111 00001 112345


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCc-cEE-------EEe----CCCcCcHHHHHHHHH
Q 012949          303 SKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVE-KLA-------VHL----HDTYGQSLPNILISL  369 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~-~l~-------vH~----Hnd~GlA~ANaLaAl  369 (452)
                      .++.+++....+ |+|.|.|. -|+=.-.|-+..+++..+.++.-.. ...       .+.    .++.-+|.+....|-
T Consensus       294 AEvtDVanav~d-G~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~sAv~~A~  372 (480)
T cd00288         294 AEVSDVANAVLD-GTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFNEMRRLTPRPTSTTEAVAMSAVRAAF  372 (480)
T ss_pred             hhhHHHHHHHHh-CCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHH
Confidence            677777777665 89999994 4555568888877777776643210 000       010    122233334444566


Q ss_pred             HcCCC-EEeecccCC
Q 012949          370 QMGIS-TVDCSVAGL  383 (452)
Q Consensus       370 ~aGa~-~VD~Sv~Gl  383 (452)
                      +.+++ +|-.|-.|-
T Consensus       373 ~l~akaIVv~T~SG~  387 (480)
T cd00288         373 ELGAKAIVVLTTSGR  387 (480)
T ss_pred             hcCCCEEEEECCCcH
Confidence            77887 666666654

Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.

>PRK06354 pyruvate kinase; Provisional

Probab=85.29  E-value=67  Score=35.92  Aligned_cols=256  Identities=14%  Similarity=0.125  Sum_probs=135.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++..++..| +...+.|+|+|-+.|-.++      .|-.++.+.+....+  +.+.+-+-...                
T Consensus       175 ~ltekD~~di-~f~~~~~vD~ia~SFVr~~------~dv~~~r~~l~~~~~~~~~iiaKIEt~e----------------  231 (590)
T PRK06354        175 AITEKDREDL-IFGLEQGVDWIALSFVRNP------SDVLEIRELIEEHNGKHIPIIAKIEKQE----------------  231 (590)
T ss_pred             CCCHHHHHHH-HHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHhcCCCceEEEEECCHH----------------
Confidence            3666776665 6777999999998763222      133333344422112  22322222211                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee---ecCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV---VGCPVEG  298 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~---~g~p~~~  298 (452)
                             -.+.++..++. +|.|.|.  -.|.-.+    ...++.....+++++.|+++|.+|.+.-.+-   ...|   
T Consensus       232 -------av~nldeI~~~-~DgImVa--RGDLgve----~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p---  294 (590)
T PRK06354        232 -------AIDNIDAILEL-CDGLMVA--RGDLGVE----IPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNP---  294 (590)
T ss_pred             -------HHHhHHHHHHh-cCEEEEc--cchhhcc----cCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---
Confidence                   12245555555 7766554  3343222    2256666777889999999999975211110   1122   


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-ccEEEE--e----CCCcC--cHHHHHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EKLAVH--L----HDTYG--QSLPNILIS  368 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH--~----Hnd~G--lA~ANaLaA  368 (452)
                      +.+..++.+++.+..+ |+|.|.|. -|+=...|.+..+++..+.++.-. .....+  .    +++..  +|.+...+|
T Consensus       295 ~PTRAEvsDVaNav~D-G~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a  373 (590)
T PRK06354        295 RPTRAEASDVANAILD-GTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIA  373 (590)
T ss_pred             CCCchhhHHHHHHhhh-CCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHH
Confidence            3345677778887765 89999997 465666898888887777764321 000001  0    12222  333444456


Q ss_pred             HHcCCC-EEeecccCCCC-----C-CCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCC
Q 012949          369 LQMGIS-TVDCSVAGLGG-----C-PYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       369 l~aGa~-~VD~Sv~GlGe-----c-P~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      -..+++ +|-.|-.|--.     + |-.|- -..++-+.+...|.-+ |+.+     ..|.+.+.+.+....+..|.--+
T Consensus       374 ~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI-~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~  452 (590)
T PRK06354        374 LQLDAAAIVTLTKSGATARNVSKYRPKTPI-LAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQ  452 (590)
T ss_pred             hhcCCCEEEEECCChHHHHHHHhhCCCCCE-EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence            788887 55666665322     0 11110 1223456666656543 6533     23555555555555555666555


Q ss_pred             CCcccc
Q 012949          436 SKTAIA  441 (452)
Q Consensus       436 ~~~pi~  441 (452)
                      ..+-++
T Consensus       453 gd~vv~  458 (590)
T PRK06354        453 GDLVVI  458 (590)
T ss_pred             CCEEEE
Confidence            554443

>PLN02389 biotin synthase

Probab=85.22  E-value=6.9  Score=41.19  Aligned_cols=130  Identities=21%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHH
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAV  341 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l  341 (452)
                      +.++.++    .++.+++.|+.-. .+...+........+.+++.++++.+.+.+..   ++=+.|.++++.+..|-++=
T Consensus       117 s~EeIl~----~a~~~~~~G~~~~-~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~---i~~s~G~l~~E~l~~LkeAG  188 (379)
T PLN02389        117 SKDDVLE----AAKRAKEAGSTRF-CMGAAWRDTVGRKTNFNQILEYVKEIRGMGME---VCCTLGMLEKEQAAQLKEAG  188 (379)
T ss_pred             CHHHHHH----HHHHHHHcCCCEE-EEEecccCCCCChhHHHHHHHHHHHHhcCCcE---EEECCCCCCHHHHHHHHHcC
Confidence            4455554    4566777787632 22211101111112457888888888766643   34588988888877775441


Q ss_pred             HHhCCCccEE--------EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          342 MAVVPVEKLA--------VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       342 ~~~~p~~~l~--------vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                      .+.++. .|+        +|...++---+.....|.++|...--+-|.|+||        ..-...+.+..|+.+
T Consensus       189 ld~~~~-~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgE--------t~edrv~~l~~Lr~L  254 (379)
T PLN02389        189 LTAYNH-NLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGE--------AEEDRVGLLHTLATL  254 (379)
T ss_pred             CCEEEe-eecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCC--------CHHHHHHHHHHHHhc
Confidence            222221 122        2333355556778888889999888889999998        123344455555544

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=85.20  E-value=18  Score=36.36  Aligned_cols=99  Identities=14%  Similarity=0.098  Sum_probs=58.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ....+-++|+|.|.+-.+..-.-.-.  .+..|.++.+...+.+.+.++.   .+.  +   ...|+.+..+++...+.+
T Consensus        27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~v--v---~DmPf~sy~~~e~a~~na   98 (263)
T TIGR00222        27 FAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLI--V---TDLPFMSYATPEQALKNA   98 (263)
T ss_pred             HHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceE--E---eCCCcCCCCCHHHHHHHH
Confidence            34556678999888654433221111  1245677777666555444321   111  1   224555544677777766


Q ss_pred             HHHHH-CCcCEEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949          310 KELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       310 ~~l~~-~Gad~I~L~DT~G~~~P~~v~~li~~l~~~  344 (452)
                      .++.+ +||+.|.|-|.      .++.++|+.+.+.
T Consensus        99 ~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~  128 (263)
T TIGR00222        99 ARVMQETGANAVKLEGG------EWLVETVQMLTER  128 (263)
T ss_pred             HHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence            66655 99999999995      4466777777664

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=85.19  E-value=13  Score=40.27  Aligned_cols=162  Identities=15%  Similarity=0.221  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--CceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--ARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ++..+.++.|.+.|++.|-+-.-. .       ..+.+.+.++++..  ..+++++-|.                     
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~D~a~-g-------~~~~~~~~i~~i~~~~~~~~vi~g~~---------------------  274 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVIDTAH-G-------HQVKMISAIKAVRALDLGVPIVAGNV---------------------  274 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEEeCCC-C-------CcHHHHHHHHHHHHHCCCCeEEEecc---------------------
Confidence            566789999999999998874321 1       12345555554432  1344444322                     


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSK-SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~-~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                        ++.+..+.++++|+|.|.+-...--.+.. ...++.+.. +..+.++++.+++.|++|.+         +.+-..+.+
T Consensus       275 --~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~-~~a~~~~~~~~~~~~~~via---------dGgi~~~~d  342 (475)
T TIGR01303       275 --VSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQ-FSAVLECAAEARKLGGHVWA---------DGGVRHPRD  342 (475)
T ss_pred             --CCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCch-HHHHHHHHHHHHHcCCcEEE---------eCCCCCHHH
Confidence              23468889999999999976532221111 223333332 34455777888888887641         334334444


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE----EEeCCCcCcHHHHHHH
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA----VHLHDTYGQSLPNILI  367 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~----vH~Hnd~GlA~ANaLa  367 (452)
                      +   ++.+ .+||+.+.+.-.            ++.- .+.|+..+.    -.+-.-+|||..-++.
T Consensus       343 i---~kal-a~GA~~vm~g~~------------~ag~-~espg~~~~~~~g~~~k~yrGmgs~~a~~  392 (475)
T TIGR01303       343 V---ALAL-AAGASNVMVGSW------------FAGT-YESPGDLMRDRDGRPYKESFGMASKRAVV  392 (475)
T ss_pred             H---HHHH-HcCCCEEeechh------------hccc-ccCCCceEEeECCEEEEEEecccCHHHHh
Confidence            3   3433 489999887543            3332 335653232    2445578999765554

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein

Probab=85.18  E-value=31  Score=31.82  Aligned_cols=79  Identities=14%  Similarity=0.074  Sum_probs=48.1

Q ss_pred             hHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++..+++| ++.|.+....++-......+..... -+++.+.++.+++.|+++.+.+...     .+-.+.+.+.++++
T Consensus       104 ~l~~l~~~g~~~~v~isl~~~~~~~~~~~g~~~~~-~~~~~~~i~~l~~~gi~~~i~~~v~-----~~~~~~~ei~~~~~  177 (191)
T TIGR02495       104 VLEELLEEGLVDYVAMDVKAPPEKYPELYGLEKNG-SNNILKSLEILLRSGIPFELRTTVH-----RGFLDEEDLAEIAT  177 (191)
T ss_pred             HHHHHHhcCCCcEEEEeccCChHHHHHHHCCCCch-HHHHHHHHHHHHHcCCCEEEEEEEe-----CCCCCHHHHHHHHH
Confidence            566677777 6888876654332222223332111 1466677889999999876444321     12344568888999


Q ss_pred             HHHHCC
Q 012949          311 ELHDMG  316 (452)
Q Consensus       311 ~l~~~G  316 (452)
                      .+.+.|
T Consensus       178 ~l~~~~  183 (191)
T TIGR02495       178 RIKENG  183 (191)
T ss_pred             HhccCC
Confidence            888877

This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=85.14  E-value=26  Score=33.02  Aligned_cols=157  Identities=15%  Similarity=0.123  Sum_probs=80.8

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .++++.+.+.|++.|.+-. ..|+.+.          ..+.+.++.+.++..-..|.+     |-     --+++.+.++
T Consensus         9 ~ed~~~a~~~Gvd~ig~i~~~~s~R~v----------~~~~a~~l~~~~~~~~~~V~v-----~v-----n~~~~~i~~i   68 (203)
T cd00405           9 LEDALAAAEAGADAIGFIFAPKSPRYV----------SPEQAREIVAALPPFVKRVGV-----FV-----NEDLEEILEI   68 (203)
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCCCCC----------CHHHHHHHHHhCCCCCcEEEE-----Ee-----CCCHHHHHHH
Confidence            4589999999999999865 3333211          145555555555542122221     10     0123444444


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eecccCCCC
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVAGLGG  385 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~GlGe  385 (452)
                         +.+.|+|.|.|-..-   .|.    .++.+++.++. +...+|.+...-+   ....+...|+|++  |+...+.++
T Consensus        69 ---a~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~~~i~~i~~~~~~~~---~~~~~~~~~aD~il~dt~~~~~~G  135 (203)
T cd00405          69 ---AEELGLDVVQLHGDE---SPE----YCAQLRARLGLPVIKAIRVKDEEDL---EKAAAYAGEVDAILLDSKSGGGGG  135 (203)
T ss_pred             ---HHhcCCCEEEECCCC---CHH----HHHHHHhhcCCcEEEEEecCChhhH---HHhhhccccCCEEEEcCCCCCCCC
Confidence               556799999997542   333    34555655432 2222444433222   2245667899865  665444332


Q ss_pred             CCCCCCCCCcccHHHHHHHHH-cC--CCCCCCChhhHHHHHHH
Q 012949          386 CPYAKGASGNVATEDVVYMLS-GL--GVETNVDLRKLMLAGDF  425 (452)
Q Consensus       386 cP~a~graGNaalE~vv~~L~-~~--Gi~t~iDl~~L~~la~~  425 (452)
                            ++|.+---+++..+. ..  -+--|++.+.+.++.+.
T Consensus       136 ------g~g~~~~~~~l~~~~~~~PvilaGGI~~~Nv~~~i~~  172 (203)
T cd00405         136 ------GTGKTFDWSLLRGLASRKPVILAGGLTPDNVAEAIRL  172 (203)
T ss_pred             ------CCcceEChHHhhccccCCCEEEECCCChHHHHHHHHh
Confidence                  455433333333332 11  01126777777776654

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=85.10  E-value=4  Score=40.22  Aligned_cols=95  Identities=20%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|++.|++.|-+++..   +... ++...++.++++..+.++|+++|+.|.+          ..-.+.+.+..+++
T Consensus       138 ~qi~~A~~~GAd~VELhTG~---yA~a-~~~~~~~el~~~~~aa~~a~~lGL~VnA----------GHgLny~Nv~~i~~  203 (239)
T PRK05265        138 EQIEAAAEVGADRIELHTGP---YADA-KTEAEAAELERIAKAAKLAASLGLGVNA----------GHGLNYHNVKPIAA  203 (239)
T ss_pred             HHHHHHHHhCcCEEEEechh---hhcC-CCcchHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHhHHHHhh
Confidence            38999999999999998742   1111 1223355699999999999999999861          22345555555422


Q ss_pred             HHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHH
Q 012949          311 ELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVM  342 (452)
Q Consensus       311 ~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~  342 (452)
                       +  -+...++|     ++.+=++.+..|+++.+.+.
T Consensus       204 -i--p~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~  237 (239)
T PRK05265        204 -I--PGIEELNIGHAIIARALFVGLEEAVREMKRLMD  237 (239)
T ss_pred             -C--CCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence             1  13556655     45555556666666655544

>PRK09058 coproporphyrinogen III oxidase; Provisional

Probab=85.08  E-value=45  Score=35.73  Aligned_cols=85  Identities=18%  Similarity=0.112  Sum_probs=58.2

Q ss_pred             HHhHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-IPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G-~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .+.++...++|+.+|.+-+. .+|.- ...+|+.  ...+.+.++++.+++.| ..|.+.++  +|.|..   +.+.+.+
T Consensus       163 ~e~l~~l~~aGvnRiSiGVQSf~d~v-Lk~lgR~--~~~~~~~~~i~~l~~~g~~~v~~DlI--~GlPgq---T~e~~~~  234 (449)
T PRK09058        163 DEKADAALDAGANRFSIGVQSFNTQV-RRRAGRK--DDREEVLARLEELVARDRAAVVCDLI--FGLPGQ---TPEIWQQ  234 (449)
T ss_pred             HHHHHHHHHcCCCEEEecCCcCCHHH-HHHhCCC--CCHHHHHHHHHHHHhCCCCcEEEEEE--eeCCCC---CHHHHHH
Confidence            45788889999999998774 44432 3334442  12334446678888898 55776666  666755   4677888


Q ss_pred             HHHHHHHCCcCEEEE
Q 012949          308 VAKELHDMGCFEISL  322 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L  322 (452)
                      -++.+.+.+++.|.+
T Consensus       235 ~l~~~~~l~~~~is~  249 (449)
T PRK09058        235 DLAIVRDLGLDGVDL  249 (449)
T ss_pred             HHHHHHhcCCCEEEE
Confidence            888889999987764

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=84.99  E-value=16  Score=37.29  Aligned_cols=107  Identities=12%  Similarity=0.122  Sum_probs=69.6

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC-----------CC
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG-----------VG  329 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----------~~  329 (452)
                      .+.++.+..+.++++.   ..++|.+-+-.-|       -++..+.+.++++.++|+..|.|-|.++           +.
T Consensus        60 l~~~e~~~~~~~I~~~---~~lPv~aD~dtGy-------G~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv  129 (294)
T TIGR02319        60 TSVSEQAINAKNIVLA---VDVPVIMDADAGY-------GNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLI  129 (294)
T ss_pred             CCHHHHHHHHHHHHhc---cCCCEEEECCCCC-------CCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCcccc
Confidence            4566777766555443   4677765444322       2334478899999999999999999874           34


Q ss_pred             cHHHHHHHHHHHHHhCCCccEEEE------eCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          330 TPGTVVPMLEAVMAVVPVEKLAVH------LHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       330 ~P~~v~~li~~l~~~~p~~~l~vH------~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+++..+.|++.++.-.+.++-+=      ....+--|+.-+.+-.++|||.|=
T Consensus       130 ~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~if  183 (294)
T TIGR02319       130 STEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIF  183 (294)
T ss_pred             CHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEE
Confidence            667777777777764332222221      122345678888888899999653

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=84.95  E-value=27  Score=36.50  Aligned_cols=139  Identities=14%  Similarity=0.068  Sum_probs=81.7

Q ss_pred             hHHHHHHcCCCEEEEEecC--------ChH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEEeeecCCCCC
Q 012949          232 GFEAAIAAGAKEVAIFASA--------SEA--FSKSNINCSIEDSLVRYRAVAHAAKVL-SIP--VRGYVSCVVGCPVEG  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~--------Sd~--~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~--V~~~l~~~~g~p~~~  298 (452)
                      ..++|.++|.|.|.|-..-        |+.  +....+|-|.|+=.+.+.++++.+|+. |.+  |.+-|+..-..+..+
T Consensus       155 AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g  234 (370)
T cd02929         155 AALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGG  234 (370)
T ss_pred             HHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCC
Confidence            5677888999999886432        333  222346788998888899999988884 543  333343210011112


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC----------cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVG----------TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~----------~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      -.+++...++++.+.+. +|.|.+.  .|..          .+....++++.+|+.++. +|..-.-  . .....+..+
T Consensus       235 ~~~~~e~~~~~~~l~~~-~D~i~vs--~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~--i-~~~~~~~~~  307 (370)
T cd02929         235 IESEGEGVEFVEMLDEL-PDLWDVN--VGDWANDGEDSRFYPEGHQEPYIKFVKQVTSK-PVVGVGR--F-TSPDKMVEV  307 (370)
T ss_pred             CCCHHHHHHHHHHHHhh-CCEEEec--CCCccccccccccCCccccHHHHHHHHHHCCC-CEEEeCC--C-CCHHHHHHH
Confidence            23677778888888765 6766552  2311          111124567778887653 4433221  1 123667788


Q ss_pred             HHcC-CCEEe
Q 012949          369 LQMG-ISTVD  377 (452)
Q Consensus       369 l~aG-a~~VD  377 (452)
                      ++.| +|.|-
T Consensus       308 l~~g~~D~V~  317 (370)
T cd02929         308 VKSGILDLIG  317 (370)
T ss_pred             HHcCCCCeee
Confidence            8877 67653

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=84.92  E-value=5.8  Score=40.24  Aligned_cols=82  Identities=15%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEE-EeCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAV-HLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~v-H~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ +++-. ...|+..-|++.+..|-+.|
T Consensus        20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G   99 (299)
T COG0329          20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG   99 (299)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence            668999999999999999999999999999   67889999999999988754 44555 67888999999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      ||.+=+.
T Consensus       100 ad~il~v  106 (299)
T COG0329         100 ADGILVV  106 (299)
T ss_pred             CCEEEEe
Confidence            9977543

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase

Probab=84.86  E-value=60  Score=34.78  Aligned_cols=165  Identities=10%  Similarity=0.048  Sum_probs=98.8

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccC-C--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLA-D--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~-D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++..++++.+.+ .+|..|-++-.     -|-+. |  .+.+++.+++++.++..-+.....       ++.+.  
T Consensus       137 ~ls~eei~~~i~yI~~~p~I~~VlLSGG-----DPLll~d~~L~~iL~~L~~IphV~~IRI~TR~p-------vv~P~--  202 (417)
T TIGR03820       137 IPSKEQILEGIEYIRNTPQIRDVLLSGG-----DPLLLSDDYLDWILTELRAIPHVEVIRIGTRVP-------VVLPQ--  202 (417)
T ss_pred             cCCHHHHHHHHHHHHhcCCCCEEEEeCC-----ccccCChHHHHHHHHHHhhcCCCceEEEeeccc-------ccccc--
Confidence            4688888999998887 58887766532     12222 2  244456666666554221111100       00000  


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE--EEEEeeecCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR--GYVSCVVGCPVE  297 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~--~~l~~~~g~p~~  297 (452)
                             +.+.+-++...+.+.  +.|.++.+-.          .|..+...++++..++.|+.+.  ..|.  -|-   
T Consensus       203 -------RIT~ell~~Lk~~~~--~~v~~h~nhp----------~Eit~~a~~Al~~L~~aGI~l~nQsVLL--kGV---  258 (417)
T TIGR03820       203 -------RITDELVAILKKHHP--VWLNTHFNHP----------REITASSKKALAKLADAGIPLGNQSVLL--AGV---  258 (417)
T ss_pred             -------ccCHHHHHHHHhcCC--eEEEEeCCCh----------HhChHHHHHHHHHHHHcCCEEEeeceEE--CCc---
Confidence                   012334455556664  4443433321          2445777788899999999874  2222  111   


Q ss_pred             CCCCHHHHHHHHHHHHHCCc--CEEEEcCCcCCCc----H-HHHHHHHHHHHHhCCC
Q 012949          298 GAIPPSKVAYVAKELHDMGC--FEISLGDTIGVGT----P-GTVVPMLEAVMAVVPV  347 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Ga--d~I~L~DT~G~~~----P-~~v~~li~~l~~~~p~  347 (452)
                       --+++.+.++.+.+.++|+  .-+..+|-+....    | .+..++++.++.++++
T Consensus       259 -ND~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG  314 (417)
T TIGR03820       259 -NDCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG  314 (417)
T ss_pred             -CCCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence             1267889999999999996  5889999776543    2 5578999999998865

This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=84.80  E-value=11  Score=36.63  Aligned_cols=12  Identities=17%  Similarity=0.205  Sum_probs=6.1

Q ss_pred             HHHHHHHhCCCc
Q 012949          272 AVAHAAKVLSIP  283 (452)
Q Consensus       272 ~~v~~Ak~~G~~  283 (452)
                      ++++...+.|++
T Consensus        23 ~i~~~L~~~GV~   34 (265)
T cd03174          23 EIAEALDEAGVD   34 (265)
T ss_pred             HHHHHHHHcCCC
Confidence            344445555655

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=84.76  E-value=39  Score=33.19  Aligned_cols=131  Identities=16%  Similarity=0.105  Sum_probs=75.3

Q ss_pred             HcCCCEEEEEecCChHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 012949          238 AAGAKEVAIFASASEAF-SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  316 (452)
Q Consensus       238 ~~Gi~~V~i~~s~Sd~~-~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G  316 (452)
                      +.+++.|.|-++..... .+...|...-.-.+.+.++++.+++.+.+|.+-+..-        .+.....++++.+.++|
T Consensus        90 ~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~--------~~~~~~~~~a~~l~~aG  161 (231)
T TIGR00736        90 AEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGN--------CIPLDELIDALNLVDDG  161 (231)
T ss_pred             hcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCC--------CCcchHHHHHHHHHHcC
Confidence            34788777754432210 1111222222233566677788887788776544321        13346778999999999


Q ss_pred             cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          317 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       317 ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ++.|.+ |..=...|..-.+.|+.+++.++.++|--  -++- ....-++..+++||+.|-.+=
T Consensus       162 ad~i~V-d~~~~g~~~a~~~~I~~i~~~~~~ipIIg--NGgI-~s~eda~e~l~~GAd~VmvgR  221 (231)
T TIGR00736       162 FDGIHV-DAMYPGKPYADMDLLKILSEEFNDKIIIG--NNSI-DDIESAKEMLKAGADFVSVAR  221 (231)
T ss_pred             CCEEEE-eeCCCCCchhhHHHHHHHHHhcCCCcEEE--ECCc-CCHHHHHHHHHhCCCeEEEcH
Confidence            999988 42111223345678888888875333322  1111 223566777788999886543

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=84.73  E-value=18  Score=35.27  Aligned_cols=108  Identities=13%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-------CC--
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-------IP--  301 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-------~d--  301 (452)
                      +.++++.++|.+.|-+..+..                ....++-+.+++.|+++... ..-++....+.       ..  
T Consensus        19 ~~l~~~a~~Gf~~VEl~~~~~----------------~~~~~~~~~l~~~gl~~~~~-~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T PRK09997         19 ARFEKAAQCGFRGVEFMFPYD----------------YDIEELKQVLASNKLEHTLH-NLPAGDWAAGERGIACIPGREE   81 (258)
T ss_pred             HHHHHHHHhCCCEEEEcCCCC----------------CCHHHHHHHHHHcCCcEEEE-cCCCCccccCcCccccCCCcHH
Confidence            478899999999999865211                12334556677899998532 11111100000       01  


Q ss_pred             --HHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHH-HHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949          302 --PSKVAYVAKELHDMGCFEISLGDTIGV----GTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDT  357 (452)
Q Consensus       302 --~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd  357 (452)
                        .+.+.+.++.+.++|+..|.+.  .|.    ..+.+ ...+++.+++.   .  -++.|.+|.||.
T Consensus        82 ~~~~~~~~~i~~a~~lga~~i~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~  147 (258)
T PRK09997         82 EFRDGVAAAIRYARALGNKKINCL--VGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINH  147 (258)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence              2446778888889999988764  222    23333 23333333321   1  246899998764

>PRK05985 cytosine deaminase; Provisional

Probab=84.71  E-value=32  Score=35.73  Aligned_cols=148  Identities=14%  Similarity=0.084  Sum_probs=89.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+++.|.+.+..+.+.+.       ....+   +.+.++++.|+++|+.+...+...      .......+.++++
T Consensus       164 ~ll~~~l~~g~~~~gg~~p~~~-------~~~~~---~~l~~~~~~A~~~g~~i~~Hv~e~------~d~~~~~~~~~~e  227 (391)
T PRK05985        164 ELLDAALRAGADVVGGLDPAGI-------DGDPE---GQLDIVFGLAERHGVGIDIHLHEP------GELGAFQLERIAA  227 (391)
T ss_pred             HHHHHHHHcCCCEEeCCCCCCc-------CCCHH---HHHHHHHHHHHHhCCCcEEeeCCC------CCccHHHHHHHHH
Confidence            3577788888774443322111       11122   455678899999999887554321      1112245556666


Q ss_pred             HHHHCCcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 012949          311 ELHDMGCF---EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  387 (452)
Q Consensus       311 ~l~~~Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  387 (452)
                      .+.+.|..   .+.-+...+.+.+.++.++++.+++. + +.+ .|+. ..+.+++..-..+++|++..=+|=+..  .|
T Consensus       228 ~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~-g-~~v-~~~~-~~~~~~~~~~~l~~~Gv~v~lGtD~~~--~~  301 (391)
T PRK05985        228 RTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEA-G-VAI-MTNA-PGSVPVPPVAALRAAGVTVFGGNDGIR--DT  301 (391)
T ss_pred             HHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHc-C-CeE-EEeC-CCCCCCCCHHHHHHCCCeEEEecCCCC--CC
Confidence            66666753   66667777888899888888888774 3 223 3553 346778889999999998654444322  25


Q ss_pred             CCCCCCCcccHHHH
Q 012949          388 YAKGASGNVATEDV  401 (452)
Q Consensus       388 ~a~graGNaalE~v  401 (452)
                      |.|...++ .++.+
T Consensus       302 ~~p~~~~~-~~~~~  314 (391)
T PRK05985        302 WWPYGNGD-MLERA  314 (391)
T ss_pred             CcCCCCCc-HHHHH
Confidence            55543444 35443

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=84.70  E-value=29  Score=34.94  Aligned_cols=209  Identities=17%  Similarity=0.174  Sum_probs=126.8

Q ss_pred             cCCCCccEEEeCC---ccccCCCC---C-CC-CCHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHH
Q 012949          121 KGIPRFVKIVEVG---PRDGLQNE---K-NT-VPTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAV  189 (452)
Q Consensus       121 ~~~p~~V~I~D~T---LRDG~Q~~---~-~~-~~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i  189 (452)
                      ....+.+.|+|+.   .+.|....   | .. =+.++.+.+++.+.++|.+.+--|-|   .||.-+-.+ . ++-+..+
T Consensus        24 ~~~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGl-g-e~gL~~l  101 (286)
T COG2876          24 REVKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGL-G-EEGLKLL  101 (286)
T ss_pred             ccccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCccccccc-C-HHHHHHH
Confidence            3445567788865   44443211   1 12 46789999999999999999999854   355422222 2 2334444


Q ss_pred             Hhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHH
Q 012949          190 RDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLV  268 (452)
Q Consensus       190 ~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~  268 (452)
                      ++. ....+++++.-+                        ..++++.+.+. +|.+.|-..     +           ++
T Consensus       102 ~~a~~~~Gl~vvtEvm------------------------~~~~~e~~~~y-~DilqvGAR-----N-----------MQ  140 (286)
T COG2876         102 KRAADETGLPVVTEVM------------------------DVRDVEAAAEY-ADILQVGAR-----N-----------MQ  140 (286)
T ss_pred             HHHHHHcCCeeEEEec------------------------CHHHHHHHHhh-hhHHHhccc-----c-----------hh
Confidence            432 123344444222                        12488888776 777776542     1           11


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc-----HHHH-HHHHHHHH
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT-----PGTV-VPMLEAVM  342 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~-----P~~v-~~li~~l~  342 (452)
                      +. ++.+.+=+.+.+|-  |..-      --.+.+++...|+-+...|-..|.||-- |+-+     +... -.-|..+|
T Consensus       141 NF-~LLke~G~~~kPvL--LKRg------~~aTieEwL~AAEYI~s~GN~~vILCER-GIRtfe~~TRntLDi~aV~~~k  210 (286)
T COG2876         141 NF-ALLKEVGRQNKPVL--LKRG------LSATIEEWLNAAEYILSHGNGNVILCER-GIRTFEKATRNTLDISAVPILK  210 (286)
T ss_pred             hh-HHHHHhcccCCCeE--EecC------ccccHHHHHHHHHHHHhCCCCcEEEEec-ccccccccccceechHHHHHHH
Confidence            11 23344444556664  2221      1246788888999999999888989863 3333     3221 12245555


Q ss_pred             Hh--CCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          343 AV--VPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       343 ~~--~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      +.  +|.+ +.. |.-+..-+-..-+.+|+.+|||.+-..|..=
T Consensus       211 q~THLPVi-vDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~  253 (286)
T COG2876         211 QETHLPVI-VDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPD  253 (286)
T ss_pred             hhcCCCEE-ECCCCcccchhhHHHHHHHHHhccCCeeEEEecCC
Confidence            54  4642 333 8888899999999999999999998888753

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=84.70  E-value=12  Score=36.95  Aligned_cols=77  Identities=25%  Similarity=0.339  Sum_probs=51.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.+++|++.|++.|-+.+..   +........++..++++.+++++|+++|+.|.+          ..-.+.+.+..+++
T Consensus       135 ~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA----------GHgLny~Nv~~i~~  201 (234)
T cd00003         135 EQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVNA----------GHGLNYENVKPIAK  201 (234)
T ss_pred             HHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec----------CCCCCHHHHHHHHh
Confidence            38899999999999998742   111111223455699999999999999999862          22345566665554


Q ss_pred             HHHHCCcCEEEEc
Q 012949          311 ELHDMGCFEISLG  323 (452)
Q Consensus       311 ~l~~~Gad~I~L~  323 (452)
                       +  -+...++|.
T Consensus       202 -i--p~i~ElnIG  211 (234)
T cd00003         202 -I--PGIAELNIG  211 (234)
T ss_pred             -C--CCCeEEccC
Confidence             2  246666653

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=84.67  E-value=8.6  Score=37.63  Aligned_cols=120  Identities=13%  Similarity=0.133  Sum_probs=63.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee-----ec--CCCC-C-CCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV-----VG--CPVE-G-AIP  301 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~-----~g--~p~~-~-r~d  301 (452)
                      +.++.+.++|.+.|-++......+   ....+    ...+.++-+.+++.|++|.. +...     +.  .++. . +..
T Consensus        17 ~~l~~~~~~G~~~vEl~~~~~~~~---~~~~~----~~~~~~l~~~~~~~gl~v~s-~~~~~~~~~~~~~~~~~~~r~~~   88 (275)
T PRK09856         17 HAFRDASELGYDGIEIWGGRPHAF---APDLK----AGGIKQIKALAQTYQMPIIG-YTPETNGYPYNMMLGDEHMRRES   88 (275)
T ss_pred             HHHHHHHHcCCCEEEEccCCcccc---ccccC----chHHHHHHHHHHHcCCeEEE-ecCcccCcCccccCCCHHHHHHH
Confidence            488999999999999864211100   00111    12345566778899998853 2110     00  0000 0 012


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCC-cCC-CcHHH-HHHHHHHHHHh---C--CCccEEEEeCCCc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDT-IGV-GTPGT-VVPMLEAVMAV---V--PVEKLAVHLHDTY  358 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT-~G~-~~P~~-v~~li~~l~~~---~--p~~~l~vH~Hnd~  358 (452)
                      .+++.+.++.+...|++.|.+.=+ .|. .++.+ ...+++.++..   .  -++.|.+|.|..+
T Consensus        89 ~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~iE~~~~~  153 (275)
T PRK09856         89 LDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPY  153 (275)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCC
Confidence            245666778888999998877311 111 12322 23333333221   1  2568999988643

>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=84.62  E-value=21  Score=38.13  Aligned_cols=149  Identities=15%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-C------CCcccc---cCCHHHHHHHHHhccCCc-eeEEecchhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-S------PKWVPQ---LADARDVMEAVRDLEGAR-LPVLTPNLKVILQRSI  212 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s------~~~~p~---~~D~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~  212 (452)
                      ..+.+..++=++.|.+.|++.|.+.... .      +...|.   ..+..++++.+..+.+.. +......         
T Consensus       176 sr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~---------  246 (448)
T PRK14333        176 SRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSH---------  246 (448)
T ss_pred             ccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCC---------
Confidence            3577888888888888999988764210 0      000011   113455666665544421 1110100         


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEE
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGY  287 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~  287 (452)
                            ...+      ..+-++.+.+.  +...+++.+ +.|+--++. .|+.  ...+.+.++++.+++.  |+.+.++
T Consensus       247 ------p~~~------~~eli~~~~~~~~~~~~l~igiQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~p~i~i~~d  311 (448)
T PRK14333        247 ------PRYF------TERLIKACAELPKVCEHFHIPFQSGDNEILKA-MARG--YTHEKYRRIIDKIREYMPDASISAD  311 (448)
T ss_pred             ------hhhh------hHHHHHHHhcCCcccccccCCCccCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCcEEEee
Confidence                  0000      12234444554  467777755 455543332 3332  2344555777888888  6666666


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS  321 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~  321 (452)
                      ++  +|.|.++   .+.+.+.++.+.+.+.+.+.
T Consensus       312 ~I--vGfPgET---~edf~~tl~~l~~~~~~~~~  340 (448)
T PRK14333        312 AI--VGFPGET---EAQFENTLKLVEEIGFDQLN  340 (448)
T ss_pred             EE--EECCCCC---HHHHHHHHHHHHHcCCCEEe
Confidence            65  6777764   67777777878888876554

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=84.54  E-value=30  Score=34.11  Aligned_cols=190  Identities=15%  Similarity=0.138  Sum_probs=112.7

Q ss_pred             HHHHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      +-+....+.|.++||+=.--+. ..-|+    --++..+.+..++.+.++++.+..    =+.|....-++|.       
T Consensus        12 ~~l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ipv~~MIRPRgG----dFvY~~~E~~iM~-------   76 (241)
T COG3142          12 EGLLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIPVYVMIRPRGG----DFVYSDDELEIML-------   76 (241)
T ss_pred             hhHHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCceEEEEecCCC----CcccChHHHHHHH-------
Confidence            4466778899999998532111 01121    123444444456666667755542    2456665555554       


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +|++.+.++|++.|.+-....|-.+.          .++++++++.|..+++...    .+|   |.. .|   -.+..+
T Consensus        77 ~DI~~~~~lG~~GVV~G~lt~dg~iD----------~~~le~Li~aA~gL~vTFH----rAF---D~~-~d---~~~ale  135 (241)
T COG3142          77 EDIRLARELGVQGVVLGALTADGNID----------MPRLEKLIEAAGGLGVTFH----RAF---DEC-PD---PLEALE  135 (241)
T ss_pred             HHHHHHHHcCCCcEEEeeecCCCccC----------HHHHHHHHHHccCCceeee----hhh---hhc-CC---HHHHHH
Confidence            59999999999988887655553221          3566777777765443322    233   221 22   345667


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH-HHcCCCEEeecccC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTVDCSVAG  382 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA-l~aGa~~VD~Sv~G  382 (452)
                      .+.+.|+.+|-=  +-|..++.+-.++++.+.+...+ ++.+=.  --|.-..|...- ...|++.+|+|-..
T Consensus       136 ~li~~Gv~RILT--sGg~~sa~eg~~~l~~li~~a~g-ri~Im~--GaGV~~~N~~~l~~~tg~~e~H~s~~~  203 (241)
T COG3142         136 QLIELGVERILT--SGGKASALEGLDLLKRLIEQAKG-RIIIMA--GAGVRAENIAELVLLTGVTEVHGSAGV  203 (241)
T ss_pred             HHHHCCCcEEec--CCCcCchhhhHHHHHHHHHHhcC-CEEEEe--CCCCCHHHHHHHHHhcCchhhhhcccc
Confidence            889999988753  44556676666667776665543 222211  124444555444 57999999999876

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Probab=84.53  E-value=62  Score=36.80  Aligned_cols=166  Identities=12%  Similarity=0.130  Sum_probs=85.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hc--cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DL--EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      +.+++.-++=+..|.++|.+.+-++.       |...+++. +..|+ .+  .+..++. +...    +    |.     
T Consensus       106 T~D~eatv~Qi~~l~~aGceiVRvtv-------~~~~~A~a-l~~I~~~L~~~g~~iPL-VADI----H----F~-----  163 (733)
T PLN02925        106 TKDVEATVDQVMRIADKGADIVRITV-------QGKKEADA-CFEIKNTLVQKGYNIPL-VADI----H----FA-----  163 (733)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEcC-------CCHHHHHh-HHHHHHHHhhcCCCCCE-EEec----C----CC-----
Confidence            46677788889999999999999975       33444433 33333 22  1222221 1111    1    11     


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhc------CCCHHHHHHHHH----HHHHHHHhCCCcEEEEEEe
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNI------NCSIEDSLVRYR----AVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~------~~s~e~~l~~~~----~~v~~Ak~~G~~V~~~l~~  290 (452)
                               .+-...|++. ++.|||--. |=...+..|      .-..++-+++++    .+|+.||++|..++.-+- 
T Consensus       164 ---------~~~Al~a~~~-vdkiRINPG-N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN-  231 (733)
T PLN02925        164 ---------PSVALRVAEC-FDKIRVNPG-NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN-  231 (733)
T ss_pred             ---------HHHHHHHHHh-cCCeEECCc-ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC-
Confidence                     0122345556 888888421 100000000      112334454444    599999999999984332 


Q ss_pred             eecCCCC---CC--CCHHHH----HHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHh
Q 012949          291 VVGCPVE---GA--IPPSKV----AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       291 ~~g~p~~---~r--~d~e~l----~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~  344 (452)
                       .|+-..   .+  -+|+-+    .+.++.+.+.|-+  .|+++.|.=...-...+.++..+.+.
T Consensus       232 -~GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~  295 (733)
T PLN02925        232 -HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVL  295 (733)
T ss_pred             -CcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhc
Confidence             222110   01  144433    3466777788876  56666664443444455555555443

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=84.37  E-value=40  Score=32.43  Aligned_cols=167  Identities=17%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCC--CCCCHHHH-
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVE--GAIPPSKV-  305 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~--~r~d~e~l-  305 (452)
                      .+++..|.+.|+++|-+....+.      =|.|+-  +.    .++.++ ...++|.+=|-     |-.  ..++.+++ 
T Consensus        10 ~~~a~~A~~~GAdRiELc~~l~~------GGlTPS--~g----~i~~~~~~~~ipv~vMIR-----pr~gdF~Ys~~E~~   72 (201)
T PF03932_consen   10 LEDALAAEAGGADRIELCSNLEV------GGLTPS--LG----LIRQAREAVDIPVHVMIR-----PRGGDFVYSDEEIE   72 (201)
T ss_dssp             HHHHHHHHHTT-SEEEEEBTGGG------T-B-----HH----HHHHHHHHTTSEEEEE-------SSSS-S---HHHHH
T ss_pred             HHHHHHHHHcCCCEEEECCCccC------CCcCcC--HH----HHHHHHhhcCCceEEEEC-----CCCCCccCCHHHHH
Confidence            35888999999999999864332      133432  22    223333 46777653222     322  24555554 


Q ss_pred             --HHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEEeecc
Q 012949          306 --AYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTVDCSV  380 (452)
Q Consensus       306 --~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~VD~Sv  380 (452)
                        .+-++.+.++|++.|.+.  +.-|...-..+.++++...    ..++.||-==|.=.-...++..+ +.|+++|=||=
T Consensus        73 ~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSG  148 (201)
T PF03932_consen   73 IMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSG  148 (201)
T ss_dssp             HHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEEST
T ss_pred             HHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCC
Confidence              456678889999977763  4555555566666666543    45778876555444455555555 78999998772


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCCCC----CCCChhhHHHHHH
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLGVE----TNVDLRKLMLAGD  424 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~Gi~----t~iDl~~L~~la~  424 (452)
                      .--..      -.|..-|.+++..... .++    -|++.+.+.++.+
T Consensus       149 g~~~a------~~g~~~L~~lv~~a~~-~i~Im~GgGv~~~nv~~l~~  189 (201)
T PF03932_consen  149 GAPTA------LEGIENLKELVEQAKG-RIEIMPGGGVRAENVPELVE  189 (201)
T ss_dssp             TSSST------TTCHHHHHHHHHHHTT-SSEEEEESS--TTTHHHHHH
T ss_pred             CCCCH------HHHHHHHHHHHHHcCC-CcEEEecCCCCHHHHHHHHH
Confidence            22111      1233334444333221 121    2677777776554

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=84.35  E-value=14  Score=35.42  Aligned_cols=163  Identities=14%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .++++.-...|-..|-+.+            .++ ...+++..++.+-++.-  +       .|..+.     -+..-+.
T Consensus         2 ~~mA~Aa~~gGA~giR~~~------------~~d-I~aik~~v~lPIIGi~K--~-------~y~~~~-----V~ITPT~   54 (192)
T PF04131_consen    2 ARMAKAAEEGGAVGIRANG------------VED-IRAIKKAVDLPIIGIIK--R-------DYPDSD-----VYITPTL   54 (192)
T ss_dssp             HHHHHHHHHCT-SEEEEES------------HHH-HHHHHTTB-S-EEEE-B----------SBTTSS-------BS-SH
T ss_pred             HHHHHHHHHCCceEEEcCC------------HHH-HHHHHHhcCCCEEEEEe--c-------cCCCCC-----eEECCCH
Confidence            3566666777777777643            233 45566544444333331  0       011111     0122345


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ++++...++|++.|.+=....          .+.   +.+.+++++.|+.+..+.+.++           +.    +-+.
T Consensus        55 ~ev~~l~~aGadIIAlDaT~R----------~Rp---~~l~~li~~i~~~~~l~MADis-----------t~----ee~~  106 (192)
T PF04131_consen   55 KEVDALAEAGADIIALDATDR----------PRP---ETLEELIREIKEKYQLVMADIS-----------TL----EEAI  106 (192)
T ss_dssp             HHHHHHHHCT-SEEEEE-SSS----------S-S---S-HHHHHHHHHHCTSEEEEE-S-----------SH----HHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCC----------CCC---cCHHHHHHHHHHhCcEEeeecC-----------CH----HHHH
Confidence            799999999999999854322          223   4456778888998844433222           22    3455


Q ss_pred             HHHHCCcCEEEE------cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          311 ELHDMGCFEISL------GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       311 ~l~~~Gad~I~L------~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.++|+|.|.-      .+|.+ -.|  =.+|++.+++.  ..++-.-.|-.   -...+..|+++||..|
T Consensus       107 ~A~~~G~D~I~TTLsGYT~~t~~-~~p--D~~lv~~l~~~--~~pvIaEGri~---tpe~a~~al~~GA~aV  170 (192)
T PF04131_consen  107 NAAELGFDIIGTTLSGYTPYTKG-DGP--DFELVRELVQA--DVPVIAEGRIH---TPEQAAKALELGAHAV  170 (192)
T ss_dssp             HHHHTT-SEEE-TTTTSSTTSTT-SSH--HHHHHHHHHHT--TSEEEEESS-----SHHHHHHHHHTT-SEE
T ss_pred             HHHHcCCCEEEcccccCCCCCCC-CCC--CHHHHHHHHhC--CCcEeecCCCC---CHHHHHHHHhcCCeEE
Confidence            677899999864      45555 223  35677888775  34554433322   2477889999999865

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>TIGR00284 dihydropteroate synthase-related protein

Probab=84.31  E-value=9.1  Score=41.79  Aligned_cols=74  Identities=15%  Similarity=0.138  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+.+.+.++.+.+.|||.|-+.=-.+.-.|..+...|+.+++.++ .+|.+=..+     ..-+.+|+++||++|+ ++.
T Consensus       164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~-----~~v~eaAL~aGAdiIN-sVs  236 (499)
T TIGR00284       164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPT-----LDELYEALKAGASGVI-MPD  236 (499)
T ss_pred             hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCC-----HHHHHHHHHcCCCEEE-ECC
Confidence            378888999999999999999865555566779999999988764 478876554     3566789999999998 555


Q ss_pred             C
Q 012949          382 G  382 (452)
Q Consensus       382 G  382 (452)
                      |
T Consensus       237 ~  237 (499)
T TIGR00284       237 V  237 (499)
T ss_pred             c
Confidence            5

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated

Probab=84.28  E-value=5.9  Score=40.34  Aligned_cols=83  Identities=14%  Similarity=0.143  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHH----HHHHhCCCccEEEEeCCCcCcHHHHHHHH-HHcCCCEE
Q 012949          305 VAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLE----AVMAVVPVEKLAVHLHDTYGQSLPNILIS-LQMGISTV  376 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~----~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA-l~aGa~~V  376 (452)
                      +.++++.+.++||+.|.+.|+.+   .++|....+++.    .+.+.+......+|++-+..    ..+.. .+.|++.+
T Consensus       182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~----~~l~~~~~~g~d~~  257 (339)
T PRK06252        182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLT----SILEEMADCGFDGI  257 (339)
T ss_pred             HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCch----HHHHHHHhcCCCee
Confidence            34566778889999999999875   689988776653    33333332145678875542    22333 35788764


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYML  405 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L  405 (452)
                      .     +..         ..+++++...+
T Consensus       258 ~-----~d~---------~~dl~~~~~~~  272 (339)
T PRK06252        258 S-----IDE---------KVDVKTAKENV  272 (339)
T ss_pred             c-----cCC---------CCCHHHHHHHh
Confidence            3     334         24677776655

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=84.27  E-value=53  Score=33.68  Aligned_cols=161  Identities=17%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CH----HHHHHHHHhccCCceeEEe---cchhhhhhhhhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DA----RDVMEAVRDLEGARLPVLT---PNLKVILQRSILFQ  215 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~----e~v~~~i~~~~~~~l~~l~---~~~~~~i~r~~~~~  215 (452)
                      .+.++-.++++.+.++|++.||+-....+. -|...  +.    .++++.+++..  ++++++   |+..          
T Consensus       109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~-~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p~~~----------  175 (325)
T cd04739         109 VSAGGWVDYARQIEEAGADALELNIYALPT-DPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSPFFS----------  175 (325)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCCCC-CCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCCCcc----------
Confidence            356888999999999999999997642111 01111  11    23344444322  334433   2221          


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCCh--HHHh-----hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEE
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASE--AFSK-----SNINCSIEDSLVRYRAVAHAAKV-LSIPVRGY  287 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--~~~~-----~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~  287 (452)
                          +        ..+.++++.++|++-|.+......  +..+     ...+.|-........+.+..+++ ..+++.+ 
T Consensus       176 ----~--------~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig-  242 (325)
T cd04739         176 ----A--------LAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAA-  242 (325)
T ss_pred             ----C--------HHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEE-
Confidence                0        113556788899999888654311  1000     00111111111222233444433 3555532 


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                          .    .+-.+.+++.+..    .+||+.|.++=..=.--|.-+.++++.|.+
T Consensus       243 ----~----GGI~s~~Da~e~l----~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~  286 (325)
T cd04739         243 ----S----GGVHDAEDVVKYL----LAGADVVMTTSALLRHGPDYIGTLLAGLEA  286 (325)
T ss_pred             ----E----CCCCCHHHHHHHH----HcCCCeeEEehhhhhcCchHHHHHHHHHHH
Confidence                1    3445566655544    279999999843322237777777776655

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=84.20  E-value=9.1  Score=36.47  Aligned_cols=78  Identities=23%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEc----------CCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeC--CCcC-cHHHH
Q 012949          301 PPSKVAYVAKELHDMGCFEISLG----------DTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLH--DTYG-QSLPN  364 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~----------DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~H--nd~G-lA~AN  364 (452)
                      +++.+.+.++.+.++|+|.|.|.          |-.|.   ..|..+.++++.+++..+ .++.+-.-  .+.. -...-
T Consensus        65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~  143 (231)
T cd02801          65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLEL  143 (231)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHH
Confidence            57888888998888899988874          33333   278888999999988876 34544332  2222 12222


Q ss_pred             HHHHHHcCCCEEeec
Q 012949          365 ILISLQMGISTVDCS  379 (452)
Q Consensus       365 aLaAl~aGa~~VD~S  379 (452)
                      +-...++|++.|..+
T Consensus       144 ~~~l~~~Gvd~i~v~  158 (231)
T cd02801         144 AKALEDAGASALTVH  158 (231)
T ss_pred             HHHHHHhCCCEEEEC
Confidence            223335799988654

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=84.13  E-value=23  Score=36.02  Aligned_cols=107  Identities=18%  Similarity=0.145  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc----------C---
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI----------G---  327 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~----------G---  327 (452)
                      .+.++.++.+.++++..   .++|.+-+-.-|       -++..+.+.++++.++|+..|.|-|.+          |   
T Consensus        58 l~~~e~~~~~~~I~~~~---~lPv~aD~d~Gy-------G~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~  127 (290)
T TIGR02321        58 LSMSTHLEMMRAIASTV---SIPLIADIDTGF-------GNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQE  127 (290)
T ss_pred             CCHHHHHHHHHHHHhcc---CCCEEEECCCCC-------CCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCcc
Confidence            46777777776555443   677765444322       233368889999999999999999974          2   


Q ss_pred             CCcHHHHHHHHHHHHHhCCCccEEEEeCC-------CcCcHHHHHHHHHHcCCCEEe
Q 012949          328 VGTPGTVVPMLEAVMAVVPVEKLAVHLHD-------TYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       328 ~~~P~~v~~li~~l~~~~p~~~l~vH~Hn-------d~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +..++...+.|++.++.-.+..+-+=.--       ..--|+.-+.+-.+||||.|=
T Consensus       128 l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~aY~eAGAD~if  184 (290)
T TIGR02321       128 LVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEEAGADAIL  184 (290)
T ss_pred             ccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHHHHHcCCCEEE
Confidence            34667777778877764322223222221       224577788888899999653

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=84.10  E-value=42  Score=32.45  Aligned_cols=92  Identities=16%  Similarity=0.077  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEee
Q 012949          302 PSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVDC  378 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD~  378 (452)
                      .....++++.+.+.|++.|.+  -+..|..... -.++++.+++..+ +|+-.-.--.   .......+++. ||+.|=+
T Consensus       148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~---~~~di~~~l~~~g~dgv~v  222 (243)
T cd04731         148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAG---KPEHFVEAFEEGGADAALA  222 (243)
T ss_pred             CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCC---CHHHHHHHHHhCCCCEEEE
Confidence            345667888899999998888  4444433222 3466777776653 3555543211   12445555665 7764432


Q ss_pred             cccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          379 SVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       379 Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                         |-.=      -.|..+++++...|++
T Consensus       223 ---g~al------~~~~~~~~~~~~~~~~  242 (243)
T cd04731         223 ---ASIF------HFGEYTIAELKEYLAE  242 (243)
T ss_pred             ---eHHH------HcCCCCHHHHHHHHhh
Confidence               2111      2455678887776653

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=84.01  E-value=39  Score=33.27  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=68.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe-ee-cCCCCCC------CCH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-VV-GCPVEGA------IPP  302 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~-~~-g~p~~~r------~d~  302 (452)
                      +.++.+.++|.+.|-+...-.+... ..+..+    -..+.++.+.+++.|++|.. ++. .+ ..+....      ...
T Consensus        20 e~l~~~~~~G~~~VEl~~~~~~~~~-~~~~~~----~~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~~~~~~r~~~~   93 (279)
T TIGR00542        20 ERLQLAKTCGFDFVEMSVDETDDRL-SRLDWS----REQRLALVNAIIETGVRIPS-MCLSAHRRFPLGSKDKAVRQQGL   93 (279)
T ss_pred             HHHHHHHHcCCCEEEEecCCccchh-hccCCC----HHHHHHHHHHHHHcCCCcee-eecCCCccCcCCCcCHHHHHHHH
Confidence            4788899999999999754321100 011222    23344566788899999752 221 00 0011111      112


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCC---cCCCcHHHHHHHHHHHHHhC-----CCccEEEEeCCCc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDT---IGVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDTY  358 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT---~G~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd~  358 (452)
                      +.+.+.++.+.++|+..|.+.-.   .+-..+.....+++.+++..     -++.|.+|.|+..
T Consensus        94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~  157 (279)
T TIGR00542        94 EIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTP  157 (279)
T ss_pred             HHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCc
Confidence            35677888889999999988632   12223444555555554432     1467999988653

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=83.98  E-value=24  Score=38.41  Aligned_cols=163  Identities=18%  Similarity=0.244  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++..+.++.|.+.|++.|-+-.-..+.     ....+.++.+|+ .++  +.+++-|.                      
T Consensus       226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~-----~~~~~~i~~ik~~~p~--~~v~agnv----------------------  276 (479)
T PRK07807        226 GDVAAKARALLEAGVDVLVVDTAHGHQ-----EKMLEALRAVRALDPG--VPIVAGNV----------------------  276 (479)
T ss_pred             hhHHHHHHHHHHhCCCEEEEeccCCcc-----HHHHHHHHHHHHHCCC--CeEEeecc----------------------
Confidence            456789999999999997774321110     112333444443 233  23333232                      


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEA-FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~-~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                       ++.+..+.++++|+|.|.+-+..--+ -.+...+.++. .+..+.++.+.|++.|++|.+         +.+-.++..+
T Consensus       277 -~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~~p-~~~av~~~~~~~~~~~~~via---------~ggi~~~~~~  345 (479)
T PRK07807        277 -VTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVGRP-QFSAVLECAAAARELGAHVWA---------DGGVRHPRDV  345 (479)
T ss_pred             -CCHHHHHHHHHcCCCEEEECccCCcccccccccCCchh-HHHHHHHHHHHHHhcCCcEEe---------cCCCCCHHHH
Confidence             23458888999999999976643100 01122344442 566777888888899988751         3444455444


Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccE----EEEeCCCcCcHHHHHHH
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL----AVHLHDTYGQSLPNILI  367 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l----~vH~Hnd~GlA~ANaLa  367 (452)
                      .   + +..+||+.+.+.-            ++.. -.+.|...+    +-..-.-+||+..-++.
T Consensus       346 ~---~-al~~ga~~v~~g~------------~~ag-~~Espg~~~~~~~g~~~k~yrgmgs~~a~~  394 (479)
T PRK07807        346 A---L-ALAAGASNVMIGS------------WFAG-TYESPGDLMRDRDGRPYKESFGMASARAVA  394 (479)
T ss_pred             H---H-HHHcCCCeeeccH------------hhcc-CccCCCceEeccCCeEEEEeeccccHHHHh
Confidence            3   3 3347999988754            2222 233455222    22333468999766554

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=83.96  E-value=45  Score=32.67  Aligned_cols=217  Identities=10%  Similarity=-0.045  Sum_probs=117.0

Q ss_pred             CccEEEeCCccccCCCCCCC---CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe
Q 012949          125 RFVKIVEVGPRDGLQNEKNT---VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~---~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~  201 (452)
                      ++++|-...+-+|.-..=..   =+.++.+.-++.+...|+|.||.-...-..     .+.+++.+.++.+....++.+.
T Consensus         7 ~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~-----~~~~~~~~~~~~l~~~~~p~I~   81 (229)
T PRK01261          7 DKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD-----HSIESEPEIISALNEMDIDYIF   81 (229)
T ss_pred             CeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC-----CChHHHHHHHHHHhhcCCCEEE
Confidence            34666677776665322122   344555555677888899999997542211     1233333433333221223332


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      ..+.            ..+         .+-++.+.+.+++.|.|-...-                ..+     .+++.|
T Consensus        82 T~R~------------~~~---------~~~l~~a~~~~~d~vDIEl~~~----------------~~~-----~~~~~~  119 (229)
T PRK01261         82 TYRG------------VDA---------RKYYETAIDKMPPAVDLDINLI----------------GKL-----EFRPRN  119 (229)
T ss_pred             EEcC------------CCH---------HHHHHHHHhhCCCEEEEEcccc----------------hhh-----hhhcCC
Confidence            2111            011         1355667777788888765320                111     234567


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC--CCccEEEEeCCCcC
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYG  359 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~--p~~~l~vH~Hnd~G  359 (452)
                      .++.  +|+      |+ .+.+.+.++.+.+.+.|+|.+-++=+.  -++.++-.++..+.+..  ...++-.=+   +|
T Consensus       120 ~kvI--vS~------Ht-p~~eeL~~~l~~m~~~gaDI~KiAvmp--~~~~Dvl~~l~~~~~~~~~~~~p~i~is---MG  185 (229)
T PRK01261        120 TMLM--VSY------HT-NNSDNMPAILDIMNEKNPDYVKVACNY--NDNKKFVDDLQYILMKKDEKYKPIVFIP---MG  185 (229)
T ss_pred             CeEE--EEe------CC-CCHHHHHHHHHHHHHhCCCEEEEEeCC--CChHHHHHHHHHHHHHHhcCCCCEEEEE---CC
Confidence            7765  442      33 256889999999999999998887532  23333333332222211  222222211   44


Q ss_pred             cHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          360 QSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      - .-.=+++...|-...=+++.   + |-||   |+.+++++-..++.+++
T Consensus       186 ~-~iSRi~~~~fGS~lTyas~~---~-~sAP---GQi~v~~l~~~~~~~~~  228 (229)
T PRK01261        186 R-EFLRIFSGYYVSDIVYARYD---N-ETAP---GQPKRDYYESAFIKYGY  228 (229)
T ss_pred             c-HHHHHHHHHHCCceEEeeCC---C-CCCC---CCCCHHHHHHHHHHhcc
Confidence            4 34445566677665334443   4 4455   59999999999988765

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=83.83  E-value=25  Score=36.80  Aligned_cols=125  Identities=13%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHC-CcCEEEEcCCcCCCcHHHHHHHHH
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM-GCFEISLGDTIGVGTPGTVVPMLE  339 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~li~  339 (452)
                      .|.++..    ++++.+++.|++.. .++   |.|-.-+  + .+.++++.+.+. |...+.+ .|.|++.+..+.+   
T Consensus        90 ls~eei~----~~i~~~~~~Gv~~I-~~t---GGEPllr--~-dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~~---  154 (373)
T PLN02951         90 LSQDEIV----RLAGLFVAAGVDKI-RLT---GGEPTLR--K-DIEDICLQLSSLKGLKTLAM-TTNGITLSRKLPR---  154 (373)
T ss_pred             CCHHHHH----HHHHHHHHCCCCEE-EEE---CCCCcch--h-hHHHHHHHHHhcCCCceEEE-eeCcchHHHHHHH---
Confidence            4555554    44566667887531 122   3332212  2 366677777765 7766776 6999988765443   


Q ss_pred             HHHHh-CCCccEEEEeCC-----------CcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949          340 AVMAV-VPVEKLAVHLHD-----------TYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVYML  405 (452)
Q Consensus       340 ~l~~~-~p~~~l~vH~Hn-----------d~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNaalE~vv~~L  405 (452)
                       +++. +..+.|.++..+           ++...+.+.-+|.++|..  .|++++.- |.        -.-.+++++..+
T Consensus       155 -L~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~--------N~~Ei~~li~~a  224 (373)
T PLN02951        155 -LKEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF--------NDDEICDFVELT  224 (373)
T ss_pred             -HHhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC--------CHHHHHHHHHHH
Confidence             3332 223445555422           223445666667788875  34544431 22        113466777777


Q ss_pred             HcCCC
Q 012949          406 SGLGV  410 (452)
Q Consensus       406 ~~~Gi  410 (452)
                      +..|+
T Consensus       225 ~~~gi  229 (373)
T PLN02951        225 RDKPI  229 (373)
T ss_pred             HhCCC
Confidence            76664

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=83.77  E-value=26  Score=31.27  Aligned_cols=69  Identities=32%  Similarity=0.364  Sum_probs=41.6

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .+++|++.+++.|.+.... .            ...+.+.++++..++.|.. +.  |.  .|    +..+.+.    .+
T Consensus        45 ~v~aa~e~~adii~iSsl~-~------------~~~~~~~~~~~~L~~~g~~~i~--vi--vG----G~~~~~~----~~   99 (132)
T TIGR00640        45 IARQAVEADVHVVGVSSLA-G------------GHLTLVPALRKELDKLGRPDIL--VV--VG----GVIPPQD----FD   99 (132)
T ss_pred             HHHHHHHcCCCEEEEcCch-h------------hhHHHHHHHHHHHHhcCCCCCE--EE--Ee----CCCChHh----HH
Confidence            4566777888877775332 1            3456667788888888763 22  11  22    2222222    34


Q ss_pred             HHHHCCcCEEEEcCC
Q 012949          311 ELHDMGCFEISLGDT  325 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT  325 (452)
                      .+.++|++.+.-+-|
T Consensus       100 ~l~~~Gvd~~~~~gt  114 (132)
T TIGR00640       100 ELKEMGVAEIFGPGT  114 (132)
T ss_pred             HHHHCCCCEEECCCC
Confidence            578899998887765

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>PRK08898 coproporphyrinogen III oxidase; Provisional

Probab=83.76  E-value=52  Score=34.56  Aligned_cols=83  Identities=17%  Similarity=0.059  Sum_probs=56.4

Q ss_pred             HHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA-SASEAFSKSNINC--SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~--s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      .+.++...++|+++|.+-+ +.+|...+ .+|+  +.++    +.++++.+++.+..|.+.++  +|.|-.   +.+.+.
T Consensus       122 ~e~L~~l~~~GvnrisiGvQS~~~~~L~-~l~R~~~~~~----~~~~i~~~~~~~~~v~~dlI--~GlPgq---t~~~~~  191 (394)
T PRK08898        122 AEKFAQFRASGVNRLSIGIQSFNDAHLK-ALGRIHDGAE----ARAAIEIAAKHFDNFNLDLM--YALPGQ---TLDEAL  191 (394)
T ss_pred             HHHHHHHHHcCCCeEEEecccCCHHHHH-HhCCCCCHHH----HHHHHHHHHHhCCceEEEEE--cCCCCC---CHHHHH
Confidence            3588889999999999987 44444333 3333  4444    44556777776666766665  666654   467777


Q ss_pred             HHHHHHHHCCcCEEEE
Q 012949          307 YVAKELHDMGCFEISL  322 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L  322 (452)
                      +-++.+.+++++.|.+
T Consensus       192 ~~l~~~~~l~p~~is~  207 (394)
T PRK08898        192 ADVETALAFGPPHLSL  207 (394)
T ss_pred             HHHHHHHhcCCCEEEE
Confidence            7788889999987764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	452
2cw6_A	298	Crystal Structure Of Human Hmg-Coa Lyase: Insights		7e-95
3mp4_A	298	Crystal Structure Of Human Lyase R41m Mutant Length		4e-94
2ftp_A	302	Crystal Structure Of Hydroxymethylglutaryl-Coa Lyas		2e-79
1ydn_A	295	Crystal Structure Of The Hmg-Coa Lyase From Brucell		5e-68
1ydo_A	307	Crystal Structure Of The Bacillis Subtilis Hmg-Coa		1e-57
2nx9_A	464	Crystal Structure Of The Carboxyltransferase Domain		1e-07
1rqe_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		3e-05
3rmj_A	370	Crystal Structure Of Truncated Alpha-Isopropylmalat		3e-05
1s3h_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		3e-05
1u5j_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		3e-05
3ivs_A	423	Homocitrate Synthase Lys4 Length = 423		1e-04
3ivt_A	423	Homocitrate Synthase Lys4 Bound To 2-Og Length = 42		2e-04
3eeg_A	325	Crystal Structure Of A 2-Isopropylmalate Synthase F		2e-04
1rr2_A	473	Propionibacterium Shermanii Transcarboxylase 5s Sub		6e-04
1rqh_A	472	Propionibacterium Shermanii Transcarboxylase 5s Sub		6e-04

>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria Length = 298

Iteration: 1
 Score =  344 bits (882), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 177/323 (54%), Positives = 222/323 (68%), Gaps = 26/323 (8%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQXXXXXXXXXXX 242
            +V++ ++   G   PVLTPNLK             A+V +    V +            
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGF----------EAAVAAGAKEVVI------------ 99
Query: 243 XXXXXXSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
                 +ASE F+K NINCSIE+S  R+ A+  AA+  +I VRGYVSC +GCP EG I P
Sbjct: 100 ----FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISP 155
Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
           +KVA V K+ + MGC+EISLGDTIGVGTPG +  ML AVM  VP+  LAVH HDTYGQ+L
Sbjct: 156 AKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQAL 215
Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ A
Sbjct: 216 ANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEA 275
Query: 423 GDFINKHLGRPSGSKTAIALNRI 445
           G+FI + L R + SK A A  ++
Sbjct: 276 GNFICQALNRKTSSKVAQATCKL 298

>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant Length = 298

Iteration: 1
 Score =  341 bits (875), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 176/323 (54%), Positives = 221/323 (68%), Gaps = 26/323 (8%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGP DGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQXXXXXXXXXXX 242
            +V++ ++   G   PVLTPNLK             A+V +    V +            
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGF----------EAAVAAGAKEVVI------------ 99
Query: 243 XXXXXXSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
                 +ASE F+K NINCSIE+S  R+ A+  AA+  +I VRGYVSC +GCP EG I P
Sbjct: 100 ----FGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISP 155
Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
           +KVA V K+ + MGC+EISLGDTIGVGTPG +  ML AVM  VP+  LAVH HDTYGQ+L
Sbjct: 156 AKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQAL 215
Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ A
Sbjct: 216 ANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEA 275
Query: 423 GDFINKHLGRPSGSKTAIALNRI 445
           G+FI + L R + SK A A  ++
Sbjct: 276 GNFICQALNRKTSSKVAQATCKL 298

>pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From Pseudomonas Aeruginosa Length = 302

Iteration: 1
 Score =  293 bits (749), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 153/315 (48%), Positives = 201/315 (63%), Gaps = 26/315 (8%)
Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A +
Sbjct: 5   LPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64
Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQXXXXXXXXXXX 242
            +V   +R   G     L PNLK        F+    S +                    
Sbjct: 65  AEVFAGIRQRPGVTYAALAPNLKG-------FEAALESGVKE------------------ 99
Query: 243 XXXXXXSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
                 +ASEAFS+ NINCSI+DSL R+  V  AA+   + VRGY+SCV+GCP +G + P
Sbjct: 100 -VAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDP 158
Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
            +VA+VA+EL  MGC+E+SLGDTIGVGT G    ++EAV + VP E+LA H HDTYGQ+L
Sbjct: 159 RQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQAL 218
Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            NI  SL  GI+  D SVAGLGGCPYAKGA+GNVA+EDV+Y+L+GL + T VD+  L+ A
Sbjct: 219 ANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDA 278
Query: 423 GDFINKHLGRPSGSK 437
           G  I   LG+ +GS+
Sbjct: 279 GQRICAVLGKSNGSR 293

>pdb|1YDN|A Chain A, Crystal Structure Of The Hmg-Coa Lyase From Brucella Melitensis, Northeast Structural Genomics Target Lr35. Length = 295

Iteration: 1
 Score =  255 bits (651), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 143/299 (47%), Positives = 179/299 (59%), Gaps = 26/299 (8%)
Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVM 186
           V+IVE   RDGLQNEK  VPT  K+ LI RL   G   +EATSFVSPKWVPQLAD+R+V 
Sbjct: 5   VEIVEXAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVX 64
Query: 187 EAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQXXXXXXXXXXXXXXX 246
             +R  +G R  VL PN K          +  A+  +  + V++                
Sbjct: 65  AGIRRADGVRYSVLVPNXK--------GYEAAAAAHADEIAVFI---------------- 100
Query: 247 XXSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA 306
             SASE FSK+NINC+I +S+ R   V  AA    + +RGYVSCVV CP +G + P  VA
Sbjct: 101 --SASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVA 158
Query: 307 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL 366
            V ++L  +GC E+SLGDTIG GTP TV   L+AV+A+ P   LA H HDT G++L NI 
Sbjct: 159 SVTEQLFSLGCHEVSLGDTIGRGTPDTVAAXLDAVLAIAPAHSLAGHYHDTGGRALDNIR 218
Query: 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDF 425
           +SL+ G+   D SV GLGGCP+A GA GNV T  VV  L   G ET +DL +L  AG F
Sbjct: 219 VSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEXLHEXGFETGLDLDRLRSAGLF 277

>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase, Northeast Structural Genomics Target Sr181. Length = 307

Iteration: 1
 Score =  220 bits (561), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/314 (39%), Positives = 173/314 (55%), Gaps = 26/314 (8%)
Query: 124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR 183
           P+ V I EVGPRDGLQNE   + T  K+  I +L  +GL  +E TSFV PKW+P L DA 
Sbjct: 4   PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63
Query: 184 DVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQXXXXXXXXXXXX 243
           DV + +   +G     L PN +  L+ ++      A V  S                   
Sbjct: 64  DVAKGIDREKGVTYAALVPNQRG-LENALEGGINEACVFXS------------------- 103
Query: 244 XXXXXSASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS 303
                 ASE  ++ NIN S  +SL   + V + A+  ++  R Y+S V GCP E  +P  
Sbjct: 104 ------ASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIE 157
Query: 304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP 363
           +V  +++ L + G  E+SLGDTIG   P  V  +LEA++A  P  ++A+H HDT G +L 
Sbjct: 158 QVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALA 217
Query: 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAG 423
           N + +LQ GI+  D S  GLGGCPYA G+SGN ATED+VY L    ++TNV L KL+ A 
Sbjct: 218 NXVTALQXGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYXLEQXDIKTNVKLEKLLSAA 277
Query: 424 DFINKHLGRPSGSK 437
            +I +  G+P  S+
Sbjct: 278 KWIEEKXGKPLPSR 291

>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae Length = 464

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           VA++L ++G   I+L D  G+ TP     ++  +   V VE L +H H T G +   +L 
Sbjct: 163 VAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVE-LHLHCHSTAGLADMTLLK 221
Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           +++ G+  VD +++ + G        G+ ATE +V  L G G +T +D+ KL
Sbjct: 222 AIEAGVDRVDTAISSMSGT------YGHPATESLVATLQGTGYDTGLDIAKL 267

>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Bound To Oxaloacetate Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 366
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate Synthase From Neisseria Meningitidis Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 13/134 (9%)
Query: 314 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQ 370
           + G   I++ DT+G   P         ++A  P     V   H H+  G ++ N L +L+
Sbjct: 168 EAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALK 227
Query: 371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFI 426
            G   V+C+V GLG        +GN + E++V  L       G+ET +D  +++ +   +
Sbjct: 228 GGARQVECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLV 281
Query: 427 NKHLGRPSGSKTAI 440
           +   G P     AI
Sbjct: 282 STITGYPVQPNKAI 295

>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 366
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALXDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit, Met186ile Length = 539

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNIL 366
           +A +L DMG   I+L D   +  P     +++A+      + ++ +H H T G +  +++
Sbjct: 180 LAGQLLDMGADSIALXDIAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLM 239
Query: 367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
            +++ G+  VD +++ +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 240 KAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|3IVS|A Chain A, Homocitrate Synthase Lys4 Length = 423

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 369
           K +  +G   + + DT+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L
Sbjct: 187 KAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGXAIANAYCAL 245
Query: 370 QMGISTVDCSVAGLG 384
           + G + +D S+ G+G
Sbjct: 246 EAGATHIDTSILGIG 260

>pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og Length = 423

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL 369
           K +  +G   + + DT+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L
Sbjct: 187 KAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCAL 245
Query: 370 QMGISTVDCSVAGLG 384
           + G + +D S+ G+G
Sbjct: 246 EAGATHIDTSILGIG 260

>pdb|3EEG|A Chain A, Crystal Structure Of A 2-Isopropylmalate Synthase From Cytophaga Hutchinsonii Length = 325

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 294 CPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKL 350
           C   G    + +A   + + + G   +++ DT G   P   G  +  L   ++ +    L
Sbjct: 142 CEDAGRADQAFLARXVEAVIEAGADVVNIPDTTGYXLPWQYGERIKYLXDNVSNIDKAIL 201
Query: 351 AVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYML----S 406
           + H H+  G +  N L +LQ G   V+C++ G+G        +GN A E+VV        
Sbjct: 202 SAHCHNDLGLATANSLAALQNGARQVECTINGIG------ERAGNTALEEVVXAXECHKE 255
Query: 407 GLGVETNVDLRKLM 420
            LG+ET ++ +KL+
Sbjct: 256 TLGLETGINHKKLV 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	1e-179
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	1e-177
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	1e-177
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	1e-174
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	2e-14
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	5e-11
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	2e-08
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	3e-07
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	4e-07
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	7e-07
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	2e-06
3ble_A	337	Citramalate synthase from leptospira interrogans;	8e-06
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	1e-05
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	9e-05
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	2e-04
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	3e-04
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	8e-04

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298

 Score =  501 bits (1292), Expect = e-179
 Identities = 188/323 (58%), Positives = 231/323 (71%), Gaps = 26/323 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ VKIVEVGPRDGLQNEKN V T VK++LI  L  +GL V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
            +V++ ++   G   PVLTPNLK                          GFEAA+AAGAK
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLK--------------------------GFEAAVAAGAK 95

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           EV IF +ASE F+K NINCSIE+S  R+ A+  AA+  +I VRGYVSC +GCP EG I P
Sbjct: 96  EVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISP 155

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
           +KVA V K+ + MGC+EISLGDTIGVGTPG +  ML AVM  VP+  LAVH HDTYGQ+L
Sbjct: 156 AKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQAL 215

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            N L++LQMG+S VD SVAGLGGCPYA+GASGN+ATED+VYML GLG+ T V+L+KL+ A
Sbjct: 216 ANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEA 275

Query: 423 GDFINKHLGRPSGSKTAIALNRI 445
           G+FI + L R + SK A A  ++
Sbjct: 276 GNFICQALNRKTSSKVAQATCKL 298

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307

 Score =  498 bits (1284), Expect = e-177
 Identities = 129/322 (40%), Positives = 180/322 (55%), Gaps = 26/322 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
            P+ V I EVGPRDGLQNE   + T  K+  I +L  +GL  +E TSFV PKW+P L DA
Sbjct: 3   YPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDA 62

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
            DV + +   +G     L PN +                          G E A+  G  
Sbjct: 63  IDVAKGIDREKGVTYAALVPNQR--------------------------GLENALEGGIN 96

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           E  +F SASE  ++ NIN S  +SL   + V + A+  ++  R Y+S V GCP E  +P 
Sbjct: 97  EACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPI 156

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
            +V  +++ L + G  E+SLGDTIG   P  V  +LEA++A  P  ++A+H HDT G +L
Sbjct: 157 EQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTAL 216

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            N++ +LQMGI+  D S  GLGGCPYA G+SGN ATED+VYML  + ++TNV L KL+ A
Sbjct: 217 ANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSA 276

Query: 423 GDFINKHLGRPSGSKTAIALNR 444
             +I + +G+P  S+       
Sbjct: 277 AKWIEEKMGKPLPSRNLQVFKS 298

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302

 Score =  496 bits (1279), Expect = e-177
 Identities = 166/320 (51%), Positives = 215/320 (67%), Gaps = 26/320 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +P+ V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A +
Sbjct: 5   LPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
            +V   +R   G     L PNLK                          GFEAA+ +G K
Sbjct: 65  AEVFAGIRQRPGVTYAALAPNLK--------------------------GFEAALESGVK 98

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           EVA+FA+ASEAFS+ NINCSI+DSL R+  V  AA+   + VRGY+SCV+GCP +G + P
Sbjct: 99  EVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDP 158

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
            +VA+VA+EL  MGC+E+SLGDTIGVGT G    ++EAV + VP E+LA H HDTYGQ+L
Sbjct: 159 RQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQAL 218

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            NI  SL  GI+  D SVAGLGGCPYAKGA+GNVA+EDV+Y+L+GL + T VD+  L+ A
Sbjct: 219 ANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDA 278

Query: 423 GDFINKHLGRPSGSKTAIAL 442
           G  I   LG+ +GS+ A AL
Sbjct: 279 GQRICAVLGKSNGSRAAKAL 298

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295

 Score =  488 bits (1259), Expect = e-174
 Identities = 155/321 (48%), Positives = 196/321 (61%), Gaps = 27/321 (8%)

Query: 123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           +   V+IVE+  RDGLQNEK  VPT  K+ LI RL   G   +EATSFVSPKWVPQLAD+
Sbjct: 1   MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADS 60

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
           R+VM  +R  +G R  VL PN+K                          G+EAA AA A 
Sbjct: 61  REVMAGIRRADGVRYSVLVPNMK--------------------------GYEAAAAAHAD 94

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP 302
           E+A+F SASE FSK+NINC+I +S+ R   V  AA    + +RGYVSCVV CP +G + P
Sbjct: 95  EIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTP 154

Query: 303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL 362
             VA V ++L  +GC E+SLGDTIG GTP TV  ML+AV+A+ P   LA H HDT G++L
Sbjct: 155 QAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRAL 214

Query: 363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLA 422
            NI +SL+ G+   D SV GLGGCP+A GA GNV T  VV ML  +G ET +DL +L  A
Sbjct: 215 DNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSA 274

Query: 423 GDFINKHLGRPSGSKTAIALN 443
           G F  + L +   +      +
Sbjct: 275 GLFT-QALRQDKAALEHHHHH 294

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 62/317 (19%), Positives = 109/317 (34%), Gaps = 60/317 (18%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT------SFVSPKWVPQLA 180
           + I +V  RDG    ++         + R L  + +  +E                 +  
Sbjct: 9   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 68

Query: 181 DARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA 239
           D   +     ++  A++  L  P +  +                          + A  A
Sbjct: 69  DLEYIEAVAGEISHAQIATLLLPGIGSV-----------------------HDLKNAYQA 105

Query: 240 GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEG 298
           GA+ V +             +C+  D  V  + + +A        R      VG   +  
Sbjct: 106 GARVVRVA-----------THCTEAD--VSKQHIEYA--------RNLGMDTVGFLMMSH 144

Query: 299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDT 357
            IP  K+A   K +   G   I + D+ G  +   +   + A  AV+  E ++ +H H  
Sbjct: 145 MIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHN 204

Query: 358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLR 417
               + N +++++ G   VD S+AG+G      GA GN   E  + +   LG     DL 
Sbjct: 205 LSLGVANSIVAVEEGCDRVDASLAGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLY 258

Query: 418 KLM-LAGDFINKHLGRP 433
            LM  A D +     RP
Sbjct: 259 TLMDAADDIVRPLQDRP 275

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 29/128 (22%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 301 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ 360
                     +  D       + D+ G  TP  V  +L+ V     V  +  H HD    
Sbjct: 141 AEMNGFLSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQL 199

Query: 361 SLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLM 420
            L N + ++  GI  +D ++ G+G     +GA GN+  E ++  L+      NVD   L 
Sbjct: 200 GLINSITAIDDGIDFIDATITGMG-----RGA-GNLKMELLLTYLN-KHHGLNVDFNVLG 252

Query: 421 LAGDFINK 428
                   
Sbjct: 253 NIITTFTP 260

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539

 Score = 55.3 bits (134), Expect = 2e-08
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 21/122 (17%)

Query: 307 YV--AKELHDMGCFEISLGDTIGVGTP---GTVVPML-EAVMAVVPVEKLAVHLHDTYGQ 360
           YV  A +L DMG   I+L D   +  P     ++  + +       +    +H H T G 
Sbjct: 177 YVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQIN---LHCHSTTGV 233

Query: 361 SLPNILISLQMGISTVDCSV---AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLR 417
           +  +++ +++ G+  VD ++   +   G            TE V  ML G G  TN+D  
Sbjct: 234 TEVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESVAEMLEGTGYTTNLDYD 284

Query: 418 KL 419
           +L
Sbjct: 285 RL 286

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464

 Score = 51.4 bits (124), Expect = 3e-07
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 19/120 (15%)

Query: 307 YV--AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSL 362
           +V  A++L ++G   I+L D  G+ TP     ++  +   V   +    +H H T G + 
Sbjct: 160 WVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVDVELH---LHCHSTAGLAD 216

Query: 363 PNILISLQMGISTVDCSV---AGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
             +L +++ G+  VD ++   +G  G P         ATE +V  L G G +T +D+ KL
Sbjct: 217 MTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLVATLQGTGYDTGLDIAKL 267

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 26/141 (18%)

Query: 296 VEGAI--------PPSKV----AYV--AKELHDMGCFEISLGDTIGVGTP---GTVVPML 338
           VE AI        P         Y+  A+EL   G   + + D  G+  P     +V  L
Sbjct: 240 VEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSL 299

Query: 339 EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVAT 398
                 +P+    +H HDT G  +  +L   Q G   VD +   + G       +   + 
Sbjct: 300 RDRFPDLPLH---IHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGM------TSQPSM 350

Query: 399 EDVVYMLSGLGVETNVDLRKL 419
             +V    G  ++T V + ++
Sbjct: 351 GALVACTRGTPLDTEVPMERV 371

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 324 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 383
           DT+G  TP  V  ++  +  VV  + +  H H+  G ++ N   +L+ G + +D S+ G+
Sbjct: 201 DTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGATHIDTSILGI 259

Query: 384 GGCPYAKGASGNVATEDVV---YMLSGLGVETNVDLRKLMLAGDFINKHLGRP 433
           G        +G      ++   Y+     +     L +L    + +   +   
Sbjct: 260 G------ERNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQ 306

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 26/114 (22%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 324 DTIGVGTPGTVVPMLEAVMAVVPVE-KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG 382
           DT+GV TP  V  ++  V  VV     +  H H+  G ++ N   +++ G + VD ++ G
Sbjct: 165 DTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILG 224

Query: 383 LGGCPYAKGASGNVATEDVV---YMLSGLGVETNVDLRKLMLAGDFINKHLGRP 433
           +G        +G       +   Y L    V     L  L      + + +G  
Sbjct: 225 IG------ERNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVE 272

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337

 Score = 46.8 bits (112), Expect = 8e-06
 Identities = 23/98 (23%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 324 DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL 383
           DT+GV +P      +++++   P      H H+ Y  S+ N L +++ G+  +  S+ GL
Sbjct: 190 DTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGL 249

Query: 384 GGCPYAKGASGNVATEDVVYML-SGLGVETNVDLRKLM 420
           G        +GN   E +V  +      +TN++   + 
Sbjct: 250 G------ERAGNTPLEALVTTIHDKSNSKTNINEIAIT 281

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 24/112 (21%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI 367
           +AKEL   G   +++ D  G+  P     ++  + + V +  + +H HDT G  L     
Sbjct: 697 LAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDL-PIHLHTHDTSGNGLLTYKQ 755

Query: 368 SLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           ++  G+  +D +VA + G   ++ ++ +     + Y L+G       D+  +
Sbjct: 756 AIDAGVDIIDTAVASMSGL-TSQPSANS-----LYYALNGFPRHLRTDIEGM 801

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPNI 365
           +A EL   G   I++ D  G+  P     + +A+      P+     H HDT G +   +
Sbjct: 714 LAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIH---FHTHDTSGIAAATV 770

Query: 366 LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL 419
           L +++ G+  VD ++  L G   ++   G      +V  LSG   +  +D   +
Sbjct: 771 LAAVEAGVDAVDAAMDALSGN-TSQPCLG-----SIVEALSGSERDPGLDPAWI 818

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 13/121 (10%)

Query: 320 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 376
           +++ DT G   P      ++ +M  V  ++K  L+ H H+  G +  N L +LQ G   V
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227

Query: 377 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLMLAGDFINKHLGR 432
           +C++ G+G        +GN A E+VV  +      LG+ET ++ +KL+     ++  +  
Sbjct: 228 ECTINGIG------ERAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRM 281

Query: 433 P 433
            
Sbjct: 282 Q 282

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 13/108 (12%)

Query: 320 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 376
           I++ DT+G   P         ++A  P   K   + H H+  G ++ N L +L+ G   V
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233

Query: 377 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLM 420
           +C+V GLG        +GN + E++V  L       G+ET +D  +++
Sbjct: 234 ECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTTQIV 275

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293

 Score = 40.2 bits (95), Expect = 8e-04
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 13/108 (12%)

Query: 320 ISLGDTIGVGTPGTVVPMLEAVMAVVP-VEK--LAVHLHDTYGQSLPNILISLQMGISTV 376
           I++ DT+G   P     + + +   +   +    A H HD  G +  N L +++ G   V
Sbjct: 167 INIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRV 226

Query: 377 DCSVAGLGGCPYAKGASGNVATEDVVYML----SGLGVETNVDLRKLM 420
           + ++ G+G        +GN A E+V   L         ETN+ L +  
Sbjct: 227 EGTINGIG------ERAGNTALEEVAVALHIRKDFYQAETNIVLNQFK 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	100.0
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	100.0
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	100.0
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	100.0
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	100.0
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	100.0
3ble_A	337	Citramalate synthase from leptospira interrogans;	100.0
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	100.0
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	100.0
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	100.0
3hq1_A	644	2-isopropylmalate synthase; LEUA, mycobacterium tu	100.0
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	100.0
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	100.0
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	100.0
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	100.0
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	100.0
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	100.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	100.0
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.65
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	98.59
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.23
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.14
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.11
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.07
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	98.05
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	97.72
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	97.72
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	97.59
3oa3_A	288	Aldolase; structural genomics, seattle structural	97.57
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	97.45
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	97.16
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	96.97
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	96.97
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	96.88
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	96.87
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	96.85
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	96.85
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	96.83
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	96.81
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.81
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	96.81
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	96.8
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	96.8
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	96.8
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.8
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	96.77
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	96.75
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	96.72
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	96.67
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	96.64
2q02_A	272	Putative cytoplasmic protein; structural genomics,	96.62
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	96.62
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	96.6
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	96.58
3kws_A	287	Putative sugar isomerase; structural genomics, joi	96.58
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	96.51
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.51
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	96.5
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	96.47
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	96.46
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	96.45
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	96.38
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	96.36
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	96.35
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	96.34
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.32
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	96.3
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.3
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	96.3
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	96.29
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	96.25
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	96.24
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	96.23
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	96.18
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	96.08
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	96.06
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	96.03
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.95
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	95.91
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.91
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	95.89
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	95.87
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	95.85
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	95.8
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	95.79
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.78
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	95.76
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	95.73
3eol_A	433	Isocitrate lyase; seattle structural center for in	95.61
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	95.56
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	95.54
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	95.52
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	95.5
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	95.41
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	95.39
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	95.36
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	95.36
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	95.3
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	95.22
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	95.2
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	95.2
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	95.19
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	95.16
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	95.14
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	95.1
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	95.1
1tv8_A	340	MOAA, molybdenum cofactor biosynthesis protein A;	95.1
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	95.07
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	95.03
3elf_A	349	Fructose-bisphosphate aldolase; zinc enzyme, dihyd	95.02
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	94.99
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	94.96
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	94.94
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	94.92
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.86
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	94.83
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	94.67
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.65
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	94.59
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	94.56
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	94.54
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	94.54
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	94.53
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	94.51
2hk0_A	309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	94.46
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	94.4
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	94.35
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	94.2
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	94.19
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	94.17
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	94.11
1dos_A	358	Aldolase class II; lyase, classii fructose 1,6-bis	94.06
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	94.01
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	94.01
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	94.0
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	93.95
3oa3_A	288	Aldolase; structural genomics, seattle structural	93.91
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.89
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	93.89
3u0h_A	281	Xylose isomerase domain protein; structural genomi	93.88
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	93.85
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	93.85
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	93.81
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	93.78
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	93.78
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	93.75
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	93.74
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	93.69
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	93.65
2qw5_A	335	Xylose isomerase-like TIM barrel; putative sugar p	93.64
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	93.64
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.53
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	93.45
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.38
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	93.37
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	93.2
3qm3_A	357	Fructose-bisphosphate aldolase; structural genomic	93.19
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	93.18
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	93.17
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	93.16
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	93.08
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	93.06
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	93.06
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	93.05
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	93.02
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	93.01
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	92.87
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	92.81
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	92.79
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	92.77
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	92.75
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	92.69
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	92.69
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	92.67
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	92.6
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	92.56
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	92.5
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	92.5
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	92.48
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	92.47
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	92.44
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	92.34
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	92.3
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	92.27
3pao_A	326	Adenosine deaminase; structural genomics, PSI-2, p	92.15
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	92.12
1bxb_A	387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	92.09
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	91.99
3iar_A	367	Adenosine deaminase; purine metabolism structural	91.79
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	91.71
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	91.7
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	91.63
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	91.63
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	91.59
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	91.57
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	91.56
2h9a_A	445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	91.51
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	91.48
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	91.47
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	91.45
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	91.42
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	91.24
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	91.22
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	91.08
3ktc_A	333	Xylose isomerase; putative sugar isomerase, struct	91.06
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	91.02
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	90.97
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	90.95
2bmb_A	545	Folic acid synthesis protein FOL1; folate biosynth	90.87
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	90.7
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	90.68
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	90.68
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	90.54
3ayv_A	254	Putative uncharacterized protein TTHB071; structur	90.52
2pgf_A	371	Adenosine deaminase; metallo-dependent hydrolase,	90.46
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	90.45
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	90.45
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	90.4
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	90.29
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	90.22
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	90.21
2a5h_A	416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	90.18
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	90.08
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	90.05
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	90.03
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	90.02
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	89.97
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	89.96
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	89.92
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	89.91
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	89.91
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	89.84
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	89.83
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	89.83
1xim_A	393	D-xylose isomerase; isomerase(intramolecular oxido	89.82
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	89.79
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	89.71
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	89.69
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	89.66
4gxw_A	380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	89.66
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	89.64
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	89.61
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	89.29
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	89.27
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	89.21
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	89.19
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	89.11
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	89.05
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	89.04
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	89.0
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	88.98
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	88.98
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	88.89
3cny_A	301	Inositol catabolism protein IOLE; xylose isomerase	88.8
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	88.71
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	88.7
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	88.67
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	88.59
1viz_A	240	PCRB protein homolog; structural genomics, unknown	88.58
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	88.45
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	88.43
3bdk_A	386	D-mannonate dehydratase; xylose isomerase-like TIM	88.41
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	88.37
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	88.31
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	88.28
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	88.27
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	88.19
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	88.18
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	88.17
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	88.17
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	88.15
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	88.14
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	88.08
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	88.08
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	87.97
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	87.93
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	87.91
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	87.9
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	87.86
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	87.8
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	87.75
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	87.71
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	87.66
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	87.61
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	87.51
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	87.46
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	87.41
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	87.37
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	87.36
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	87.29
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	87.24
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	87.23
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	87.12
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	87.12
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	87.07
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	87.07
3qtg_A	461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	87.01
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	86.93
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	86.9
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	86.89
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	86.84
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	86.78
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	86.67
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	86.65
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	86.65
3kws_A	287	Putative sugar isomerase; structural genomics, joi	86.63
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	86.54
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	86.51
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	86.46
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	86.41
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	86.4
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	86.37
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	86.33
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	86.32
1muw_A	386	Xylose isomerase; atomic resolution, disorder; 0.8	86.26
2yx0_A	342	Radical SAM enzyme; predicted tRNA modification en	86.25
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	86.08
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	86.05
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	86.04
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	86.03
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	85.97
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	85.96
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	85.92
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	85.92
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	85.91
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	85.88
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	85.71
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	85.68
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	85.68
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	85.59
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	85.51
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	85.5
1e0t_A	470	Pyruvate kinase, PK; phosphotransferase, glycolysi	85.21
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.09
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.0
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	84.97
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	84.9
2eja_A	338	URO-D, UPD, uroporphyrinogen decarboxylase; dimer,	84.76
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	84.74
2y7e_A	282	3-keto-5-aminohexanoate cleavage enzyme; lyase, al	84.64
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	84.59
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	84.58
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	84.49
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	84.43
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	84.4
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	84.37
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	84.32
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	84.31
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	84.29
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	84.14
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	84.04
3gg8_A	511	Pyruvate kinase; malaria, genomics, proteomics, gl	84.01
3e49_A	311	Uncharacterized protein DUF849 with A TIM barrel;	83.97
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	83.96
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	83.88
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	83.78
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	83.77
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	83.75
3khd_A	520	Pyruvate kinase; malaria, structural genomics, str	83.69
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	83.62
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	83.6
3hqn_D	499	Pyruvate kinase, PK; TIM barrel, T-state enzyme, t	83.58
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	83.57
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	83.54
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	83.41
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	83.41
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	83.25
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	83.2
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	83.13
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	83.13
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	83.11
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	83.09
2ash_A	381	Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan	83.07
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	83.02
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	82.92
2q02_A	272	Putative cytoplasmic protein; structural genomics,	82.84
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	82.82
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	82.71
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	82.68
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	82.66
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	82.66
1r3s_A	367	URO-D, uroporphyrinogen decarboxylase, UPD; uropor	82.64
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	82.62
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	82.56
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	82.56
2zds_A	340	Putative DNA-binding protein; TIM-barrel fold, str	82.55
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	82.55
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	82.47
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	82.39
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	82.35
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	82.34
3e02_A	311	Uncharacterized protein DUF849; structural genomic	82.25
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	82.0
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	81.95
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	81.9
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	81.78
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	81.72
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	81.58
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	81.55
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	81.5
1egz_A	291	Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL	81.45
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	81.4
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	81.36
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	81.36
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	81.09
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	81.01
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	80.98
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	80.93
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	80.87
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	80.7
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	80.67
3nzq_A	666	ADC, biosynthetic arginine decarboxylase; alpha-be	80.6
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	80.52
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	80.44
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	80.36
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	80.2
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	80.03

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=100.00  E-value=1e-72  Score=566.56  Aligned_cols=300  Identities=43%  Similarity=0.727  Sum_probs=287.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      +|++|+|+|+|||||+|+++..|++++|++|++.|+++||++||+|||++|+++|++.|.++++..+++.+++++++|+|
T Consensus         3 ~~~~v~i~DtTlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~   82 (307)
T 1ydo_A            3 YPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALVP   82 (307)
T ss_dssp             CCSBCEEEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEECC
T ss_pred             CCCceEEEECCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEeC
Confidence            78899999999999999999999999999999999999999999999999999999999998888777667889999988


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      +.+                          ++++|+++|++.|++|.++||.|++.|+|+|++++++++.+++++||++|+
T Consensus        83 ~~~--------------------------~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~  136 (307)
T 1ydo_A           83 NQR--------------------------GLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANL  136 (307)
T ss_dssp             SHH--------------------------HHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHH--------------------------hHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC
Confidence            754                          899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      +|+++|+++|+||++++++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++|+++|++|+|||+|||+
T Consensus       137 ~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~  216 (307)
T 1ydo_A          137 TTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTAL  216 (307)
T ss_dssp             EEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHH
T ss_pred             EEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCccccc
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIAL  442 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~G  442 (452)
                      ||+++|+++||++||+|++|||||||||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|++.|.+|
T Consensus       217 AN~laAv~aGa~~vd~tv~GlGecp~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~~~~~~~~  296 (307)
T 1ydo_A          217 ANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVF  296 (307)
T ss_dssp             HHHHHHHHHTCCEEEEBGGGCCEETTEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEcccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             chhhhh
Q 012949          443 NRIAAD  448 (452)
Q Consensus       443 ~~vf~h  448 (452)
                      .....|
T Consensus       297 ~~~~~~  302 (307)
T 1ydo_A          297 KSSLEH  302 (307)
T ss_dssp             TC----
T ss_pred             HHhhhh
Confidence            766554

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=100.00  E-value=3.1e-70  Score=545.91  Aligned_cols=297  Identities=63%  Similarity=1.021  Sum_probs=286.3

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe
Q 012949          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (452)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~  201 (452)
                      .+|++|+|+|+|||||+|+++..|++++|++|++.|+++||++||+|+|++|+++|++.|.+++++.+++.+++++++++
T Consensus         1 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~   80 (298)
T 2cw6_A            1 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT   80 (298)
T ss_dssp             CCCSBCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC
T ss_pred             CCCCceEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc
Confidence            46889999999999999999999999999999999999999999999999999999999998888888777788888888


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      ++.+                          ++++|+++|++.|+++.++||.|++.|+++|++++++.+.+++++||++|
T Consensus        81 ~~~~--------------------------~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G  134 (298)
T 2cw6_A           81 PNLK--------------------------GFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSAN  134 (298)
T ss_dssp             CSHH--------------------------HHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHH--------------------------hHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence            7654                          89999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ++|+++++++||||++++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||
T Consensus       135 ~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla  214 (298)
T 2cw6_A          135 ISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQA  214 (298)
T ss_dssp             CEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCH
T ss_pred             CeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999889999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  441 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~  441 (452)
                      +||+++|+++||++||+|++|+|||||||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|+++|.+
T Consensus       215 ~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~  294 (298)
T 2cw6_A          215 LANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQA  294 (298)
T ss_dssp             HHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred             HHHHHHHHHhCCCEEEeecccccCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cch
Q 012949          442 LNR  444 (452)
Q Consensus       442 G~~  444 (452)
                      |..
T Consensus       295 ~~~  297 (298)
T 2cw6_A          295 TCK  297 (298)
T ss_dssp             HC-
T ss_pred             hcc
Confidence            853

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=3.7e-69  Score=539.19  Aligned_cols=295  Identities=56%  Similarity=0.951  Sum_probs=283.9

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe
Q 012949          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (452)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~  201 (452)
                      ++|++|+|+|+|||||+|+++..|++++|++|++.|+++|+++||+|+|++|+++|++.|.++++..+.+.+++++++++
T Consensus         4 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   83 (302)
T 2ftp_A            4 NLPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA   83 (302)
T ss_dssp             CCCSBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC
T ss_pred             CCCCCcEEEeCCCCCCccCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe
Confidence            47899999999999999999999999999999999999999999999999999999999988877777666778888888


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      ++.+                          ++++|+++|++.|++|++.||.|++.|+|+|++++++++.+++++||++|
T Consensus        84 ~~~~--------------------------~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G  137 (302)
T 2ftp_A           84 PNLK--------------------------GFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQ  137 (302)
T ss_dssp             CSHH--------------------------HHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHH--------------------------HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCC
Confidence            7544                          99999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ++|+++|+++|++|++++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||
T Consensus       138 ~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla  217 (302)
T 2ftp_A          138 VRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQA  217 (302)
T ss_dssp             CEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCH
T ss_pred             CeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998789999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  441 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~  441 (452)
                      +||+++|+++||+.||+|++|||||||||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|+++|.+
T Consensus       218 ~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~  297 (302)
T 2ftp_A          218 LANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKA  297 (302)
T ss_dssp             HHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred             HHHHHHHHHhCCCEEEecccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCccchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             c
Q 012949          442 L  442 (452)
Q Consensus       442 G  442 (452)
                      +
T Consensus       298 ~  298 (302)
T 2ftp_A          298 L  298 (302)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=100.00  E-value=5.1e-67  Score=537.08  Aligned_cols=288  Identities=21%  Similarity=0.312  Sum_probs=262.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      +|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||++.   |  .|.+.+.+..+.++++++++|++
T Consensus         9 ~~~~v~I~DtTLRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~r   83 (370)
T 3rmj_A            9 QTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAAS---P--GDFEAVNAIAKTITKSTVCSLSR   83 (370)
T ss_dssp             -CCBCEEEECCCCCCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEEEEGGGC---H--HHHHHHHHHHTTCSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhCCCCeEEEEec
Confidence            688999999999999999999999999999999999999999999998643   2  35555555555677889999886


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHH----cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIA----AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK  278 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~----~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak  278 (452)
                      ...                         +++++|++    +|+++|++|.++||.|++.|+|+|++++++++.+++++||
T Consensus        84 ~~~-------------------------~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~  138 (370)
T 3rmj_A           84 AIE-------------------------RDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAR  138 (370)
T ss_dssp             SSH-------------------------HHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred             CCH-------------------------HHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            433                         36777766    8999999999999999999999999999999999999999


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeC
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLH  355 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~H  355 (452)
                      ++|..|.      |+||++++++++++.++++.+.++||++|+|+||+|+++|.+++++|+.+++++|.   ++|++|+|
T Consensus       139 ~~g~~v~------~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~H  212 (370)
T 3rmj_A          139 EYTDDVE------FSCEDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCH  212 (370)
T ss_dssp             TTCSCEE------EEEETGGGSCHHHHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECB
T ss_pred             HcCCEEE------EecCCCCccCHHHHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeC
Confidence            9999876      67899999999999999999999999999999999999999999999999999996   78999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhC
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g  431 (452)
                      ||+|||+||+++|+++||++||+||+||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|
T Consensus       213 nd~GlAvAN~laAv~aGa~~vd~tv~GlGe------raGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g  286 (370)
T 3rmj_A          213 NDLGLAVANSLAALKGGARQVECTVNGLGE------RAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITG  286 (370)
T ss_dssp             CTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHHHHhCCCEEEEeccccCc------ccccccHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999      9999999999999974    599999999999999999999999


Q ss_pred             CCCCCCcccccchhhhhccCC
Q 012949          432 RPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       432 ~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +++|+++|++|+++|+|+|||
T Consensus       287 ~~~~~~~p~vG~~aF~h~sGi  307 (370)
T 3rmj_A          287 YPVQPNKAIVGANAFSHESGI  307 (370)
T ss_dssp             CCCCSSCTTTSTTTTC-----
T ss_pred             CCCCCCCCccchhHHHhcccc
Confidence            999999999999999999998

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=2e-67  Score=532.00  Aligned_cols=289  Identities=24%  Similarity=0.292  Sum_probs=236.2

Q ss_pred             CCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe
Q 012949          122 GIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT  201 (452)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~  201 (452)
                      .+|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||++.   |  .|.+.+.+..+..+++++++|+
T Consensus         2 ~~~~~v~I~DttlRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~   76 (325)
T 3eeg_A            2 SLGKRIFVFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAGFPVSS---P--GDFNSVVEITKAVTRPTICALT   76 (325)
T ss_dssp             --CEECEEEECGGGCC-------CCTTHHHHHHHHHHHHTCSEEEEECTTSC---H--HHHHHHHHHHHHCCSSEEEEEC
T ss_pred             CCCCceEEEECCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--hHHHHHHHHHHhCCCCEEEEee
Confidence            4788999999999999999999999999999999999999999999998632   2  2444444444456889999998


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc----CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA----GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~----Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++.+                         +++++|+++    |+++|++|+++||.|++.|+|+|++++++++.+++++|
T Consensus        77 r~~~-------------------------~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a  131 (325)
T 3eeg_A           77 RAKE-------------------------ADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQA  131 (325)
T ss_dssp             CSCH-------------------------HHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHH
T ss_pred             cCCH-------------------------HHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            6544                         378888887    99999999999999999999999999999999999999


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEe
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHL  354 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~  354 (452)
                      |+.|+.|.      |+||+.++++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.+++++|+   ++|++|+
T Consensus       132 ~~~g~~v~------f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~  205 (325)
T 3eeg_A          132 KKVVHEVE------FFCEDAGRADQAFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHC  205 (325)
T ss_dssp             HTTSSEEE------EEEETGGGSCHHHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECB
T ss_pred             HHCCCEEE------EEccccccchHHHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEe
Confidence            99999875      77899999999999999999999999999999999999999999999999999996   7899999


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHh
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      |||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++
T Consensus       206 Hnd~GlA~AN~laA~~aGa~~vd~tv~GlGe------r~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~  279 (325)
T 3eeg_A          206 HNDLGLATANSLAALQNGARQVECTINGIGE------RAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLM  279 (325)
T ss_dssp             CCTTSCHHHHHHHHHHHTCCEEEEBGGGCCS------TTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHhCCCEEEEecccccc------cccchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999      9999999999999984    69999999999999999999999


Q ss_pred             CCCCCCCcccccchhhhhccCC
Q 012949          431 GRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       431 g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      |+++|+++|++|+++|+|+|||
T Consensus       280 g~~~~~~~p~vG~~af~h~sGi  301 (325)
T 3eeg_A          280 RMQVQSNKAIVGRNAFAHSSGI  301 (325)
T ss_dssp             TC--------------------
T ss_pred             CCCCCCCCCccchhHHHHhccc
Confidence            9999999999999999999997

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=100.00  E-value=3.5e-65  Score=508.10  Aligned_cols=289  Identities=53%  Similarity=0.849  Sum_probs=273.2

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      +|++|+|+|||||||.|+++..|++++|++|++.|+++|+++||+|+|++++|+|+++|..++++.+++.++++++++++
T Consensus         1 ~~~~v~i~d~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~   80 (295)
T 1ydn_A            1 MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVP   80 (295)
T ss_dssp             -CCBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECS
T ss_pred             CCCceEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeC
Confidence            57899999999999999999999999999999999999999999999999999999998888888777666888888887


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      +.+                          ++++|+++|++.|++++++||.|.+.|++++++++++++.+++++||+.|+
T Consensus        81 n~~--------------------------~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~  134 (295)
T 1ydn_A           81 NMK--------------------------GYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGL  134 (295)
T ss_dssp             SHH--------------------------HHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             CHH--------------------------HHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC
Confidence            654                          899999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      +|+++|+++||||++++++++++.++++.+.++|++.|+|+||+|.++|.+++++++.+++.+|.++|++|+|||+|||+
T Consensus       135 ~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~  214 (295)
T 1ydn_A          135 AIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRAL  214 (295)
T ss_dssp             EEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHH
T ss_pred             eEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987789999999999999


Q ss_pred             HHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCC
Q 012949          363 PNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSK  437 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~  437 (452)
                      ||+++|+++||+.||+|++|+|||||||||+||++||+|+++|+.+|+++++|+++|.++++++++..+.+.+..
T Consensus       215 an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~~  289 (295)
T 1ydn_A          215 DNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAALE  289 (295)
T ss_dssp             HHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHhCCCEEEeccccCCCCCCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999887754

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=100.00  E-value=1.8e-65  Score=520.02  Aligned_cols=295  Identities=18%  Similarity=0.218  Sum_probs=263.0

Q ss_pred             hcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHH-HHHHCCCCEEEEecCCC-C---CcccccCCHHHHHHHHHhccC
Q 012949          120 LKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIR-RLVSSGLPVVEATSFVS-P---KWVPQLADARDVMEAVRDLEG  194 (452)
Q Consensus       120 ~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~-~L~~~Gv~~IEvG~~~s-~---~~~p~~~D~e~v~~~i~~~~~  194 (452)
                      |..+|++|+|+|||||||+|++++.|++++|++|++ .|+++||++||+|+|++ |   +++|++++..+   .+..+++
T Consensus        13 ~~~~~~~v~I~DtTlRDG~Q~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~~~~~~v~~~~~~~~---~~~~~~~   89 (337)
T 3ble_A           13 MTKVETRLEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSKGELETVQKIMEWAA---TEQLTER   89 (337)
T ss_dssp             ------CCEEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCTTHHHHHHHHHHHHH---HTTCGGG
T ss_pred             cccCCCceEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCChhHHHHHHHHHhhhh---hhccCCC
Confidence            345788999999999999999999999999999999 99999999999999985 5   23333322211   1113566


Q ss_pred             CceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHH
Q 012949          195 ARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVA  274 (452)
Q Consensus       195 ~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v  274 (452)
                      +++++|+|+.+                          ++++|+++|++.|++|+++||.|++.|+|+|++++++++.+++
T Consensus        90 ~~i~~l~~~~~--------------------------~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v  143 (337)
T 3ble_A           90 IEILGFVDGNK--------------------------TVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVI  143 (337)
T ss_dssp             EEEEEESSTTH--------------------------HHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             CeEEEEccchh--------------------------hHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHH
Confidence            78888888765                          8999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949          275 HAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL  354 (452)
Q Consensus       275 ~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~  354 (452)
                      ++||++|++|++++++   |++.++++++++.++++.+.++||++|+|+||+|+++|.+++++|+.+++++|.++|++|+
T Consensus       144 ~~ak~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~  220 (337)
T 3ble_A          144 EYAIKSGLKINVYLED---WSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHG  220 (337)
T ss_dssp             HHHHHTTCEEEEEEET---HHHHHHHCHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEEC
T ss_pred             HHHHHCCCEEEEEEEE---CCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEe
Confidence            9999999999977764   4557899999999999999999999999999999999999999999999999888999999


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC-CCCCCCChhhHHHHHHHHHHHhCCC
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL-GVETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~-Gi~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                      |||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+ |+++++|+++|.++++++++.+|++
T Consensus       221 Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~------~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~  294 (337)
T 3ble_A          221 HNDYDLSVANSLQAIRAGVKGLHASINGLGE------RAGNTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKR  294 (337)
T ss_dssp             BCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS------TTCBCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCC
T ss_pred             cCCcchHHHHHHHHHHhCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999      99999999999999986 9999999999999999999999999


Q ss_pred             CCCCcccccchhhhhccCC
Q 012949          434 SGSKTAIALNRIAADASKI  452 (452)
Q Consensus       434 ~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +|+++|++|.++|+|+|||
T Consensus       295 ~~~~~~~vg~~~f~h~~Gi  313 (337)
T 3ble_A          295 ISANRPIVGEDVFTQTAGV  313 (337)
T ss_dssp             CCTTCTTTSTTTTCC----
T ss_pred             CCCCccchhhhhhheeccc
Confidence            9999999999999999997

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=100.00  E-value=1.2e-62  Score=510.98  Aligned_cols=286  Identities=18%  Similarity=0.180  Sum_probs=241.4

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEe
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLT  201 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~  201 (452)
                      ++++|+|+|||||||+|.++..|++++|++|++.|+++||++||+|||.   +.|+.  .+ ..+.+.+ ....++.+++
T Consensus        36 ~~~~V~I~DtTLRDG~Q~~~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~P~---asp~d--~~-~~~~i~~~~~~~~v~~~~  109 (423)
T 3ivs_A           36 RVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPV---ASEQS--RQ-DCEAICKLGLKCKILTHI  109 (423)
T ss_dssp             CTTSCEEEECTTTGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTT---SCHHH--HH-HHHHHHTSCCSSEEEEEE
T ss_pred             CCCcEEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeecc---cCHHH--HH-HHHHHHhcCCCCEEEEee
Confidence            3567999999999999999999999999999999999999999999964   33543  22 2333333 2233333332


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      +.                         ..+++++|+++|++.|++|+++||.|++.++++|++++++.+.+++++||++|
T Consensus       110 r~-------------------------~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G  164 (423)
T 3ivs_A          110 RC-------------------------HMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKG  164 (423)
T ss_dssp             ES-------------------------CHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTT
T ss_pred             cc-------------------------ChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC
Confidence            11                         12489999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ++|++++      ++.++++++++.++++.+.++|+++|+|+||+|+++|.+++++|+.++++++ ++|++|+|||+|||
T Consensus       165 ~~V~~~~------eda~r~d~~~~~~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlA  237 (423)
T 3ivs_A          165 IEVRFSS------EDSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMA  237 (423)
T ss_dssp             CEEEEEE------ESGGGSCHHHHHHHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCH
T ss_pred             CEEEEEE------ccCcCCCHHHHHHHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchH
Confidence            9998544      4667899999999999999999999999999999999999999999999876 58999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc---CCCCCCCChhhHHHHHHHHHHHhCCCCCCCc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG---LGVETNVDLRKLMLAGDFINKHLGRPSGSKT  438 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~---~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~  438 (452)
                      +||+++|+++||++||+||+|+||      |+||++||+|+++|..   +++++++|+++|.++++++++++|+++|+++
T Consensus       238 vAN~laAv~aGa~~vd~ti~GlGE------RaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~k  311 (423)
T 3ivs_A          238 IANAYCALEAGATHIDTSILGIGE------RNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNN  311 (423)
T ss_dssp             HHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTC
T ss_pred             HHHHHHHHHhCCCEEEEecccccC------cccchhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999999      9999999999999864   3678999999999999999999999999999


Q ss_pred             ccccchhhhhccCC
Q 012949          439 AIALNRIAADASKI  452 (452)
Q Consensus       439 pi~G~~vf~h~Sgi  452 (452)
                      |++|+++|+|+|||
T Consensus       312 pivG~~aFah~sGi  325 (423)
T 3ivs_A          312 YITGMCAFTHKAGI  325 (423)
T ss_dssp             TTTSTTTTEEECSG
T ss_pred             CchhHhHHHhhcch
Confidence            99999999999997

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=100.00  E-value=8.2e-61  Score=493.34  Aligned_cols=282  Identities=21%  Similarity=0.237  Sum_probs=244.0

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecch
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNL  204 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~  204 (452)
                      +|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||.+   .|+..   +.++.+++. .+.++.++.+. 
T Consensus         3 ~v~I~DtTLRDG~Q~~~~~~~~~~k~~ia~~L~~~Gv~~IE~g~p~~---~~~~~---~~~~~i~~~~~~~~v~~~~r~-   75 (382)
T 2ztj_A            3 EWKIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVA---SPQSR---KDAEVLASLGLKAKVVTHIQC-   75 (382)
T ss_dssp             CCEEEEEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTS---CHHHH---HHHHHHHTSCCSSEEEEEEES-
T ss_pred             ceEEEECCCCcccCCCCCCcCHHHHHHHHHHHHHcCcCEEEEcCCcC---CHHHH---HHHHHHHhcCCCcEEEEEccc-
Confidence            59999999999999999999999999999999999999999999653   34432   234444432 33444444322 


Q ss_pred             hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--C
Q 012949          205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--I  282 (452)
Q Consensus       205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~  282 (452)
                                              ..+++++|+++|++.|++|.++||.|++ |+|+|++++++++.+++++||+.|  +
T Consensus        76 ------------------------~~~di~~a~~~g~~~v~i~~~~s~~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~  130 (382)
T 2ztj_A           76 ------------------------RLDAAKVAVETGVQGIDLLFGTSKYLRA-PHGRDIPRIIEEAKEVIAYIREAAPHV  130 (382)
T ss_dssp             ------------------------CHHHHHHHHHTTCSEEEEEECC---------CCCHHHHHHHHHHHHHHHHHHCTTS
T ss_pred             ------------------------ChhhHHHHHHcCCCEEEEEeccCHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCE
Confidence                                    2248999999999999999999999999 999999999999999999999999  7


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-CCccEEEEeCCCcCcH
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQS  361 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-p~~~l~vH~Hnd~GlA  361 (452)
                      +|+++      .++.++++++++.++++.+.++ |++|+|+||+|+++|.+++++|+.+++.+ |.++|++|+|||+|||
T Consensus       131 ~v~~~------~ed~~~~~~~~~~~~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlA  203 (382)
T 2ztj_A          131 EVRFS------AEDTFRSEEQDLLAVYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCA  203 (382)
T ss_dssp             EEEEE------ETTTTTSCHHHHHHHHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCH
T ss_pred             EEEEE------EEeCCCCCHHHHHHHHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHH
Confidence            77633      3467899999999999999999 99999999999999999999999999985 6779999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC---CCCCCCChhhHHHHHHHHHHHhCCCCCCCc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL---GVETNVDLRKLMLAGDFINKHLGRPSGSKT  438 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~---Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~  438 (452)
                      +||+++|+++||++||+|++||||      |+||++||+|+++|+.+   |+++++|+++|.++++++++++|+++|+++
T Consensus       204 vAN~laAv~aGa~~vd~tv~GlGe------raGN~~lE~vv~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~  277 (382)
T 2ztj_A          204 IANAYEAIEAGATHVDTTILGIGE------RNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNN  277 (382)
T ss_dssp             HHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTC
T ss_pred             HHHHHHHHHhCCCEEEEccccccc------cccchhHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCC
Confidence            999999999999999999999999      99999999999999753   578999999999999999999999999999


Q ss_pred             ccccchhhhhccCC
Q 012949          439 AIALNRIAADASKI  452 (452)
Q Consensus       439 pi~G~~vf~h~Sgi  452 (452)
                      |++|.++|+|+|||
T Consensus       278 p~vG~~~f~h~sGi  291 (382)
T 2ztj_A          278 YITGETAFSHKAGM  291 (382)
T ss_dssp             TTTSTTTTEECCHH
T ss_pred             CcCCcchhheeccc
Confidence            99999999999986

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=100.00  E-value=4.4e-60  Score=472.05  Aligned_cols=273  Identities=21%  Similarity=0.262  Sum_probs=235.2

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecch
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNL  204 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~  204 (452)
                      ++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||.+   .|  .|.+.+....+..+++++++|+|+.
T Consensus         4 ~~v~I~DttlRDG~Q~~~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~---~~--~d~e~v~~i~~~~~~~~i~~l~~~~   78 (293)
T 3ewb_X            4 KKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPIS---SP--GDFECVKAIAKAIKHCSVTGLARCV   78 (293)
T ss_dssp             EEEEEEECTTTCCC-----CCCHHHHHHHHHHHHHHTCSEEEEECGGG---CH--HHHHHHHHHHHHCCSSEEEEEEESS
T ss_pred             CeeEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---Cc--cHHHHHHHHHHhcCCCEEEEEecCC
Confidence            469999999999999999999999999999999999999999999753   23  2445544444556889999999876


Q ss_pred             hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHH----cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIA----AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~----~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      +                         ++++++++    +|+++|++|+++||.|++.|+|+|++++++.+.+++++||+.
T Consensus        79 ~-------------------------~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~  133 (293)
T 3ewb_X           79 E-------------------------GDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQK  133 (293)
T ss_dssp             H-------------------------HHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTT
T ss_pred             H-------------------------HHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhC
Confidence            4                         25666665    699999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC---ccEEEEeCCC
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV---EKLAVHLHDT  357 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~---~~l~vH~Hnd  357 (452)
                      |.+|+      |+++++++++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++|+   ++|++|+|||
T Consensus       134 g~~v~------~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd  207 (293)
T 3ewb_X          134 FDVVQ------FSPEDATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDD  207 (293)
T ss_dssp             CSCEE------EEEETGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCT
T ss_pred             CCEEE------EEeccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCC
Confidence            99988      34567789999999999999999999999999999999999999999999999985   5799999999


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc----CCCCCCCChhhHHHHHHHHHHHhCCC
Q 012949          358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG----LGVETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~----~Gi~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                      +|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.    +|++|++|+++|.++++++++.+|++
T Consensus       208 ~Gla~AN~laA~~aGa~~vd~sv~GlGe------raGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~  281 (293)
T 3ewb_X          208 LGMATANALAAIENGARRVEGTINGIGE------RAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMP  281 (293)
T ss_dssp             TSCHHHHHHHHHHTTCCEEEEBGGGCCT------TTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC----
T ss_pred             cChHHHHHHHHHHhCCCEEEeecccccc------ccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999      9999999999999985    69999999999999999999999999


Q ss_pred             CCCCcc
Q 012949          434 SGSKTA  439 (452)
Q Consensus       434 ~p~~~p  439 (452)
                      +|+++.
T Consensus       282 ~~~~~~  287 (293)
T 3ewb_X          282 VPRNEG  287 (293)
T ss_dssp             ------
T ss_pred             CCCCCC
Confidence            999864

>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A

Probab=100.00  E-value=5.8e-60  Score=509.07  Aligned_cols=298  Identities=16%  Similarity=0.118  Sum_probs=264.2

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeE
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPV  199 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~  199 (452)
                      +.+.++|+|+|||||+|+++..|++++|++|+++|+++||++||+|||.+.   |  .|.+.+.+.++..   .++++++
T Consensus        68 ~~~~p~i~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEaGfP~as---p--~D~e~v~~i~~~~l~~~~~~i~a  142 (644)
T 3hq1_A           68 IDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSAS---Q--TDFDFVREIIEQGAIPDDVTIQV  142 (644)
T ss_dssp             CCSCCEEEECCCCCCGGGCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTC---H--HHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             cCCCCEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---h--hHHHHHHHHHhcCCCCCCeEEEE
Confidence            667799999999999999999999999999999999999999999997532   2  3555555544442   4789999


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      |+++++.+++|                     .+++++.++.++|++|.++||.|++.|+|+|++++++.+.++++++++
T Consensus       143 L~r~~~~did~---------------------a~eal~~a~~~~Vhif~stSd~h~~~~l~~s~eevle~~~~~v~~a~~  201 (644)
T 3hq1_A          143 LTQCRPELIER---------------------TFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVE  201 (644)
T ss_dssp             EEESCHHHHHH---------------------HHHHHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCHhhHHH---------------------HHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            99987643322                     455556789999999999999999999999999999999999988887


Q ss_pred             CCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHC---CcC---EEEEcCCcCCCcHHHHHHHHHHHHHhCC---Ccc
Q 012949          280 LSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDM---GCF---EISLGDTIGVGTPGTVVPMLEAVMAVVP---VEK  349 (452)
Q Consensus       280 ~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~li~~l~~~~p---~~~  349 (452)
                      ++.. +.+.+.+.|++++.++++++|+.++++.+.++   |++   .|+|+||+|+++|..++++|+.+++++|   .++
T Consensus       202 ~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~  281 (644)
T 3hq1_A          202 QAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVI  281 (644)
T ss_dssp             HHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEE
T ss_pred             HhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCce
Confidence            6533 11123344778899999999999999999985   677   8999999999999999999999999997   468


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHH
Q 012949          350 LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH  429 (452)
Q Consensus       350 l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~  429 (452)
                      |++|+|||+|||+||+++|+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.+++++++++
T Consensus       282 l~vH~HND~GlAvANslaAv~AGA~~Vdgti~G~GE------RaGNa~LE~lv~~L~~~Gi~tgidl~~L~~is~~ve~~  355 (644)
T 3hq1_A          282 LSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYC  355 (644)
T ss_dssp             EEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHH
T ss_pred             EEEecCCCCCcHHHHHHHHHHhCCCEEEecCCCCCc------cccCccHHHHHHHHHhcccCCccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999      99999999999999999999999999999999999999


Q ss_pred             hCCCCCCCcccccchhhhhccCC
Q 012949          430 LGRPSGSKTAIALNRIAADASKI  452 (452)
Q Consensus       430 ~g~~~p~~~pi~G~~vf~h~Sgi  452 (452)
                      +|+++|+++|++|+++|+|+|||
T Consensus       356 ~g~~v~~~kpiVG~~aFah~SGi  378 (644)
T 3hq1_A          356 NQLPVHERHPYGGDLVYTAFSGS  378 (644)
T ss_dssp             HSCCCCTTCTTTSTTTTEECCHH
T ss_pred             hCCCCCCCcccccccceeecccc
Confidence            99999999999999999999997

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=100.00  E-value=5.8e-54  Score=457.13  Aligned_cols=289  Identities=19%  Similarity=0.242  Sum_probs=261.4

Q ss_pred             CCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCCC---C-CcccccCCHHHHHHHHHh-ccCCce
Q 012949          124 PRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVS---P-KWVPQLADARDVMEAVRD-LEGARL  197 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s---~-~~~p~~~D~e~v~~~i~~-~~~~~l  197 (452)
                      |++|+|+|||||||.|+++. .|++++|++|++.|+++||++||+|++++   + +|+  ..|.++.++.+++ ++++++
T Consensus        22 ~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl--~~d~~e~lr~l~~~~~~~~l   99 (539)
T 1rqb_A           22 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFL--NEDPWERLRTFRKLMPNSRL   99 (539)
T ss_dssp             SEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTS--CCCHHHHHHHHHHHCTTSCE
T ss_pred             CCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhcc--CCCHHHHHHHHHHhCCCCEE
Confidence            35799999999999999964 79999999999999999999999998643   1 222  2477788888875 688999


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++|+++.+     +.+|..+++++++       +++++++++|++.|+||.++||+              +++.+++++|
T Consensus       100 ~~L~R~~N-----~~G~~~ypddv~~-------~~ve~a~~aGvd~vrIf~s~sd~--------------~ni~~~i~~a  153 (539)
T 1rqb_A          100 QMLLRGQN-----LLGYRHYNDEVVD-------RFVDKSAENGMDVFRVFDAMNDP--------------RNMAHAMAAV  153 (539)
T ss_dssp             EEEECGGG-----TTSSSCCCHHHHH-------HHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHHHH
T ss_pred             EEEecccc-----ccCcccCcccccH-------HHHHHHHhCCCCEEEEEEehhHH--------------HHHHHHHHHH
Confidence            99996544     5678887776655       48999999999999999999995              5678999999


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCC
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHD  356 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hn  356 (452)
                      |+.|.+|++++++++    ..+++++++.++++++.++||++|+|+||+|+++|.+++++|+.+++++| .++|++|+||
T Consensus       154 k~~G~~v~~~i~~~~----~~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hn  229 (539)
T 1rqb_A          154 KKAGKHAQGTICYTI----SPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHS  229 (539)
T ss_dssp             HHTTCEEEEEEECCC----STTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBC
T ss_pred             HHCCCeEEEEEEeee----CCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence            999999999998765    45779999999999999999999999999999999999999999999997 7899999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGS  436 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~  436 (452)
                      |+|||+||+++|+++||++||+|++|+|+      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+.+.|.
T Consensus       230 d~GlAvAN~laAveAGa~~VD~ti~g~Ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~  303 (539)
T 1rqb_A          230 TTGVTEVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKF  303 (539)
T ss_dssp             TTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGG
T ss_pred             CCChHHHHHHHHHHhCCCEEEEeccccCC------CccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHhCCCcCC
Confidence            99999999999999999999999999999      999999999999999999999999999999999999999999999


Q ss_pred             Cccc-ccchhhhhcc
Q 012949          437 KTAI-ALNRIAADAS  450 (452)
Q Consensus       437 ~~pi-~G~~vf~h~S  450 (452)
                      +.|+ +|.++|.|++
T Consensus       304 ~~~~~~~~~v~~he~  318 (539)
T 1rqb_A          304 ESKTLVDTSIFKSQI  318 (539)
T ss_dssp             CCSCSCCCTHHHHCC
T ss_pred             CCCccCCCceEEecC
Confidence            9999 9999999984

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=100.00  E-value=1.2e-52  Score=441.15  Aligned_cols=290  Identities=18%  Similarity=0.237  Sum_probs=255.4

Q ss_pred             CCCCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCCEEEEecCCC---C-CcccccCCHHHHHHHHHh-ccCC
Q 012949          122 GIPRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLPVVEATSFVS---P-KWVPQLADARDVMEAVRD-LEGA  195 (452)
Q Consensus       122 ~~p~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s---~-~~~p~~~D~e~v~~~i~~-~~~~  195 (452)
                      .-+++|+|+|||||||.|+++. .|++++|++|++.|+++||+.||+|++++   + +|+  ..|.++.++.+++ ++++
T Consensus         3 ~~~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~--~~d~~e~l~~i~~~~~~~   80 (464)
T 2nx9_A            3 QAIKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFL--GEDPWQRLRLLKQAMPNT   80 (464)
T ss_dssp             -CCCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTT--CCCHHHHHHHHHHHCSSS
T ss_pred             CCCCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhcc--CCCHHHHHHHHHHhCCCC
Confidence            3467899999999999999865 79999999999999999999999998543   1 222  2477778888775 6889


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      ++++|++..+     +.+|..+++++++       +++++++++|++.|+||.++||+              +++.++++
T Consensus        81 ~l~~l~R~~N-----~~G~~~~~ddv~~-------~~v~~a~~~Gvd~i~if~~~sd~--------------~ni~~~i~  134 (464)
T 2nx9_A           81 PLQMLLRGQN-----LLGYRHYADDVVD-------TFVERAVKNGMDVFRVFDAMNDV--------------RNMQQALQ  134 (464)
T ss_dssp             CEEEEECGGG-----TTSSSCCCHHHHH-------HHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHH
T ss_pred             eEEEEecccc-----ccCcccccchhhH-------HHHHHHHhCCcCEEEEEEecCHH--------------HHHHHHHH
Confidence            9999986544     5678777777665       48999999999999999999996              56678999


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH  355 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H  355 (452)
                      +||+.|.+|+++++++++    .+++++++.++++++.++||++|+|+||+|+++|.+++++|+.++++++ ++|++|+|
T Consensus       135 ~ak~~G~~v~~~i~~~~~----~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~~-~~i~~H~H  209 (464)
T 2nx9_A          135 AVKKMGAHAQGTLCYTTS----PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-VELHLHCH  209 (464)
T ss_dssp             HHHHTTCEEEEEEECCCC----TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHCC-SCEEEEEC
T ss_pred             HHHHCCCEEEEEEEeeeC----CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence            999999999999987654    4678999999999999999999999999999999999999999999994 68999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ||+|||+||+++|+++||++||+|++|+|+      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+...|
T Consensus       210 nd~GlAvAN~laAv~AGa~~VD~ti~g~ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~  283 (464)
T 2nx9_A          210 STAGLADMTLLKAIEAGVDRVDTAISSMSG------TYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHA  283 (464)
T ss_dssp             CTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCChHHHHHHHHHHhCCCEEEEeccccCC------CCcCHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHhhccc
Confidence            999999999999999999999999999999      99999999999999999999999999999999999999998777


Q ss_pred             CCcccccchhhhhcc
Q 012949          436 SKTAIALNRIAADAS  450 (452)
Q Consensus       436 ~~~pi~G~~vf~h~S  450 (452)
                      ...+.+|.+...+.+
T Consensus       284 ~~~~~~g~~~~v~~~  298 (464)
T 2nx9_A          284 FEGMMKGSDARILVA  298 (464)
T ss_dssp             GCCSCCSCCTHHHHH
T ss_pred             ccCCCcCCcCCeEEe
Confidence            776777765544443

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=100.00  E-value=6.4e-52  Score=421.70  Aligned_cols=276  Identities=22%  Similarity=0.290  Sum_probs=242.7

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEe----cC-CCCCcccccCCHHHHHHHHHh-ccCCc
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEAT----SF-VSPKWVPQLADARDVMEAVRD-LEGAR  196 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG----~~-~s~~~~p~~~D~e~v~~~i~~-~~~~~  196 (452)
                      .+++|+|+|||||||+|+++..|++++|++|++.|+++|++.||+|    +| ++|++.|++.+.++.++.+++ .++++
T Consensus         5 ~~~~v~i~DttlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~   84 (345)
T 1nvm_A            5 PSKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQ   84 (345)
T ss_dssp             CCCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSE
T ss_pred             CCCCcEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCE
Confidence            3457999999999999999999999999999999999999999998    76 478888988888888877754 57889


Q ss_pred             eeEE-ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          197 LPVL-TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       197 l~~l-~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      +++| .|+..                       ..+++++|.++|++.|+|+++.|+.              +.+.++++
T Consensus        85 i~~l~~p~~~-----------------------~~~~i~~a~~aGvd~v~I~~~~s~~--------------~~~~~~i~  127 (345)
T 1nvm_A           85 IATLLLPGIG-----------------------SVHDLKNAYQAGARVVRVATHCTEA--------------DVSKQHIE  127 (345)
T ss_dssp             EEEEECBTTB-----------------------CHHHHHHHHHHTCCEEEEEEETTCG--------------GGGHHHHH
T ss_pred             EEEEecCCcc-----------------------cHHHHHHHHhCCcCEEEEEEeccHH--------------HHHHHHHH
Confidence            9888 56432                       2358999999999999999999874              44578889


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEe
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHL  354 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~  354 (452)
                      +||++|+.+.++++      +.++++++++.++++.+.++|++.|+|+||+|.++|.+++++|+.+++++| .++|++|+
T Consensus       128 ~ak~~G~~v~~~~~------~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~  201 (345)
T 1nvm_A          128 YARNLGMDTVGFLM------MSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHA  201 (345)
T ss_dssp             HHHHHTCEEEEEEE------STTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEEC
T ss_pred             HHHHCCCEEEEEEE------eCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEE
Confidence            99999999997776      346889999999999999999999999999999999999999999999996 78999999


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHH-hCCC
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKH-LGRP  433 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~-~g~~  433 (452)
                      |||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.++++++++. .+.+
T Consensus       202 Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~------~aGN~~le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~~~~~  275 (345)
T 1nvm_A          202 HHNLSLGVANSIVAVEEGCDRVDASLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP  275 (345)
T ss_dssp             BCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSC
T ss_pred             CCCccHHHHHHHHHHHcCCCEEEecchhccC------CccCcCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999      99999999999999999999999999999999999886 3443


Q ss_pred             CCCCcccccchhhhhccC
Q 012949          434 SGSKTAIALNRIAADASK  451 (452)
Q Consensus       434 ~p~~~pi~G~~vf~h~Sg  451 (452)
                          +|+.+...+..-+|
T Consensus       276 ----~~~~~~~~~~~~~G  289 (345)
T 1nvm_A          276 ----VRVDRETLGLGYAG  289 (345)
T ss_dssp             ----CSCCHHHHHHHHHT
T ss_pred             ----CCCChHHHheeccc
Confidence                34555554443333

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=100.00  E-value=2.6e-51  Score=413.01  Aligned_cols=272  Identities=18%  Similarity=0.137  Sum_probs=231.3

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc----cccCCHHHHHHHHHhccCCceeEEe
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV----PQLADARDVMEAVRDLEGARLPVLT  201 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~----p~~~D~e~v~~~i~~~~~~~l~~l~  201 (452)
                      +|+|+|||||||.|++++.|++++|++|++.|+++||++||+|||++|++.    |++.+ ++.++.+++.+++++++|+
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~-~e~l~~i~~~~~~~~~~L~   80 (320)
T 3dxi_A            2 SLKILDCTLRDGGYYTNWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTP-VSVLKHLRNISTKKIAIML   80 (320)
T ss_dssp             -CEEEECHHHHHGGGGTTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCC-HHHHHHHHHHCCSEEEEEE
T ss_pred             eEEEEECCcCccccCCCCcCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccCh-HHHHHHHhhccCCeEEEEe
Confidence            589999999999999999999999999999999999999999999999875    77765 5677777778899999999


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      |+.+          .++++         .+.+..+.++|++.|+++....+              ++.+.+++++||++|
T Consensus        81 r~~~----------~~~~d---------v~~~~~a~~~Gvd~~ri~~~~~n--------------le~~~~~v~~ak~~G  127 (320)
T 3dxi_A           81 NEKN----------TTPED---------LNHLLLPIIGLVDMIRIAIDPQN--------------IDRAIVLAKAIKTMG  127 (320)
T ss_dssp             EGGG----------CCGGG---------HHHHHGGGTTTCSEEEEEECGGG--------------HHHHHHHHHHHHTTT
T ss_pred             cCCC----------CChhh---------HHHHHHhhhcCCCEEEEEecHHH--------------HHHHHHHHHHHHHCC
Confidence            8754          11211         12334446689999999985432              677788999999999


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ++|+++++++  +|..   +++++...+.+ .++|++.|+|+||+|+++|.+++++|+.+++++| ++|++|+|||+|||
T Consensus       128 ~~v~~~~~~~--~~~~---~~~~~l~~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a  200 (320)
T 3dxi_A          128 FEVGFNVMYM--SKWA---EMNGFLSKLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLG  200 (320)
T ss_dssp             CEEEEEECCT--TTGG---GSTTSGGGGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCH
T ss_pred             CEEEEEEEeC--CCCC---CHHHHHHHHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccH
Confidence            9999888863  3332   23333334444 4789999999999999999999999999999997 58999999999999


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCCCCcccc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA  441 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p~~~pi~  441 (452)
                      +||+++|+++||++||+|++|||+      ++||++||+|+++|+. ++++++|+++|.++.++++++.      +++++
T Consensus       201 ~an~laA~~aGa~~vd~si~GlG~------~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~------~~~~~  267 (320)
T 3dxi_A          201 LINSITAIDDGIDFIDATITGMGR------GAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLL------EKYQW  267 (320)
T ss_dssp             HHHHHHHHHTTCSEEEEBGGGCSS------TTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHH------HHHCC
T ss_pred             HHHHHHHHHhCCCEEEEeccccCC------cccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHH------HhcCC
Confidence            999999999999999999999999      9999999999999998 5667999999999999999986      78899


Q ss_pred             cchhhhhccC
Q 012949          442 LNRIAADASK  451 (452)
Q Consensus       442 G~~vf~h~Sg  451 (452)
                      |.++|.|+||
T Consensus       268 g~~~~~~~sg  277 (320)
T 3dxi_A          268 GTNLPYMLSG  277 (320)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCchhhHHHh
Confidence            9999988876

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=100.00  E-value=6.8e-50  Score=438.54  Aligned_cols=309  Identities=17%  Similarity=0.156  Sum_probs=261.9

Q ss_pred             chhhHHHHHhh--------hcCCCCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHCC--CCEEEEecCCCCC-cc
Q 012949          109 DKDIRDITNKF--------LKGIPRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSSG--LPVVEATSFVSPK-WV  176 (452)
Q Consensus       109 ~~~~~~~~~~~--------~~~~p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~G--v~~IEvG~~~s~~-~~  176 (452)
                      +...|++..+.        +. -+++|+|+|||||||.|+++.. |++++|++|++.|+++|  ++.||+|..++-. .+
T Consensus        78 ~~g~r~~l~~~gp~~~~~~~~-~~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~  156 (718)
T 3bg3_A           78 PAGFRDILLREGPEGFARAVR-NHPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAM  156 (718)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHH-HCCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHH
T ss_pred             CCCHHHHHHHhCHHHHHHHHh-ccCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhcc
Confidence            45666665521        22 2457999999999999999865 99999999999999985  6669998111100 00


Q ss_pred             ccc-CCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHH
Q 012949          177 PQL-ADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAF  254 (452)
Q Consensus       177 p~~-~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~  254 (452)
                      |.+ .++++.++.++ .++++++++|++..+     +++|.+++.++++       +++++|+++|++.|+||.+.|+  
T Consensus       157 ~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n-----~vgy~~~p~~~~~-------~~i~~a~~~Gvd~irIf~s~n~--  222 (718)
T 3bg3_A          157 RFLYECPWRRLQELRELIPNIPFQMLLRGAN-----AVGYTNYPDNVVF-------KFCEVAKENGMDVFRVFDSLNY--  222 (718)
T ss_dssp             HTSCCCHHHHHHHHHHHCSSSCEEEEECGGG-----TTSSSCCCHHHHH-------HHHHHHHHHTCCEEEEECSSCC--
T ss_pred             ccCCCCHHHHHHHHHHHcccchHHHHhcccc-----cccccccCCcchH-------HHHHHHHhcCcCEEEEEecHHH--
Confidence            001 24555555554 568889998887654     6788888877654       4999999999999999999876  


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHH
Q 012949          255 SKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPG  332 (452)
Q Consensus       255 ~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~  332 (452)
                                  +++++..++++++.|..|+++++++  |.+|..+.++++++.++++++.++||++|+|+||+|+++|.
T Consensus       223 ------------l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~  290 (718)
T 3bg3_A          223 ------------LPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPT  290 (718)
T ss_dssp             ------------HHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHH
T ss_pred             ------------HHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHH
Confidence                        3677889999999999999999986  34555455699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          333 TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       333 ~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      +++++|+.+++++|+++|++|+|||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++
T Consensus       291 ~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGe------rtGN~~lE~vv~~L~~~g~~t  364 (718)
T 3bg3_A          291 ACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSG------MTSQPSMGALVACTRGTPLDT  364 (718)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCC
T ss_pred             HHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCccccc------ccCchhHHHHHHHHHhcCCCc
Confidence            99999999999998889999999999999999999999999999999999999      999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHhCCCCCCC--cccccc--hhhhhcc
Q 012949          413 NVDLRKLMLAGDFINKHLGRPSGSK--TAIALN--RIAADAS  450 (452)
Q Consensus       413 ~iDl~~L~~la~~v~~~~g~~~p~~--~pi~G~--~vf~h~S  450 (452)
                      ++|+++|.+++++++++.+.+.|.+  .+++|.  ++|.|+.
T Consensus       365 gidl~~L~~~s~~v~~~~~~~~~~~~~~~~~g~~~~v~~~e~  406 (718)
T 3bg3_A          365 EVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNSDVYENEI  406 (718)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTGGGCGGGTCCSCCTTHHHHCC
T ss_pred             ccCHHHHHHHHHHHHHHhCCCcCCcCCccccccccceeeccC
Confidence            9999999999999999999999988  899987  6777764

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=100.00  E-value=1.4e-46  Score=432.43  Aligned_cols=291  Identities=15%  Similarity=0.157  Sum_probs=250.6

Q ss_pred             CCccEEEeCCccccCCCCCC-CCCHHHHHHHHHHHHHCCCC--EEEE----ecCCCCCcccccCCHHHHHHHHH-hccCC
Q 012949          124 PRFVKIVEVGPRDGLQNEKN-TVPTGVKVELIRRLVSSGLP--VVEA----TSFVSPKWVPQLADARDVMEAVR-DLEGA  195 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~-~~~~~~k~~i~~~L~~~Gv~--~IEv----G~~~s~~~~p~~~D~e~v~~~i~-~~~~~  195 (452)
                      +++|+|+|||||||.|+++. .|++++|++|++.|+++|++  .||+    ||++...+.  -.++++.++.++ .++++
T Consensus       548 ~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~--~~~p~e~l~~~~~~~~~~  625 (1165)
T 2qf7_A          548 EKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFL--TEDPWERLALIREGAPNL  625 (1165)
T ss_dssp             CSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHH--CCCHHHHHHHHHHHCTTS
T ss_pred             CCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhc--CCCHHHHHHHHHHHchhh
Confidence            35799999999999999986 59999999999999999655  5998    343211100  135556566554 56888


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      ++++|+++.+     +++|.+++.++++       +++++|+++|++.|+||.+.|+              ++++..+++
T Consensus       626 ~~~~l~R~~n-----~vg~~~~~~~~~~-------~~i~~a~~~g~d~irif~sl~~--------------~~~~~~~i~  679 (1165)
T 2qf7_A          626 LLQMLLRGAN-----GVGYTNYPDNVVK-------YFVRQAAKGGIDLFRVFDCLNW--------------VENMRVSMD  679 (1165)
T ss_dssp             EEEEEEETTT-----BTCSSCCCHHHHH-------HHHHHHHHHTCCEEEEECTTCC--------------GGGGHHHHH
T ss_pred             HHHHHhcccc-----ccccccCCchhHH-------HHHHHHHhcCcCEEEEEeeHHH--------------HHHHHHHHH
Confidence            9999987655     7789888877655       4999999999999999999876              356778899


Q ss_pred             HHHhCCCcEEEEEEee--ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          276 AAKVLSIPVRGYVSCV--VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~--~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      ++|+.|..|+++++++  |.+|..+.++++++.++++++.++||++|+|+||+|+++|.+++++|+.+++++ +++|++|
T Consensus       680 ~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H  758 (1165)
T 2qf7_A          680 AIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFH  758 (1165)
T ss_dssp             HHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEE
T ss_pred             HHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEE
Confidence            9999999999999986  334443448999999999999999999999999999999999999999999999 5689999


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC
Q 012949          354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                      +|||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+..
T Consensus       759 ~Hnd~GlAvAn~laAv~aGa~~vd~ti~GlGe------~~Gn~~le~vv~~L~~~g~~tgidl~~L~~~s~~~~~~~~~~  832 (1165)
T 2qf7_A          759 THDTSGIAAATVLAAVEAGVDAVDAAMDALSG------NTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQY  832 (1165)
T ss_dssp             ECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHGGG
T ss_pred             ECCCCCHHHHHHHHHHHhCCCEEEecccccCC------CccchhHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999999      999999999999999999999999999999999999999988


Q ss_pred             CCCCcccccc--hhhhhc
Q 012949          434 SGSKTAIALN--RIAADA  449 (452)
Q Consensus       434 ~p~~~pi~G~--~vf~h~  449 (452)
                      .|...+++|.  +++.|+
T Consensus       833 ~~~~~~~~~~~~~v~~~~  850 (1165)
T 2qf7_A          833 AAFESDLKGPASEVYLHE  850 (1165)
T ss_dssp             GGGCCCCCSCCTTHHHHC
T ss_pred             cCCCCCccCCccceEecc
Confidence            8877788884  456665

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=100.00  E-value=1.7e-45  Score=422.79  Aligned_cols=293  Identities=16%  Similarity=0.173  Sum_probs=257.0

Q ss_pred             CCccEEEeCCccccCCCCCCC-CCHHHHHHHHHHHHHC--CCCEEEEec-CCCCCccccc-CCHHHHHHHHHh-ccCCce
Q 012949          124 PRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSS--GLPVVEATS-FVSPKWVPQL-ADARDVMEAVRD-LEGARL  197 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~-~~~~~k~~i~~~L~~~--Gv~~IEvG~-~~s~~~~p~~-~D~e~v~~~i~~-~~~~~l  197 (452)
                      +++|+|+|||||||.|++++. |++++|++|++.|+++  |+..||.+. ..-.-.+|.+ .|+++.++.+++ ++++++
T Consensus       530 ~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~  609 (1150)
T 3hbl_A          530 QDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLF  609 (1150)
T ss_dssp             CSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEE
T ss_pred             CCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeE
Confidence            457999999999999999986 9999999999999999  999999942 1100023444 477777777764 688999


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++|+++.+     .++|..+++++++.       ++++|+++|++.|++|+++||+|+.              ..+++.+
T Consensus       610 ~~l~R~~n-----~vgy~~~pd~v~~~-------~v~~a~~~Gvd~irif~~~sd~~~~--------------~~~~~~~  663 (1150)
T 3hbl_A          610 QMLLRASN-----AVGYKNYPDNVIHK-------FVQESAKAGIDVFRIFDSLNWVDQM--------------KVANEAV  663 (1150)
T ss_dssp             EEEEETTT-----BTCSSCCCHHHHHH-------HHHHHHHTTCCEEEEECTTCCGGGG--------------HHHHHHH
T ss_pred             EEEecccc-----ccccccCCchhHHH-------HHHHHHhCCcCEEEEEeeCCHHHHH--------------HHHHHHH
Confidence            99997765     77899999988764       8999999999999999999998654              4566788


Q ss_pred             HhCCCcEEEEEEee---ecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949          278 KVLSIPVRGYVSCV---VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL  354 (452)
Q Consensus       278 k~~G~~V~~~l~~~---~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~  354 (452)
                      ++.|..+.+.++++   ++.++.++++++++.++++++.++||++|+|+||+|+++|.+++++|+.+++++ +++|++|+
T Consensus       664 ~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~  742 (1150)
T 3hbl_A          664 QEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHT  742 (1150)
T ss_dssp             HHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCEEEEE
T ss_pred             HHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeEEEEe
Confidence            88999999999998   766667889999999999999999999999999999999999999999999997 56899999


Q ss_pred             CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949          355 HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS  434 (452)
Q Consensus       355 Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~  434 (452)
                      |||+|||+||+++|+++||++||+|++||||      |+||++||+|+++|+.+|+++++|+++|.+++++++++.+...
T Consensus       743 Hnt~G~a~An~laA~~aGa~~vD~ai~GlG~------~~gn~~lE~lv~~L~~~g~~tgidl~~l~~~~~~~~~~~~~y~  816 (1150)
T 3hbl_A          743 HDTSGNGLLTYKQAIDAGVDIIDTAVASMSG------LTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYS  816 (1150)
T ss_dssp             CBTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGG
T ss_pred             CCCCcHHHHHHHHHHHhCCCEEEEeccccCC------CCCCccHHHHHHHHHhcCCCcCccHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999      9999999999999999999999999999999999999988766


Q ss_pred             CCCcccccc--hhhhhc
Q 012949          435 GSKTAIALN--RIAADA  449 (452)
Q Consensus       435 p~~~pi~G~--~vf~h~  449 (452)
                      +...++.|.  +++.|+
T Consensus       817 ~~~~~~~~~~~~v~~~~  833 (1150)
T 3hbl_A          817 DFESDIKSPNTEIYQHE  833 (1150)
T ss_dssp             GGCCSCCSCCTTHHHHC
T ss_pred             cccCCCCCCccceEEee
Confidence            666666654  467664

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.65  E-value=5.7e-07  Score=87.61  Aligned_cols=185  Identities=12%  Similarity=0.107  Sum_probs=111.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-ccccC-----------CHHHHHHHHHhc---c-CCceeEEecchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQLA-----------DARDVMEAVRDL---E-GARLPVLTPNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~~-----------D~e~v~~~i~~~---~-~~~l~~l~~~~~~  206 (452)
                      ..+.+..+++++.|.+.|+|.||+|.|.+ |.. .|...           ..+.+++.++++   . ++.+..+..    
T Consensus        27 ~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y----  102 (262)
T 2ekc_A           27 YPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTY----  102 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECC----
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEec----
Confidence            46779999999999999999999998753 310 01100           112222333322   1 333322211    


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |.+..       +....+.++.+.++|++.+.+..-            .    ++.+.+.++.++++|+.+..
T Consensus       103 -------~n~v~-------~~g~~~f~~~~~~aG~dgvii~dl------------~----~ee~~~~~~~~~~~gl~~i~  152 (262)
T 2ekc_A          103 -------YNPIF-------RIGLEKFCRLSREKGIDGFIVPDL------------P----PEEAEELKAVMKKYVLSFVP  152 (262)
T ss_dssp             -------HHHHH-------HHCHHHHHHHHHHTTCCEEECTTC------------C----HHHHHHHHHHHHHTTCEECC
T ss_pred             -------CcHHH-------HhhHHHHHHHHHHcCCCEEEECCC------------C----HHHHHHHHHHHHHcCCcEEE
Confidence                   11000       001134788999999998776421            1    24456778999999987531


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHH---HHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT---VVPMLEAVMAVVPVEKLAVHLHDTYGQSLP  363 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~---v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A  363 (452)
                       +.    .|   .++.+.+.++++..... +..+.+.+++|..+|..   +.++++.+++.. +.+|.+    .+|...+
T Consensus       153 -l~----~p---~t~~~rl~~ia~~a~gf-iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~v----G~GI~t~  218 (262)
T 2ekc_A          153 -LG----AP---TSTRKRIKLICEAADEM-TYFVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVV----GFGVSKK  218 (262)
T ss_dssp             -EE----CT---TCCHHHHHHHHHHCSSC-EEEESSCC---------CHHHHHHHHHHHHHC-CSCEEE----ESSCCSH
T ss_pred             -Ee----CC---CCCHHHHHHHHHhCCCC-EEEEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEE----eCCCCCH
Confidence             11    22   24567777777765432 45667779999998855   889999999976 457777    8999989


Q ss_pred             HHHHHHHcCCCEE
Q 012949          364 NILISLQMGISTV  376 (452)
Q Consensus       364 NaLaAl~aGa~~V  376 (452)
                      +.++++.+|||.|
T Consensus       219 e~~~~~~~gADgv  231 (262)
T 2ekc_A          219 EHAREIGSFADGV  231 (262)
T ss_dssp             HHHHHHHTTSSEE
T ss_pred             HHHHHHHcCCCEE
Confidence            9999999998754

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=98.59  E-value=2.4e-06  Score=85.77  Aligned_cols=229  Identities=14%  Similarity=0.138  Sum_probs=149.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .++.++.++.++.+.+.|++.|-++....|.+.+...+..++++.+++..+..+. +.++..                  
T Consensus        90 ~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~-~s~g~~------------------  150 (350)
T 3t7v_A           90 RLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIM-ISPGLM------------------  150 (350)
T ss_dssp             BCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEE-EECSSC------------------
T ss_pred             eCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEE-EeCCCC------------------
Confidence            4799999999999999999998886544342211111223444444432233332 223211                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                           ..+.++..+++|++.+.+..-.. + .+.+..-+.+.+    ...++++.+++.|+++...++  +|. .   -+
T Consensus       151 -----~~e~l~~L~~aG~~~i~i~lEt~~~~~~~~i~~~~~~~----~~l~~i~~a~~~Gi~v~~~~i--~Gl-g---et  215 (350)
T 3t7v_A          151 -----DNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFD----GRVNARRFAKQQGYCVEDGIL--TGV-G---ND  215 (350)
T ss_dssp             -----CHHHHHHHHHTTEEEEECCCBCSCHHHHHHHSTTCCHH----HHHHHHHHHHHHTCEEEEEEE--ESS-S---CC
T ss_pred             -----CHHHHHHHHHcCCCEEEEeeecCCHHHHHHhCCCCCHH----HHHHHHHHHHHcCCeEccceE--eec-C---CC
Confidence                 23578899999999888765443 3 332222344544    444667899999999887666  443 1   25


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE------cCCc----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          302 PSKVAYVAKELHDMGCFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L------~DT~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      ++.+.+.++.+.+.+++.+.+      ++|-    ...++.++.++++..|-.+|...|-.-.+   -++......|+.+
T Consensus       216 ~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~~---~~g~~~~~~~l~~  292 (350)
T 3t7v_A          216 IESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASLD---LEGIDGMVLRLNA  292 (350)
T ss_dssp             HHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEHH---HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCcccccc---ccChhHHHHHHhc
Confidence            788889999999999987765      2331    22456778888888888888754443222   3344678899999


Q ss_pred             CCCEEeecccCCCCCCCCCCCC--------CcccHHHHHHHHHcCCCCC
Q 012949          372 GISTVDCSVAGLGGCPYAKGAS--------GNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       372 Ga~~VD~Sv~GlGecP~a~gra--------GNaalE~vv~~L~~~Gi~t  412 (452)
                      ||+.+.+++..--   .+.|..        ++.+.++++..++..|+.+
T Consensus       293 Gan~~~~~~~~~~---~~ag~~~~~~~~~~~~~~~~~~~~~i~~~G~~~  338 (350)
T 3t7v_A          293 GANIVTSILPPDS---QLEGVANYDRDLEERDRDIKSVVRRLEIMGMKP  338 (350)
T ss_dssp             TCCEEEEECCSSC---CCCCSSCTTTTCSSCCCCHHHHHHHHHHHTCEE
T ss_pred             CCceecCCCCCCC---CCCCCCCCcccchhccCCHHHHHHHHHHcCCcc
Confidence            9999999988651   222211        3578999999999888754

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.23  E-value=1.2e-05  Score=78.76  Aligned_cols=184  Identities=16%  Similarity=0.170  Sum_probs=112.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhc----cCCceeEEe-cchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDL----EGARLPVLT-PNLK  205 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~----~~~~l~~l~-~~~~  205 (452)
                      ..+.+.-+++++.|.+.|+|.||+|.|-| |. --|...           ..+++++.++++    .++.+..|+ -|. 
T Consensus        30 dP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~-  108 (271)
T 3nav_A           30 DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANL-  108 (271)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHH-
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcH-
Confidence            35788899999999999999999998743 31 011111           112444555433    233333232 110 


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                        +     |           +....+.++.+.++|++.+.+.+-.            .    +...+..++++++|+.+.
T Consensus       109 --v-----~-----------~~g~~~f~~~~~~aGvdGvIipDlp------------~----ee~~~~~~~~~~~gl~~I  154 (271)
T 3nav_A          109 --V-----Y-----------ARGIDDFYQRCQKAGVDSVLIADVP------------T----NESQPFVAAAEKFGIQPI  154 (271)
T ss_dssp             --H-----H-----------HTCHHHHHHHHHHHTCCEEEETTSC------------G----GGCHHHHHHHHHTTCEEE
T ss_pred             --H-----H-----------HHhHHHHHHHHHHCCCCEEEECCCC------------H----HHHHHHHHHHHHcCCeEE
Confidence              0     0           0112347899999999998885321            1    224577899999999853


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHH
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLP  363 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~A  363 (452)
                      . ++       +..++.+.+.++++..... +..+.+.+++|...  |..+.++++.+|+... .|+.+    .+|....
T Consensus       155 ~-lv-------ap~t~~eri~~i~~~~~gf-iY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v----GfGIst~  220 (271)
T 3nav_A          155 F-IA-------PPTASDETLRAVAQLGKGY-TYLLSRAGVTGAETKANMPVHALLERLQQFDA-PPALL----GFGISEP  220 (271)
T ss_dssp             E-EE-------CTTCCHHHHHHHHHHCCSC-EEECCCC--------CCHHHHHHHHHHHHTTC-CCEEE----CSSCCSH
T ss_pred             E-EE-------CCCCCHHHHHHHHHHCCCe-EEEEeccCCCCcccCCchhHHHHHHHHHHhcC-CCEEE----ECCCCCH
Confidence            1 22       1224567777666653322 44555678888764  7789999999998764 46777    7888777


Q ss_pred             HHHH-HHHcCCCEE
Q 012949          364 NILI-SLQMGISTV  376 (452)
Q Consensus       364 NaLa-Al~aGa~~V  376 (452)
                      .... ++.+|||.|
T Consensus       221 e~~~~~~~~gADgv  234 (271)
T 3nav_A          221 AQVKQAIEAGAAGA  234 (271)
T ss_dssp             HHHHHHHHTTCSEE
T ss_pred             HHHHHHHHcCCCEE
Confidence            7777 999999855

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.14  E-value=1.7e-05  Score=77.63  Aligned_cols=185  Identities=15%  Similarity=0.161  Sum_probs=110.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhc----cCCceeEEecchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDL----EGARLPVLTPNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~----~~~~l~~l~~~~~~  206 (452)
                      ..+.+.-.++++.|.+.|+|.||+|.|-| |- -.|...           +.+.+++.++++    .++.+..|+-    
T Consensus        28 dP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y----  103 (267)
T 3vnd_A           28 DPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLY----  103 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEEC----
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEec----
Confidence            46788899999999999999999997643 31 001111           112334444432    2333222221    


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |.+    +   ++....+.++.++++|++.+.+.+-.                ++...+.+++++++|+++..
T Consensus       104 -------~np----v---~~~g~e~f~~~~~~aGvdgvii~Dlp----------------~ee~~~~~~~~~~~gl~~i~  153 (267)
T 3vnd_A          104 -------ANL----V---FANGIDEFYTKAQAAGVDSVLIADVP----------------VEESAPFSKAAKAHGIAPIF  153 (267)
T ss_dssp             -------HHH----H---HHHCHHHHHHHHHHHTCCEEEETTSC----------------GGGCHHHHHHHHHTTCEEEC
T ss_pred             -------CcH----H---HHhhHHHHHHHHHHcCCCEEEeCCCC----------------HhhHHHHHHHHHHcCCeEEE
Confidence                   010    0   00112347889999999998885422                12345778999999998642


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                       +.       +-.++.+.+.++++..... +..+.+..++|...  |..+.++++.+|+... .|+.+    .+|.....
T Consensus       154 -li-------aP~t~~eri~~i~~~~~gf-vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~-~pv~v----GfGI~~~e  219 (267)
T 3vnd_A          154 -IA-------PPNADADTLKMVSEQGEGY-TYLLSRAGVTGTESKAGEPIENILTQLAEFNA-PPPLL----GFGIAEPE  219 (267)
T ss_dssp             -EE-------CTTCCHHHHHHHHHHCCSC-EEESCCCCCC--------CHHHHHHHHHTTTC-CCEEE----CSSCCSHH
T ss_pred             -EE-------CCCCCHHHHHHHHHhCCCc-EEEEecCCCCCCccCCcHHHHHHHHHHHHhcC-CCEEE----ECCcCCHH
Confidence             11       1223566666666543222 34445577778764  6778999999998754 46777    78888677


Q ss_pred             HHH-HHHcCCCEE
Q 012949          365 ILI-SLQMGISTV  376 (452)
Q Consensus       365 aLa-Al~aGa~~V  376 (452)
                      ... ++.+|||.|
T Consensus       220 ~~~~~~~~gADgv  232 (267)
T 3vnd_A          220 QVRAAIKAGAAGA  232 (267)
T ss_dssp             HHHHHHHTTCSEE
T ss_pred             HHHHHHHcCCCEE
Confidence            777 999999855

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.11  E-value=3e-05  Score=75.53  Aligned_cols=181  Identities=14%  Similarity=0.097  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHH--------------------HHHHHHHhc-cCCceeEEec
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADAR--------------------DVMEAVRDL-EGARLPVLTP  202 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e--------------------~v~~~i~~~-~~~~l~~l~~  202 (452)
                      .++.+...++++.|.+.|+|.||+|.|.+.   |. .|..                    ++++.+++. .++.+..++-
T Consensus        27 dp~~~~~~~~~~~l~~~GaD~ieig~P~sd---p~-~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y  102 (268)
T 1qop_A           27 DPGIEQSLKIIDTLIDAGADALELGVPFSD---PL-ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMY  102 (268)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSC---CT-TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCC---cc-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEc
Confidence            567889999999999999999999986532   11 1211                    223333332 3333222220


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                                 |.+.       ++....+.++.+.++|++.|.+..-..                +.+.+.++.+|++|+
T Consensus       103 -----------~n~v-------~~~g~~~~~~~~~~aGadgii~~d~~~----------------e~~~~~~~~~~~~g~  148 (268)
T 1qop_A          103 -----------ANLV-------FNNGIDAFYARCEQVGVDSVLVADVPV----------------EESAPFRQAALRHNI  148 (268)
T ss_dssp             -----------HHHH-------HTTCHHHHHHHHHHHTCCEEEETTCCG----------------GGCHHHHHHHHHTTC
T ss_pred             -----------ccHH-------HHhhHHHHHHHHHHcCCCEEEEcCCCH----------------HHHHHHHHHHHHcCC
Confidence                       1110       001123588999999999877753221                334567789999998


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      ++.. ++    .|.   ++.+.+..+++..... +..+.+..++|..+|  ..+.++++.+++.. +.+|.+    +.|.
T Consensus       149 ~~i~-l~----~p~---t~~~~i~~i~~~~~g~-v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~v----ggGI  214 (268)
T 1qop_A          149 APIF-IC----PPN---ADDDLLRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQ----GFGI  214 (268)
T ss_dssp             EEEC-EE----CTT---CCHHHHHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEE----ESSC
T ss_pred             cEEE-EE----CCC---CCHHHHHHHHhhCCCc-EEEEecCCcCCCccCCCchHHHHHHHHHhcc-CCcEEE----ECCC
Confidence            7531 11    222   4567777776654322 334455678888544  55778889998865 456777    8888


Q ss_pred             HHHHHHHH-HHcCCCEE
Q 012949          361 SLPNILIS-LQMGISTV  376 (452)
Q Consensus       361 A~ANaLaA-l~aGa~~V  376 (452)
                      ..++.+.. +.+|||.|
T Consensus       215 ~t~e~~~~~~~agAD~v  231 (268)
T 1qop_A          215 SSPEQVSAAVRAGAAGA  231 (268)
T ss_dssp             CSHHHHHHHHHTTCSEE
T ss_pred             CCHHHHHHHHHcCCCEE
Confidence            85555544 99999854

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.07  E-value=1.1e-05  Score=74.84  Aligned_cols=173  Identities=14%  Similarity=0.143  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.++.+++++.|. -|++.||+|++-+      +....+.++.+++. ++..+.+   ++.        +.+.     
T Consensus         9 ~~~~~~~~~~~~~~~-~~~diie~G~p~~------~~~g~~~i~~ir~~~~~~~i~~---~~~--------~~~~-----   65 (211)
T 3f4w_A            9 ELTLPEAMVFMDKVV-DDVDIIEVGTPFL------IREGVNAIKAIKEKYPHKEVLA---DAK--------IMDG-----   65 (211)
T ss_dssp             SCCHHHHHHHHHHHG-GGCSEEEECHHHH------HHHTTHHHHHHHHHCTTSEEEE---EEE--------ECSC-----
T ss_pred             CCCHHHHHHHHHHhh-cCccEEEeCcHHH------HhccHHHHHHHHHhCCCCEEEE---EEE--------eccc-----
Confidence            357889999999996 6999999997321      11112456667654 4443321   111        0000     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            ....++.++++|++.|.+.....+               +.+.+++++++++|+++.+.+.    +|    .+ 
T Consensus        66 ------~~~~~~~~~~~Gad~v~v~~~~~~---------------~~~~~~~~~~~~~g~~~~v~~~----~~----~t-  115 (211)
T 3f4w_A           66 ------GHFESQLLFDAGADYVTVLGVTDV---------------LTIQSCIRAAKEAGKQVVVDMI----CV----DD-  115 (211)
T ss_dssp             ------HHHHHHHHHHTTCSEEEEETTSCH---------------HHHHHHHHHHHHHTCEEEEECT----TC----SS-
T ss_pred             ------hHHHHHHHHhcCCCEEEEeCCCCh---------------hHHHHHHHHHHHcCCeEEEEec----CC----CC-
Confidence                  012488999999999998654322               3445778888999988753111    11    22 


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                        ..+.++.+.++|++.|++-  .|..   .+....+.++.+++.+|..++.+    +.|....|...++++||+.|=
T Consensus       116 --~~~~~~~~~~~g~d~i~v~--~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~----~gGI~~~~~~~~~~~Gad~vv  185 (211)
T 3f4w_A          116 --LPARVRLLEEAGADMLAVH--TGTDQQAAGRKPIDDLITMLKVRRKARIAV----AGGISSQTVKDYALLGPDVVI  185 (211)
T ss_dssp             --HHHHHHHHHHHTCCEEEEE--CCHHHHHTTCCSHHHHHHHHHHCSSCEEEE----ESSCCTTTHHHHHTTCCSEEE
T ss_pred             --HHHHHHHHHHcCCCEEEEc--CCCcccccCCCCHHHHHHHHHHcCCCcEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence              2455677778899998773  2311   11113467788888776666665    556666788889999999664

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=98.05  E-value=0.0004  Score=69.03  Aligned_cols=231  Identities=16%  Similarity=0.088  Sum_probs=138.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .++.++.++.++.+.+.|++.|-++..-.|. .+ ..+..++++.+++. +..+. +.++.                   
T Consensus        83 ~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~-~~-~~~~~~li~~i~~~-~~~i~-~s~g~-------------------  139 (348)
T 3iix_A           83 RMTPEEIVERARLAVQFGAKTIVLQSGEDPY-XM-PDVISDIVKEIKKM-GVAVT-LSLGE-------------------  139 (348)
T ss_dssp             BCCHHHHHHHHHHHHHTTCSEEEEEESCCGG-GT-THHHHHHHHHHHTT-SCEEE-EECCC-------------------
T ss_pred             eCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-cc-HHHHHHHHHHHHhc-CceEE-EecCC-------------------
Confidence            4799999999999999999998886533221 11 01223344444433 33332 12221                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCC-h-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASAS-E-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                          ...+.++...++|++.+.+..-.. + .+.+..-+.+    ++...+.++.+++.|+++...++  +|.|..   +
T Consensus       140 ----l~~e~l~~L~~ag~~~v~i~let~~~~~~~~i~~~~~----~~~~~~~i~~~~~~Gi~v~~~~i--~G~p~e---t  206 (348)
T 3iix_A          140 ----WPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTS----FENRLNCLLTLKELGYETGAGSM--VGLPGQ---T  206 (348)
T ss_dssp             ----CCHHHHHHHHHHTCCEEECCCBCSCHHHHHHHSTTSC----HHHHHHHHHHHHHTTCEEEECBE--ESCTTC---C
T ss_pred             ----CCHHHHHHHHHhCCCEEeeeeeeCCHHHHHHhCCCcC----HHHHHHHHHHHHHhCCeeccceE--EeCCCC---C
Confidence                123578889999999998765443 3 3322222334    44555677889999998775554  555543   5


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE------cCCc----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC---cHHHHHHHH
Q 012949          302 PSKVAYVAKELHDMGCFEISL------GDTI----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG---QSLPNILIS  368 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L------~DT~----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G---lA~ANaLaA  368 (452)
                      .+.+.+.++.+.+.|++.+.+      ++|-    ...+++++..+++.++..+|...|-    .+.+   +.......|
T Consensus       207 ~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~----~~~~~~~~~~~~~~~~  282 (348)
T 3iix_A          207 IDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIP----ATTAMGTIVPGGREIT  282 (348)
T ss_dssp             HHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCB----CCHHHHHHSTTHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCch----hcchhhhcCHHHHHHH
Confidence            788888888888888876553      3332    2346788889999888888874222    2211   112335678


Q ss_pred             HHcCCCEEeecc--cCCCCCCCC-------CCCCCcccHHHHHHHHHcCCCCCCCC
Q 012949          369 LQMGISTVDCSV--AGLGGCPYA-------KGASGNVATEDVVYMLSGLGVETNVD  415 (452)
Q Consensus       369 l~aGa~~VD~Sv--~GlGecP~a-------~graGNaalE~vv~~L~~~Gi~t~iD  415 (452)
                      +.+||+.|-..+  .+.-+ .|.       .+-.-.-..++++..++..|+.+..+
T Consensus       283 l~~Gan~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  337 (348)
T 3iix_A          283 LRCGANVIMPNWTPSPYRQ-LYQLYPGKICVFEKDTACIPCVMKMIELLGRKPGRD  337 (348)
T ss_dssp             HTTTCCEECCBCCCTTTGG-GCCSSSCCTTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred             HhcCCcEEeCCCCchhccc-ccccCCCCcccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence            999999886332  22211 000       01112345777877887777765443

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=97.72  E-value=0.0076  Score=60.68  Aligned_cols=221  Identities=13%  Similarity=0.052  Sum_probs=140.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.++.++.++.+.+.|++.|-++... .|.    ..+.+.+.+.++.+  .+..+. +.++..               
T Consensus        98 ~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~----~~~~~~l~~ll~~ik~~g~~i~-~t~G~l---------------  157 (369)
T 1r30_A           98 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLEAC-MTLGTL---------------  157 (369)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC----TTTHHHHHHHHHHHHHTTSEEE-EECSSC---------------
T ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCC----cCCHHHHHHHHHHHHHcCCeEE-EecCCC---------------
Confidence            4789999999999999999998886422 221    12344555555433  244443 233321               


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNIN-CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~-~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                              ..+.++..+++|++.+.+.+..++-..+..-+ .+.++    ..+.++.+++.|+.|...++  +|. .   
T Consensus       158 --------~~e~l~~L~~aGvd~v~i~les~~e~~~~i~~~~~~~~----~l~~i~~a~~~Gi~v~~~~I--~Gl-~---  219 (369)
T 1r30_A          158 --------SESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQE----RLDTLEKVRDAGIKVCSGGI--VGL-G---  219 (369)
T ss_dssp             --------CHHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHH----HHHHHHHHHHHHCEEECCEE--ECS-S---
T ss_pred             --------CHHHHHHHHHCCCCEEeecCcCCHHHHHHhCCCCCHHH----HHHHHHHHHHcCCeeeeeeE--eeC-C---
Confidence                    23578888999999999887666544333322 34444    44566788888998775554  442 1   


Q ss_pred             CCHHHHHHHHHHHHHCC--cCEEEE------cCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc-CcHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMG--CFEISL------GDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQSLPNIL  366 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~G--ad~I~L------~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~-GlA~ANaL  366 (452)
                      -+.+.+.+.++.+.+.+  ++.|.+      ++|    ....++.+..++++..+..+|..  .+|.-.-+ .+.-....
T Consensus       220 et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~--~i~i~~~~~~l~~~~~~  297 (369)
T 1r30_A          220 ETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTS--YVRLSAGREQMNEQTQA  297 (369)
T ss_dssp             CCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTS--EEEEESSGGGSCHHHHH
T ss_pred             CCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCC--ceEeecchhhcChHHHH
Confidence            25788889999999987  776654      333    12356788899999999888873  33322111 12233466


Q ss_pred             HHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          367 ISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       367 aAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      .++.+||+.+   +.  |+ .  .-.++|...++.+.+++..|..+
T Consensus       298 ~~l~~Gan~~---~~--g~-~--~~t~~~~~~~~~~~~i~~~g~~~  335 (369)
T 1r30_A          298 MCFMAGANSI---FY--GC-K--LLTTPNPEEDKDLQLFRKLGLNP  335 (369)
T ss_dssp             HHHHHTCCEE---EC--SS-B--SSSSBCCCHHHHHHHHHHTTCCS
T ss_pred             HHhhCCCceE---Ee--CC-e--eeCCCCCCHHHHHHHHHHcCCCe
Confidence            7899999943   22  22 0  01346788999999999888754

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=97.72  E-value=0.00036  Score=67.21  Aligned_cols=179  Identities=18%  Similarity=0.187  Sum_probs=105.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC----cccc--------cCCHHHHHHHHHh---ccCCceeEEe-cchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK----WVPQ--------LADARDVMEAVRD---LEGARLPVLT-PNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~----~~p~--------~~D~e~v~~~i~~---~~~~~l~~l~-~~~~~  206 (452)
                      .++.+...++++.|.+.|++.||+|.+.+ |-    .++.        -.+.++.++.+++   ..++.+.++. .+.. 
T Consensus        28 ~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~-  106 (262)
T 1rd5_A           28 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPI-  106 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHH-
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHH-
Confidence            35668999999999999999999997643 21    0000        0122333344433   3233322221 1100 


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                                     .       ..+++.+.++|++.|.+..-.                ++.+.+.++.+|++|+++..
T Consensus       107 ---------------~-------~~~~~~a~~aGadgv~v~d~~----------------~~~~~~~~~~~~~~g~~~i~  148 (262)
T 1rd5_A          107 ---------------M-------FRSLAKMKEAGVHGLIVPDLP----------------YVAAHSLWSEAKNNNLELVL  148 (262)
T ss_dssp             ---------------H-------SCCTHHHHHTTCCEEECTTCB----------------TTTHHHHHHHHHHTTCEECE
T ss_pred             ---------------H-------HHHHHHHHHcCCCEEEEcCCC----------------hhhHHHHHHHHHHcCCceEE
Confidence                           0       015566999999988874321                12345777889999988542


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEE---EcCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEIS---LGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~---L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      .++     |   .++.+.+..+.+.    +.+.++   +..+.|.  ..+....++++.+++..+ .+|.+    +.|..
T Consensus       149 ~~a-----~---~t~~e~~~~~~~~----~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~-~pI~v----gGGI~  211 (262)
T 1rd5_A          149 LTT-----P---AIPEDRMKEITKA----SEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTN-KPVAV----GFGIS  211 (262)
T ss_dssp             EEC-----T---TSCHHHHHHHHHH----CCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCS-SCEEE----ESCCC
T ss_pred             EEC-----C---CCCHHHHHHHHhc----CCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcC-CeEEE----ECCcC
Confidence            121     1   2345555544433    223333   3444565  344667788999998763 46766    88998


Q ss_pred             -HHHHHHHHHcCCCEEee
Q 012949          362 -LPNILISLQMGISTVDC  378 (452)
Q Consensus       362 -~ANaLaAl~aGa~~VD~  378 (452)
                       ..|+.+.+++||+.|-+
T Consensus       212 ~~e~~~~~~~~GAdgvvV  229 (262)
T 1rd5_A          212 KPEHVKQIAQWGADGVII  229 (262)
T ss_dssp             SHHHHHHHHHTTCSEEEE
T ss_pred             CHHHHHHHHHcCCCEEEE
Confidence             67777778899997653

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=97.59  E-value=0.00057  Score=66.28  Aligned_cols=186  Identities=11%  Similarity=0.103  Sum_probs=112.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-cccccC-----------CHHHHHHHHHhccCCceeEEecchhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQLA-----------DARDVMEAVRDLEGARLPVLTPNLKVILQR  210 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~~-----------D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r  210 (452)
                      ..+.+.-.++++.|.+.|.|.||+|.|-| |. -.|...           +.+++++.++++... ++.+.         
T Consensus        24 ~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~Pivl---------   93 (252)
T 3tha_A           24 YPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK-KALVF---------   93 (252)
T ss_dssp             SSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS-SEEEE---------
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC-CCEEE---------
Confidence            46789999999999999999999998754 32 112111           235566666654321 22211         


Q ss_pred             hhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949          211 SILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                       |+|-..   +   ++....+.++.+.++|++.+-+.+-.                ++...+..+.++++|+.... +. 
T Consensus        94 -m~Y~N~---i---~~~G~e~F~~~~~~aGvdG~IipDLP----------------~eE~~~~~~~~~~~Gl~~I~-lv-  148 (252)
T 3tha_A           94 -MVYYNL---I---FSYGLEKFVKKAKSLGICALIVPELS----------------FEESDDLIKECERYNIALIT-LV-  148 (252)
T ss_dssp             -ECCHHH---H---HHHCHHHHHHHHHHTTEEEEECTTCC----------------GGGCHHHHHHHHHTTCEECE-EE-
T ss_pred             -EeccCH---H---HHhhHHHHHHHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEE-Ee-
Confidence             111110   0   01122357889999999998876521                12235677889999998632 22 


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                         .|   .++.+.+.++++..... +..+....++|...+  ..+.++++.+|+... .|+.+    -+|.......++
T Consensus       149 ---aP---~t~~eRi~~ia~~a~gF-iY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~~-~Pv~v----GfGIst~e~a~~  216 (252)
T 3tha_A          149 ---SV---TTPKERVKKLVKHAKGF-IYLLASIGITGTKSVEEAILQDKVKEIRSFTN-LPIFV----GFGIQNNQDVKR  216 (252)
T ss_dssp             ---ET---TSCHHHHHHHHTTCCSC-EEEECCSCSSSCSHHHHHHHHHHHHHHHTTCC-SCEEE----ESSCCSHHHHHH
T ss_pred             ---CC---CCcHHHHHHHHHhCCCe-EEEEecCCCCCcccCCCHHHHHHHHHHHHhcC-CcEEE----EcCcCCHHHHHH
Confidence               12   23456666555432111 234444456777654  457899999998753 46766    567777777777


Q ss_pred             HHcCCCEE
Q 012949          369 LQMGISTV  376 (452)
Q Consensus       369 l~aGa~~V  376 (452)
                      +..+||.|
T Consensus       217 ~~~~ADGV  224 (252)
T 3tha_A          217 MRKVADGV  224 (252)
T ss_dssp             HTTTSSEE
T ss_pred             HHhcCCEE
Confidence            77777754

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=97.57  E-value=0.0079  Score=59.24  Aligned_cols=224  Identities=13%  Similarity=0.070  Sum_probs=138.7

Q ss_pred             cCCCchhhHHHHHhhhcCCC--C------------ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecC
Q 012949          105 SNCNDKDIRDITNKFLKGIP--R------------FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSF  170 (452)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~p--~------------~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~  170 (452)
                      ...++.+++.+.+.+.+.+|  .            -.+.+|-|+      .+-..+.++..++++...+.|+..|.+-  
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~IDhTl------L~p~~T~~dI~~lc~eA~~~g~aaVCV~--   94 (288)
T 3oa3_A           23 SSLNNEEWDLLISGKKATLQYPIPLLCYPAPEVVSIAQIIDHTQ------LSLSATGSQIDVLCAEAKEYGFATVCVR--   94 (288)
T ss_dssp             TTCCHHHHHHHHHHHHTTSCSSCCCSCSCCCCGGGGGGGEEEEC------CCTTCCHHHHHHHHHHHHHHTCSEEEEC--
T ss_pred             CCCCcHHHHHHHHHHHHhcCCccccccCCCCCHHHHHHhcCccc------CCCCCCHHHHHHHHHHHHhcCCcEEEEC--
Confidence            34577788888888777763  1            244566665      2235688999999999999999999883  


Q ss_pred             CCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEe
Q 012949          171 VSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFA  248 (452)
Q Consensus       171 ~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~  248 (452)
                        |.|++      ...+.++. .++++..++  |.-           ..+.+       .....++.|++.|+++|.+.+
T Consensus        95 --P~~V~------~a~~~L~~-s~V~V~tVigFP~G-----------~~~~~-------~Kv~Ea~~Ai~~GAdEIDmVI  147 (288)
T 3oa3_A           95 --PDYVS------RAVQYLQG-TQVGVTCVIGFHEG-----------TYSTD-------QKVSEAKRAMQNGASELDMVM  147 (288)
T ss_dssp             --GGGHH------HHHHHTTT-SSCEEEEEESTTTS-----------CSCHH-------HHHHHHHHHHHTTCSEEEEEC
T ss_pred             --HHHHH------HHHHHcCC-CCCeEEEEeCCCCC-----------CCcHH-------HHHHHHHHHHHcCCCEEEEEe
Confidence              33333      22333322 245554433  211           11111       123478889999999999998


Q ss_pred             cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC--Cc
Q 012949          249 SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD--TI  326 (452)
Q Consensus       249 s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~  326 (452)
                      .....     .....++..+.+..+.+.|.+..++|.    ..     .+..+.+.+...++.+.++|||-|--.-  +.
T Consensus       148 Nig~l-----k~g~~~~v~~eI~~V~~a~~~~~lKVI----lE-----t~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~  213 (288)
T 3oa3_A          148 NYPWL-----SEKRYTDVFQDIRAVRLAAKDAILKVI----LE-----TSQLTADEIIAGCVLSSLAGADYVKTSTGFNG  213 (288)
T ss_dssp             CHHHH-----HTTCHHHHHHHHHHHHHHTTTSEEEEE----CC-----GGGCCHHHHHHHHHHHHHTTCSEEECCCSSSS
T ss_pred             ehhhh-----cCCcHHHHHHHHHHHHHHhcCCCceEE----EE-----CCCCCHHHHHHHHHHHHHcCCCEEEcCCCCCC
Confidence            65432     223456777777777776655333332    21     1245678888899999999999887762  12


Q ss_pred             CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          327 GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       327 G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      |.++++.+.-| +.+.+.++. ++.+-.-----. ...+++-+++||++|-+|.
T Consensus       214 ~GAT~edv~lm-r~~v~~~g~-~v~VKAAGGIrt-~edAl~mi~aGA~RiGtS~  264 (288)
T 3oa3_A          214 PGASIENVSLM-SAVCDSLQS-ETRVKASGGIRT-IEDCVKMVRAGAERLGASA  264 (288)
T ss_dssp             CCCCHHHHHHH-HHHHHHSSS-CCEEEEESSCCS-HHHHHHHHHTTCSEEEESC
T ss_pred             CCCCHHHHHHH-HHHHHHhCC-CceEEEeCCCCC-HHHHHHHHHcCCceeehhh
Confidence            46688887654 444443322 344443222121 2788889999999886653

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=97.45  E-value=0.0044  Score=64.42  Aligned_cols=146  Identities=14%  Similarity=0.058  Sum_probs=99.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEEeeecCCCC------------
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG-YVSCVVGCPVE------------  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~-~l~~~~g~p~~------------  297 (452)
                      +.+.+++++|...|++=.|..+.  ..|...|.+-.+++..+++++|++.+..+.. .+.++.|.++.            
T Consensus       115 e~i~~aI~AGFtSVMiD~S~~p~--eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtEvpvpGGa~~~~~~~  192 (450)
T 3txv_A          115 AMITAYAKAGFTKLHLDTSMGCA--GEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVPIPGGALEELDTL  192 (450)
T ss_dssp             HHHHHHHTTTCCEEEECCCBCCS--SSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC-------------C
T ss_pred             HHHHHHHHcCCCEEEECCCCCch--hhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeeecCCCCccccccccC
Confidence            47788999999999986665553  5678889999999999999999987554421 24455676552            


Q ss_pred             CCCCHHHHHHHHHH----HHHCCcC-----EEEEcCCcCCCcH-----HHHHHHHHHHHHhCCCcc-EEEEeCCCcCcHH
Q 012949          298 GAIPPSKVAYVAKE----LHDMGCF-----EISLGDTIGVGTP-----GTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSL  362 (452)
Q Consensus       298 ~r~d~e~l~~~a~~----l~~~Gad-----~I~L~DT~G~~~P-----~~v~~li~~l~~~~p~~~-l~vH~Hnd~GlA~  362 (452)
                      ..++|+...+.++.    +.+.|++     .+.|+=..|+..-     .-=.+.++.|++.++..| |.+|.|++-|+.-
T Consensus       193 ~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~~~~L~~~v~~~P~LVlhghStDy~~~  272 (450)
T 3txv_A          193 EVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRARAEKLSATLGQLHGMVFEAHSTDYQTP  272 (450)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTTTSHHHHGGGTSTTCEEEESCCTTCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHHHHHHHHHhccCCCEEEecCCCCCCCH
Confidence            24788877766653    4455663     4455544554431     000124445555554455 9999999999999


Q ss_pred             HHHHHHHHcCCCEEee
Q 012949          363 PNILISLQMGISTVDC  378 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~  378 (452)
                      .+...+++.|+..+++
T Consensus       273 e~l~~~V~~GiaklNV  288 (450)
T 3txv_A          273 DALRELVADGFAILKV  288 (450)
T ss_dssp             HHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHcCCcEEEE
Confidence            9999999999998876

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=97.16  E-value=0.022  Score=55.35  Aligned_cols=199  Identities=13%  Similarity=0.059  Sum_probs=122.9

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      .+|-|+=      +...+.++..++++...+.|+..+.+    +|.|+|      ...+.++. .++++...+ +..   
T Consensus        46 ~IDhTlL------~p~~t~~~I~~lc~eA~~~~~aaVCV----~p~~V~------~a~~~L~g-s~v~v~tVi-gFP---  104 (260)
T 3r12_A           46 AIEHTNL------KPFATPDDIKKLCLEARENRFHGVCV----NPCYVK------LAREELEG-TDVKVVTVV-GFP---  104 (260)
T ss_dssp             HEEEEEC------CTTCCHHHHHHHHHHHHHTTCSEEEE----CGGGHH------HHHHHHTT-SCCEEEEEE-STT---
T ss_pred             hcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEE----CHHHHH------HHHHHhcC-CCCeEEEEe-cCC---
Confidence            5677772      22568899999999999999999998    333443      22333322 345555433 110   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                           ++..+.+       +....++.|++.|++.|.+.+.....     .....++..+.+..+++.+.  |..+-  +
T Consensus       105 -----~G~~~~~-------~Kv~Ea~~Ai~~GAdEIDmViNig~l-----k~g~~~~v~~eI~~v~~a~~--~~~lK--V  163 (260)
T 3r12_A          105 -----LGANETR-------TKAHEAIFAVESGADEIDMVINVGML-----KAKEWEYVYEDIRSVVESVK--GKVVK--V  163 (260)
T ss_dssp             -----TCCSCHH-------HHHHHHHHHHHHTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEE--E
T ss_pred             -----CCCCcHH-------HHHHHHHHHHHcCCCEEEEEeehhhh-----ccccHHHHHHHHHHHHHhcC--CCcEE--E
Confidence                 1111111       12347788999999999999876543     12346677777777776654  44332  2


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                      ...     .+..+.+.+.+.++.+.++|||-|--.-  ..|.++++++.-+-+.+    +. ++.+-.-----. ...++
T Consensus       164 IlE-----t~~Lt~eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edV~lm~~~v----g~-~v~VKaAGGIrt-~~~al  232 (260)
T 3r12_A          164 IIE-----TCYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIV----GD-EMGVKASGGIRT-FEDAV  232 (260)
T ss_dssp             ECC-----GGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHH----CT-TSEEEEESSCCS-HHHHH
T ss_pred             EEe-----CCCCCHHHHHHHHHHHHHhCcCEEEcCCCCCCCCCCHHHHHHHHHHh----CC-CceEEEeCCCCC-HHHHH
Confidence            221     1345778899999999999999887762  12356777776665544    32 344443322221 26777


Q ss_pred             HHHHcCCCEEeecc
Q 012949          367 ISLQMGISTVDCSV  380 (452)
Q Consensus       367 aAl~aGa~~VD~Sv  380 (452)
                      +=+++||+++-+|-
T Consensus       233 ~mi~aGA~RiGtS~  246 (260)
T 3r12_A          233 KMIMYGADRIGTSS  246 (260)
T ss_dssp             HHHHTTCSEEEESC
T ss_pred             HHHHcCCceeecch
Confidence            77999999987664

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=96.97  E-value=0.012  Score=57.07  Aligned_cols=189  Identities=18%  Similarity=0.118  Sum_probs=115.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhh-hhccchhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILF-QQCHASVISS  224 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~-~~~~~~~i~~  224 (452)
                      +.++..++++...+.|++.+-+..    .          ..+... ..+..+.+-+..       ..+| .+.+...   
T Consensus        39 ~~~di~~~~~~a~~~~~~av~v~~----~----------~v~~~~-~~~~~liv~~~~-------~~~~~g~~~~~~---   93 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGVVFQR----G----------IAEKYY-DGSVPLILKLNG-------KTTLYNGEPVSV---   93 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEEEECH----H----------HHHHHC-CSSSCEEEECEE-------CCTTCCSSCCCE---
T ss_pred             chhhHHHHHHHHHhhCCCEEEECH----H----------HHHHhh-cCCCcEEEEEeC-------CCCcCCCCccch---
Confidence            577888999999999999999842    1          122222 222221110000       0111 1111110   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          ....++.|++.|++.|.+.....+        .+.++.++.+.++++.+++.|+++... ++.-|.......+++.
T Consensus        94 ----~~~~ve~Ai~~Ga~~v~~~~nig~--------~~~~~~~~~~~~v~~~~~~~~~~vIi~-~~~~G~~~~~~~s~~~  160 (263)
T 1w8s_A           94 ----ANCSVEEAVSLGASAVGYTIYPGS--------GFEWKMFEELARIKRDAVKFDLPLVVE-SFPRGGKVVNETAPEI  160 (263)
T ss_dssp             ----ESSCHHHHHHTTCSEEEEEECTTS--------TTHHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHH
T ss_pred             ----HHHHHHHHHHCCCCEEEEEEecCC--------cCHHHHHHHHHHHHHHHHHcCCeEEEE-eeCCCCccccCCCHHH
Confidence                113788999999999988763221        235678899999999999999997543 3322211111126788


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC--CcCcHHHHHHHHHHcCCCEEee
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--TYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--d~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.++.+.++|||.|-.. +.|  +|+.++++.+.. ...|.  +..=.=.  |...+++|.-.++++||+.+-.
T Consensus       161 i~~a~~~a~~~GAD~vkt~-~~~--~~e~~~~~~~~~-~~~pV--~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsv  230 (263)
T 1w8s_A          161 VAYAARIALELGADAMKIK-YTG--DPKTFSWAVKVA-GKVPV--LMSGGPKTKTEEDFLKQVEGVLEAGALGIAV  230 (263)
T ss_dssp             HHHHHHHHHHHTCSEEEEE-CCS--SHHHHHHHHHHT-TTSCE--EEECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEc-CCC--CHHHHHHHHHhC-CCCeE--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            8888899999999998888 432  566666655443 22242  2222223  7788899999999999985543

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=96.97  E-value=0.089  Score=51.57  Aligned_cols=201  Identities=15%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             cEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccC---CHHHHHHHHHhcc--CCce
Q 012949          127 VKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLA---DARDVMEAVRDLE--GARL  197 (452)
Q Consensus       127 V~I~D~TL---RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~---D~e~v~~~i~~~~--~~~l  197 (452)
                      .-|+.+|+   =||.+    .++.+..++.++.+.+.|-+.|++|.-+ .|.. +.+.   +.+.+...++.+.  ++.+
T Consensus         9 mgilN~TpDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga-~~v~~~eE~~Rv~pvi~~l~~~~~pi   83 (280)
T 1eye_A            9 MGVLNVTDDSFSDGGC----YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGA-TRVDPAVETSRVIPVVKELAAQGITV   83 (280)
T ss_dssp             EEEEECSCCTTCSSCC----CCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHTTCCE
T ss_pred             EEEEeCCCCCcCCCcc----cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCC-CCCCHHHHHHHHHHHHHHhhcCCCEE
Confidence            34566666   45544    4789999999999999999999999632 2321 1121   1222233333332  4444


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++=+..                          .+-+++|+++|++.|.=.....                 ...++++.+
T Consensus        84 SIDT~~--------------------------~~va~aAl~aGa~iINdvsg~~-----------------~d~~m~~~~  120 (280)
T 1eye_A           84 SIDTMR--------------------------ADVARAALQNGAQMVNDVSGGR-----------------ADPAMGPLL  120 (280)
T ss_dssp             EEECSC--------------------------HHHHHHHHHTTCCEEEETTTTS-----------------SCTTHHHHH
T ss_pred             EEeCCC--------------------------HHHHHHHHHcCCCEEEECCCCC-----------------CCHHHHHHH
Confidence            432222                          2377899999998776332211                 011345667


Q ss_pred             HhCCCcEEEEEEeeecCCCCCC-----C-C-----HHHHHHHHHHHHHCCcC--EEEEcCC-cCCC-cHHHHHHHHHHHH
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGA-----I-P-----PSKVAYVAKELHDMGCF--EISLGDT-IGVG-TPGTVVPMLEAVM  342 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r-----~-d-----~e~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~li~~l~  342 (452)
                      ++.|..+.  ++..-|.|..-.     + +     .+++.+.++.+.++|++  .|.| |. +|.. +.++-.++++.+.
T Consensus       121 a~~~~~vV--lmh~~G~p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~Iil-DPg~Gf~k~~~~n~~ll~~l~  197 (280)
T 1eye_A          121 AEADVPWV--LMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVL-DPGLGFAKTAQHNWAILHALP  197 (280)
T ss_dssp             HHHTCCEE--EECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCTTSSCCHHHHHHHHHTHH
T ss_pred             HHhCCeEE--EEcCCCCCcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEE-ECCCCcccCHHHHHHHHHHHH
Confidence            78888775  555444443211     1 1     56777788889999987  6666 54 2322 3566667776665


Q ss_pred             HhC-CCccEEEEeCCCc-----------C----------cHHHHHHHHHHcCCCEEeec
Q 012949          343 AVV-PVEKLAVHLHDTY-----------G----------QSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       343 ~~~-p~~~l~vH~Hnd~-----------G----------lA~ANaLaAl~aGa~~VD~S  379 (452)
                      .-- ++.|+-+ +..+-           |          .-.|-+..|++.|+++|.+.
T Consensus       198 ~~~~~g~Pvl~-G~Srksfi~~~~~~~~g~~~~~~~R~~~t~a~~~~a~~~Ga~Ivrvh  255 (280)
T 1eye_A          198 ELVATGIPVLV-GASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVH  255 (280)
T ss_dssp             HHHTTSSCBEE-CCTTCHHHHHHTCCSSSCCCCGGGGHHHHHHHHHHHHHTTCSEEEES
T ss_pred             HhhcCCCCEEE-EecchHHHHhhhccccCCCCCcccchHHHHHHHHHHHHcCCCEEEeC
Confidence            421 3333333 22220           2          23455667778888877553

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=96.88  E-value=0.034  Score=54.82  Aligned_cols=202  Identities=18%  Similarity=0.170  Sum_probs=130.8

Q ss_pred             cCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c--CCceeEEecchhhhhhhh
Q 012949          137 GLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E--GARLPVLTPNLKVILQRS  211 (452)
Q Consensus       137 G~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~--~~~l~~l~~~~~~~i~r~  211 (452)
                      +.+..+.  ..+.+....+++...+.+-+.|--.++..-++.   ...+.+...++.. .  ...+++.+.. .      
T Consensus        19 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~---~g~~~~~~~v~~~A~~~~~~VPValHl-D------   88 (288)
T 3q94_A           19 GKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIHL-D------   88 (288)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHT---SCHHHHHHHHHHHHHHTTCCSCEEEEE-E------
T ss_pred             CCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhhc---CCHHHHHHHHHHHHHhcCCCCcEEEEC-C------
Confidence            4454443  478899999999999999997765443211110   1222233333321 2  3344432211 0      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV  291 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~  291 (452)
                          .+          ...+.+.+|+++|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-..
T Consensus        89 ----Hg----------~~~e~i~~ai~~GFtSVMiDgS~----------~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~v  144 (288)
T 3q94_A           89 ----HG----------SSFEKCKEAIDAGFTSVMIDASH----------HPFEENVETTKKVVEYAHARNVSVEAELGTV  144 (288)
T ss_dssp             ----EE----------CSHHHHHHHHHHTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTCEEEEEESBC
T ss_pred             ----CC----------CCHHHHHHHHHcCCCeEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeee
Confidence                01          02357889999999988874443          2468999999999999999999999888876


Q ss_pred             ecCCCC------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          292 VGCPVE------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       292 ~g~p~~------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      -|.+|.      ..++|+...+++++   .|+|.+.++  -.=|.-  .|.-=.++++.+++.+| +||.+|+=  -|..
T Consensus       145 gG~Ed~~~~~~~~yT~Peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~-vpLVlHGg--SG~~  218 (288)
T 3q94_A          145 GGQEDDVIAEGVIYADPAECKHLVEA---TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHGG--TGIP  218 (288)
T ss_dssp             BCSCSSCGGGGCBCCCHHHHHHHHHH---HCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHC-SCEEECCC--TTCC
T ss_pred             ccccCCcCCccccCCCHHHHHHHHHH---HCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcC-CCEEEeCC--CCCC
Confidence            555543      25889988887764   489866653  222221  13223456677777776 57887765  4888


Q ss_pred             HHHHHHHHHcCCCEEee
Q 012949          362 LPNILISLQMGISTVDC  378 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~  378 (452)
                      -.....|+..|+.-|+.
T Consensus       219 ~e~i~~ai~~Gv~KiNi  235 (288)
T 3q94_A          219 TADIEKAISLGTSKINV  235 (288)
T ss_dssp             HHHHHHHHHTTEEEEEE
T ss_pred             HHHHHHHHHcCCeEEEE
Confidence            89999999999876643

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=96.87  E-value=0.0089  Score=57.20  Aligned_cols=154  Identities=19%  Similarity=0.111  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      -+.++-.++++.|.+.|++.||+++-. |       +..+.++.+++ .++..+.+-+  .                   
T Consensus        43 ~~~~~a~~~a~al~~gGi~~iEvt~~t-~-------~a~e~I~~l~~~~~~~~iGaGT--V-------------------   93 (232)
T 4e38_A           43 DNAEDIIPLGKVLAENGLPAAEITFRS-D-------AAVEAIRLLRQAQPEMLIGAGT--I-------------------   93 (232)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEEEC--C-------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------CHHHHHHHHHHhCCCCEEeECC--c-------------------
Confidence            456788999999999999999998642 1       34456666654 4443332211  0                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|++.|...  ..+                  .++++++++.|+.+..-           -.+++
T Consensus        94 ----lt~~~a~~Ai~AGA~fIvsP--~~~------------------~~vi~~~~~~gi~~ipG-----------v~Tpt  138 (232)
T 4e38_A           94 ----LNGEQALAAKEAGATFVVSP--GFN------------------PNTVRACQEIGIDIVPG-----------VNNPS  138 (232)
T ss_dssp             ----CSHHHHHHHHHHTCSEEECS--SCC------------------HHHHHHHHHHTCEEECE-----------ECSHH
T ss_pred             ----CCHHHHHHHHHcCCCEEEeC--CCC------------------HHHHHHHHHcCCCEEcC-----------CCCHH
Confidence                12358999999999988632  111                  25668889999886521           22455


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      ++.    .+.++|+|.|.+-=+ +.. +  =.++++.++..+|.+++-.    +=|....|.-..+.+|+.
T Consensus       139 Ei~----~A~~~Gad~vK~FPa-~~~-g--G~~~lkal~~p~p~ip~~p----tGGI~~~n~~~~l~aGa~  197 (232)
T 4e38_A          139 TVE----AALEMGLTTLKFFPA-EAS-G--GISMVKSLVGPYGDIRLMP----TGGITPSNIDNYLAIPQV  197 (232)
T ss_dssp             HHH----HHHHTTCCEEEECST-TTT-T--HHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTB
T ss_pred             HHH----HHHHcCCCEEEECcC-ccc-c--CHHHHHHHHHHhcCCCeee----EcCCCHHHHHHHHHCCCe
Confidence            544    346789998887221 111 0  1378899988888766553    456666899999999975

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=96.85  E-value=0.094  Score=50.28  Aligned_cols=199  Identities=17%  Similarity=0.141  Sum_probs=125.1

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      .+|-|+=      +...+.++..++++...+.|+..+.+-    |.|+|      ...+.++. .++++...+ +..   
T Consensus        30 ~IDhTlL------~p~~t~~~i~~lc~eA~~~~~~aVcV~----p~~v~------~a~~~L~~-s~v~v~tVi-gFP---   88 (239)
T 3ngj_A           30 YIDHTLL------KADATEEQIRKLCSEAAEYKFASVCVN----PTWVP------LCAELLKG-TGVKVCTVI-GFP---   88 (239)
T ss_dssp             TEEEEEC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------HHHHHHTT-SSCEEEEEE-STT---
T ss_pred             hcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEEC----HHHHH------HHHHHhCC-CCCeEEEEe-ccC---
Confidence            5677772      225688999999999999999999882    33343      22333332 345555433 110   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                           ++..+.+       .....++.|++.|++.|.+.+......     ....+..++.+..+++.+...-++|    
T Consensus        89 -----~G~~~~~-------~Kv~Ea~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~~~~lKV----  147 (239)
T 3ngj_A           89 -----LGATPSE-------VKAYETKVAVEQGAEEVDMVINIGMVK-----AKKYDDVEKDVKAVVDASGKALTKV----  147 (239)
T ss_dssp             -----TCCSCHH-------HHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHHTTSEEEE----
T ss_pred             -----CCCCchH-------HHHHHHHHHHHcCCCEEEEEeehHHhc-----cccHHHHHHHHHHHHHHhcCCceEE----
Confidence                 0111111       123477889999999999998765431     3456778888888888876432222    


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                      ...     .+..+.+.+.+.++.+.++|+|-|--.-  +.|..+++++..+-+.+..     ++.+-.-----. ...++
T Consensus       148 IlE-----t~~Lt~eei~~a~~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~-----~v~VKasGGIrt-~~da~  216 (239)
T 3ngj_A          148 IIE-----CCYLTNEEKVEVCKRCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGD-----KALVKAAGGIRT-FDDAM  216 (239)
T ss_dssp             ECC-----GGGSCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGG-----GSEEEEESSCCS-HHHHH
T ss_pred             EEe-----cCCCCHHHHHHHHHHHHHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCC-----CceEEEeCCCCC-HHHHH
Confidence            221     1245788899999999999999887652  2456788887776555433     333433222111 27888


Q ss_pred             HHHHcCCCEEeecc
Q 012949          367 ISLQMGISTVDCSV  380 (452)
Q Consensus       367 aAl~aGa~~VD~Sv  380 (452)
                      +-+++||++|-+|-
T Consensus       217 ~~i~aGA~riGtS~  230 (239)
T 3ngj_A          217 KMINNGASRIGASA  230 (239)
T ss_dssp             HHHHTTEEEEEESC
T ss_pred             HHHHhcccceeccc
Confidence            88899999886653

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=96.85  E-value=0.17  Score=48.26  Aligned_cols=195  Identities=12%  Similarity=0.099  Sum_probs=122.0

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cch
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNL  204 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~  204 (452)
                      +..+|-|+ -     +-..+.++..++++...+.|+..+.+-    |.|+       ...+.++..+++++...+  |.-
T Consensus        21 ~~~iDht~-L-----~p~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v-------~a~~~l~~~~~v~v~tvigFP~G   83 (234)
T 1n7k_A           21 ASRIDSTL-L-----SPRATEEDVRNLVREASDYGFRCAVLT----PVYT-------VKISGLAEKLGVKLCSVIGFPLG   83 (234)
T ss_dssp             HTTEEEEC-C-----CTTCCHHHHHHHHHHHHHHTCSEEEEC----HHHH-------HHHHHHHHHHTCCEEEEESTTTC
T ss_pred             HHHhceec-c-----CCCCCHHHHHHHHHHHHHhCCCEEEEc----hHHh-------eeehHhCCCCCceEEEEeCCCCC
Confidence            34566666 1     234589999999999999999999983    2111       112223221256666554  221


Q ss_pred             hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949          205 KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  284 (452)
Q Consensus       205 ~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V  284 (452)
                      .           .+.+       .....++.|++.|++.|.+.+.....         .++.++.+..+++.+.+.|..+
T Consensus        84 ~-----------~~~~-------~k~~e~~~Av~~GAdEID~vinig~~---------~~~v~~ei~~v~~a~~~~g~~l  136 (234)
T 1n7k_A           84 Q-----------APLE-------VKLVEAQTVLEAGATELDVVPHLSLG---------PEAVYREVSGIVKLAKSYGAVV  136 (234)
T ss_dssp             C-----------SCHH-------HHHHHHHHHHHHTCCEEEECCCGGGC---------HHHHHHHHHHHHHHHHHTTCEE
T ss_pred             C-----------CcHH-------HHHHHHHHHHHcCCCEEEEeccchHH---------HHHHHHHHHHHHHHHhhcCCeE
Confidence            1           1111       12247889999999999998865543         2277888888899999888866


Q ss_pred             EEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc---CCCcHHHHHHHHHHHHHhCCCccEEEEe--CCCcC
Q 012949          285 RGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYG  359 (452)
Q Consensus       285 ~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~---G~~~P~~v~~li~~l~~~~p~~~l~vH~--Hnd~G  359 (452)
                      -+-+.  .     ...+++.+...++.+.++|||.|--.-..   |..+++.+.-  +++++.++ ++|-.=.  + +  
T Consensus       137 KvIlE--t-----~~L~~e~i~~a~ria~eaGADfVKTsTG~~~~~gAt~~dv~l--~~m~~~v~-v~VKaaGGir-t--  203 (234)
T 1n7k_A          137 KVILE--A-----PLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRL--ASLAKPLG-MGVKASGGIR-S--  203 (234)
T ss_dssp             EEECC--G-----GGSCHHHHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHH--HHHHGGGT-CEEEEESSCC-S--
T ss_pred             EEEEe--c-----cCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCHHHHHH--HHHHHHHC-CCEEEecCCC-C--
Confidence            42222  1     23457889999999999999998875211   4456777554  11444443 2332211  2 2  


Q ss_pred             cHHHHHHHHHHcCCCEEeecc
Q 012949          360 QSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~Sv  380 (452)
                        ...+++-+++|+++|=+|.
T Consensus       204 --~~~al~~i~aGa~RiG~S~  222 (234)
T 1n7k_A          204 --GIDAVLAVGAGADIIGTSS  222 (234)
T ss_dssp             --HHHHHHHHHTTCSEEEETT
T ss_pred             --HHHHHHHHHcCccccchHH
Confidence              4667777799999886653

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=96.83  E-value=0.0073  Score=57.43  Aligned_cols=169  Identities=15%  Similarity=0.121  Sum_probs=102.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhc--cCCceeE--Eecchhhhhhhhhhhhhc
Q 012949          146 PTGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDL--EGARLPV--LTPNLKVILQRSILFQQC  217 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~--l~~~~~~~i~r~~~~~~~  217 (452)
                      +.....+-++.|.++|.+.+-+    |.|+     |.+.--.++++.+++.  ++..+-+  ++-+..            
T Consensus        15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fv-----pn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~------------   77 (228)
T 3ovp_A           15 DLANLGAECLRMLDSGADYLHLDVMDGHFV-----PNITFGHPVVESLRKQLGQDPFFDMHMMVSKPE------------   77 (228)
T ss_dssp             CGGGHHHHHHHHHHTTCSCEEEEEEBSSSS-----SCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGG------------
T ss_pred             CchhHHHHHHHHHHcCCCEEEEEecCCCcC-----cccccCHHHHHHHHHhhCCCCcEEEEEEeCCHH------------
Confidence            4444556678888999996655    4544     4443334577777765  4444443  121111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                                   +.++.++++|++.|.+-.-..                +.+.+.++.+|+.|.++.+.+.     |  
T Consensus        78 -------------~~i~~~~~aGad~itvH~Ea~----------------~~~~~~i~~i~~~G~k~gval~-----p--  121 (228)
T 3ovp_A           78 -------------QWVKPMAVAGANQYTFHLEAT----------------ENPGALIKDIRENGMKVGLAIK-----P--  121 (228)
T ss_dssp             -------------GGHHHHHHHTCSEEEEEGGGC----------------SCHHHHHHHHHHTTCEEEEEEC-----T--
T ss_pred             -------------HHHHHHHHcCCCEEEEccCCc----------------hhHHHHHHHHHHcCCCEEEEEc-----C--
Confidence                         267888999999999864221                2234677888999998764432     2  


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                       .++.+.+.++.    + .+|.|.+    +...|...-....+.|+.+++..+..+|++    |-|.-..|.-.++++||
T Consensus       122 -~t~~e~l~~~l----~-~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~t~~~~~~aGA  191 (228)
T 3ovp_A          122 -GTSVEYLAPWA----N-QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEV----DGGVGPDTVHKCAEAGA  191 (228)
T ss_dssp             -TSCGGGTGGGG----G-GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCSTTTHHHHHHHTC
T ss_pred             -CCCHHHHHHHh----c-cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEE----eCCcCHHHHHHHHHcCC
Confidence             12344443333    2 2676654    223333222334455888888876656666    55666788999999999


Q ss_pred             CEEe
Q 012949          374 STVD  377 (452)
Q Consensus       374 ~~VD  377 (452)
                      +.+=
T Consensus       192 d~~V  195 (228)
T 3ovp_A          192 NMIV  195 (228)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            9653

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.81  E-value=0.077  Score=48.51  Aligned_cols=155  Identities=18%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c-CCceeE-Eecchhhhhhhhhhhhhccchh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPV-LTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~-~~~l~~-l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .+.++-.++++.+.+.|++.||+.+.. +       +..+.++.+++. + +..+.+ .+.+                  
T Consensus        19 ~~~~~~~~~~~~~~~~G~~~iev~~~~-~-------~~~~~i~~ir~~~~~~~~ig~~~v~~------------------   72 (205)
T 1wa3_A           19 NSVEEAKEKALAVFEGGVHLIEITFTV-P-------DADTVIKELSFLKEKGAIIGAGTVTS------------------   72 (205)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHTHHHHHTTCEEEEESCCS------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCcEEEecccCC------------------
Confidence            467888999999999999999997632 1       234456666653 2 332222 1111                  


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              .+.++.+.++|+|.| +. +..+                  .++++++++.|+++...+           .+
T Consensus        73 --------~~~~~~a~~~Gad~i-v~-~~~~------------------~~~~~~~~~~g~~vi~g~-----------~t  113 (205)
T 1wa3_A           73 --------VEQCRKAVESGAEFI-VS-PHLD------------------EEISQFCKEKGVFYMPGV-----------MT  113 (205)
T ss_dssp             --------HHHHHHHHHHTCSEE-EC-SSCC------------------HHHHHHHHHHTCEEECEE-----------CS
T ss_pred             --------HHHHHHHHHcCCCEE-Ec-CCCC------------------HHHHHHHHHcCCcEECCc-----------CC
Confidence                    237788899999999 33 2211                  246678888999875211           13


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +..    ++.+.++|+|.|.+-..    .+. -.++++.+++.+|.+++..=.-=+    ..|....+++||+.|-
T Consensus       114 ~~e----~~~a~~~Gad~vk~~~~----~~~-g~~~~~~l~~~~~~~pvia~GGI~----~~~~~~~~~~Ga~~v~  176 (205)
T 1wa3_A          114 PTE----LVKAMKLGHTILKLFPG----EVV-GPQFVKAMKGPFPNVKFVPTGGVN----LDNVCEWFKAGVLAVG  176 (205)
T ss_dssp             HHH----HHHHHHTTCCEEEETTH----HHH-HHHHHHHHHTTCTTCEEEEBSSCC----TTTHHHHHHHTCSCEE
T ss_pred             HHH----HHHHHHcCCCEEEEcCc----ccc-CHHHHHHHHHhCCCCcEEEcCCCC----HHHHHHHHHCCCCEEE
Confidence            443    44567899998876321    112 235677777777666665543333    3578888999998654

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=96.81  E-value=0.064  Score=52.97  Aligned_cols=201  Identities=18%  Similarity=0.214  Sum_probs=111.3

Q ss_pred             CCccEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHH----Hhcc--
Q 012949          124 PRFVKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAV----RDLE--  193 (452)
Q Consensus       124 p~~V~I~D~TL---RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i----~~~~--  193 (452)
                      |.-.-|+.+|+   =||.+    .++.+..++.++.+.+.|.+.|++|.-+ .|. .+.+ +.++.++++    +.+.  
T Consensus        23 ~~iMgilNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPg-a~~v-~~~eE~~Rv~pvi~~l~~~   96 (294)
T 2y5s_A           23 PLVMGILNATPDSFSDGGR----FLARDDALRRAERMIAEGADLLDIGGESTRPG-APPV-PLDEELARVIPLVEALRPL   96 (294)
T ss_dssp             CEEEEEEECCC--------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTT-CCCC-CHHHHHHHHHHHHHHHGGG
T ss_pred             ceEEEEEeCCCCCCCCCCC----cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC-CCCC-CHHHHHHHHHHHHHHHhhC
Confidence            33345677776   45554    4678889999999999999999999743 232 1222 334444433    2332  


Q ss_pred             CCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHH
Q 012949          194 GARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAV  273 (452)
Q Consensus       194 ~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~  273 (452)
                      ++.+++=+..                          .+-+++|+++|++.|.=....+                  ..++
T Consensus        97 ~vpiSIDT~~--------------------------~~Va~aAl~aGa~iINdVsg~~------------------d~~m  132 (294)
T 2y5s_A           97 NVPLSIDTYK--------------------------PAVMRAALAAGADLINDIWGFR------------------QPGA  132 (294)
T ss_dssp             CSCEEEECCC--------------------------HHHHHHHHHHTCSEEEETTTTC------------------STTH
T ss_pred             CCeEEEECCC--------------------------HHHHHHHHHcCCCEEEECCCCC------------------chHH
Confidence            3333322211                          2367889999998776332211                  1245


Q ss_pred             HHHHHhCCCcEEEEEEeeecCCCCC-----CC-C-----HHHHHHHHHHHHHCCcC--EEEEcCCcCCC---cH-HHHHH
Q 012949          274 AHAAKVLSIPVRGYVSCVVGCPVEG-----AI-P-----PSKVAYVAKELHDMGCF--EISLGDTIGVG---TP-GTVVP  336 (452)
Q Consensus       274 v~~Ak~~G~~V~~~l~~~~g~p~~~-----r~-d-----~e~l~~~a~~l~~~Gad--~I~L~DT~G~~---~P-~~v~~  336 (452)
                      ++.+++.|..+.  ++..-|.|..-     .+ +     .+++.+.++.+.++|++  .|.| |. |++   ++ ++-.+
T Consensus       133 ~~~~a~~~~~vV--lmh~~G~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-G~Gf~kt~~~~n~~  208 (294)
T 2y5s_A          133 IDAVRDGNSGLC--AMHMLGEPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICV-DP-GFGFGKAVVDDNYA  208 (294)
T ss_dssp             HHHHSSSSCEEE--EECCCEETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEE-EC-CTTSSSCTTHHHHH
T ss_pred             HHHHHHhCCCEE--EECCCCCCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEE-eC-CCcccccchHHHHH
Confidence            577788888765  55543333321     11 1     45677788888899986  6666 54 333   34 66677


Q ss_pred             HHHHHHHh------CCCccEEEEeCC----------Cc-----CcHHHHHHHHHHcCCCEEee
Q 012949          337 MLEAVMAV------VPVEKLAVHLHD----------TY-----GQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       337 li~~l~~~------~p~~~l~vH~Hn----------d~-----GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +++.+..-      .++.|+-+=.-|          +.     ..-.|-+..|++.|+++|.+
T Consensus       209 ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~l~g~~~~~~R~~~t~a~~~~a~~~Ga~Ivrv  271 (294)
T 2y5s_A          209 LLAALPDTAPARPDGRAYPILAGMSRKSMLGAVIGGKPPLERVAASVAAALCAVERGAAIVRV  271 (294)
T ss_dssp             HHHTGGGGSCBCTTSSBCCBEEECTTCHHHHTTTTSCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHhccccCCCCCEEEEecccHHhhhhcCCCchhhhhHHHHHHHHHHHHcCCcEEEc
Confidence            77776542      223333332212          11     12345556677888887755

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=96.80  E-value=0.037  Score=54.76  Aligned_cols=199  Identities=15%  Similarity=0.162  Sum_probs=111.9

Q ss_pred             CccEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHH----Hhcc---
Q 012949          125 RFVKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAV----RDLE---  193 (452)
Q Consensus       125 ~~V~I~D~TL---RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i----~~~~---  193 (452)
                      .-+-|+++|+   -||.+    .++.+..++.++.+.+.|.+.|++|.-+ .|.. +.. +.++.++++    +.+.   
T Consensus        41 ~iMgilNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga-~~v-~~~eE~~RvvpvI~~l~~~~  114 (297)
T 1tx2_A           41 LIMGILNVTPDSFSDGGS----YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGF-AKV-SVEEEIKRVVPMIQAVSKEV  114 (297)
T ss_dssp             EEEEECCCCCCTTCSSCB----HHHHHHHHHHHHHHHHTTCSEEEEESCC----C-CCC-CHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEeCCCCccccCCc----cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCC-CCC-CHHHHHHHHHHHHHHHHhcC
Confidence            3355677776   44443    4678899999999999999999999643 2321 112 333333322    3222   


Q ss_pred             CCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHH
Q 012949          194 GARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAV  273 (452)
Q Consensus       194 ~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~  273 (452)
                      ++.+++=+..                          .+-+++|+++|++.|.=....+                 ...++
T Consensus       115 ~vpiSIDT~~--------------------------~~V~~aAl~aGa~iINdvsg~~-----------------~d~~m  151 (297)
T 1tx2_A          115 KLPISIDTYK--------------------------AEVAKQAIEAGAHIINDIWGAK-----------------AEPKI  151 (297)
T ss_dssp             CSCEEEECSC--------------------------HHHHHHHHHHTCCEEEETTTTS-----------------SCTHH
T ss_pred             CceEEEeCCC--------------------------HHHHHHHHHcCCCEEEECCCCC-----------------CCHHH
Confidence            4444432221                          2367888999999874322211                 01244


Q ss_pred             HHHHHhCCCcEEEEEEeeecCCCCCCCC-----HHHHHHHHHHHHHCCcC--EEEEcCCcCC---CcHHHHHHHHHHHHH
Q 012949          274 AHAAKVLSIPVRGYVSCVVGCPVEGAIP-----PSKVAYVAKELHDMGCF--EISLGDTIGV---GTPGTVVPMLEAVMA  343 (452)
Q Consensus       274 v~~Ak~~G~~V~~~l~~~~g~p~~~r~d-----~e~l~~~a~~l~~~Gad--~I~L~DT~G~---~~P~~v~~li~~l~~  343 (452)
                      ++.+++.|..+.  ++..-|.|. . .+     .+++.+.++.+.++|++  .|.| |. |+   -+.++-.++++.+..
T Consensus       152 ~~~aa~~g~~vV--lmh~~G~p~-y-~d~v~ev~~~l~~~i~~a~~~GI~~~~Iil-DP-g~Gfgk~~~~n~~ll~~l~~  225 (297)
T 1tx2_A          152 AEVAAHYDVPII--LMHNRDNMN-Y-RNLMADMIADLYDSIKIAKDAGVRDENIIL-DP-GIGFAKTPEQNLEAMRNLEQ  225 (297)
T ss_dssp             HHHHHHHTCCEE--EECCCSCCC-C-SSHHHHHHHHHHHHHHHHHHTTCCGGGEEE-EC-CTTSSCCHHHHHHHHHTGGG
T ss_pred             HHHHHHhCCcEE--EEeCCCCCC-c-chHHHHHHHHHHHHHHHHHHcCCChhcEEE-eC-CCCcCCCHHHHHHHHHHHHH
Confidence            566777887765  454333332 0 11     25677788888899987  6766 54 33   245666677776654


Q ss_pred             hC-CCccEEEEeC--------------CCcCcHHHHHHHHHHcCCCEEee
Q 012949          344 VV-PVEKLAVHLH--------------DTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       344 ~~-p~~~l~vH~H--------------nd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      -- .+.|+-+=..              +-..-.++.+..|+..||++|.+
T Consensus       226 l~~lg~Pvl~G~Srksfig~~~g~~~~~r~~~t~a~~~~a~~~ga~Ivrv  275 (297)
T 1tx2_A          226 LNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRV  275 (297)
T ss_dssp             GGGGCSCBEEECTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHhCCCCEEEEeccchhhhhhcCCCHHHhHHHHHHHHHHHHHCCCcEEEe
Confidence            21 1223333222              11222344666677888888876

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=96.80  E-value=0.017  Score=57.42  Aligned_cols=195  Identities=19%  Similarity=0.187  Sum_probs=130.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.+....+++...+.+-+.|--.+...-++.    ..+.+...++......+++.+.. .          .+      
T Consensus        24 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~----g~~~~~~~v~~~a~~~VPValHl-D----------Hg------   82 (305)
T 1rvg_A           24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYG----GRALTLMAVELAKEARVPVAVHL-D----------HG------   82 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHH----HHHHHHHHHHHHHHCSSCEEEEE-E----------EE------
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhC----CHHHHHHHHHHHHhCCCcEEEEC-C----------CC------
Confidence            478899999999999999998776553211111    11222223332111333332210 0          01      


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC------
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE------  297 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~------  297 (452)
                          ...+.+.+|+++|..-|.+=.|.          .+.||.++.-++++++|+..|+.|.+.|-..-|.++.      
T Consensus        83 ----~~~e~~~~ai~~GFtSVMiDgS~----------~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~  148 (305)
T 1rvg_A           83 ----SSYESVLRALRAGFTSVMIDKSH----------EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEK  148 (305)
T ss_dssp             ----CSHHHHHHHHHTTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------C
T ss_pred             ----CCHHHHHHHHHcCCCeeeeCCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccc
Confidence                02357889999999988764442          2568999999999999999999999988876544542      


Q ss_pred             --CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCc----HHHHHHHHHHHHHhCCCccEEEEeCC-------------
Q 012949          298 --GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHLHD-------------  356 (452)
Q Consensus       298 --~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~----P~~v~~li~~l~~~~p~~~l~vH~Hn-------------  356 (452)
                        -.++|+...+++++.   |+|.+.++  -+=|.-.    |.-=.++++.+++.+| +||.+|.=.             
T Consensus       149 ~~~yT~Peea~~Fv~~T---gvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~-vpLVlHGgSsv~~~~~~~~~~~  224 (305)
T 1rvg_A          149 DALLTNPEEARIFMERT---GADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRAS  224 (305)
T ss_dssp             CTTCCCHHHHHHHHHHH---CCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHT
T ss_pred             ccccCCHHHHHHHHHHH---CCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcC-CCEEEeCCCCCcHHHHHHHHhh
Confidence              147899888888664   89965554  3334333    3333577888888888 689999866             


Q ss_pred             ------CcCcHHHHHHHHHHcCCCEEe
Q 012949          357 ------TYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       357 ------d~GlA~ANaLaAl~aGa~~VD  377 (452)
                            ++|........|+..|+.-|+
T Consensus       225 gg~~~~~~G~p~e~i~~ai~~GV~KiN  251 (305)
T 1rvg_A          225 GGEIGEAAGIHPEDIKKAISLGIAKIN  251 (305)
T ss_dssp             TCCCCSCBCCCHHHHHHHHHTTEEEEE
T ss_pred             ccccccCCCCCHHHHHHHHHCCCeEEE
Confidence                  568888899999999987554

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=96.80  E-value=0.034  Score=55.59  Aligned_cols=195  Identities=14%  Similarity=0.166  Sum_probs=126.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cC-CceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EG-ARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      ..+.+....+++...+.+-+.|--.+...-++.+    .+.+...++.. .. ..+++.+.. .          .+    
T Consensus        25 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g----~~~~~~~v~~aa~~~~~VPValHl-D----------Hg----   85 (323)
T 2isw_A           25 VNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSD----MIYLKKLCEAALEKHPDIPICIHL-D----------HG----   85 (323)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTT----THHHHHHHHHHHHHCTTSCEEEEE-E----------EE----
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCC----HHHHHHHHHHHHHhcCCCcEEEEC-C----------CC----
Confidence            4788999999999999999987665432111111    12222333221 11 233332210 0          01    


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----  297 (452)
                            ...+.+..++++|..-|.+=.|.          .+.||.++.-++++++|+..|+.|.+.|-..-|.++.    
T Consensus        86 ------~~~e~i~~ai~~GFtSVMiDgS~----------~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~  149 (323)
T 2isw_A           86 ------DTLESVKMAIDLGFSSVMIDASH----------HPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNT  149 (323)
T ss_dssp             ------CSHHHHHHHHHTTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------
T ss_pred             ------CCHHHHHHHHHcCCCeEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccc
Confidence                  02357889999999988764442          2568999999999999999999999888876444532    


Q ss_pred             -CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCc----HH--HHHHHHHHHHHhCCCccEEEEeCC------------
Q 012949          298 -GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGT----PG--TVVPMLEAVMAVVPVEKLAVHLHD------------  356 (452)
Q Consensus       298 -~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~----P~--~v~~li~~l~~~~p~~~l~vH~Hn------------  356 (452)
                       ..++|+...+++++   .|+|.+.++  -.=|.-.    |.  -=.++++.+++.++ +||.+|+=.            
T Consensus       150 ~~yTdPeea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~-vpLVlHGgSsvp~~~~~~~~~  225 (323)
T 2isw_A          150 VQLTEPQDAKKFVEL---TGVDALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTG-IPLVMHGSSSVPKDVKDMINK  225 (323)
T ss_dssp             CCCCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHC-SCEEECSCCCCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHH---HCCCEEEEecCccccccCCCCCcccccCHHHHHHHHHHhC-CCeEEECCCCCCHHHHHHHHH
Confidence             24899998888875   489966554  3334322    33  11367788888775 689999944            


Q ss_pred             -------CcCcHHHHHHHHHHcCCCEEe
Q 012949          357 -------TYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       357 -------d~GlA~ANaLaAl~aGa~~VD  377 (452)
                             +.|........|+..|+.-|+
T Consensus       226 ~gg~~~~~~Gvp~e~i~~ai~~GV~KiN  253 (323)
T 2isw_A          226 YGGKMPDAVGVPIESIVHAIGEGVCKIN  253 (323)
T ss_dssp             TTCCCTTCBCCCHHHHHHHHHTTEEEEE
T ss_pred             hccccccCCCCCHHHHHHHHHCCCeEEE
Confidence                   889999999999999987654

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.80  E-value=0.018  Score=54.22  Aligned_cols=173  Identities=17%  Similarity=0.173  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ...-.+.++.+.+.|++.|++...-. .++|.+....+..+.+++..+..+.+  ++-+..                   
T Consensus        18 ~~~l~~~i~~~~~~Gad~i~l~i~Dg-~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~-------------------   77 (228)
T 1h1y_A           18 FANLAAEADRMVRLGADWLHMDIMDG-HFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPS-------------------   77 (228)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEEEEEBS-SSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGG-------------------
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEecC-CcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHH-------------------
Confidence            34446677888999999999973110 01232222235566676654433332  221111                   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                            +.++.++++|++.|.+....++.            .   +.+.++.+++.|+++...+.     | .  ++.+.
T Consensus        78 ------~~i~~~~~agad~v~vH~~~~~~------------~---~~~~~~~i~~~g~~igv~~~-----p-~--t~~e~  128 (228)
T 1h1y_A           78 ------DYVEPLAKAGASGFTFHIEVSRD------------N---WQELIQSIKAKGMRPGVSLR-----P-G--TPVEE  128 (228)
T ss_dssp             ------GGHHHHHHHTCSEEEEEGGGCTT------------T---HHHHHHHHHHTTCEEEEEEC-----T-T--SCGGG
T ss_pred             ------HHHHHHHHcCCCEEEECCCCccc------------H---HHHHHHHHHHcCCCEEEEEe-----C-C--CCHHH
Confidence                  26888899999999887654431            1   13556777888988763221     1 1  22333


Q ss_pred             HHHHHHHHHHC--CcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          305 VAYVAKELHDM--GCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~--Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +    +.+.+.  ++|.|.+ +|+     |.-.+....+.++.+++..+..++.+    +-|....|.-.++++|||.|=
T Consensus       129 ~----~~~~~~~~~~d~vl~-~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v----~GGI~~~ni~~~~~aGaD~vv  199 (228)
T 1h1y_A          129 V----FPLVEAENPVELVLV-MTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIV  199 (228)
T ss_dssp             G----HHHHHSSSCCSEEEE-ESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             H----HHHHhcCCCCCEEEE-EeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            3    334454  7898887 333     33345556667888888775556654    457777788888999998653

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=96.77  E-value=0.045  Score=54.09  Aligned_cols=206  Identities=17%  Similarity=0.219  Sum_probs=106.2

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCC--cccccCCHHHHHHHHHhcc--CCceeE
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPK--WVPQLADARDVMEAVRDLE--GARLPV  199 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~--~~p~~~D~e~v~~~i~~~~--~~~l~~  199 (452)
                      .-.-|+.+|+ |-..--+..++.+..++.++.+.+.|-+.|++|.-+ .|.  .++.-.+.+.+...++.+.  ++.+++
T Consensus        30 ~iMGIlNvTP-DSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSI  108 (294)
T 2dqw_A           30 RLLGVLNLTP-DSFSDGGRYLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSV  108 (294)
T ss_dssp             EEEEEEECCC--------------CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEE
T ss_pred             eEEEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEE
Confidence            3345677776 333332334677888999999999999999999733 232  1111111222333344433  333332


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      =+..                          .+-+++|+++|++.|.   ++|-.               ...++++.+++
T Consensus       109 DT~~--------------------------~~Va~aAl~aGa~iIN---dVsg~---------------~d~~m~~v~a~  144 (294)
T 2dqw_A          109 DTRK--------------------------PEVAEEALKLGAHLLN---DVTGL---------------RDERMVALAAR  144 (294)
T ss_dssp             ECSC--------------------------HHHHHHHHHHTCSEEE---CSSCS---------------CCHHHHHHHHH
T ss_pred             ECCC--------------------------HHHHHHHHHhCCCEEE---ECCCC---------------CChHHHHHHHH
Confidence            2221                          2367889999999654   22221               01244566778


Q ss_pred             CCCcEEEEEEeee-cCCCCC----CCC------HHHHHHHHHHHHHCCcCEEEEcCC-cCCCc-HHHHHHHHHHHHHhC-
Q 012949          280 LSIPVRGYVSCVV-GCPVEG----AIP------PSKVAYVAKELHDMGCFEISLGDT-IGVGT-PGTVVPMLEAVMAVV-  345 (452)
Q Consensus       280 ~G~~V~~~l~~~~-g~p~~~----r~d------~e~l~~~a~~l~~~Gad~I~L~DT-~G~~~-P~~v~~li~~l~~~~-  345 (452)
                      .|..+.  ++..- |.|..-    .++      .+++.+.++.+.++|++.|.| |. +|... .++-.++++.++.-. 
T Consensus       145 ~~~~vV--lmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~Iil-DPG~Gf~kt~~~n~~ll~~l~~~~~  221 (294)
T 2dqw_A          145 HGVAAV--VMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVL-DPGFGFGKLLEHNLALLRRLDEIVA  221 (294)
T ss_dssp             HTCEEE--EECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEE-ECCTTSSCCHHHHHHHHHTHHHHHT
T ss_pred             hCCCEE--EEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEE-cCCCCcccCHHHHHHHHHHHHHHhc
Confidence            887765  55532 333210    011      346777788889999987776 54 34443 667777877776531 


Q ss_pred             CCccEEEEeCC--------------C-cCcHHHHHHHHHHcCCCEEee
Q 012949          346 PVEKLAVHLHD--------------T-YGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       346 p~~~l~vH~Hn--------------d-~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ++.|+-+=.-|              + .....|-+..|++.|+++|.+
T Consensus       222 ~g~Pvl~G~Srksfig~l~g~p~~~~R~~~t~a~~~~a~~~Ga~IvRv  269 (294)
T 2dqw_A          222 LGHPVLVGLSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMKGVRLLRV  269 (294)
T ss_dssp             TSSCBEECCTTCHHHHHHHTCCSGGGCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCEEEEeccchhhhhhcCCCchhhhHHHHHHHHHHHHHcCCcEEEc
Confidence            33333331111              1 112235666777888877654

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=96.75  E-value=0.068  Score=52.89  Aligned_cols=137  Identities=12%  Similarity=0.047  Sum_probs=94.2

Q ss_pred             hHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH-HHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-SKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~-e~l~~~a  309 (452)
                      .++.|++.|++.|.+.+.. ++        .+..+.++.+.++++.|++.|+++.+.+- ..|.......++ +.+.+.+
T Consensus       113 ~ve~a~~~GAdaV~vlv~~~~d--------~~~~~~~~~i~~v~~~~~~~G~p~lv~~~-~~g~~v~~~~~~~~~v~~aa  183 (304)
T 1to3_A          113 NAQAVKRDGAKALKLLVLWRSD--------EDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAA  183 (304)
T ss_dssp             CHHHHHHTTCCEEEEEEEECTT--------SCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHH
T ss_pred             hHHHHHHcCCCEEEEEEEcCCC--------ccHHHHHHHHHHHHHHHHHcCCcEEEEEE-CCCCccccCCChhHHHHHHH
Confidence            7899999999988754421 21        12357789999999999999999875532 222222222456 8888889


Q ss_pred             HHHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          310 KELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.++|+|.|.+.=+ .|...++.+.++++......+. | |.+=.=.+.-..+.+.-.|+++|++.|-+
T Consensus       184 ~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~~-P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v  253 (304)
T 1to3_A          184 KELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINM-PWVILSSGVDEKLFPRAVRVAMEAGASGFLA  253 (304)
T ss_dssp             HHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCS-CEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCCC-CeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999999999887553 2334788888888876554332 4 33322225556678888999999976543

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=96.72  E-value=0.0038  Score=59.26  Aligned_cols=172  Identities=19%  Similarity=0.195  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ...-.+.++.+.+.|++.++++..-. .++|.+....++.+.+++..+..+-+  ++-+..                   
T Consensus        16 ~~~l~~~i~~~~~~Gad~ihldi~DG-~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~-------------------   75 (230)
T 1tqj_A           16 FSRLGEEIKAVDEAGADWIHVDVMDG-RFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPE-------------------   75 (230)
T ss_dssp             GGGHHHHHHHHHHTTCSEEEEEEEBS-SSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGG-------------------
T ss_pred             HhHHHHHHHHHHHcCCCEEEEEEEec-CCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHH-------------------
Confidence            44556778889999999999975311 13444443346777787765544432  221111                   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEec--CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFAS--ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s--~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                            +.++.++++|++.|.+..-  ..+                ...+.++.+++.|+.+...+.     |.   ++.
T Consensus        76 ------~~i~~~~~aGadgv~vh~e~~~~~----------------~~~~~~~~i~~~g~~~gv~~~-----p~---t~~  125 (230)
T 1tqj_A           76 ------KYVEDFAKAGADIISVHVEHNASP----------------HLHRTLCQIRELGKKAGAVLN-----PS---TPL  125 (230)
T ss_dssp             ------GTHHHHHHHTCSEEEEECSTTTCT----------------THHHHHHHHHHTTCEEEEEEC-----TT---CCG
T ss_pred             ------HHHHHHHHcCCCEEEECcccccch----------------hHHHHHHHHHHcCCcEEEEEe-----CC---CcH
Confidence                  2678899999999988764  333                123667888999998764331     21   122


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc----CCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          303 SKVAYVAKELHDMGCFEISLG----DTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~----DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +.+..+.     .++|.|.+.    -+.|.-.+....+.++.+++..+    ..+|.+    +.|.-..|+-...++||+
T Consensus       126 e~~~~~~-----~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v----~GGI~~~~~~~~~~aGad  196 (230)
T 1tqj_A          126 DFLEYVL-----PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGAN  196 (230)
T ss_dssp             GGGTTTG-----GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCC
T ss_pred             HHHHHHH-----hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEE----ECCcCHHHHHHHHHcCCC
Confidence            3332222     267866432    22233334455566666666552    346666    678878888889999998


Q ss_pred             EEe
Q 012949          375 TVD  377 (452)
Q Consensus       375 ~VD  377 (452)
                      .|=
T Consensus       197 ~vv  199 (230)
T 1tqj_A          197 AIV  199 (230)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=96.67  E-value=0.18  Score=47.49  Aligned_cols=180  Identities=15%  Similarity=0.138  Sum_probs=100.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc----cccc--------CCH---HHHHHHHHhccCCceeEEe-cchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW----VPQL--------ADA---RDVMEAVRDLEGARLPVLT-PNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~----~p~~--------~D~---e~v~~~i~~~~~~~l~~l~-~~~~~  206 (452)
                      .++.+.-.++++.|.+. ++.||++.|.+ |..    ++..        .+.   .++++.+++..+..+.++. .+.. 
T Consensus        15 ~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~-   92 (248)
T 1geq_A           15 DPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPI-   92 (248)
T ss_dssp             SSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHH-
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchh-
Confidence            34557889999999999 99999996533 221    0100        011   2334444433333333222 1100 


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |.           ....+.++.++++|++.|.+..-..                +...+++++++++|.++..
T Consensus        93 -------~~-----------~~~~~~~~~~~~~Gad~v~~~~~~~----------------~~~~~~~~~~~~~g~~~~~  138 (248)
T 1geq_A           93 -------YR-----------AGVRNFLAEAKASGVDGILVVDLPV----------------FHAKEFTEIAREEGIKTVF  138 (248)
T ss_dssp             -------HH-----------HCHHHHHHHHHHHTCCEEEETTCCG----------------GGHHHHHHHHHHHTCEEEE
T ss_pred             -------hh-----------cCHHHHHHHHHHCCCCEEEECCCCh----------------hhHHHHHHHHHHhCCCeEE
Confidence                   00           0113488999999999999863211                2234677888899988653


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCcCCC-----cHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGVG-----TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~G~~-----~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      .++     |   .++.+.+..+...     ++ .|++....|..     .+....++++.+++... .+|.+    .-|.
T Consensus       139 ~i~-----~---~t~~e~~~~~~~~-----~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~-~pi~~----~GGI  200 (248)
T 1geq_A          139 LAA-----P---NTPDERLKVIDDM-----TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICR-NKVAV----GFGV  200 (248)
T ss_dssp             EEC-----T---TCCHHHHHHHHHH-----CSSEEEEECCC-------CCCHHHHHHHHHHHHHCS-SCEEE----ESCC
T ss_pred             EEC-----C---CCHHHHHHHHHhc-----CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcC-CCEEE----Eeec
Confidence            221     1   1233333333322     45 66555544422     23456678888888653 34443    4566


Q ss_pred             HH-HHHHHHHHcCCCEEe
Q 012949          361 SL-PNILISLQMGISTVD  377 (452)
Q Consensus       361 A~-ANaLaAl~aGa~~VD  377 (452)
                      .. .|....+.+||+.|-
T Consensus       201 ~~~e~i~~~~~~Gad~vi  218 (248)
T 1geq_A          201 SKREHVVSLLKEGANGVV  218 (248)
T ss_dssp             CSHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHcCCCEEE
Confidence            66 777777799998664

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=96.64  E-value=0.19  Score=47.31  Aligned_cols=172  Identities=15%  Similarity=0.195  Sum_probs=95.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH--HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA--AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~--Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +.++.|.+.|++.|.+......      ...+.++.++++.+.++.  +++.|+.+  .+....+.+..--.+++.+.++
T Consensus        93 ~~i~~A~~lGa~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~a~~~gv~l--~lEn~~~~~~~~~~~~~~~~~l  164 (285)
T 1qtw_A           93 DEMQRCEQLGLSLLNFHPGSHL------MQISEEDCLARIAESINIALDKTQGVTA--VIENTAGQGSNLGFKFEHLAAI  164 (285)
T ss_dssp             HHHHHHHHTTCCEEEECCCBCT------TTSCHHHHHHHHHHHHHHHHHHCSSCEE--EEECCCCCTTBCCSSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHhccCCCEE--EEecCCCCCCcccCCHHHHHHH
Confidence            4778888999999977544211      112556666665555443  34456554  3543221111112367777777


Q ss_pred             HHHHHHCCcCEEEEcCC-----cC--CCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          309 AKELHDMGCFEISLGDT-----IG--VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT-----~G--~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ++.+.+..--.+++ ||     .|  ...|..+.+.++.+.+.++ +-...+|+||..+--          |.. -|- -
T Consensus       165 ~~~v~~~~~~g~~~-D~~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vH~~D~~~~~----------~~~-~~~-h  231 (285)
T 1qtw_A          165 IDGVEDKSRVGVCI-DTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTF----------GSR-VDR-H  231 (285)
T ss_dssp             HHHCSCGGGEEEEE-EHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CCC-E
T ss_pred             HHhhcCccceEEEE-EhHhHHHcCCCcCChHHHHHHHHHHHHhcCccceeEEEEecCCCcc----------cCC-ccc-c
Confidence            76551111113333 66     23  2345567778888877665 444689999876420          100 000 0


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC------CCChhhHHHHHHHHHHHhC
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLGVET------NVDLRKLMLAGDFINKHLG  431 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~Gi~t------~iDl~~L~~la~~v~~~~g  431 (452)
                      ..+|        .|..+.+.++..|+..|++-      -.+.+.+.+..+++.+...
T Consensus       232 ~~~G--------~G~id~~~~~~~L~~~gy~g~~~~lE~~~~~~~~~s~~~lr~~~~  280 (285)
T 1qtw_A          232 HSLG--------EGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQT  280 (285)
T ss_dssp             ECTT--------TSSSCSHHHHHHHTCGGGTTSEEEECCSCGGGHHHHHHHHHHHTT
T ss_pred             cCCC--------CCCCCHHHHHHHHhccCcCCCCEEEecCCCcchHHHHHHHHHHHh
Confidence            1122        47899999999998755421      0144566676777776653

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=96.62  E-value=0.087  Score=49.39  Aligned_cols=214  Identities=14%  Similarity=0.074  Sum_probs=112.3

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.+.++|++.||+.......+...-.+.+++.+.++. .++++..+.....        +........+    ...
T Consensus        22 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~~~--------~~~~~~~~~~----~~~   88 (272)
T 2q02_A           22 EAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYP--------FNQLTEEVVK----KTE   88 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETT--------TTSCCHHHHH----HHH
T ss_pred             HHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHH-cCCeEEechhhhc--------cCCcHHHHHH----HHH
Confidence            45566778899999999742110011011345566555554 3566644432111        1111111111    123


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHH-HHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDS-LVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~-l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++.|.+.|++.|.+......       ....+.. .+.+.++.++|++.|+++.  +... +.+...-.+++.+.+++
T Consensus        89 ~~i~~a~~lG~~~v~~~~g~~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~-~~~~~~~~~~~~~~~l~  158 (272)
T 2q02_A           89 GLLRDAQGVGARALVLCPLNDG-------TIVPPEVTVEAIKRLSDLFARYDIQGL--VEPL-GFRVSSLRSAVWAQQLI  158 (272)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSS-------BCCCHHHHHHHHHHHHHHHHTTTCEEE--ECCC-CSTTCSCCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccCCCc-------hhHHHHHHHHHHHHHHHHHHHcCCEEE--EEec-CCCcccccCHHHHHHHH
Confidence            5788899999999988543211       0334566 7888899999999998754  3321 11111224677777777


Q ss_pred             HHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 012949          310 KELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  387 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  387 (452)
                      +.+-  .--.+++ ||.=...  -.. .+.++.+.   .+--..+|+||..+-...       .+.  -|.-..-+|   
T Consensus       159 ~~v~--~~~g~~~-D~~h~~~~~~~~-~~~~~~l~---~~~i~~vH~~D~~~~~~~-------~~~--~~~~~~~~G---  219 (272)
T 2q02_A          159 REAG--SPFKVLL-DTFHHHLYEEAE-KEFASRID---ISAIGLVHLSGVEDTRPT-------EAL--ADEQRIMLS---  219 (272)
T ss_dssp             HHHT--CCCEEEE-EHHHHHHCTTHH-HHHHHHCC---GGGEEEEEECBCCCCSCG-------GGC--CGGGCBCCC---
T ss_pred             HHhC--cCeEEEE-EchHhhccCCCc-hhhhhhCC---HhHEEEEEeCCCcCCCCc-------hhc--cccccccCC---
Confidence            6653  2224444 7642222  011 13444332   233468899987532100       000  011111122   


Q ss_pred             CCCCCCC-cccHHHHHHHHHcCCCC
Q 012949          388 YAKGASG-NVATEDVVYMLSGLGVE  411 (452)
Q Consensus       388 ~a~graG-NaalE~vv~~L~~~Gi~  411 (452)
                           .| +.+...++..|+..|++
T Consensus       220 -----~G~~id~~~~~~~L~~~gy~  239 (272)
T 2q02_A          220 -----EKDVMQNYQQVQRLENMGYR  239 (272)
T ss_dssp             -----TTCSSCHHHHHHHHHHTTCC
T ss_pred             -----CCCcccHHHHHHHHHhcCCC
Confidence                 34 79999999999987765

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=96.62  E-value=0.083  Score=51.26  Aligned_cols=210  Identities=13%  Similarity=0.128  Sum_probs=128.2

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc-CCceeEEe--c
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE-GARLPVLT--P  202 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~-~~~l~~l~--~  202 (452)
                      .+|-|+=      +...+.++..++++...+.  |+..+.+    +|.|+|      ...+.++. -. .+++...+  |
T Consensus        15 ~IDhTlL------~p~~t~~~i~~lc~eA~~~~~~~~aVcV----~p~~v~------~a~~~L~~~g~~~v~v~tVigFP   78 (260)
T 1p1x_A           15 LMDLTTL------NDDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLKEQGTPEIRIATVTNFP   78 (260)
T ss_dssp             TEEEECC------CTTCCHHHHHHHHHHTEETTEECSEEEC----CGGGHH------HHHHHHHHTTCTTSEEEEEESTT
T ss_pred             HhchhcC------CCCCCHHHHHHHHHHHHhccCCceEEEE----CHHHHH------HHHHHhhhcCCCCceEEEEeCCC
Confidence            4566552      2245889999999999888  8988876    343443      23344442 12 45655444  2


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI  282 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~  282 (452)
                      .-.           .+.+       .....++.|++.|++.|.+.+.....     .....++..+.+..+.+.|.+.|.
T Consensus        79 ~G~-----------~~~~-------~Kv~E~~~Av~~GAdEIDmVinig~l-----~~g~~~~v~~ei~~v~~a~~~~g~  135 (260)
T 1p1x_A           79 HGN-----------DDID-------IALAETRAAIAYGADEVDVVFPYRAL-----MAGNEQVGFDLVKACKEACAAANV  135 (260)
T ss_dssp             TCC-----------SCHH-------HHHHHHHHHHHHTCSEEEEECCHHHH-----HTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCC-----------CcHH-------HHHHHHHHHHHcCCCEEEEeccHHhh-----hCCCHHHHHHHHHHHHHHhcccCC
Confidence            111           1110       12347889999999999999876543     123456788888888888887776


Q ss_pred             cEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhC-CCccEEEEeCCCcC
Q 012949          283 PVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYG  359 (452)
Q Consensus       283 ~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~-p~~~l~vH~Hnd~G  359 (452)
                      .+-+-|..      .-..+.+.+.+.++.+.++|||-|--.-  +.|.++|+.+.-|.+.+++.. +. ++.+..---.-
T Consensus       136 ~lKvIlEt------~~L~d~e~i~~a~~ia~eaGADfVKTSTGf~~~gAt~e~v~lm~~~I~~~~~g~-~v~VKaaGGIr  208 (260)
T 1p1x_A          136 LLKVIIET------GELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEK-TVGFKPAGGVR  208 (260)
T ss_dssp             EEEEECCH------HHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTT-TCEEECBSSCC
T ss_pred             eEEEEEec------ccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CceEEEeCCCC
Confidence            65432322      1234566688899999999999887642  224559999988877776542 22 35554433222


Q ss_pred             cHHHHHHHHHH-----cCCCEEeecccCCCC
Q 012949          360 QSLPNILISLQ-----MGISTVDCSVAGLGG  385 (452)
Q Consensus       360 lA~ANaLaAl~-----aGa~~VD~Sv~GlGe  385 (452)
                      . ...+++=++     .|.+|++....=+|-
T Consensus       209 t-~~~al~~i~aga~~lG~~w~~~~~~RiGt  238 (260)
T 1p1x_A          209 T-AEDAQKYLAIADELFGADWADARHYRFGA  238 (260)
T ss_dssp             S-HHHHHHHHHHHHHHHCTTSCSTTTBCEEE
T ss_pred             C-HHHHHHHHHhhhhhccccccccCceEeec
Confidence            1 333333333     466677766665554

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=96.60  E-value=0.078  Score=50.14  Aligned_cols=190  Identities=17%  Similarity=0.103  Sum_probs=118.1

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.++..++++...+.|+..+-+-    |.|++      ...+.++. .++++...+ +..        +...+.+   
T Consensus        15 ~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v~------~~~~~l~~-~~v~v~~vi-gFP--------~G~~~~~---   71 (220)
T 1ub3_A           15 TATLEEVAKAAEEALEYGFYGLCIP----PSYVA------WVRARYPH-APFRLVTVV-GFP--------LGYQEKE---   71 (220)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECC----GGGHH------HHHHHCTT-CSSEEEEEE-STT--------TCCSCHH---
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH------HHHHHhCC-CCceEEEEe-cCC--------CCCCchH---
Confidence            4589999999999999999999873    33332      12223322 234444333 111        0111111   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .....++.|++.|++.|.+.+.....     .....++.++.+..+++.+.+.+++|.  +.       ....+++
T Consensus        72 ----~k~~e~~~Ai~~GAdevd~vinig~~-----~~g~~~~v~~ei~~v~~a~~~~~lkvI--le-------t~~l~~e  133 (220)
T 1ub3_A           72 ----VKALEAALACARGADEVDMVLHLGRA-----KAGDLDYLEAEVRAVREAVPQAVLKVI--LE-------TGYFSPE  133 (220)
T ss_dssp             ----HHHHHHHHHHHTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHSTTSEEEEE--CC-------GGGSCHH
T ss_pred             ----HHHHHHHHHHHcCCCEEEecccchhh-----hCCCHHHHHHHHHHHHHHHcCCCceEE--Ee-------cCCCCHH
Confidence                12247889999999999998865432     123467788888888888766555543  11       1235688


Q ss_pred             HHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          304 KVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+...++.+.++|||.|--.=  +.|.++|+++..+.+.+...+     .+-.---.- -...+++=+++|+++|=+|.
T Consensus       134 ~i~~a~~ia~eaGADfVKTsTGf~~~gat~~dv~~m~~~vg~~v-----~VkaaGGir-t~~~al~~i~aGa~RiG~S~  206 (220)
T 1ub3_A          134 EIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRA-----QVKAAGGIR-DRETALRMLKAGASRLGTSS  206 (220)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHTTSS-----EEEEESSCC-SHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhhCCCC-----eEEEECCCC-CHHHHHHHHHCCCcccchhH
Confidence            999999999999999887642  236668988888766542222     222211111 22566777789999886663

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=96.58  E-value=0.039  Score=55.12  Aligned_cols=165  Identities=20%  Similarity=0.195  Sum_probs=83.3

Q ss_pred             CccEEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHH----Hhcc---
Q 012949          125 RFVKIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAV----RDLE---  193 (452)
Q Consensus       125 ~~V~I~D~TL---RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i----~~~~---  193 (452)
                      .-.-|+.+|+   =||.+    .++.+..++.++.+.+.|.+.|++|.-+. |.  +.+ +.++.++++    +.+.   
T Consensus        43 ~vMGIlNvTPDSFsdgg~----~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG--~~v-~~~eEl~Rv~pvI~~l~~~~  115 (318)
T 2vp8_A           43 LIMAIVNRTPDSFYDKGA----TFSDAAARDAVHRAVADGADVIDVGGVKAGPG--ERV-DVDTEITRLVPFIEWLRGAY  115 (318)
T ss_dssp             EEEEEEC------------------CHHHHHHHHHHHHTTCSEEEEC-------------CHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEEeCCCCcccCCCc----cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC--CCC-CHHHHHHHHHHHHHHHHhhC
Confidence            3345666766   56655    46778899999999999999999996432 32  222 333434333    3321   


Q ss_pred             -CCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHH
Q 012949          194 -GARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA  272 (452)
Q Consensus       194 -~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~  272 (452)
                       ++.+++=+..                          .+-+++|+++|++.|.=.....+                  .+
T Consensus       116 ~~vpISIDT~~--------------------------~~VaeaAl~aGa~iINDVsg~~d------------------~~  151 (318)
T 2vp8_A          116 PDQLISVDTWR--------------------------AQVAKAACAAGADLINDTWGGVD------------------PA  151 (318)
T ss_dssp             TTCEEEEECSC--------------------------HHHHHHHHHHTCCEEEETTSSSS------------------TT
T ss_pred             CCCeEEEeCCC--------------------------HHHHHHHHHhCCCEEEECCCCCc------------------hH
Confidence             4434332211                          23678899999996653322111                  24


Q ss_pred             HHHHHHhCCCcEEEEEEeeecC-CCCC--CCC------------HHHHHHHHHHHHHCCcC--EEEEcCC-cCCC-cHHH
Q 012949          273 VAHAAKVLSIPVRGYVSCVVGC-PVEG--AIP------------PSKVAYVAKELHDMGCF--EISLGDT-IGVG-TPGT  333 (452)
Q Consensus       273 ~v~~Ak~~G~~V~~~l~~~~g~-p~~~--r~d------------~e~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~  333 (452)
                      +++.+++.|..+.  ++..-|. |..-  +.+            .+++.+.++.+.++|++  .|.| |. +|.. +.++
T Consensus       152 m~~vaa~~g~~vV--lmh~~G~~p~tmq~~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~Iil-DPG~GF~Kt~~~  228 (318)
T 2vp8_A          152 MPEVAAEFGAGLV--CAHTGGALPRTRPFRVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLI-DPAHDFGKNTFH  228 (318)
T ss_dssp             HHHHHHHHTCEEE--EECC-------------CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ETTTTCCTTSHH
T ss_pred             HHHHHHHhCCCEE--EECCCCCCccccccccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEE-cCCCCcccCHHH
Confidence            4566777887765  5554333 3211  110            15666678888899986  6666 54 2322 3455


Q ss_pred             HHHHHHHHHH
Q 012949          334 VVPMLEAVMA  343 (452)
Q Consensus       334 v~~li~~l~~  343 (452)
                      -.++++.+..
T Consensus       229 nl~ll~~l~~  238 (318)
T 2vp8_A          229 GLLLLRHVAD  238 (318)
T ss_dssp             HHHHHHTHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666653

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=96.58  E-value=0.34  Score=45.93  Aligned_cols=245  Identities=9%  Similarity=-0.005  Sum_probs=124.6

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP  202 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~  202 (452)
                      |+-++-+...++++        .+   -.+.++.+.++|++.||+.....    +  .+.+++.+.++. .++++.++.+
T Consensus        24 m~mklg~~~~~~~~--------~~---~~~~l~~~~~~G~~~vEl~~~~~----~--~~~~~~~~~l~~-~gl~v~~~~~   85 (287)
T 3kws_A           24 LELKLSFQEGIAPG--------ES---LNEKLDFMEKLGVVGFEPGGGGL----A--GRVNEIKQALNG-RNIKVSAICA   85 (287)
T ss_dssp             CCCEEEEETTSSCC--------SS---HHHHHHHHHHTTCCEEECBSTTC----G--GGHHHHHHHHTT-SSCEECEEEC
T ss_pred             ceeeEEEEecccCC--------CC---HHHHHHHHHHcCCCEEEecCCch----H--HHHHHHHHHHHH-cCCeEEEEec
Confidence            34456666666654        13   35677778899999999976421    1  234455555543 3566655443


Q ss_pred             chhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhh-hcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          203 NLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKS-NINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       203 ~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      .....      +.......-+.......+.++.|.+.|++.|.+........... ......+...+.+.++.++|++.|
T Consensus        86 ~~~~~------l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~G  159 (287)
T 3kws_A           86 GFKGF------ILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHG  159 (287)
T ss_dssp             CCCSC------TTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCc------CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            21100      00000000000000123477888899999998754311100000 000123456677778889999999


Q ss_pred             CcEEEEEEeeecCCCCC--CCCHHHHHHHHHHHHHCCcCEEE-EcCCcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          282 IPVRGYVSCVVGCPVEG--AIPPSKVAYVAKELHDMGCFEIS-LGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~--r~d~e~l~~~a~~l~~~Gad~I~-L~DT~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      +.+.  +...  .+..+  -.+++.+.++++.+   +.+.+. .-|+.=... -....+.++.+.   + --..+|++|.
T Consensus       160 v~l~--lE~~--~~~~~~~~~~~~~~~~ll~~v---~~~~vg~~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHlkD~  228 (287)
T 3kws_A          160 TSVI--FEPL--NRKECFYLRQVADAASLCRDI---NNPGVRCMGDFWHMTWEETSDMGAFISGG---E-YLQHVHVASR  228 (287)
T ss_dssp             CCEE--ECCC--CTTTCSSCCCHHHHHHHHHHH---CCTTEEEEEEHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCT
T ss_pred             CEEE--EEec--CcccCcccCCHHHHHHHHHHc---CCCCeeEEeehHHHHhcCCCHHHHHHHhh---h-hEEEEEeCCC
Confidence            8764  3311  11111  23567777776655   333222 236532211 011223333332   2 2367999997


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCc--ccHHHHHHHHHcCCCCCC----C----C-hhhHHHHHHHH
Q 012949          358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGN--VATEDVVYMLSGLGVETN----V----D-LRKLMLAGDFI  426 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGN--aalE~vv~~L~~~Gi~t~----i----D-l~~L~~la~~v  426 (452)
                      .+                         .+  .+ +.|.  .+...++..|+..|++-.    +    | .+.+....+++
T Consensus       229 ~~-------------------------r~--~p-G~G~d~id~~~i~~~L~~~gy~g~i~lE~~~~~~~~~~~~~s~~~l  280 (287)
T 3kws_A          229 KR-------------------------RS--MP-GEDGDADNYINGFKGLKMIGYNNYVSFECGCQGDRNVVVPAAVKLL  280 (287)
T ss_dssp             TT-------------------------SC--ST-TTTGGGCCCHHHHHHHHHTTCCSEEEECCCCSSCHHHHHHHHHHHH
T ss_pred             CC-------------------------CC--CC-CCCCCCcCHHHHHHHHHHcCCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            51                         10  12 2689  999999999998765421    1    2 24555555666


Q ss_pred             HHHh
Q 012949          427 NKHL  430 (452)
Q Consensus       427 ~~~~  430 (452)
                      .+.+
T Consensus       281 ~~~~  284 (287)
T 3kws_A          281 REQW  284 (287)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=96.51  E-value=0.19  Score=47.45  Aligned_cols=209  Identities=11%  Similarity=-0.007  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      -.+.++.+.++|++.||+..+.       -.+.+++.+.+++ .++++.++. |... ......++.. .....+.....
T Consensus        25 ~~~~l~~~~~~G~~~vEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~-~~~~~~~~~~-~~~~r~~~~~~   94 (269)
T 3ngf_A           25 FLERFRLAAEAGFGGVEFLFPY-------DFDADVIARELKQ-HNLTQVLFNMPPGD-WAAGERGMAA-ISGREQEFRDN   94 (269)
T ss_dssp             HHHHHHHHHHTTCSEEECSCCT-------TSCHHHHHHHHHH-TTCEEEEEECCCSC-TTTTCCBCTT-CTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCCc-------cCCHHHHHHHHHH-cCCcEEEEecCCCc-cccCCCCcCC-CccHHHHHHHH
Confidence            3456777888999999997532       1355666666654 366665543 2111 0000000000 00000000011


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEEeeecC--CCCCCCCH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--PVEGAIPP  302 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--p~~~r~d~  302 (452)
                      ..+.++.|.+.|++.|.+... .+      .+.+.    +...+.+.++.++|++.|+.+.  +...-..  |...-.++
T Consensus        95 ~~~~i~~A~~lGa~~v~~~~g-~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~n~~~~~~~~~~~~  165 (269)
T 3ngf_A           95 VDIALHYALALDCRTLHAMSG-IT------EGLDRKACEETFIENFRYAADKLAPHGITVL--VEPLNTRNMPGYFIVHQ  165 (269)
T ss_dssp             HHHHHHHHHHTTCCEEECCBC-BC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCCH
T ss_pred             HHHHHHHHHHcCCCEEEEccC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeCCcccCccchhcCH
Confidence            234778888999999987654 21      12233    3455556677888999998754  3321000  01112366


Q ss_pred             HHHHHHHHHHHHCCcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          303 SKVAYVAKELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +.+.++++.+   +.+.+. .-|+.=...-.  .+....+++ +.+-...+|++|..|-                     
T Consensus       166 ~~~~~l~~~v---~~~~vg~~~D~~h~~~~g--~d~~~~l~~-~~~~i~~vHl~D~~~r---------------------  218 (269)
T 3ngf_A          166 LEAVGLVKRV---NRPNVAVQLDLYHAQIMD--GDLTRLIEK-MNGAFSHVQIASVPDR---------------------  218 (269)
T ss_dssp             HHHHHHHHHH---CCTTEEEEEEHHHHHHHT--CCHHHHHHH-TTTSEEEEEECCTTTC---------------------
T ss_pred             HHHHHHHHHh---CCCCCCeEEEhhhHHhhC--CCHHHHHHH-hhhhEEEEEEecCCCC---------------------
Confidence            7777776655   333222 23653211100  122333333 3333468999997531                     


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                          +  .+| .|..+...++..|+..|++
T Consensus       219 ----~--~~G-~G~id~~~~~~~L~~~gy~  241 (269)
T 3ngf_A          219 ----H--EPD-EGELNYPYLFSVLESVGYR  241 (269)
T ss_dssp             ----C--CTT-SSSBCHHHHHHHHHHTTCC
T ss_pred             ----C--CCC-CCccCHHHHHHHHHHcCCC
Confidence                1  122 6889999999999987775

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.51  E-value=0.02  Score=53.46  Aligned_cols=153  Identities=22%  Similarity=0.177  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      .++-+++++.|.+.|++.||++.-.        .+..+.++.+++ ++....+-+  .                      
T Consensus        24 ~~~~~~~~~~l~~gGv~~iel~~k~--------~~~~~~i~~~~~-~~~~~gag~--v----------------------   70 (207)
T 2yw3_A           24 GEDLLGLARVLEEEGVGALEITLRT--------EKGLEALKALRK-SGLLLGAGT--V----------------------   70 (207)
T ss_dssp             CCCHHHHHHHHHHTTCCEEEEECSS--------THHHHHHHHHTT-SSCEEEEES--C----------------------
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCC--------hHHHHHHHHHhC-CCCEEEeCe--E----------------------
Confidence            3456789999999999999998532        123455555655 443322211  0                      


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       ...+.++.|+++|++.|+..  -.+                  .++++.+++.|..+..      |     -.+++.+ 
T Consensus        71 -l~~d~~~~A~~~GAd~v~~~--~~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e~-  117 (207)
T 2yw3_A           71 -RSPKEAEAALEAGAAFLVSP--GLL------------------EEVAALAQARGVPYLP------G-----VLTPTEV-  117 (207)
T ss_dssp             -CSHHHHHHHHHHTCSEEEES--SCC------------------HHHHHHHHHHTCCEEE------E-----ECSHHHH-
T ss_pred             -eeHHHHHHHHHcCCCEEEcC--CCC------------------HHHHHHHHHhCCCEEe------c-----CCCHHHH-
Confidence             01248999999999998743  222                  2566778888887542      1     1234443 


Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                         ..+.++|+|.|.+-   . ..+..=.+.++.+++.+|.+++-.    .=|....|.-.-+.+|++.|
T Consensus       118 ---~~A~~~Gad~v~~f---p-a~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~n~~~~l~aGa~~v  176 (207)
T 2yw3_A          118 ---ERALALGLSALKFF---P-AEPFQGVRVLRAYAEVFPEVRFLP----TGGIKEEHLPHYAALPNLLA  176 (207)
T ss_dssp             ---HHHHHTTCCEEEET---T-TTTTTHHHHHHHHHHHCTTCEEEE----BSSCCGGGHHHHHTCSSBSC
T ss_pred             ---HHHHHCCCCEEEEe---c-CccccCHHHHHHHHhhCCCCcEEE----eCCCCHHHHHHHHhCCCcEE
Confidence               33456799998881   1 011101356788888887656543    23455678888999998844

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=96.50  E-value=0.055  Score=51.09  Aligned_cols=214  Identities=17%  Similarity=0.177  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCC-cccccCCH---HHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPK-WVPQLADA---RDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~-~~p~~~D~---e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .-.+.++.+.++|++.||+ +...|. |.+...+.   +++.+.+++ .++ .+++..|-.-+       +.. ..+..+
T Consensus        15 ~~~~~~~~~~~~G~~~vEl-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~h~~~~~~-------l~s-~~~~r~   84 (270)
T 3aam_A           15 GVAGAVEEATALGLTAFQI-FAKSPRSWRPRALSPAEVEAFRALREA-SGGLPAVIHASYLVN-------LGA-EGELWE   84 (270)
T ss_dssp             HHHHHHHHHHHHTCSCEEE-ESSCTTCCSCCCCCHHHHHHHHHHHHH-TTCCCEEEECCTTCC-------TTC-SSTHHH
T ss_pred             cHHHHHHHHHHcCCCEEEE-eCCCCCcCcCCCCCHHHHHHHHHHHHH-cCCceEEEecCcccC-------CCC-CHHHHH
Confidence            3456677788899999999 443332 22111122   222222222 344 44544442110       000 011100


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                      .......+.++.|.+.|++.|.+.....          +.+...+.+.++.++|+ +.|+.+.  |....+.+..-..++
T Consensus        85 ~~~~~~~~~i~~a~~lGa~~vv~h~g~~----------~~~~~~~~l~~l~~~a~~~~gv~l~--lEn~~~~~~~~~~~~  152 (270)
T 3aam_A           85 KSVASLADDLEKAALLGVEYVVVHPGSG----------RPERVKEGALKALRLAGVRSRPVLL--VENTAGGGEKVGARF  152 (270)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEECCCBS----------CHHHHHHHHHHHHHHHTCCSSSEEE--EECCCCCTTBSCCSH
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECCCCC----------CHHHHHHHHHHHHHhhcccCCCEEE--EecCCCCCCccCCCH
Confidence            0011123477888899999987654321          11667788888889998 8887654  443211111111378


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +.+.++++.+ .   -.+++ ||.     |.-......++++.+.+.++ +--..+|.||..+--          |.. .
T Consensus       153 ~~~~~l~~~v-~---vg~~l-D~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~  216 (270)
T 3aam_A          153 EELAWLVADT-P---LQVCL-DTCHAYAAGYDVAEDPLGVLDALDRAVGLERVPVVHLNDSVGGL----------GSR-V  216 (270)
T ss_dssp             HHHHHHHTTS-S---CEEEE-EHHHHHHHTCCTTTCHHHHHHHHHHHTCGGGCCEEECCEESSCT----------TCC-C
T ss_pred             HHHHHHHHhC-C---EEEEE-ehhhHHhccCCchhhHHHHHHHHHHhcCccceeEEEEecCCCcc----------ccC-c
Confidence            8888888766 2   23444 653     32111124556666655554 334689999976521          111 0


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      |-- ..+|        .|..+ +.++..|+..|+
T Consensus       217 d~h-~~~G--------~G~id-~~~~~~L~~~~y  240 (270)
T 3aam_A          217 DHH-AHLL--------QGKIG-EGLKRVFLDPRL  240 (270)
T ss_dssp             CCE-ECTT--------SSSST-THHHHHHTCGGG
T ss_pred             ccc-cCCC--------CCCcC-HHHHHHHhccCc
Confidence            100 1122        47899 999999987544

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=96.47  E-value=0.12  Score=51.48  Aligned_cols=204  Identities=11%  Similarity=0.116  Sum_probs=114.4

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCccc---ccCCHHHHHHH----HHhc---
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVP---QLADARDVMEA----VRDL---  192 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p---~~~D~e~v~~~----i~~~---  192 (452)
                      |.-+-|+.+|+ |-..-  ...+.+..++.++.+.+.|.+.|++|.-+ .|....   .+ +.++.+++    ++.+   
T Consensus        28 ~~vMGIlNvTp-DSFsd--~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V-~~~eE~~Rv~pvI~~l~~~  103 (314)
T 3tr9_A           28 PAVMGIINVSP-NSFYH--PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDSP-STQIELDRLLPVIDAIKKR  103 (314)
T ss_dssp             CEEEEEEECST-TCSBC--BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----CH-HHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeCCC-Cchhh--ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCCC-CHHHHHHHHHHHHHHHHhh
Confidence            44455777777 33332  35688999999999999999999999643 332110   11 12222222    2222   


Q ss_pred             cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHH
Q 012949          193 EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRA  272 (452)
Q Consensus       193 ~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~  272 (452)
                      .++.+++=+..                          .+-+++|+++|++.|.=.....                  ..+
T Consensus       104 ~~vpISIDT~~--------------------------~~Va~aAl~aGa~iINDVsg~~------------------~~~  139 (314)
T 3tr9_A          104 FPQLISVDTSR--------------------------PRVMREAVNTGADMINDQRALQ------------------LDD  139 (314)
T ss_dssp             CCSEEEEECSC--------------------------HHHHHHHHHHTCCEEEETTTTC------------------STT
T ss_pred             CCCeEEEeCCC--------------------------HHHHHHHHHcCCCEEEECCCCC------------------chH
Confidence            23333321111                          2367889999998765332211                  113


Q ss_pred             HHHHHHhCCCcEEEEEEeeecCCCCCCCC---------HHHHHHHHHHHHHCCcC--EEEEcCC-cC----CCcHHHHHH
Q 012949          273 VAHAAKVLSIPVRGYVSCVVGCPVEGAIP---------PSKVAYVAKELHDMGCF--EISLGDT-IG----VGTPGTVVP  336 (452)
Q Consensus       273 ~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d---------~e~l~~~a~~l~~~Gad--~I~L~DT-~G----~~~P~~v~~  336 (452)
                      +.+.+++.|..+.  ++..-|.|..-...         .+++.+.++.+.++|++  .|.| |. .|    .-++++-.+
T Consensus       140 m~~v~a~~g~~vV--lMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~Iil-DPG~G~~~F~Kt~~~n~~  216 (314)
T 3tr9_A          140 ALTTVSALKTPVC--LMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIII-DPGFGQGNYGKNVSENFY  216 (314)
T ss_dssp             HHHHHHHHTCCEE--EECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCCCSGGGCCCHHHHHH
T ss_pred             HHHHHHHhCCeEE--EECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEE-eCCCCchhhcCCHHHHHH
Confidence            4566677787765  56544443221111         34667777888999986  6666 64 34    235666777


Q ss_pred             HHHHHHHh-CCCccEEE-E-------------eCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          337 MLEAVMAV-VPVEKLAV-H-------------LHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       337 li~~l~~~-~p~~~l~v-H-------------~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +++.+..- ..+.|+-+ .             ..+-.+-.+|-+..|++.||++|-+
T Consensus       217 lL~~l~~l~~lg~PvL~G~SRKsfig~~~~~~~~~R~~~t~a~~~~a~~~Ga~IvRv  273 (314)
T 3tr9_A          217 LLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGSIAADVLAVYHGASIIRT  273 (314)
T ss_dssp             HHHTTHHHHTTSSCBEECCTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHhcCCCCEEEEechhhhhhhhcCCChHHhHHHHHHHHHHHHHcCCcEEEe
Confidence            77776442 11223222 1             1223333455567788899997744

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=96.46  E-value=0.079  Score=50.55  Aligned_cols=198  Identities=18%  Similarity=0.180  Sum_probs=123.3

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      .+|-|+      .+...+.++..++++...+.|+..+.+    +|.|+|.      .. .++. .++++...+ +..   
T Consensus        16 ~IDhTl------L~p~~t~~~i~~lc~eA~~~~~~aVcV----~p~~v~~------a~-~l~~-~~v~v~tVi-gFP---   73 (231)
T 3ndo_A           16 LVDHTL------LKPEATPSDVTALVDEAADLGVFAVCV----SPPLVSV------AA-GVAP-SGLAIAAVA-GFP---   73 (231)
T ss_dssp             TEEEEC------CCTTCCHHHHHHHHHHHHHHTCSEEEE----CGGGHHH------HH-HHCC-TTCEEEEEE-STT---
T ss_pred             hcCccc------CCCCCCHHHHHHHHHHHHHhCCcEEEE----CHHHHHH------HH-HhcC-CCCeEEEEe-cCC---
Confidence            466666      123468899999999999999999988    3334431      12 2321 344544433 111   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                           ++..+.+       .....++.|++.|+++|.+.+.....     .....++..+.+..+.+.+.  |..+-  +
T Consensus        74 -----~G~~~~~-------~K~~E~~~Ai~~GAdEIDmVinig~l-----k~g~~~~v~~ei~~v~~a~~--~~~lK--v  132 (231)
T 3ndo_A           74 -----SGKHVPG-------IKATEAELAVAAGATEIDMVIDVGAA-----LAGDLDAVSADITAVRKAVR--AATLK--V  132 (231)
T ss_dssp             -----TCCSCHH-------HHHHHHHHHHHTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEE--E
T ss_pred             -----CCCCcHH-------HHHHHHHHHHHcCCCEEEEEeehHhh-----hcccHHHHHHHHHHHHHHcc--CCceE--E
Confidence                 1111111       12347888999999999999875543     12356777888877777775  44332  2


Q ss_pred             EeeecCCCCCCC----CHHHHHHHHHHHHHCCcCEEEEcC--C-cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          289 SCVVGCPVEGAI----PPSKVAYVAKELHDMGCFEISLGD--T-IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       289 ~~~~g~p~~~r~----d~e~l~~~a~~l~~~Gad~I~L~D--T-~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ...     .+..    +++.+.+.++.+.++|+|-|--.-  + .|..++++++-+-+.+..     ++.+..----.. 
T Consensus       133 IiE-----t~~L~~~~t~eei~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~~-----~v~VKaaGGIrt-  201 (231)
T 3ndo_A          133 IVE-----SAALLEFSGEPLLADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVGE-----RLGVKASGGIRT-  201 (231)
T ss_dssp             ECC-----HHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHTT-----TSEEEEESSCCS-
T ss_pred             EEE-----CcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhCC-----CceEEEeCCCCC-
Confidence            221     1234    788999999999999999887653  2 466788888776555432     344433221111 


Q ss_pred             HHHHHHHHHcCCCEEeecc
Q 012949          362 LPNILISLQMGISTVDCSV  380 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ...+++=+++||+++-+|.
T Consensus       202 ~~~a~~~i~aGa~RiGtS~  220 (231)
T 3ndo_A          202 AEQAAAMLDAGATRLGLSG  220 (231)
T ss_dssp             HHHHHHHHHTTCSEEEESS
T ss_pred             HHHHHHHHHhcchhcccch
Confidence            2677888899999987764

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=96.45  E-value=0.075  Score=52.27  Aligned_cols=193  Identities=13%  Similarity=0.139  Sum_probs=124.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.+....+++...+.+-+.|--.++..-++.    ..+.+...++.. ....+++.+.. .          .+     
T Consensus        25 v~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~----g~~~~~~~v~~~a~~~~VPValHl-D----------Hg-----   84 (286)
T 1gvf_A           25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHL-D----------HH-----   84 (286)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEE-E----------EE-----
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhc----CHHHHHHHHHHHHHhCCCcEEEEc-C----------CC-----
Confidence            478899999999999999997766554322222    223333333321 12233332210 0          01     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-----  297 (452)
                           ...+.+..|+++|..-|.+=.|.          .+.||.++.-++++++|+..|+.|.+.|-..-|.++.     
T Consensus        85 -----~~~e~i~~ai~~GFtSVMiDgS~----------lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~  149 (286)
T 1gvf_A           85 -----ESLDDIRRKVHAGVRSAMIDGSH----------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA  149 (286)
T ss_dssp             -----CCHHHHHHHHHTTCCEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC----------
T ss_pred             -----CCHHHHHHHHHcCCCeEEECCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCccccc
Confidence                 02358889999999988764442          2468999999999999999999999888875443432     


Q ss_pred             ---CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          298 ---GAIPPSKVAYVAKELHDMGCFEISLG--DTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       298 ---~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                         -.++|+...+++++   .|+|.+.++  -.=|.  ..|.-=.++++.+++.++ +||.+|+  --|..-.....|+.
T Consensus       150 ~~~~~T~Peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vpLVlHG--gSG~~~e~i~~ai~  223 (286)
T 1gvf_A          150 ESAFLTDPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIE  223 (286)
T ss_dssp             -CCSSCCHHHHHHHHHH---HCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCC-SCEEECC--CTTCCHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHH---HCCCEEEeecCccccCcCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHH
Confidence               23789988888865   489965553  22221  123333567788888876 4788776  45788889999999


Q ss_pred             cCCCEEe
Q 012949          371 MGISTVD  377 (452)
Q Consensus       371 aGa~~VD  377 (452)
                      .|+.-|+
T Consensus       224 ~Gv~KiN  230 (286)
T 1gvf_A          224 LGVTKVN  230 (286)
T ss_dssp             TTEEEEE
T ss_pred             CCCeEEE
Confidence            9987554

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.38  E-value=0.33  Score=47.96  Aligned_cols=235  Identities=14%  Similarity=0.136  Sum_probs=125.2

Q ss_pred             EEeCC----ccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH-HHHhc------cCCce
Q 012949          129 IVEVG----PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME-AVRDL------EGARL  197 (452)
Q Consensus       129 I~D~T----LRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~-~i~~~------~~~~l  197 (452)
                      .+.+|    ++||.+.    .+.+..++.++.+.+.|-+.|++|....+      -+.++.++ .++.+      .++.+
T Consensus        18 riNvTg~~sf~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIg~g~~~------v~~~eem~rvv~~i~~~~~~~~vpi   87 (300)
T 3k13_A           18 RCNVAGSRKFLRLVNE----KKYDEALSIARQQVEDGALVIDVNMDDGL------LDARTEMTTFLNLIMSEPEIARVPV   87 (300)
T ss_dssp             EEETTTCHHHHHHHHT----TCHHHHHHHHHHHHHTTCSEEEEECCCTT------SCHHHHHHHHHHHHHTCHHHHTSCE
T ss_pred             eccCCCCHHHHHHHhc----CCHHHHHHHHHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHhhhcCCCeE
Confidence            34677    6777774    57899999999999999999999974322      23333333 33322      22333


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHH--cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIA--AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~--~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      +  +...+                        .+-+++|++  .|.+.|.=. +..+          .+   +++.++++
T Consensus        88 s--IDT~~------------------------~~V~eaaL~~~~Ga~iINdI-s~~~----------~d---~~~~~~~~  127 (300)
T 3k13_A           88 M--IDSSK------------------------WEVIEAGLKCLQGKSIVNSI-SLKE----------GE---EVFLEHAR  127 (300)
T ss_dssp             E--EECSC------------------------HHHHHHHHHHCSSCCEEEEE-CSTT----------CH---HHHHHHHH
T ss_pred             E--EeCCC------------------------HHHHHHHHHhcCCCCEEEeC-Cccc----------CC---hhHHHHHH
Confidence            2  22111                        236788888  688766432 2211          01   23346667


Q ss_pred             HHHhCCCcEEEEEEee--ecCCCCCCCCHH----HHHHHHHHH-HHCCc--CEEEEcCC----cCCCcHH------HHHH
Q 012949          276 AAKVLSIPVRGYVSCV--VGCPVEGAIPPS----KVAYVAKEL-HDMGC--FEISLGDT----IGVGTPG------TVVP  336 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~--~g~p~~~r~d~e----~l~~~a~~l-~~~Ga--d~I~L~DT----~G~~~P~------~v~~  336 (452)
                      .+++.|..|.  +++.  -|.|    .+.+    ...++.+.+ .++|+  +.|.| |.    +|....+      ++-+
T Consensus       128 l~a~~ga~vV--~mh~d~~G~p----~t~~~~~~i~~r~~~~~~~~~Gi~~~~Iil-DPgig~~gk~~~~~~~~~~~~l~  200 (300)
T 3k13_A          128 IIKQYGAATV--VMAFDEKGQA----DTAARKIEVCERAYRLLVDKVGFNPHDIIF-DPNVLAVATGIEEHNNYAVDFIE  200 (300)
T ss_dssp             HHHHHTCEEE--EESEETTEEC----CSHHHHHHHHHHHHHHHHHHTCCCGGGEEE-ECCCCCCSSSCGGGTTHHHHHHH
T ss_pred             HHHHhCCeEE--EEeeCCCCCC----CCHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCCCccCCChHHhhHHHHHHHH
Confidence            7888898765  4432  1222    2233    233444554 78898  45665 42    2332222      3444


Q ss_pred             HHHHHHHhCCCccEEEEeCC-CcCcH----------HHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCcccHHHHHH
Q 012949          337 MLEAVMAVVPVEKLAVHLHD-TYGQS----------LPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGNVATEDVVY  403 (452)
Q Consensus       337 li~~l~~~~p~~~l~vH~Hn-d~GlA----------~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGNaalE~vv~  403 (452)
                      -++.+++.+|+.++-+=..| .+|+-          -+-...|+++|.+  +||.+=..+         -...+-|+.-.
T Consensus       201 ~l~~lk~~lPg~pvl~G~SnkSfglp~~~~~R~~~n~~fl~~ai~~Gld~~Ivn~~~~~~---------~~~i~~~~~~~  271 (300)
T 3k13_A          201 ATGWIRKNLPGAHVSGGVSNLSFSFRGNNYIREAMHAVFLYHAIQQGMDMGIVNPGTSVL---------YSDIPADTLEK  271 (300)
T ss_dssp             HHHHHHHHSTTCEECCBGGGGGGGGTTCHHHHHHHHHHHHHHHHHTTCCEEEECCC-CCC---------GGGSCHHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEECcccccCCCCcchhHHHHHHHHHHHHHcCCCEEecCcchhhH---------HhhcCHHHHHH
Confidence            45566667877666554444 25552          1234567899987  555554432         12344443222


Q ss_pred             HHHc-CCCCCCCChhhHHHHHHHHHHHh
Q 012949          404 MLSG-LGVETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       404 ~L~~-~Gi~t~iDl~~L~~la~~v~~~~  430 (452)
                      .... ++... =..+.|.++++.++...
T Consensus       272 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~  298 (300)
T 3k13_A          272 IEDVVLNRRP-DAAERLIELAEALKETM  298 (300)
T ss_dssp             HHHHHTTCST-THHHHHHHHHHHHC---
T ss_pred             HHHHHhCCCc-chHHHHHHHHHHHhhcc
Confidence            2222 33321 23678888887776544

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=96.36  E-value=0.058  Score=52.40  Aligned_cols=227  Identities=15%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcccccC---CHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLA---DARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~---D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+.+.+.++|++.||+.......+.|.-.   +.+++.+.+++ .++++.++.......  +...+.....+.-+.....
T Consensus        39 ~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gl~i~~~~~~~~~~--~~~~l~~~d~~~r~~~~~~  115 (316)
T 3qxb_A           39 LAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRK-AGLTIESTFGGLASY--TYNHFLAPTLELQSLGYQH  115 (316)
T ss_dssp             HHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHH--TSCBTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHH-cCCeEEEeecccccc--ccccCCCCCHHHHHHHHHH
Confidence            45677789999999997642111112100   12233333332 466665543221000  0000111111100000111


Q ss_pred             cHHhHHHHHHcCCCEEEEEecC-C-hHHH-hhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASA-S-EAFS-KSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~-S-d~~~-~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~  304 (452)
                      ..+.++.|.+.|++.|.+.... + ..+. ........+...+.+.++.++|++.|+. +.  +...-.. .....+++.
T Consensus       116 ~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~--lE~~~~~-~~~~~t~~~  192 (316)
T 3qxb_A          116 LKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLY--VEPVPLA-TEFPSSAAD  192 (316)
T ss_dssp             HHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--ECCCSCT-TBSSCSHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEE--EEecCCc-cccCCCHHH
Confidence            2347788889999998764432 1 0000 0000011345667777888999999987 54  3321000 012246788


Q ss_pred             HHHHHHHHHHCCcCEEE-EcCCcCCCc------HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          305 VAYVAKELHDMGCFEIS-LGDTIGVGT------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~-L~DT~G~~~------P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.++++.+.+.+.+.+. .-||.=...      -....+.++.+..+    -..+|++|..+.            .+. +
T Consensus       193 ~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~----i~~vHlkD~~~~------------~d~-h  255 (316)
T 3qxb_A          193 AARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPW----IAAYHIQQTDGQ------------LDR-H  255 (316)
T ss_dssp             HHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGG----EEEEEECBCCSS------------SCC-C
T ss_pred             HHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhh----heEEeeecCCCC------------cCc-c
Confidence            88888877544444332 237632221      01233344444332    357999997652            010 0


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..+         + +.|..+.+.++..|+..|++
T Consensus       256 ~~~---------~-G~G~id~~~i~~~L~~~gy~  279 (316)
T 3qxb_A          256 WSF---------T-QPGVVTPQRLQDFWDKYALT  279 (316)
T ss_dssp             BCT---------T-SCSSCCHHHHHHHHHHTTCS
T ss_pred             CCC---------C-CCceECHHHHHHHHHHcCCC
Confidence            011         1 24789999999999986654

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=96.35  E-value=0.28  Score=47.23  Aligned_cols=224  Identities=14%  Similarity=0.149  Sum_probs=111.8

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCC-cc-ccc--CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhcc-chhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPK-WV-PQL--ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCH-ASVIS  223 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~-~~-p~~--~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~-~~~i~  223 (452)
                      -.+.++.+.++|++.||+. ...|. |. +.+  .+.+++.+.+++ .++ .+.+..|-..+       +.... ...-+
T Consensus        20 ~~~~l~~~~~~G~~~vEl~-~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~h~~~~~n-------l~s~d~~~~r~   90 (303)
T 3aal_A           20 LLAASEEAASYGANTFMIY-TGAPQNTKRKSIEELNIEAGRQHMQA-HGIEEIVVHAPYIIN-------IGNTTNLDTFS   90 (303)
T ss_dssp             HHHHHHHHHHTTCSEEEEE-SSCTTCCCCCCSGGGCHHHHHHHHHH-TTCCEEEEECCTTCC-------TTCSSCHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEc-CCCCCccCCCCCCHHHHHHHHHHHHH-cCCceEEEecccccc-------CCCCCcHHHHH
Confidence            3566777788999999993 22222 11 111  244555555544 244 34444332100       00000 00000


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                      .......+.++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+....|...|....+.+..-..+++
T Consensus        91 ~~~~~~~~~i~~A~~lGa~~vv~h~g~~-------~~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~t~~  163 (303)
T 3aal_A           91 LGVDFLRAEIERTEAIGAKQLVLHPGAH-------VGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFE  163 (303)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEECCEEC-------TTSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEECSSHH
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccCCCHH
Confidence            0011123477888899999987754321       122567777777776665433222244445532111111113677


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+.++++.+....--.+++ ||.     |.-....+.++++.+.+.++ +--..+|.||..+--          |.. .|
T Consensus       164 ~~~~li~~v~~~~~vg~~l-D~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~d  231 (303)
T 3aal_A          164 ELAYIIDGVAYNDKLSVCF-DTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPR----------GSR-KD  231 (303)
T ss_dssp             HHHHHHHHCTTGGGEEEEE-EHHHHHHHTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CC
T ss_pred             HHHHHHHhcCCCCCEEEEE-EccCHhhhCCChhhhHHHHHHHHHHhcCcccEEEEEeeCCCCcC----------CCC-Cc
Confidence            7777776542101113344 763     32111245666666655554 434689999976521          110 01


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      - -..+|        .|..+.+.++..|+..|+
T Consensus       232 ~-h~~~G--------~G~id~~~~~~~L~~~gy  255 (303)
T 3aal_A          232 R-HENIG--------FGHIGFAALNYIVHHPQL  255 (303)
T ss_dssp             C-EECTT--------SSSSCHHHHHHHHTCTTC
T ss_pred             C-CCCCC--------CCCCCHHHHHHHHhCcCc
Confidence            0 01122        478999999999997554

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=96.34  E-value=0.012  Score=56.19  Aligned_cols=167  Identities=13%  Similarity=0.081  Sum_probs=99.1

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+-++.+ +.|++.+.+...- -.|+|.+.--..+++.+++.++..+-+.  +-+..                       
T Consensus        16 ~~~i~~~-~~gad~lHvDvmD-G~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~-----------------------   70 (231)
T 3ctl_A           16 KEQIEFI-DSHADYFHIDIMD-GHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQ-----------------------   70 (231)
T ss_dssp             HHHHHHH-HTTCSCEEEEEEC-SSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGG-----------------------
T ss_pred             HHHHHHH-HcCCCEEEEEEEe-CccCccchhcHHHHHHHHhccCCcEEEEEEecCHH-----------------------
Confidence            4455667 8999987665211 1133444333457788887654444332  11111                       


Q ss_pred             cHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                        +.++.++++|++.|.+..-+ ++                .+.+.++.+|++|.++.+.+.     |.   ++.+.+.+
T Consensus        71 --~~i~~~~~aGAd~itvh~Ea~~~----------------~~~~~i~~i~~~G~k~gv~ln-----p~---tp~~~~~~  124 (231)
T 3ctl_A           71 --DYIAQLARAGADFITLHPETING----------------QAFRLIDEIRRHDMKVGLILN-----PE---TPVEAMKY  124 (231)
T ss_dssp             --GTHHHHHHHTCSEEEECGGGCTT----------------THHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTT
T ss_pred             --HHHHHHHHcCCCEEEECcccCCc----------------cHHHHHHHHHHcCCeEEEEEE-----CC---CcHHHHHH
Confidence              25788999999999876432 22                234678899999999875442     22   23344443


Q ss_pred             HHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          308 VAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +..     ++|.|.+    +-..|......+.+.|+.+++..+    ..+|++    |-|.-..|+-.++++||+.+=
T Consensus       125 ~l~-----~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~~~~~~~~~~~I~V----dGGI~~~~~~~~~~aGAd~~V  193 (231)
T 3ctl_A          125 YIH-----KADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEV----DGSCNQATYEKLMAAGADVFI  193 (231)
T ss_dssp             TGG-----GCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESCCSTTTHHHHHHHTCCEEE
T ss_pred             HHh-----cCCEEEEeeeccCcCCccccHHHHHHHHHHHHHHhccCCCceEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            332     5787754    122243334455555666666542    345666    778888899999999999653

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.32  E-value=0.11  Score=47.58  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=95.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc-CCceeE--Eecchhhhhhhhhhhhhccchh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE-GARLPV--LTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~--l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .+.++-+++++.|.+ |++.||+|.+.+-      .+..++++.+++.. +..+-+  .+-+.             +   
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~~~------~~g~~~i~~l~~~~~~~~i~~~l~~~di-------------~---   66 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPLIK------AEGLSVITAVKKAHPDKIVFADMKTMDA-------------G---   66 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHHHH------HHCTHHHHHHHHHSTTSEEEEEEEECSC-------------H---
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHHHH------hhCHHHHHHHHHhCCCCeEEEEEEecCc-------------c---
Confidence            577889999999998 9999999864210      11123566666542 433321  11110             0   


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              ...++.+.++|++.|.+.....+               +.+.++++.+++.|..+.  ++.      .+..+
T Consensus        67 --------~~~~~~a~~~Gad~v~vh~~~~~---------------~~~~~~~~~~~~~g~~~g--v~~------~s~~~  115 (207)
T 3ajx_A           67 --------ELEADIAFKAGADLVTVLGSADD---------------STIAGAVKAAQAHNKGVV--VDL------IGIED  115 (207)
T ss_dssp             --------HHHHHHHHHTTCSEEEEETTSCH---------------HHHHHHHHHHHHHTCEEE--EEC------TTCSS
T ss_pred             --------HHHHHHHHhCCCCEEEEeccCCh---------------HHHHHHHHHHHHcCCceE--EEE------ecCCC
Confidence                    11478899999999987665443               123456677788888753  221      12224


Q ss_pred             HHHHHHHHHHHHHCCcCEEEE-c-CC---cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          302 PSKVAYVAKELHDMGCFEISL-G-DT---IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L-~-DT---~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      |+..   ++.+.+.|+|.|.+ . -+   .|. .|..  +.++.+++.  ..++.+    +-|.-..|.-.++++||+.|
T Consensus       116 p~~~---~~~~~~~g~d~v~~~~~~~~~~~g~-~~~~--~~i~~~~~~--~~pi~v----~GGI~~~~~~~~~~aGad~v  183 (207)
T 3ajx_A          116 KATR---AQEVRALGAKFVEMHAGLDEQAKPG-FDLN--GLLAAGEKA--RVPFSV----AGGVKVATIPAVQKAGAEVA  183 (207)
T ss_dssp             HHHH---HHHHHHTTCSEEEEECCHHHHTSTT-CCTH--HHHHHHHHH--TSCEEE----ESSCCGGGHHHHHHTTCSEE
T ss_pred             hHHH---HHHHHHhCCCEEEEEecccccccCC-CchH--HHHHHhhCC--CCCEEE----ECCcCHHHHHHHHHcCCCEE
Confidence            4442   23344568998733 1 11   232 2333  556666552  223433    23344458888999999966


Q ss_pred             e
Q 012949          377 D  377 (452)
Q Consensus       377 D  377 (452)
                      =
T Consensus       184 v  184 (207)
T 3ajx_A          184 V  184 (207)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=96.30  E-value=0.21  Score=48.92  Aligned_cols=168  Identities=16%  Similarity=0.197  Sum_probs=98.9

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHH----Hhcc---CCc
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAV----RDLE---GAR  196 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i----~~~~---~~~  196 (452)
                      .-+-|+.+|+ |-.+--+...+.+..++.++.+.+.|.+.|++|.-+ .|...| + ..++.++++    +.+.   ++.
T Consensus        16 ~imGilN~Tp-dSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~-v-~~~eE~~rv~pvi~~l~~~~~~p   92 (282)
T 1aj0_A           16 HVMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-V-SVEEELQRVIPVVEAIAQRFEVW   92 (282)
T ss_dssp             EEEEEEECCT-TTSCCCCCCTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCC-C-CHHHHHHHHHHHHHHHHHHCCCE
T ss_pred             EEEEEEeCCC-CccccccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCc-C-CHHHHHHHHHHHHHHHHhhcCCe
Confidence            3355677777 333222334688999999999999999999999743 343222 1 222333332    3221   444


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +++=+..                          .+-+++|+++|++.|.=.....+                  .++++.
T Consensus        93 iSIDT~~--------------------------~~va~aAl~aGa~iINdvsg~~d------------------~~~~~~  128 (282)
T 1aj0_A           93 ISVDTSK--------------------------PEVIRESAKVGAHIINDIRSLSE------------------PGALEA  128 (282)
T ss_dssp             EEEECCC--------------------------HHHHHHHHHTTCCEEEETTTTCS------------------TTHHHH
T ss_pred             EEEeCCC--------------------------HHHHHHHHHcCCCEEEECCCCCC------------------HHHHHH
Confidence            4332222                          24778999999998764322111                  244566


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCCCC----------HHHHHHHHHHHHHCCcC--EEEEcCCcCCC---cHHHHHHHHHHH
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGAIP----------PSKVAYVAKELHDMGCF--EISLGDTIGVG---TPGTVVPMLEAV  341 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r~d----------~e~l~~~a~~l~~~Gad--~I~L~DT~G~~---~P~~v~~li~~l  341 (452)
                      +++.|..+.  ++..-|.|..-...          .+++.+.++.+.++|++  .|.| |. |.+   ++++-.++++.+
T Consensus       129 ~a~~~~~vV--lmh~~G~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~Iil-DP-g~gf~k~~~~n~~ll~~l  204 (282)
T 1aj0_A          129 AAETGLPVC--LMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLL-DP-GFGFGKNLSHNYSLLARL  204 (282)
T ss_dssp             HHHHTCCEE--EECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE-EC-CTTSSCCHHHHHHHHHTG
T ss_pred             HHHhCCeEE--EEccCCCCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEE-eC-CCCcccCHHHHHHHHHHH
Confidence            778888775  55543433321111          56777888889999987  6766 54 322   355666677766


Q ss_pred             HH
Q 012949          342 MA  343 (452)
Q Consensus       342 ~~  343 (452)
                      ..
T Consensus       205 ~~  206 (282)
T 1aj0_A          205 AE  206 (282)
T ss_dssp             GG
T ss_pred             HH
Confidence            53

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=96.30  E-value=0.15  Score=49.46  Aligned_cols=173  Identities=13%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhcc---CCceeEEecchhhhhhh
Q 012949          134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLE---GARLPVLTPNLKVILQR  210 (452)
Q Consensus       134 LRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~---~~~l~~l~~~~~~~i~r  210 (452)
                      +.||.+.    .+.+..++.++.+.+.|-+.|++|....+     ....+++.+.++.+.   ++.+++=+..       
T Consensus        15 Fsdgg~~----~~~~~a~~~a~~~v~~GAdiIDIg~g~~~-----v~~~ee~~rvv~~i~~~~~~pisIDT~~-------   78 (262)
T 1f6y_A           15 IKRAIQE----RDPAPVQEWARRQEEGGARALDLNVGPAV-----QDKVSAMEWLVEVTQEVSNLTLCLDSTN-------   78 (262)
T ss_dssp             HHHHHHH----TCHHHHHHHHHHHHHHTCSEEEEBCC---------CHHHHHHHHHHHHHTTCCSEEEEECSC-------
T ss_pred             HHHhhhc----CCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CChHHHHHHHHHHHHHhCCCeEEEeCCC-------
Confidence            5566553    57899999999999999999999974322     122344444444332   3333322221       


Q ss_pred             hhhhhhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          211 SILFQQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                                         .+-+++|+++  |.+.|.=.... +               +.+.++.+.+++.|..+.  +
T Consensus        79 -------------------~~v~~aAl~a~~Ga~iINdvs~~-~---------------d~~~~~~~~~a~~~~~vv--l  121 (262)
T 1f6y_A           79 -------------------IKAIEAGLKKCKNRAMINSTNAE-R---------------EKVEKLFPLAVEHGAALI--G  121 (262)
T ss_dssp             -------------------HHHHHHHHHHCSSCEEEEEECSC-H---------------HHHHHHHHHHHHTTCEEE--E
T ss_pred             -------------------HHHHHHHHhhCCCCCEEEECCCC-c---------------ccHHHHHHHHHHhCCcEE--E
Confidence                               2366788888  88776522211 1               333456677888898664  4


Q ss_pred             Eee--ecCCCCCCCCHHHHHHHHHHHHHCCcC--EEEEcCC-cC---CC--cHHHHHHHHHHHHHhC-CCccEEEEeCCC
Q 012949          289 SCV--VGCPVEGAIPPSKVAYVAKELHDMGCF--EISLGDT-IG---VG--TPGTVVPMLEAVMAVV-PVEKLAVHLHDT  357 (452)
Q Consensus       289 ~~~--~g~p~~~r~d~e~l~~~a~~l~~~Gad--~I~L~DT-~G---~~--~P~~v~~li~~l~~~~-p~~~l~vH~Hnd  357 (452)
                      +..  -|.|......++++.+.++.+.++|++  .|.| |. +|   ..  ...++-+.++.+++.+ |+.|+-+=.+|-
T Consensus       122 mh~~~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~Iil-DPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Srk  200 (262)
T 1f6y_A          122 LTMNKTGIPKDSDTRLAFAMELVAAADEFGLPMEDLYI-DPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSNV  200 (262)
T ss_dssp             ESCCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEEE-ECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGGG
T ss_pred             EcCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEE-eCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecCC
Confidence            442  122211111235667777888899985  5666 54 22   21  1234444456666656 666766655553


Q ss_pred             -cCc
Q 012949          358 -YGQ  360 (452)
Q Consensus       358 -~Gl  360 (452)
                       +|+
T Consensus       201 sfg~  204 (262)
T 1f6y_A          201 SQNC  204 (262)
T ss_dssp             GTTC
T ss_pred             cCCC
Confidence             453

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=96.30  E-value=0.03  Score=52.41  Aligned_cols=173  Identities=14%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      +...+.++.+.+.|++.|+++..-.+ ++|.+....+..+.+++..+..+.+.+ -+            + +        
T Consensus        23 ~~~~~~i~~~~~~G~d~i~l~~~dg~-f~~~~~~~~~~i~~l~~~~~~~~~v~l~vn------------d-~--------   80 (230)
T 1rpx_A           23 SKLGEQVKAIEQAGCDWIHVDVMDGR-FVPNITIGPLVVDSLRPITDLPLDVHLMIV------------E-P--------   80 (230)
T ss_dssp             GGHHHHHHHHHHTTCCCEEEEEEBSS-SSSCBCCCHHHHHHHGGGCCSCEEEEEESS------------S-H--------
T ss_pred             HHHHHHHHHHHHCCCCEEEEeeccCC-cccccccCHHHHHHHHhccCCcEEEEEEec------------C-H--------
Confidence            45677888999999999999841000 122222223456666654433332211 00            0 0        


Q ss_pred             hccHHhHHHHHHcCCCEEEEEec--CChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFAS--ASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s--~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                         .+.++.+.++|++.|.+...  .++                ...+.++.+++.|+.+...+.     |.   ++.+.
T Consensus        81 ---~~~v~~~~~~Gad~v~vh~~~~~~~----------------~~~~~~~~~~~~g~~ig~~~~-----p~---t~~e~  133 (230)
T 1rpx_A           81 ---DQRVPDFIKAGADIVSVHCEQSSTI----------------HLHRTINQIKSLGAKAGVVLN-----PG---TPLTA  133 (230)
T ss_dssp             ---HHHHHHHHHTTCSEEEEECSTTTCS----------------CHHHHHHHHHHTTSEEEEEEC-----TT---CCGGG
T ss_pred             ---HHHHHHHHHcCCCEEEEEecCccch----------------hHHHHHHHHHHcCCcEEEEeC-----CC---CCHHH
Confidence               12688899999999987764  332                123556777788887653332     11   22333


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcC--C---CcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          305 VAYVAKELHDMGCFEISLGDTIG--V---GTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G--~---~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      +..+     ..++|.|. .++++  .   -.+....+.++.+++..+    ..++.+    +.|....|.-.++++||+.
T Consensus       134 ~~~~-----~~~~d~vl-~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v----~GGI~~~n~~~~~~aGad~  203 (230)
T 1rpx_A          134 IEYV-----LDAVDLVL-IMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANA  203 (230)
T ss_dssp             GTTT-----TTTCSEEE-EESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCE
T ss_pred             HHHH-----HhhCCEEE-EEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCE
Confidence            3222     24688664 45552  2   122334455566665442    334444    4555567888889999998


Q ss_pred             Eeec
Q 012949          376 VDCS  379 (452)
Q Consensus       376 VD~S  379 (452)
                      |.+.
T Consensus       204 vvvg  207 (230)
T 1rpx_A          204 LVAG  207 (230)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            8776

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=96.29  E-value=0.029  Score=55.69  Aligned_cols=203  Identities=18%  Similarity=0.130  Sum_probs=127.2

Q ss_pred             cCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-c-CCceeEEecchhhhhhhhh
Q 012949          137 GLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-E-GARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       137 G~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~-~~~l~~l~~~~~~~i~r~~  212 (452)
                      +.+..+.  ..+.+....+++...+.+-+.|--.+...-++.    ..+.+...++.. . ...+++.+.. .       
T Consensus        15 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~----g~~~~~~~v~~aa~~~~~VPValHL-D-------   82 (307)
T 3n9r_A           15 EGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHL-D-------   82 (307)
T ss_dssp             HTCCEEEEECSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHH----CHHHHHHHHHHHHHHSTTSCEEEEE-E-------
T ss_pred             cCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhC----CHHHHHHHHHHHHHhcCCCcEEEEC-C-------
Confidence            4444432  478899999999999999997765543211111    112222333221 1 1233332210 0       


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                         .+          ...+.+..|+++|..-|.+=.|.          .+.+|.++.-++++++|++.|+.|.+.|-..-
T Consensus        83 ---Hg----------~~~e~~~~ai~~GFtSVMiDgS~----------~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~ig  139 (307)
T 3n9r_A           83 ---HG----------TTFESCEKAVKAGFTSVMIDASH----------HAFEENLELTSKVVKMAHNAGVSVEAELGRLM  139 (307)
T ss_dssp             ---EE----------CSHHHHHHHHHHTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC
T ss_pred             ---CC----------CCHHHHHHHHHhCCCcEEEECCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeec
Confidence               01          02357888999999988874442          25689999999999999999999998887754


Q ss_pred             cCCCC--------CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC----cHHHHHHHHHHHHHhCCCccEEEEeC---
Q 012949          293 GCPVE--------GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG----TPGTVVPMLEAVMAVVPVEKLAVHLH---  355 (452)
Q Consensus       293 g~p~~--------~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~----~P~~v~~li~~l~~~~p~~~l~vH~H---  355 (452)
                      |.++.        ..++|+...+++++   .|+|.+.++  -.=|.-    .|.-=.++++.+++ .+++||.+|.=   
T Consensus       140 G~Ed~~~~~~~~~~yT~Peea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~-~~~~PLVlHGgS~v  215 (307)
T 3n9r_A          140 GIEDNISVDEKDAVLVNPKEAEQFVKE---SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR-LTNIPLVLHGASAI  215 (307)
T ss_dssp             CC----------CCSCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHH-HHCSCEEESSCCCC
T ss_pred             cccCCcccccccccCCCHHHHHHHHHH---HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHh-cCCCCeEEeCCCCc
Confidence            54432        24789988888765   489976654  222322    23222344555544 34568999974   


Q ss_pred             ----------------CCcCcHHHHHHHHHHcCCCEEee
Q 012949          356 ----------------DTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       356 ----------------nd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                                      ++.|........|+..|+.-|+.
T Consensus       216 p~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiNi  254 (307)
T 3n9r_A          216 PDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNT  254 (307)
T ss_dssp             CHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEEE
T ss_pred             chHHHHHHHHhcCccCCCCCCCHHHHHHHHHcCceEEEe
Confidence                            47799999999999999886643

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=96.25  E-value=0.0048  Score=59.50  Aligned_cols=170  Identities=16%  Similarity=0.125  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhcc-CCceeE-Eecchhhhhhhhhhhhhccc
Q 012949          146 PTGVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLE-GARLPV-LTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~-l~~~~~~~i~r~~~~~~~~~  219 (452)
                      +...-.+-++.|.++|++.+-+    |.|+     |.+.--..+++.+++.. +..+-+ |..+-               
T Consensus        38 D~~~L~~~i~~l~~~G~d~lHvDVmDg~FV-----pnit~G~~~v~~lr~~~p~~~ldvHLmv~~---------------   97 (246)
T 3inp_A           38 DLARLGDDVKAVLAAGADNIHFDVMDNHYV-----PNLTFGPMVLKALRDYGITAGMDVHLMVKP---------------   97 (246)
T ss_dssp             CGGGHHHHHHHHHHTTCCCEEEEEEBSSSS-----SCBCCCHHHHHHHHHHTCCSCEEEEEECSS---------------
T ss_pred             ChhhHHHHHHHHHHcCCCEEEEEecCCCcC-----cchhcCHHHHHHHHHhCCCCeEEEEEeeCC---------------
Confidence            4444566778888999996666    5544     44443346788887654 554444 22110               


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                               ..+.++.++++|++.|.+-.-+.                +.+.+.++.+|+.|.++.+.+.     |.   
T Consensus        98 ---------p~~~i~~~~~aGAd~itvH~Ea~----------------~~~~~~i~~ir~~G~k~Gvaln-----p~---  144 (246)
T 3inp_A           98 ---------VDALIESFAKAGATSIVFHPEAS----------------EHIDRSLQLIKSFGIQAGLALN-----PA---  144 (246)
T ss_dssp             ---------CHHHHHHHHHHTCSEEEECGGGC----------------SCHHHHHHHHHTTTSEEEEEEC-----TT---
T ss_pred             ---------HHHHHHHHHHcCCCEEEEccccc----------------hhHHHHHHHHHHcCCeEEEEec-----CC---
Confidence                     01267888999999999865322                2235677888999998875443     21   


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhC----CCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVV----PVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~----p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      ++.+.+.++..     .+|.|.+    +...|...-....+.|+.+++..    .+.+|++    |-|....|+-.++++
T Consensus       145 Tp~e~l~~~l~-----~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V----DGGI~~~ti~~~~~a  215 (246)
T 3inp_A          145 TGIDCLKYVES-----NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEI----DGGVNPYNIAEIAVC  215 (246)
T ss_dssp             CCSGGGTTTGG-----GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE----ESSCCTTTHHHHHTT
T ss_pred             CCHHHHHHHHh-----cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEE----ECCcCHHHHHHHHHc
Confidence            23344433332     3676654    33444322233334455555533    2345665    567777788999999


Q ss_pred             CCCEEe
Q 012949          372 GISTVD  377 (452)
Q Consensus       372 Ga~~VD  377 (452)
                      ||+.+=
T Consensus       216 GAD~~V  221 (246)
T 3inp_A          216 GVNAFV  221 (246)
T ss_dssp             TCCEEE
T ss_pred             CCCEEE
Confidence            999653

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=96.24  E-value=0.31  Score=47.00  Aligned_cols=241  Identities=12%  Similarity=0.066  Sum_probs=140.4

Q ss_pred             cCCCCccEEEeCCccccCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccC--C
Q 012949          121 KGIPRFVKIVEVGPRDGLQNEKN---TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEG--A  195 (452)
Q Consensus       121 ~~~p~~V~I~D~TLRDG~Q~~~~---~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~--~  195 (452)
                      +.|.+.|+|-++++=+|.-..-.   .-+.++.++-++.+...|.|.||+-...-    ....+.+++.+.+..+..  .
T Consensus         2 ~~m~~~v~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l----~~~~~~~~v~~~l~~lr~~~~   77 (258)
T 4h3d_A            2 NAMKRKVQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFF----ENVENIKEVKEVLYELRSYIH   77 (258)
T ss_dssp             --CCCCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGC----TTTTCHHHHHHHHHHHHHHCT
T ss_pred             CCCcceEEEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeeccc----cccCCHHHHHHHHHHHHHhcC
Confidence            46788899999999777532211   23567777788888899999999985422    112345555555543211  1


Q ss_pred             ceeEEe--cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHH
Q 012949          196 RLPVLT--PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRA  272 (452)
Q Consensus       196 ~l~~l~--~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~  272 (452)
                      .++++.  +...+     =|.....++       .+.+-++.+++.| ++.|.+-....+               +...+
T Consensus        78 ~lPiI~T~Rt~~E-----GG~~~~~~~-------~~~~ll~~~~~~~~~d~iDvEl~~~~---------------~~~~~  130 (258)
T 4h3d_A           78 DIPLLFTFRSVVE-----GGEKLISRD-------YYTTLNKEISNTGLVDLIDVELFMGD---------------EVIDE  130 (258)
T ss_dssp             TSCEEEECCCGGG-----TCSCCCCHH-------HHHHHHHHHHHTTCCSEEEEEGGGCH---------------HHHHH
T ss_pred             CCCEEEEEechhh-----CCCCCCCHH-------HHHHHHHHHHhcCCchhhHHhhhccH---------------HHHHH
Confidence            233332  22210     000000000       0123456667776 899998876543               23346


Q ss_pred             HHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH---hCCCcc
Q 012949          273 VAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA---VVPVEK  349 (452)
Q Consensus       273 ~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~---~~p~~~  349 (452)
                      +++.+++.|.+|.  +|+=.   +....+.+.+....+.+.+.|||.+-|+=+.  -++.++.+++....+   ..++.|
T Consensus       131 l~~~a~~~~~kiI--~S~Hd---f~~TP~~~el~~~~~~~~~~gaDIvKia~~~--~~~~D~l~Ll~~~~~~~~~~~~~P  203 (258)
T 4h3d_A          131 VVNFAHKKEVKVI--ISNHD---FNKTPKKEEIVSRLCRMQELGADLPKIAVMP--QNEKDVLVLLEATNEMFKIYADRP  203 (258)
T ss_dssp             HHHHHHHTTCEEE--EEEEE---SSCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHhCCCEEE--EEEec---CCCCCCHHHHHHHHHHHHHhCCCEEEEEEcc--CCHHHHHHHHHHHHHHHHhcCCCC
Confidence            7788889998876  33210   1222345788889999999999999997553  467888777766543   345545


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          350 LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       350 l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                      +-.-+=-..  +.-.=+.+-..|-....+++.   + |-|   .|+.+++++-..|+.+
T Consensus       204 ~I~~~MG~~--G~~SRi~~~~fGS~lTf~~~~---~-~sA---PGQl~~~el~~~l~lL  253 (258)
T 4h3d_A          204 IITMSMSGM--GVISRLCGEIFGSALTFGAAK---S-VSA---PGQISFKELNSVLNLL  253 (258)
T ss_dssp             BEEEECTGG--GGGGGTCHHHHCBCEEECBCC-------C---TTCCBHHHHHHHHHHH
T ss_pred             EEEEeCCCC--ChHHHHHHHHhCCceEeccCC---C-CCC---CCCCCHHHHHHHHHHH
Confidence            543332222  233344555677777777653   3 334   5599999988877653

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=96.23  E-value=0.026  Score=56.18  Aligned_cols=152  Identities=15%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             CCCC-ccEEEeCCcc---ccCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhc---
Q 012949          122 GIPR-FVKIVEVGPR---DGLQNEKNTVPT-GVKVELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL---  192 (452)
Q Consensus       122 ~~p~-~V~I~D~TLR---DG~Q~~~~~~~~-~~k~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~---  192 (452)
                      +-|. -+.|+|+|+=   ||.+..  ..+. +..++.++.+.+.|.+.|++|.- ..|...+  .+.++.++.++.+   
T Consensus        45 ~~p~i~m~I~n~tpdsf~d~i~~~--~~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~--vs~eee~~vV~~v~~~  120 (310)
T 2h9a_B           45 NPPRFALEVFDTPPTDWPDILVEP--FKDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQN--RSGAELAEVCKAVADA  120 (310)
T ss_dssp             SCCEEEEEEESSCCSSCCHHHHGG--GTTTTTCHHHHHHHHHHTTCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeeCCCcccchhhhhh--hccHHHHHHHHHHHHHHcCCcEEEEeCccCCCCCCC--CCHHHHHHHHHHHHHh
Confidence            3344 4679999885   662221  1222 67788889999999999999974 3343221  2455666666543   


Q ss_pred             cCCceeE-EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCC---EEEEEecCChHHHhhhcCCCHHHHHH
Q 012949          193 EGARLPV-LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK---EVAIFASASEAFSKSNINCSIEDSLV  268 (452)
Q Consensus       193 ~~~~l~~-l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~---~V~i~~s~Sd~~~~~~~~~s~e~~l~  268 (452)
                      .++.+++ =+-+.+           .           ..+-+++|+++|.+   .|.=.   |.               .
T Consensus       121 ~~vplsI~DT~~~~-----------~-----------~~~V~eaal~aga~~k~iINdv---s~---------------~  160 (310)
T 2h9a_B          121 IDVPLMIIGCGVEE-----------K-----------DAEIFPVIGEALSGRNCLLSSA---TK---------------D  160 (310)
T ss_dssp             CSSCEEEECCSCHH-----------H-----------HHHHHHHHHHHTTTSCCEEEEE---CT---------------T
T ss_pred             CCceEEEECCCCCC-----------C-----------CHHHHHHHHHhCCCCCCEEEEC---CC---------------C
Confidence            2444433 121111           0           12367889999987   44322   22               0


Q ss_pred             HHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCc--CEEEEcCCcC
Q 012949          269 RYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGC--FEISLGDTIG  327 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Ga--d~I~L~DT~G  327 (452)
                      +..++...|++.|..+.  ++.    +    -|.+++.+..+.+.++|+  +.|.|==.+|
T Consensus       161 ~~~~~~~~aa~~g~~vv--~m~----~----~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g  211 (310)
T 2h9a_B          161 NYKPIVATCMVHGHSVV--ASA----P----LDINLSKQLNIMIMEMNLAPNRIIMDPLIG  211 (310)
T ss_dssp             THHHHHHHHHHHTCEEE--EEC----S----SCHHHHHHHHHHHHTTTCCGGGEEEECCCC
T ss_pred             ccHHHHHHHHHhCCCEE--EEC----h----hHHHHHHHHHHHHHHCCCChhhEEEeCCCc
Confidence            22455677788898765  332    1    156889999999999998  5777733445

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=96.18  E-value=0.21  Score=47.67  Aligned_cols=129  Identities=18%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             HhHHHHHHcCCCEE--EEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEV--AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V--~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +.++.|++.|++.|  .+.....          +.++.++.+.++++.+++.|+++.+.+ ...|.......+++.+.++
T Consensus       103 ~~v~~a~~~Ga~~v~~~l~~~~~----------~~~~~~~~~~~v~~~~~~~g~~viv~~-~~~G~~l~~~~~~~~~~~~  171 (273)
T 2qjg_A          103 TTVEEAIRMGADAVSIHVNVGSD----------EDWEAYRDLGMIAETCEYWGMPLIAMM-YPRGKHIQNERDPELVAHA  171 (273)
T ss_dssp             SCHHHHHHTTCSEEEEEEEETST----------THHHHHHHHHHHHHHHHHHTCCEEEEE-EECSTTCSCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEEecCCC----------CHHHHHHHHHHHHHHHHHcCCCEEEEe-CCCCcccCCCCCHhHHHHH
Confidence            37889999999999  5544422          345677888899999999999886542 1222111011456677777


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc---CcHHHHHHHHHHcCCCEEee
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY---GQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~---GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ++.+.++|+|.|.+.-+   ..++    +++.+++..+ +++-.|.=-+.   -.++.....++++||+.|-.
T Consensus       172 a~~a~~~Gad~i~~~~~---~~~~----~l~~i~~~~~-ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          172 ARLGAELGADIVKTSYT---GDID----SFRDVVKGCP-APVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             HHHHHHTTCSEEEECCC---SSHH----HHHHHHHHCS-SCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             HHHHHHcCCCEEEECCC---CCHH----HHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            78999999999988743   2333    4555555554 46666653222   22333366777899986654

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=96.08  E-value=0.31  Score=45.98  Aligned_cols=214  Identities=14%  Similarity=0.115  Sum_probs=103.2

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec-chhhhhhhhhhhhhccchhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKVILQRSILFQQCHASVISSNLWVY  229 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~-~~~~~i~r~~~~~~~~~~~i~~~~~~~  229 (452)
                      .+.++.+.++|++.||+.......+.+  .+.+++.+.++. .++++.++.+ ...      ..+.......-+......
T Consensus        20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~l~~-~gl~~~~~~~~~~~------~~l~~~d~~~r~~~~~~~   90 (290)
T 2qul_A           20 PATAKRIAGLGFDLMEISLGEFHNLSD--AKKRELKAVADD-LGLTVMCCIGLKSE------YDFASPDKSVRDAGTEYV   90 (290)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTGGGSCH--HHHHHHHHHHHH-HTCEEEEEEEECGG------GCTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEecCCccccch--hhHHHHHHHHHH-cCCceEEecCCCCC------CCCCCCCHHHHHHHHHHH
Confidence            456667778999999997542111000  122333333332 3566655431 100      000000000000000012


Q ss_pred             HHhHHHHHHcCCCEEEEEe----cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFA----SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~----s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      .+.++.|.+.|++.|.+..    ...............+...+.+.++.++|++.|+++.  +...-..+...-.+++.+
T Consensus        91 ~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~~~~~~~~~~~  168 (290)
T 2qul_A           91 KRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYA--LEVVNRFEQWLCNDAKEA  168 (290)
T ss_dssp             HHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEE--EECCCTTTCSSCCSHHHH
T ss_pred             HHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCccccccccCCHHHH
Confidence            3477888889999988643    1100000000001134455666677788999998754  332110011112366777


Q ss_pred             HHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          306 AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       306 ~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      .++++.+   +.+  .+++ |+.=...-.  .+..+.+++ +.+-...+|.||..+                     .-+
T Consensus       169 ~~l~~~~---~~~~~g~~~-D~~h~~~~g--~d~~~~l~~-~~~~i~~vH~~D~~~---------------------~~~  220 (290)
T 2qul_A          169 IAFADAV---DSPACKVQL-DTFHMNIEE--TSFRDAILA-CKGKMGHFHLGEANR---------------------LPP  220 (290)
T ss_dssp             HHHHHHH---CCTTEEEEE-EHHHHHHHC--SCHHHHHHH-TTTTEEEEEECCTTS---------------------CCT
T ss_pred             HHHHHHc---CCCCEEEEE-EchhhhhcC--CCHHHHHHH-HHhheeEEEEccCCC---------------------CCC
Confidence            7776554   322  3333 762111100  012233333 333347899998742                     012


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      |        .|..+.+.++..|+..|++
T Consensus       221 G--------~G~id~~~~~~~L~~~gy~  240 (290)
T 2qul_A          221 G--------EGRLPWDEIFGALKEIGYD  240 (290)
T ss_dssp             T--------SSCSCHHHHHHHHHHTTCC
T ss_pred             C--------CCCcCHHHHHHHHHHhCCC
Confidence            2        4789999999999986654

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=96.06  E-value=0.27  Score=48.75  Aligned_cols=218  Identities=16%  Similarity=0.100  Sum_probs=128.1

Q ss_pred             HHHHHHHCCCCEEEEe-cCC------CCCcccccCCHHHHHHHHHhccCC---ceeEEecchhhhhhhhhhhhhccchhh
Q 012949          153 LIRRLVSSGLPVVEAT-SFV------SPKWVPQLADARDVMEAVRDLEGA---RLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG-~~~------s~~~~p~~~D~e~v~~~i~~~~~~---~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      -++.++++||+.|=++ +..      .|.-.  .-..++++..++.+...   .+++++.. .      .+|.. +.++.
T Consensus        37 sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~--~vt~~em~~~~~~i~r~~~~~~PviaD~-d------~Gyg~-~~~v~  106 (307)
T 3lye_A           37 SARTAMELGFKSLYMTGAGTTASRLGQPDLA--IAQLHDMRDNADMIANLDPFGPPLIADM-D------TGYGG-PIMVA  106 (307)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHHHHCCCSSS--CSCHHHHHHHHHHHHTSSTTSCCEEEEC-T------TCSSS-HHHHH
T ss_pred             HHHHHHHcCCCEEEeccHHHHHHhcCCCCCC--CCCHHHHHHHHHhhhccCCCCCcEEEEC-C------CCCCC-HHHHH
Confidence            3667788999999994 211      22211  13456777777765432   35554422 1      24543 33332


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC-
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-  298 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~-  298 (452)
                              +.++...++|+.-|+|-..+.+-   |...+-=.+.++..++++.+.+.+++.|....+ +..+    |+- 
T Consensus       107 --------~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I-~ART----Da~~  173 (307)
T 3lye_A          107 --------RTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVL-IART----DALQ  173 (307)
T ss_dssp             --------HHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEE-EEEE----CCHH
T ss_pred             --------HHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEec----hhhh
Confidence                    26777888999999999877542   111111247889999998777777666644321 1111    110 


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC-CcCcHHHHHHHHHHcCCCEEe
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD-TYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn-d~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ....+...+=++...++|||.|.+.   |.-+++++.++.+.+. .+|. .+-+-... +..+. .  -.--++|+++|-
T Consensus       174 ~~gldeAi~Ra~ay~eAGAD~ifi~---~~~~~~~~~~i~~~~~-~~Pv-~~n~~~~g~~p~~t-~--~eL~~lGv~~v~  245 (307)
T 3lye_A          174 SLGYEECIERLRAARDEGADVGLLE---GFRSKEQAAAAVAALA-PWPL-LLNSVENGHSPLIT-V--EEAKAMGFRIMI  245 (307)
T ss_dssp             HHCHHHHHHHHHHHHHTTCSEEEEC---CCSCHHHHHHHHHHHT-TSCB-EEEEETTSSSCCCC-H--HHHHHHTCSEEE
T ss_pred             ccCHHHHHHHHHHHHHCCCCEEEec---CCCCHHHHHHHHHHcc-CCce-eEEeecCCCCCCCC-H--HHHHHcCCeEEE
Confidence            1134566667777889999999986   6678888888888774 2342 12222221 22222 2  333456999985


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      .....+        |+-..++++.+..|+..|
T Consensus       246 ~~~~~~--------raa~~a~~~~~~~l~~~g  269 (307)
T 3lye_A          246 FSFATL--------APAYAAIRETLVRLRDHG  269 (307)
T ss_dssp             EETTTH--------HHHHHHHHHHHHHHHHHS
T ss_pred             EChHHH--------HHHHHHHHHHHHHHHHhC
Confidence            544433        566788888888887643

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=96.03  E-value=0.74  Score=43.62  Aligned_cols=189  Identities=14%  Similarity=0.086  Sum_probs=116.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.++..++++...+.|+..+.+-    |.|+|         ...+.+.++++...+ +..        ++..+.+   
T Consensus        13 ~~t~~~i~~l~~~A~~~~~~aVcv~----p~~v~---------~a~~~l~gv~v~tvi-gFP--------~G~~~~~---   67 (226)
T 1vcv_A           13 YLTVDEAVAGARKAEELGVAAYCVN----PIYAP---------VVRPLLRKVKLCVVA-DFP--------FGALPTA---   67 (226)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH---------HHGGGCSSSEEEEEE-STT--------TCCSCHH---
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH---------HHHHHhCCCeEEEEe-CCC--------CCCCchH---
Confidence            4589999999999999999999983    33332         111122235554433 110        0011110   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .....++. ++.|++.|.+.+.....     .....++..+.+..+.+.|++.+++|.  |.       ....+.+
T Consensus        68 ----~k~~E~~~-i~~GAdEID~Vinig~~-----~~g~~~~v~~ei~~v~~a~~~~~lKvI--lE-------t~~Lt~e  128 (226)
T 1vcv_A           68 ----SRIALVSR-LAEVADEIDVVAPIGLV-----KSRRWAEVRRDLISVVGAAGGRVVKVI--TE-------EPYLRDE  128 (226)
T ss_dssp             ----HHHHHHHH-HTTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTTTSEEEEE--CC-------GGGCCHH
T ss_pred             ----HHHHHHHH-HHCCCCEEEEecchhhh-----cCCCHHHHHHHHHHHHHHHcCCCceEE--Ee-------ccCCCHH
Confidence                12246778 99999999999876543     123467778888888888766555553  21       1233578


Q ss_pred             HHHHHHHHHHHCCcCEEEEc--CC----------cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          304 KVAYVAKELHDMGCFEISLG--DT----------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~--DT----------~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      .+.+.++.+.++|||-|--.  =+          .|.++|+++.-|-+.++. .+. ++.+..---... ...+++=+++
T Consensus       129 ei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~-~g~-~v~vKaaGGirt-~~~al~~i~a  205 (226)
T 1vcv_A          129 ERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE-KGY-RLGVKMAGGIRT-REQAKAIVDA  205 (226)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH-HTC-CCEEEEESSCCS-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHH-hCC-CceEEEeCCCCC-HHHHHHHHHH
Confidence            89999999999999988765  22          366788888766555443 332 344443322221 4455555555


Q ss_pred             ---CCC----EEeec
Q 012949          372 ---GIS----TVDCS  379 (452)
Q Consensus       372 ---Ga~----~VD~S  379 (452)
                         |++    ++-+|
T Consensus       206 ~~~Ga~~~~fRiGtS  220 (226)
T 1vcv_A          206 IGWGEDPARVRLGTS  220 (226)
T ss_dssp             HCSCSCTTTEEEEES
T ss_pred             HHCCCCcCCceEecC
Confidence               999    88766

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.95  E-value=0.037  Score=51.64  Aligned_cols=171  Identities=16%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.++-+++++.+ +.|++.+|+|++-+      +....++++.+++. ++..+...+   +     ++   ..+    
T Consensus        15 ~~~~~~~~~~~~~~-~~~vd~ie~g~~~~------~~~G~~~i~~lr~~~~~~~i~ld~---~-----l~---d~p----   72 (218)
T 3jr2_A           15 QTNLTDAVAVASNV-ASYVDVIEVGTILA------FAEGMKAVSTLRHNHPNHILVCDM---K-----TT---DGG----   72 (218)
T ss_dssp             CSSHHHHHHHHHHH-GGGCSEEEECHHHH------HHHTTHHHHHHHHHCTTSEEEEEE---E-----EC---SCH----
T ss_pred             CCCHHHHHHHHHHh-cCCceEEEeCcHHH------HhcCHHHHHHHHHhCCCCcEEEEE---e-----ec---ccH----
Confidence            45788889999997 56999999996321      11112456667654 444332211   1     00   000    


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                             ...++.++++|++.|.+.....+               +.+.++++.+|+.|.++.+-+   .+.     .++
T Consensus        73 -------~~~~~~~~~aGad~i~vh~~~~~---------------~~~~~~~~~~~~~g~~~~~d~---l~~-----~T~  122 (218)
T 3jr2_A           73 -------AILSRMAFEAGADWITVSAAAHI---------------ATIAACKKVADELNGEIQIEI---YGN-----WTM  122 (218)
T ss_dssp             -------HHHHHHHHHHTCSEEEEETTSCH---------------HHHHHHHHHHHHHTCEEEEEC---CSS-----CCH
T ss_pred             -------HHHHHHHHhcCCCEEEEecCCCH---------------HHHHHHHHHHHHhCCccceee---eec-----CCH
Confidence                   12568889999999988764332               234566778888898754211   211     234


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc-----CCcCC-CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          303 SKVAYVAKELHDMGCFEISLG-----DTIGV-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~-----DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +.+.+    +.+.|+|.+.+.     ...|. ..|..+ +.++.++.  +..++.+    +.|.-..|+-.++++||+.|
T Consensus       123 ~~~~~----~~~~g~d~v~~~~~~~~~~~g~~~~~~~l-~~i~~~~~--~~~pi~v----~GGI~~~~~~~~~~aGAd~v  191 (218)
T 3jr2_A          123 QDAKA----WVDLGITQAIYHRSRDAELAGIGWTTDDL-DKMRQLSA--LGIELSI----TGGIVPEDIYLFEGIKTKTF  191 (218)
T ss_dssp             HHHHH----HHHTTCCEEEEECCHHHHHHTCCSCHHHH-HHHHHHHH--TTCEEEE----ESSCCGGGGGGGTTSCEEEE
T ss_pred             HHHHH----HHHcCccceeeeeccccccCCCcCCHHHH-HHHHHHhC--CCCCEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            43333    345599976551     11122 233333 33444443  2334544    33444456667899998865


Q ss_pred             e
Q 012949          377 D  377 (452)
Q Consensus       377 D  377 (452)
                      =
T Consensus       192 v  192 (218)
T 3jr2_A          192 I  192 (218)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=95.91  E-value=1.7  Score=43.90  Aligned_cols=232  Identities=19%  Similarity=0.115  Sum_probs=136.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      +.+.+.-++=++.|.++|.+.|.++.+.       .. +.+.+..+++..++.+.+=+ -+.                  
T Consensus        42 T~D~~atv~Qi~~l~~aG~diVRvavp~-------~~-~a~al~~I~~~~~vPlvaDiHf~~------------------   95 (366)
T 3noy_A           42 THDVEATLNQIKRLYEAGCEIVRVAVPH-------KE-DVEALEEIVKKSPMPVIADIHFAP------------------   95 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCEEEEECCS-------HH-HHHHHHHHHHHCSSCEEEECCSCH------------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCCCC-------hH-HHHHHHHHHhcCCCCEEEeCCCCH------------------
Confidence            3678888888999999999999998642       22 23344445443333332211 111                  


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-----  297 (452)
                              +-+..|+++|++.+||--        -|++.     -+++.++++.||++|+.++.-+-  +|+-+.     
T Consensus        96 --------~lal~a~e~G~dklRINP--------GNig~-----~~~~~~vv~~ak~~~~piRIGvN--~GSL~~~ll~~  152 (366)
T 3noy_A           96 --------SYAFLSMEKGVHGIRINP--------GNIGK-----EEIVREIVEEAKRRGVAVRIGVN--SGSLEKDLLEK  152 (366)
T ss_dssp             --------HHHHHHHHTTCSEEEECH--------HHHSC-----HHHHHHHHHHHHHHTCEEEEEEE--GGGCCHHHHHH
T ss_pred             --------HHHHHHHHhCCCeEEECC--------cccCc-----hhHHHHHHHHHHHcCCCEEEecC--CcCCCHHHHHh
Confidence                    144568899999998742        24443     24677899999999999995443  343221     


Q ss_pred             -CCCCHHHH----HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc-CcH------HHHH
Q 012949          298 -GAIPPSKV----AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQS------LPNI  365 (452)
Q Consensus       298 -~r~d~e~l----~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~-GlA------~ANa  365 (452)
                       +..+++-+    .+.++.+.+.|.+.|.+  +.-...+..+.+-.+.|.++.+ -||  |+--|- |..      .+-.
T Consensus       153 yg~~~~eamVeSAl~~~~~~e~~gf~~ivi--S~K~S~v~~~i~ayr~la~~~d-yPL--HlGvTEAG~~~~G~ikSsig  227 (366)
T 3noy_A          153 YGYPSAEALAESALRWSEKFEKWGFTNYKV--SIKGSDVLQNVRANLIFAERTD-VPL--HIGITEAGMGTKGIIKSSVG  227 (366)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHTTCCCEEE--EEECSSHHHHHHHHHHHHHHCC-CCE--EECCSSCCSHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHhCCCCeEEE--eeecCChHHHHHHHHHHHhccC-CCE--EEccCCCCCCcceeeehHHH
Confidence             11244443    34667788889864443  2222244444444555555532 344  555442 554      3344


Q ss_pred             HHHHH-cCC-CEEeecccCCCCCCCCCCCCCcccHHHHHHHH---HcCCC--------------CCCCChhhHHHHHHHH
Q 012949          366 LISLQ-MGI-STVDCSVAGLGGCPYAKGASGNVATEDVVYML---SGLGV--------------ETNVDLRKLMLAGDFI  426 (452)
Q Consensus       366 LaAl~-aGa-~~VD~Sv~GlGecP~a~graGNaalE~vv~~L---~~~Gi--------------~t~iDl~~L~~la~~v  426 (452)
                      +-+|. .|. |.|-+|+.+             .|.||+-.+.   +.+|+              .+.+|+   .++++.+
T Consensus       228 iG~LL~dGIGDTIRVSLt~-------------~p~~Ev~va~~ILqslglR~~g~~~ISCPtCGRt~~dl---~~~~~~i  291 (366)
T 3noy_A          228 IGILLYMGIGDTVRVSLTD-------------DPVVEVETAYEILKSLGLRRRGVEIVACPTCGRIEVDL---PKVVKEV  291 (366)
T ss_dssp             HHHHHHTTCCSEECCCCSS-------------CHHHHHHHHHHHHHHTTSCCSSCEEEECCCCTTCCSCH---HHHHHHH
T ss_pred             HHHHHHhcccceEEEeCCC-------------CcHHHHHHHHHHHHhcCCCcCCCEEEECCCCCCccccH---HHHHHHH
Confidence            55555 475 788888772             2677775443   33332              245666   5556677


Q ss_pred             HHHh-CCCCCCCcccccchh
Q 012949          427 NKHL-GRPSGSKTAIALNRI  445 (452)
Q Consensus       427 ~~~~-g~~~p~~~pi~G~~v  445 (452)
                      ++.+ +++.|-+.++.|.-|
T Consensus       292 e~~l~~~~~~lkVAVMGCvV  311 (366)
T 3noy_A          292 QEKLSGVKTPLKVAVMGCVV  311 (366)
T ss_dssp             HHHTTTCCSCCEEEEESSSH
T ss_pred             HHHHhCCCCCCEEEEEcccc
Confidence            7766 566677777777543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.91  E-value=0.22  Score=47.12  Aligned_cols=169  Identities=15%  Similarity=0.090  Sum_probs=98.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      -+.+...++++...+.|...|++++            . +.++.+++..+.  +++.-+++       .|..+. -.|. 
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~------------~-~~i~~ir~~v~~--Pvig~~k~-------~~~~~~-~~I~-   88 (229)
T 3q58_A           33 DKPEIVAAMAQAAASAGAVAVRIEG------------I-ENLRTVRPHLSV--PIIGIIKR-------DLTGSP-VRIT-   88 (229)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES------------H-HHHHHHGGGCCS--CEEEECBC-------CCSSCC-CCBS-
T ss_pred             CCcchHHHHHHHHHHCCCcEEEECC------------H-HHHHHHHHhcCC--CEEEEEee-------cCCCCc-eEeC-
Confidence            4678899999999999999999974            1 345666654443  33211111       000000 0000 


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~--Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                         -+.++++.++++|+|.|.+-...  ++               +.+.++++++|++|+.+.+.+           .+.
T Consensus        89 ---~~~~~i~~~~~aGad~I~l~~~~~~~p---------------~~l~~~i~~~~~~g~~v~~~v-----------~t~  139 (229)
T 3q58_A           89 ---PYLQDVDALAQAGADIIAFDASFRSRP---------------VDIDSLLTRIRLHGLLAMADC-----------STV  139 (229)
T ss_dssp             ---CSHHHHHHHHHHTCSEEEEECCSSCCS---------------SCHHHHHHHHHHTTCEEEEEC-----------SSH
T ss_pred             ---ccHHHHHHHHHcCCCEEEECccccCCh---------------HHHHHHHHHHHHCCCEEEEec-----------CCH
Confidence               12347888999999988665432  12               234577788888898775321           123


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc--C-CcC--CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          303 SKVAYVAKELHDMGCFEISLG--D-TIG--VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~--D-T~G--~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                          +.++.+.++|+|.|.+.  + |.+  ...|  -.++++.+++.  .+++-.=    -|.. ..+...++++||+.|
T Consensus       140 ----eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~--~~~li~~l~~~--~ipvIA~----GGI~t~~d~~~~~~~GadgV  207 (229)
T 3q58_A          140 ----NEGISCHQKGIEFIGTTLSGYTGPITPVEP--DLAMVTQLSHA--GCRVIAE----GRYNTPALAANAIEHGAWAV  207 (229)
T ss_dssp             ----HHHHHHHHTTCSEEECTTTTSSSSCCCSSC--CHHHHHHHHTT--TCCEEEE----SSCCSHHHHHHHHHTTCSEE
T ss_pred             ----HHHHHHHhCCCCEEEecCccCCCCCcCCCC--CHHHHHHHHHc--CCCEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence                34566788999999531  1 111  1122  13566666664  3344332    3443 578888889999866


Q ss_pred             ee
Q 012949          377 DC  378 (452)
Q Consensus       377 D~  378 (452)
                      =+
T Consensus       208 ~V  209 (229)
T 3q58_A          208 TV  209 (229)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=95.89  E-value=1.4  Score=42.81  Aligned_cols=235  Identities=12%  Similarity=0.048  Sum_probs=141.8

Q ss_pred             CccEEEeCCccccCCCCCCC---CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh---cc-CCce
Q 012949          125 RFVKIVEVGPRDGLQNEKNT---VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD---LE-GARL  197 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~---~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~---~~-~~~l  197 (452)
                      +.|+|-++++-+|.-..-..   -+.++.++.++.+...|.|.||+-......    ..+.+++.+.++.   .. +..+
T Consensus        26 ~~v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~----~~~~~~v~~~l~~lr~~~~~~Pi  101 (276)
T 3o1n_A           26 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFAN----VTTAESVLEAAGAIREIITDKPL  101 (276)
T ss_dssp             CCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT----TTCHHHHHHHHHHHHHHCCSSCE
T ss_pred             eEEEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc----cCcHHHHHHHHHHHHHhcCCCCE
Confidence            45888888887775433222   245666677777777999999997543221    1233445554443   22 3322


Q ss_pred             eEEecchhhhhhhhhh-hhhccchhhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSIL-FQQCHASVISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~-~~~~~~~~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      -+-++...+     =| |. ..++       .+.+-++.+++.| ++.|.|-....+               +.+.++++
T Consensus       102 I~T~Rt~~e-----GG~~~-~~~~-------~~~~ll~~~l~~g~~dyIDvEl~~~~---------------~~~~~l~~  153 (276)
T 3o1n_A          102 LFTFRSAKE-----GGEQA-LTTG-------QYIDLNRAAVDSGLVDMIDLELFTGD---------------DEVKATVG  153 (276)
T ss_dssp             EEECCBGGG-----TCSBC-CCHH-------HHHHHHHHHHHHTCCSEEEEEGGGCH---------------HHHHHHHH
T ss_pred             EEEEEEhhh-----CCCCC-CCHH-------HHHHHHHHHHhcCCCCEEEEECcCCH---------------HHHHHHHH
Confidence            221222110     00 10 0100       1334667888889 899999765433               34456778


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH---hCCCccEEE
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA---VVPVEKLAV  352 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~---~~p~~~l~v  352 (452)
                      .|++.|.+|.+..=. |    ....+.+.+.+..+.+.+.|||.+.|+=+  .-++.++.+++....+   .++..|+-.
T Consensus       154 ~a~~~~~kvI~S~Hd-f----~~tP~~~el~~~~~~~~~~GaDIvKia~~--a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa  226 (276)
T 3o1n_A          154 YAHQHNVAVIMSNHD-F----HKTPAAEEIVQRLRKMQELGADIPKIAVM--PQTKADVLTLLTATVEMQERYADRPIIT  226 (276)
T ss_dssp             HHHHTTCEEEEEEEE-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCCSCCEE
T ss_pred             HHHhCCCEEEEEeec-C----CCCcCHHHHHHHHHHHHHcCCCEEEEEec--CCChHHHHHHHHHHHHHHhcCCCCCEEE
Confidence            888999888632221 2    22224578888999999999999999755  3567888888776543   234444443


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      -  +.-.++.-.-+.+-..|-...-+++   |+ |-|   .|+.+++++-..|+.
T Consensus       227 ~--~MG~~G~~SRi~~~~~GS~vTf~~l---~~-~sA---PGQl~~~~l~~~l~~  272 (276)
T 3o1n_A          227 M--SMSKTGVISRLAGEVFGSAATFGAV---KK-ASA---PGAISVADLRTVLTI  272 (276)
T ss_dssp             E--ECSGGGTHHHHCHHHHTCCEEECBS---SC-CSS---TTCCBHHHHHHHHHH
T ss_pred             E--ECCCchhhHHHHHHHhCCceEecCC---CC-CCC---CCCCCHHHHHHHHHH
Confidence            3  2333444556666678888888887   33 334   559999999887764

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=95.87  E-value=0.17  Score=47.88  Aligned_cols=153  Identities=19%  Similarity=0.130  Sum_probs=98.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +.++-+++++.|.+.|++.||++.-. +       +..+.++.++ ..++..+.+-+.-                     
T Consensus        36 ~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~~~igagtvl---------------------   86 (225)
T 1mxs_A           36 REEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTVL---------------------   86 (225)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECCC---------------------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHhCcccEEeeCeEe---------------------
Confidence            55667899999999999999998532 1       2234445443 3444333221110                     


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          ..+.++.|+++|++.|+..  -.+                  .++++.++++|.....      |     -.+++.
T Consensus        87 ----~~d~~~~A~~aGAd~v~~p--~~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e  131 (225)
T 1mxs_A           87 ----DRSMFAAVEAAGAQFVVTP--GIT------------------EDILEAGVDSEIPLLP------G-----ISTPSE  131 (225)
T ss_dssp             ----SHHHHHHHHHHTCSSEECS--SCC------------------HHHHHHHHHCSSCEEC------E-----ECSHHH
T ss_pred             ----eHHHHHHHHHCCCCEEEeC--CCC------------------HHHHHHHHHhCCCEEE------e-----eCCHHH
Confidence                1248899999999999743  222                  2567888999987641      1     123444


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHH-H--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEEe
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD  377 (452)
                      +    ..+.++|+|.|.+       .|.. +  .+.++.++..+|.+++-.    .=|.-..|.-.-+. +|++.|=
T Consensus       132 ~----~~A~~~Gad~vk~-------FPa~~~~G~~~lk~i~~~~~~ipvva----iGGI~~~N~~~~l~~~Ga~~v~  193 (225)
T 1mxs_A          132 I----MMGYALGYRRFKL-------FPAEISGGVAAIKAFGGPFGDIRFCP----TGGVNPANVRNYMALPNVMCVG  193 (225)
T ss_dssp             H----HHHHTTTCCEEEE-------TTHHHHTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHHSTTBCCEE
T ss_pred             H----HHHHHCCCCEEEE-------ccCccccCHHHHHHHHhhCCCCeEEE----ECCCCHHHHHHHHhccCCEEEE
Confidence            3    4456889999888       4432 3  577888888887666533    23555568888888 6888664

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=95.85  E-value=0.22  Score=49.36  Aligned_cols=219  Identities=14%  Similarity=0.082  Sum_probs=128.0

Q ss_pred             HHHHHHHCCCCEEEEe-cCC--CCCcccc--cCCHHHHHHHHHhccCC--ceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          153 LIRRLVSSGLPVVEAT-SFV--SPKWVPQ--LADARDVMEAVRDLEGA--RLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG-~~~--s~~~~p~--~~D~e~v~~~i~~~~~~--~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      -++.+.++||+.|=++ +..  +....|-  .-..++++..++.+...  .+++++.. .      .+|.. +.++.   
T Consensus        30 sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~-d------~Gyg~-~~~v~---   98 (302)
T 3fa4_A           30 SARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADA-D------TGYGG-PIMVA---   98 (302)
T ss_dssp             HHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEEC-T------TTTSS-HHHHH---
T ss_pred             HHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEEC-C------CCCCC-HHHHH---
Confidence            3667888999999984 221  1011121  13456777777765432  44544422 1      34553 33332   


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC-CCC
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIP  301 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~-r~d  301 (452)
                           +.++...++|+.-|+|-..+.+-   |...+-=.+.++..++++.+++.+++.|.++.. +..+    |+- ...
T Consensus        99 -----~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I-~ART----Da~~~~g  168 (302)
T 3fa4_A           99 -----RTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVV-IART----DSLQTHG  168 (302)
T ss_dssp             -----HHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEE-EEEE----CCHHHHC
T ss_pred             -----HHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEE-EEEe----cccccCC
Confidence                 26777888999999999877542   111111247899999998777776666654321 1111    110 113


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE--EeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV--HLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v--H~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .+...+=++...++|||.|.+.   |.-+++++.++.+.+.    ..|+-+  -.......-...  .--++|+++|-..
T Consensus       169 ldeAi~Ra~ay~eAGAD~ifi~---g~~~~~ei~~~~~~~~----~~Pl~~n~~~~g~~p~~~~~--eL~~lGv~~v~~~  239 (302)
T 3fa4_A          169 YEESVARLRAARDAGADVGFLE---GITSREMARQVIQDLA----GWPLLLNMVEHGATPSISAA--EAKEMGFRIIIFP  239 (302)
T ss_dssp             HHHHHHHHHHHHTTTCSEEEET---TCCCHHHHHHHHHHTT----TSCEEEECCTTSSSCCCCHH--HHHHHTCSEEEET
T ss_pred             HHHHHHHHHHHHHcCCCEEeec---CCCCHHHHHHHHHHhc----CCceeEEEecCCCCCCCCHH--HHHHcCCCEEEEc
Confidence            4566667777889999999885   4567888877766653    223333  222222211222  3335699988776


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      ...+        |+-..++++.+..|+..|
T Consensus       240 ~~~~--------raa~~A~~~~~~~i~~~g  261 (302)
T 3fa4_A          240 FAAL--------GPAVAAMREAMEKLKRDG  261 (302)
T ss_dssp             TTTH--------HHHHHHHHHHHHHHHHHS
T ss_pred             hHHH--------HHHHHHHHHHHHHHHHcC
Confidence            6655        566788888888887644

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=95.80  E-value=0.21  Score=50.36  Aligned_cols=183  Identities=13%  Similarity=0.103  Sum_probs=114.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC-----CCCc---cc-----cc-------CCHHHHHHHHHh-ccCCceeEEecc
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFV-----SPKW---VP-----QL-------ADARDVMEAVRD-LEGARLPVLTPN  203 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~-----s~~~---~p-----~~-------~D~e~v~~~i~~-~~~~~l~~l~~~  203 (452)
                      =+.+.-.++++...++|.+.+-.+.+-     +|..   .+     +.       .-.++-+..+++ .....+..++-.
T Consensus        32 gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~  111 (349)
T 2wqp_A           32 GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL  111 (349)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee
Confidence            388999999999999999999998542     3321   11     00       001222233322 112233333311


Q ss_pred             hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949          204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  283 (452)
Q Consensus       204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~  283 (452)
                      .                        ..++++.+.+.+++.+.|...  +.              .+ ..+++++-+.|.+
T Consensus       112 ~------------------------d~~svd~l~~~~v~~~KI~S~--~~--------------~n-~~LL~~va~~gkP  150 (349)
T 2wqp_A          112 F------------------------SRAAALRLQRMDIPAYKIGSG--EC--------------NN-YPLIKLVASFGKP  150 (349)
T ss_dssp             C------------------------SHHHHHHHHHHTCSCEEECGG--GT--------------TC-HHHHHHHHTTCSC
T ss_pred             C------------------------CHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCe
Confidence            1                        124777777888888887642  11              11 1445666678999


Q ss_pred             EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHH--HHHHHHhCCCccEEEEeCCCcCcH
Q 012949          284 VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       284 V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~l--i~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      |-  |+.       +..+.+.+...++.+.+.|.+.+-+-=+.++=+|....+|  |..+++.+|..+|++=-|- .|  
T Consensus       151 vi--Lst-------Gmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt-~G--  218 (349)
T 2wqp_A          151 II--LST-------GMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHT-LD--  218 (349)
T ss_dssp             EE--EEC-------TTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCS-SS--
T ss_pred             EE--EEC-------CCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCC-Cc--
Confidence            86  442       4568899999999999889854433235555555555444  7888999966689885554 34  


Q ss_pred             HHHHHHHHHcCCCEEeecc
Q 012949          362 LPNILISLQMGISTVDCSV  380 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+-+++|+.+||++|+.=+
T Consensus       219 ~~~~~AAvAlGA~iIEkH~  237 (349)
T 2wqp_A          219 NYACLGAVALGGSILERHF  237 (349)
T ss_dssp             SHHHHHHHHHTCCEEEEEB
T ss_pred             HHHHHHHHHhCCCEEEeCC
Confidence            7888999999999886543

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=95.79  E-value=0.1  Score=49.70  Aligned_cols=211  Identities=11%  Similarity=0.072  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHHhccCCceeE-Eecchhhhhhhhhhhhhccchhhhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVRDLEGARLPV-LTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~~~~~~~l~~-l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      -.+.++.+.++|++.||+....    +|.+.  +.+++.+.+++ .++++.+ ..+...      ..+.....+.-+...
T Consensus        19 ~~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~------~~l~~~d~~~r~~~~   87 (294)
T 3vni_A           19 YKYYIEKVAKLGFDILEIAASP----LPFYSDIQINELKACAHG-NGITLTVGHGPSAE------QNLSSPDPDIRKNAK   87 (294)
T ss_dssp             HHHHHHHHHHHTCSEEEEESTT----GGGCCHHHHHHHHHHHHH-TTCEEEEEECCCGG------GCTTCSCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCcc----cCCcCHHHHHHHHHHHHH-cCCeEEEeecCCCC------cCCCCCCHHHHHHHH
Confidence            3566777888999999998532    12221  22333333332 4566655 223211      001100000000000


Q ss_pred             hccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                      ....+.++.|.+.|++.|.+.. +.....  ..-+.+    .+...+.+.++.++|++.|+++.  +...-..+...-.+
T Consensus        88 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lEn~~~~~~~~~~~  163 (294)
T 3vni_A           88 AFYTDLLKRLYKLDVHLIGGALYSYWPID--YTKTIDKKGDWERSVESVREVAKVAEACGVDFC--LEVLNRFENYLINT  163 (294)
T ss_dssp             HHHHHHHHHHHHHTCCEEEESTTSCSSCC--TTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE--EECCCTTTCSSCCS
T ss_pred             HHHHHHHHHHHHhCCCeeeccccCCCCCc--CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEecCcccCcccCC
Confidence            0123467888889999998532 211000  000123    34555666677888999998754  33211001111236


Q ss_pred             HHHHHHHHHHHHHCCcCEEE-EcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          302 PSKVAYVAKELHDMGCFEIS-LGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~-L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ++.+.++++.+   +.+.+. .-|+.=...- ....+.++.+.   + --..+|.+|..+                   .
T Consensus       164 ~~~~~~l~~~v---~~~~vg~~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~r-------------------~  217 (294)
T 3vni_A          164 AQEGVDFVKQV---DHNNVKVMLDTFHMNIEEDSIGGAIRTAG---S-YLGHLHTGECNR-------------------K  217 (294)
T ss_dssp             HHHHHHHHHHH---CCTTEEEEEEHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCTTS-------------------C
T ss_pred             HHHHHHHHHHc---CCCCEEEEEEhhhhHHcCCCHHHHHHHhh---h-hEeEEEeCCCCC-------------------C
Confidence            67777777655   322222 2265221111 12233333332   2 236799999521                   0


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                               .| +.|..+.+.++..|+..|++
T Consensus       218 ---------~p-G~G~id~~~~~~~L~~~gy~  239 (294)
T 3vni_A          218 ---------VP-GRGRIPWVEIGEALADIGYN  239 (294)
T ss_dssp             ---------CT-TSSSCCHHHHHHHHHHTTCC
T ss_pred             ---------CC-CCCCcCHHHHHHHHHHhCCC
Confidence                     12 26889999999999987665

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.78  E-value=0.31  Score=46.16  Aligned_cols=169  Identities=14%  Similarity=0.093  Sum_probs=98.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      .+.+...++++...+.|...|++++             .+.++.+++..+..  ++.-+++       .|..+. -.|. 
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~-------------~~~i~~ir~~v~~P--vig~~k~-------d~~~~~-~~I~-   88 (232)
T 3igs_A           33 DKPEIVAAMALAAEQAGAVAVRIEG-------------IDNLRMTRSLVSVP--IIGIIKR-------DLDESP-VRIT-   88 (232)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES-------------HHHHHHHHTTCCSC--EEEECBC-------CCSSCC-CCBS-
T ss_pred             CCcchHHHHHHHHHHCCCeEEEECC-------------HHHHHHHHHhcCCC--EEEEEee-------cCCCcc-eEeC-
Confidence            4578899999999999999999964             13456666544433  2211111       000000 0000 


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~--Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                         -+.++++.++++|+|.|.+-...  ++               +.+.+++++++++|+.+.+.+           .+.
T Consensus        89 ---~~~~~i~~~~~~Gad~V~l~~~~~~~p---------------~~l~~~i~~~~~~g~~v~~~v-----------~t~  139 (232)
T 3igs_A           89 ---PFLDDVDALAQAGAAIIAVDGTARQRP---------------VAVEALLARIHHHHLLTMADC-----------SSV  139 (232)
T ss_dssp             ---CSHHHHHHHHHHTCSEEEEECCSSCCS---------------SCHHHHHHHHHHTTCEEEEEC-----------CSH
T ss_pred             ---ccHHHHHHHHHcCCCEEEECccccCCH---------------HHHHHHHHHHHHCCCEEEEeC-----------CCH
Confidence               12347888999999988765432  12               234577788888998775321           123


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc--C-Cc-C-CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          303 SKVAYVAKELHDMGCFEISLG--D-TI-G-VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~--D-T~-G-~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                          +.++.+.++|+|.|.+.  + |. + ...|  -.++++.+++.  .+++-.    .-|.. ..+...++++||+.|
T Consensus       140 ----eea~~a~~~Gad~Ig~~~~g~t~~~~~~~~--~~~~i~~l~~~--~ipvIA----~GGI~t~~d~~~~~~~GadgV  207 (232)
T 3igs_A          140 ----DDGLACQRLGADIIGTTMSGYTTPDTPEEP--DLPLVKALHDA--GCRVIA----EGRYNSPALAAEAIRYGAWAV  207 (232)
T ss_dssp             ----HHHHHHHHTTCSEEECTTTTSSSSSCCSSC--CHHHHHHHHHT--TCCEEE----ESCCCSHHHHHHHHHTTCSEE
T ss_pred             ----HHHHHHHhCCCCEEEEcCccCCCCCCCCCC--CHHHHHHHHhc--CCcEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence                34567788999999531  1 11 0 1112  23556666654  334432    23553 578888899999866


Q ss_pred             ee
Q 012949          377 DC  378 (452)
Q Consensus       377 D~  378 (452)
                      =+
T Consensus       208 ~V  209 (232)
T 3igs_A          208 TV  209 (232)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=95.76  E-value=0.16  Score=48.04  Aligned_cols=154  Identities=21%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.|++.||++.-.        .+..+.++.++ +.++..+.+-+.-                    
T Consensus        26 ~~~~~~~~~~~al~~gGv~~iel~~k~--------~~~~~~i~~l~~~~~~l~vgaGtvl--------------------   77 (224)
T 1vhc_A           26 DNADDILPLADTLAKNGLSVAEITFRS--------EAAADAIRLLRANRPDFLIAAGTVL--------------------   77 (224)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS--------TTHHHHHHHHHHHCTTCEEEEESCC--------------------
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeccC--------chHHHHHHHHHHhCcCcEEeeCcEe--------------------
Confidence            355667899999999999999998532        12344455444 3343332221110                    


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                           ..+.++.|+++|++.|+..  -.+                  .++++.+++.|..+..      |     -.+++
T Consensus        78 -----~~d~~~~A~~aGAd~v~~p--~~d------------------~~v~~~ar~~g~~~i~------G-----v~t~~  121 (224)
T 1vhc_A           78 -----TAEQVVLAKSSGADFVVTP--GLN------------------PKIVKLCQDLNFPITP------G-----VNNPM  121 (224)
T ss_dssp             -----SHHHHHHHHHHTCSEEECS--SCC------------------HHHHHHHHHTTCCEEC------E-----ECSHH
T ss_pred             -----eHHHHHHHHHCCCCEEEEC--CCC------------------HHHHHHHHHhCCCEEe------c-----cCCHH
Confidence                 1248999999999999533  222                  3566888999987642      2     12344


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHH-H--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD  377 (452)
                      .+    ..+.++|+|.|.+       .|.. +  .+.++.+++.+|.+++..    .=|.-..|.-.-+++ |+..|-
T Consensus       122 e~----~~A~~~Gad~vk~-------Fpa~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~N~~~~l~agga~~v~  184 (224)
T 1vhc_A          122 AI----EIALEMGISAVKF-------FPAEASGGVKMIKALLGPYAQLQIMP----TGGIGLHNIRDYLAIPNIVACG  184 (224)
T ss_dssp             HH----HHHHHTTCCEEEE-------TTTTTTTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHTSTTBCCEE
T ss_pred             HH----HHHHHCCCCEEEE-------eeCccccCHHHHHHHHhhCCCCeEEE----ECCcCHHHHHHHHhcCCCEEEE
Confidence            43    4456789998888       2211 1  467788888777656533    235555688888888 666443

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=95.73  E-value=0.27  Score=45.54  Aligned_cols=208  Identities=20%  Similarity=0.135  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++-.++++.+.+.|++.|++.-.....  +......+.++.+++..+.  ++++-+.-                      
T Consensus        33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~--~~~~~~~~~i~~i~~~~~i--pvi~~g~i----------------------   86 (253)
T 1h5y_A           33 GDPVEMAVRYEEEGADEIAILDITAAP--EGRATFIDSVKRVAEAVSI--PVLVGGGV----------------------   86 (253)
T ss_dssp             ECHHHHHHHHHHTTCSCEEEEECCCCT--TTHHHHHHHHHHHHHHCSS--CEEEESSC----------------------
T ss_pred             ccHHHHHHHHHHcCCCEEEEEeCCccc--cCCcccHHHHHHHHHhcCC--CEEEECCC----------------------
Confidence            456889999999999999986432110  1000112333444432233  32221110                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEee------ecCCCCCC-
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCV------VGCPVEGA-  299 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~------~g~p~~~r-  299 (452)
                      ...++++.++++|++.|.+...                .+.....+.+.+++.|.+ +...+..-      .-..-.+. 
T Consensus        87 ~~~~~~~~~~~~Gad~V~i~~~----------------~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~  150 (253)
T 1h5y_A           87 RSLEDATTLFRAGADKVSVNTA----------------AVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGRE  150 (253)
T ss_dssp             CSHHHHHHHHHHTCSEEEESHH----------------HHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTE
T ss_pred             CCHHHHHHHHHcCCCEEEEChH----------------HhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCee
Confidence            0124778889999999987632                111111233444555642 32222210      00000010 


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE--cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL--GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                      .+.....+.++.+.++|++.|.+  .+..|..... -.++++.+++..+ +++..=    -|.. ..+...++++||+.|
T Consensus       151 ~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~~-~pvia~----GGi~~~~~~~~~~~~Ga~~v  224 (253)
T 1h5y_A          151 ATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSVR-IPVIAS----GGAGRVEHFYEAAAAGADAV  224 (253)
T ss_dssp             EEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHCS-SCEEEE----SCCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcC-CHHHHHHHHHhcC-CCEEEe----CCCCCHHHHHHHHHcCCcHH
Confidence            00112345567778889999888  3433332111 1345566666543 344442    4554 378888889999865


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      =+.=.=+.         +..+++++...|+..|++.
T Consensus       225 ~vgsal~~---------~~~~~~~~~~~l~~~g~~~  251 (253)
T 1h5y_A          225 LAASLFHF---------RVLSIAQVKRYLKERGVEV  251 (253)
T ss_dssp             EESHHHHT---------TSSCHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHc---------CCCCHHHHHHHHHHcCCCC
Confidence            43211111         1245888988998888753

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=95.61  E-value=0.11  Score=53.93  Aligned_cols=199  Identities=16%  Similarity=0.061  Sum_probs=117.5

Q ss_pred             hHHHHHHcCCCEEEEEecCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee--cC-----------
Q 012949          232 GFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GC-----------  294 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~S-d~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~--g~-----------  294 (452)
                      .++...++|+..|+|-+.+. +-   |...+-=.+.++.+++++.+...+...|.+..+ +..+-  +.           
T Consensus       165 tVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vI-iARTDA~~a~l~~s~~d~rd  243 (433)
T 3eol_A          165 IMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLI-VARTDAEAAKLLTSDIDERD  243 (433)
T ss_dssp             HHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEE-EEEECTTTCCEESCCCSTTT
T ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEE-EEEcCCccccccccCccccc
Confidence            67888999999999999875 31   111111137899999998777777766755321 11110  00           


Q ss_pred             -----CCCC---------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc
Q 012949          295 -----PVEG---------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       295 -----p~~~---------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                           .+..         +...+...+=++...+ |||.|.+ .+ +.-+++++.++.+.++..+|...+.+-+--.+..
T Consensus       244 ~~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~-e~-~~~~~eei~~f~~~v~~~~P~~~L~~~~sPsfnw  320 (433)
T 3eol_A          244 QPFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWM-ET-SKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNW  320 (433)
T ss_dssp             GGGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEE-CC-SSCCHHHHHHHHHHHHHHSTTCCEEEECCSSSCH
T ss_pred             ccceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEE-eC-CCCCHHHHHHHHHHhcccCCCcccccCCCCCCcc
Confidence                 0000         1234555555556667 9999988 22 3458999999999999888875566533222221


Q ss_pred             ----H---HHHH-HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC
Q 012949          361 ----S---LPNI-LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR  432 (452)
Q Consensus       361 ----A---~ANa-LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~  432 (452)
                          .   +.+- -.--++|+.+|-.++.++        ++-+.++.+++..+...|....++    .+-.++..+..|+
T Consensus       321 ~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~--------raa~~A~~~~a~~i~~~G~~ayve----~Q~~e~~~~~~g~  388 (433)
T 3eol_A          321 KKNLDDATIAKFQRELGAMGYKFQFITLAGF--------HQLNYGMFELARGYKDRQMAAYSE----LQQAEFAAEADGY  388 (433)
T ss_dssp             HHHSCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHHHHH----HHHHHHHHGGGTC
T ss_pred             cccCChhHHhHHHHHHHHcCCeEEEeCcHHH--------HHHHHHHHHHHHHHHHcCCHHHHH----HHHHhhhhhccCc
Confidence                1   1121 223358999999998887        778899999998887655322122    2222333456788


Q ss_pred             CCCCCcccccchhh
Q 012949          433 PSGSKTAIALNRIA  446 (452)
Q Consensus       433 ~~p~~~pi~G~~vf  446 (452)
                      ..-.++-.+|.+-|
T Consensus       389 ~~~~hq~~~g~~y~  402 (433)
T 3eol_A          389 TATKHQREVGTGYF  402 (433)
T ss_dssp             CCC--------CHH
T ss_pred             eeeecccccccchH
Confidence            88777777776655

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=95.56  E-value=0.1  Score=50.85  Aligned_cols=178  Identities=12%  Similarity=0.065  Sum_probs=104.1

Q ss_pred             EEEeCCc---cccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEe
Q 012949          128 KIVEVGP---RDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT  201 (452)
Q Consensus       128 ~I~D~TL---RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~  201 (452)
                      .|+++|.   .||.+.    .+.+..++.++.+.+.|.+.|++|.-++..     .+.+.+...++.+   .++.+++=+
T Consensus        15 EilN~Tpdsf~dg~~~----~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~-----eE~~rv~~vi~~l~~~~~~pisIDT   85 (271)
T 2yci_X           15 ERINGMFKDIREAILN----KDPRPIQEWARRQAEKGAHYLDVNTGPTAD-----DPVRVMEWLVKTIQEVVDLPCCLDS   85 (271)
T ss_dssp             EEEETTSHHHHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECCSCSS-----CHHHHHHHHHHHHHHHCCCCEEEEC
T ss_pred             EecCCChhhHHHhhhh----CCHHHHHHHHHHHHHCCCCEEEEcCCcCch-----hHHHHHHHHHHHHHHhCCCeEEEeC
Confidence            3677883   345553    566889999999999999999999765432     1234444444433   344444322


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                      ..                          .+-+++|+++  |.+.|.=.....                +++.+++..+++
T Consensus        86 ~~--------------------------~~v~~aal~a~~Ga~iINdvs~~~----------------d~~~~~~~~~a~  123 (271)
T 2yci_X           86 TN--------------------------PDAIEAGLKVHRGHAMINSTSADQ----------------WKMDIFFPMAKK  123 (271)
T ss_dssp             SC--------------------------HHHHHHHHHHCCSCCEEEEECSCH----------------HHHHHHHHHHHH
T ss_pred             CC--------------------------HHHHHHHHHhCCCCCEEEECCCCc----------------cccHHHHHHHHH
Confidence            22                          2367888888  988876322210                334566677888


Q ss_pred             CCCcEEEEEEeeecCCCCCCCC----HHHHHHHHHHHHHCCcC--EEEEcCCcCC--CcHHHHHHHHHHHHH---hC-CC
Q 012949          280 LSIPVRGYVSCVVGCPVEGAIP----PSKVAYVAKELHDMGCF--EISLGDTIGV--GTPGTVVPMLEAVMA---VV-PV  347 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~~r~d----~e~l~~~a~~l~~~Gad--~I~L~DT~G~--~~P~~v~~li~~l~~---~~-p~  347 (452)
                      .|..+.  ++.. . +.....+    .+++.+..+.+.++|++  .|.|==.+|.  -+.++-.++++.++.   .. |+
T Consensus       124 ~~~~vv--~m~~-d-~~G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~  199 (271)
T 2yci_X          124 YEAAII--GLTM-N-EKGVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPA  199 (271)
T ss_dssp             HTCEEE--EESC-B-TTBCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSC
T ss_pred             cCCCEE--EEec-C-CCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCC
Confidence            898764  4432 0 0111233    45667777888899986  4766223333  145566666666653   34 55


Q ss_pred             ccEEEEeCC-CcCc
Q 012949          348 EKLAVHLHD-TYGQ  360 (452)
Q Consensus       348 ~~l~vH~Hn-d~Gl  360 (452)
                      .|+-+=.+| .+|+
T Consensus       200 ~p~l~G~Snksfg~  213 (271)
T 2yci_X          200 PRTVLGLSNVSQKC  213 (271)
T ss_dssp             CEEEEEGGGGGTTC
T ss_pred             CCEEEeeCccccCC
Confidence            566664444 2453

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=95.54  E-value=0.17  Score=48.29  Aligned_cols=232  Identities=16%  Similarity=0.066  Sum_probs=113.3

Q ss_pred             CCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcc-cccCCH---HHHHHHHHhccCCcee
Q 012949          123 IPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWV-PQLADA---RDVMEAVRDLEGARLP  198 (452)
Q Consensus       123 ~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~-p~~~D~---e~v~~~i~~~~~~~l~  198 (452)
                      .|.++-|..-|+|+.       ++.++   .++.+.++|++.||+.......+. +.-.+.   +++.+.+++ .++++.
T Consensus        15 ~~~~~gi~~~~~~~~-------~~~~~---~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~   83 (295)
T 3cqj_A           15 KQIPLGIYEKALPAG-------ECWLE---RLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVE-TGVRVP   83 (295)
T ss_dssp             -CCCEEEEGGGSCCC-------SCHHH---HHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHH-HCCEEE
T ss_pred             ccccceeeeecCCCC-------CCHHH---HHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHH-cCCeEE
Confidence            445566777777642       34444   556677899999999764321000 000122   233333332 356665


Q ss_pred             EEe-cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          199 VLT-PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       199 ~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ++. +...     .+.+.......-+.......+.++.|.+.|++.|.+... .. ..........+...+.+.++.++|
T Consensus        84 ~~~~~~~~-----~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~-~~~~~~~~~~~~~~~~l~~l~~~a  156 (295)
T 3cqj_A           84 SMCLSAHR-----RFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGY-DV-YYQEANNETRRRFRDGLKESVEMA  156 (295)
T ss_dssp             EEEEGGGG-----TSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCC-SC-SSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCccc-----CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCC-CC-CcCcCHHHHHHHHHHHHHHHHHHH
Confidence            543 2110     000110000000000001234778888899999887521 11 000000012345566677788899


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEE-cCCcC----CCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISL-GDTIG----VGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L-~DT~G----~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      ++.|+++.  +...   +...-.+++.+.++++.+   +.+.+.+ -|+.=    -..|   .+.++.+..+    ...+
T Consensus       157 ~~~Gv~l~--lEn~---~~~~~~~~~~~~~l~~~v---~~~~vg~~~D~~h~~~~g~d~---~~~l~~~~~~----i~~v  221 (295)
T 3cqj_A          157 SRAQVTLA--MEIM---DYPLMNSISKALGYAHYL---NNPWFQLYPDIGNLSAWDNDV---QMELQAGIGH----IVAV  221 (295)
T ss_dssp             HHHTCEEE--EECC---SSGGGCSHHHHHHHHHHH---CCTTEEEECBHHHHHSSSCCH---HHHHHHTGGG----BCCE
T ss_pred             HHhCCEEE--EeeC---CCcccCCHHHHHHHHHhc---CCCCeEEEeccchHhhcCCCH---HHHHHHhccc----eEEE
Confidence            99998754  3321   111123567777776655   3332322 26521    1123   2333333222    3568


Q ss_pred             EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          353 HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       353 H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      |++|..+            |.+  .  -..+|        .|..+.+.++..|+..|++
T Consensus       222 Hl~D~~~------------g~~--~--~~p~G--------~G~id~~~~~~~L~~~gy~  256 (295)
T 3cqj_A          222 HVKDTKP------------GVF--K--NVPFG--------EGVVDFERCFETLKQSGYC  256 (295)
T ss_dssp             EECEEET------------TEE--E--EECTT--------SSSCCHHHHHHHHHHTTCC
T ss_pred             EeecCCC------------Ccc--C--CcCCC--------CCccCHHHHHHHHHHCCCc
Confidence            9998731            211  1  12233        4789999999999987664

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=95.52  E-value=0.2  Score=46.61  Aligned_cols=208  Identities=12%  Similarity=0.008  Sum_probs=104.9

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHH
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ  231 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~  231 (452)
                      +.++.+.++|++.||+..+.       -.+.+++.+.+++ .++++.++................ ..+.-+.......+
T Consensus        19 ~~l~~~~~~G~~~vEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~   89 (260)
T 1k77_A           19 ERFAAARKAGFDAVEFLFPY-------NYSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSA-LPGREHEAHADIDL   89 (260)
T ss_dssp             GHHHHHHHHTCSEEECSCCT-------TSCHHHHHHHHHH-TTCEEEEEECCCCCGGGTCSCSTT-CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEecCCC-------CCCHHHHHHHHHH-cCCceEEEecCCcccccccCCCCC-ChhHHHHHHHHHHH
Confidence            34566677899999997531       1245566665554 356665543211000000000000 00000000011234


Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHH----HHHHHHHHHHHHHHhCCCcEEEEEEeeecC--CCCCCCCHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIE----DSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--PVEGAIPPSKV  305 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e----~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--p~~~r~d~e~l  305 (452)
                      .++.|.+.|++.|.+.....+      .+.+.+    ...+.+.++.++|++.|+++.  +...-..  |...-.+++.+
T Consensus        90 ~i~~a~~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~~~~~~~~~~~~~~~~~  161 (260)
T 1k77_A           90 ALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRIL--VEALSPGVKPHYLFSSQYQA  161 (260)
T ss_dssp             HHHHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCSHHHH
T ss_pred             HHHHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCCccCCCcCccCCHHHH
Confidence            778888999999987543211      112333    455666677788999998754  3321000  01112456666


Q ss_pred             HHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          306 AYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       306 ~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      .++++.+   +.+  .+++ |+.=...-.  .+....+++ +.+--..+|+||..|                        
T Consensus       162 ~~l~~~~---~~~~~g~~~-D~~h~~~~~--~d~~~~l~~-~~~~i~~vH~~D~~~------------------------  210 (260)
T 1k77_A          162 LAIVEEV---ARDNVFIQL-DTFHAQKVD--GNLTHLIRD-YAGKYAHVQIAGLPD------------------------  210 (260)
T ss_dssp             HHHHHHH---CCTTEEEEE-EHHHHHHHT--CCHHHHHHH-TTTSEEEEEECCTTT------------------------
T ss_pred             HHHHHHh---CCCCEEEEe-eHHHHHhhC--CCHHHHHHH-hhhheeEEEECCCCC------------------------
Confidence            6666554   332  2333 653111100  112233333 333346889998753                        


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                       .+  .+| .|..+.+.++..|+..|++
T Consensus       211 -r~--~~G-~G~id~~~~~~~L~~~gy~  234 (260)
T 1k77_A          211 -RH--EPD-DGEINYPWLFRLFDEVGYQ  234 (260)
T ss_dssp             -CC--CSS-SSSSCHHHHHHHHHHTTCC
T ss_pred             -CC--CCC-CCccCHHHHHHHHHHcCCC
Confidence             11  122 5789999999999987765

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=95.50  E-value=0.2  Score=49.09  Aligned_cols=209  Identities=13%  Similarity=0.101  Sum_probs=117.1

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEecCCCCCcccccCCHHHHHHHHHh-cc--CCceeEEe--
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRD-LE--GARLPVLT--  201 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~--~~~l~~l~--  201 (452)
                      .+|-|+=      +..-+.++..++++...+.  |+..+.+-    |.|+|      ...+.++. -.  ++++...+  
T Consensus        35 ~IDhTlL------~p~~T~~dI~~lc~eA~~~~~~~aaVCV~----p~~V~------~a~~~L~~~gs~~~v~v~tVigF   98 (281)
T 2a4a_A           35 LTDHTFL------DENGTEDDIRELCNESVKTCPFAAAVCVY----PKFVK------FINEKIKQEINPFKPKIACVINF   98 (281)
T ss_dssp             TEEEECC------CTTCCHHHHHHHHHHHHSSSSCCSEEEEC----GGGHH------HHHHHHHHHSSSCCSEEEEEEST
T ss_pred             HcchhcC------CCCCCHHHHHHHHHHHHhccCCccEEEEC----HHHHH------HHHHHhhccCCCCCceEEEEeCC
Confidence            4566653      2245899999999999999  99999873    33333      23444542 12  45655444  


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHH---HHHHHHHHHHHHHH
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIE---DSLVRYRAVAHAAK  278 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e---~~l~~~~~~v~~Ak  278 (452)
                      |.-.           .+.+       .....++.|++.|+++|.+.+.......     ...+   +..+.+..+.+.+.
T Consensus        99 P~G~-----------~~~~-------~Kv~E~~~Av~~GAdEIDmVinig~lks-----g~~~~~~~v~~eI~~v~~a~~  155 (281)
T 2a4a_A           99 PYGT-----------DSME-------KVLNDTEKALDDGADEIDLVINYKKIIE-----NTDEGLKEATKLTQSVKKLLT  155 (281)
T ss_dssp             TTCC-----------SCHH-------HHHHHHHHHHHHTCSEEEEECCHHHHHH-----SHHHHHHHHHHHHHHHHTTCT
T ss_pred             CCCC-----------CCHH-------HHHHHHHHHHHcCCCEEEEecchHhhhC-----CChhHHHHHHHHHHHHHHHhc
Confidence            2111           1111       1234788999999999999987654311     1123   44555544444443


Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHh------CCCccE
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAV------VPVEKL  350 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~------~p~~~l  350 (452)
                        +..+-+-|.      .....+.+.+.+.++.+.++|||-|--.  =+.|.++|+.+.-|.+.+++.      .+. ++
T Consensus       156 --~~~lKVIlE------t~~L~d~e~i~~A~~ia~eaGADfVKTSTGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~-~v  226 (281)
T 2a4a_A          156 --NKILKVIIE------VGELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNN-KI  226 (281)
T ss_dssp             --TSEEEEECC------HHHHCSHHHHHHHHHHHHTTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTT-CC
T ss_pred             --CCceEEEEe------cccCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcccccCCC-Cc
Confidence              333322122      1123456668889999999999988765  233678999998888777532      021 23


Q ss_pred             EEEeCC---CcCcHHHHHHHHH-HcCCCEEeecccCCCC
Q 012949          351 AVHLHD---TYGQSLPNILISL-QMGISTVDCSVAGLGG  385 (452)
Q Consensus       351 ~vH~Hn---d~GlA~ANaLaAl-~aGa~~VD~Sv~GlGe  385 (452)
                      .+-.--   |+--|++-..++. ..|.+|++....=+|-
T Consensus       227 gVKaaGGIrt~e~al~~i~aga~~lG~~w~~~~~~RiGt  265 (281)
T 2a4a_A          227 GLKVSGGISDLNTASHYILLARRFLSSLACHPDNFRIGS  265 (281)
T ss_dssp             EEEEESSCCSHHHHHHHHHHHHHHTC------CCEEEEE
T ss_pred             eEEEeCCCCCHHHHHHHHHHhhhhccccccccCceEEec
Confidence            333221   4444444443333 3677788877776766

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=95.41  E-value=0.35  Score=47.71  Aligned_cols=125  Identities=15%  Similarity=0.109  Sum_probs=83.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.|++.|++.|.+.+...+        ....+.++.+.++++.|+++|+++.+  ++..|...  ..+++.+...++.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs--------~~~~~~l~~i~~v~~~a~~~GlpvIi--e~~~G~~~--~~d~e~i~~aari  197 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGS--------EYEHQSIKNIIQLVDAGMKVGMPTMA--VTGVGKDM--VRDQRYFSLATRI  197 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTS--------TTHHHHHHHHHHHHHHHHTTTCCEEE--EECC------CCSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEECCC--------CcHHHHHHHHHHHHHHHHHcCCEEEE--ECCCCCcc--CCCHHHHHHHHHH
Confidence            688999999998877654322        12457888899999999999998763  22222111  2577778889999


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEe--CCCcCcHHHHHHHHHHcCCCEEee
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL--HDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~--Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.++|||.|-..=|     ++.    ++.+.+..+ +|+-+=.  +-+.--++.+...|+++||+.+-.
T Consensus       198 A~elGAD~VKt~~t-----~e~----~~~vv~~~~-vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~v  256 (295)
T 3glc_A          198 AAEMGAQIIKTYYV-----EKG----FERIVAGCP-VPIVIAGGKKLPEREALEMCWQAIDQGASGVDM  256 (295)
T ss_dssp             HHHTTCSEEEEECC-----TTT----HHHHHHTCS-SCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHhCCCEEEeCCC-----HHH----HHHHHHhCC-CcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEe
Confidence            99999999988743     233    344554443 2444432  223345678888999999985543

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=95.39  E-value=0.61  Score=45.91  Aligned_cols=213  Identities=11%  Similarity=0.042  Sum_probs=125.6

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHH-HCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEe--
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLV-SSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLT--  201 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~-~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~--  201 (452)
                      ++|-|+      .+...+.++..++++.-. +.++..+.+    +|.|+|      ...+.++..    .++++...+  
T Consensus        29 ~IDhTl------L~p~~T~e~I~~lc~eA~~~~~~aaVCV----~P~~V~------~a~~~L~~~~~~~s~v~V~tVigF   92 (297)
T 4eiv_A           29 FFEVAA------LTDGETNESVAAVCKIAAKDPAIVGVSV----RPAFVR------FIRQELVKSAPEVAGIKVCAAVNF   92 (297)
T ss_dssp             TEEEEE------CSTTCCHHHHHHHHHHHHSSSCCSEEEE----CGGGHH------HHHHTGGGTCGGGGGSEEEEEEST
T ss_pred             hcCccC------CCCCCCHHHHHHHHHHHHhhcCcEEEEE----CHHHHH------HHHHHhcccCcCCCCCeEEEEecC
Confidence            567776      233568899999999888 788888887    343443      223444331    345555443  


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS  281 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G  281 (452)
                      |.-.           .+.+       +.....+.|++.|+++|.+.+....+..  +.....+...+.+..+.+.+...-
T Consensus        93 P~G~-----------~~~e-------~K~~Ea~~Av~~GAdEIDmVinig~lk~--~~~g~~~~V~~eI~~v~~a~~~~~  152 (297)
T 4eiv_A           93 PEGT-----------GTPD-------TVSLEAVGALKDGADEIECLIDWRRMNE--NVADGESRIRLLVSEVKKVVGPKT  152 (297)
T ss_dssp             TTCC-----------CCHH-------HHHHHHHHHHHTTCSEEEEECCTHHHHH--CHHHHHHHHHHHHHHHHHHHTTSE
T ss_pred             CCCC-----------CCHH-------HHHHHHHHHHHcCCCEEEeeeeHHHHhc--ccCCcHHHHHHHHHHHHHHhcCCc
Confidence            2211           1111       1234678899999999999988765422  111224455666666666664222


Q ss_pred             CcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhC---C----------
Q 012949          282 IPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVV---P----------  346 (452)
Q Consensus       282 ~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~---p----------  346 (452)
                      ++|.  |      +..-..+.+.+.+.++.+.++|||-|--.--  .|.++|+.++-|.+.+++.+   |          
T Consensus       153 lKVI--l------Et~~Lt~~e~i~~A~~ia~~AGADFVKTSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~  224 (297)
T 4eiv_A          153 LKVV--L------SGGELQGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINR  224 (297)
T ss_dssp             EEEE--C------CSSCCCCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHHHHHCC------------
T ss_pred             eEEE--E------ecccCCcHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHHhcccccccccccccc
Confidence            2332  2      1222345555788999999999998765443  24689999999988887432   1          


Q ss_pred             ----CccEEEEeC----CCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          347 ----VEKLAVHLH----DTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       347 ----~~~l~vH~H----nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                          ...+++-.-    .|+-.|++-..++-+.|-+|++....=+|.
T Consensus       225 ~~~tg~~vgvKAs~GGIrt~e~A~~~i~~~~elG~~wl~~~~fRiGa  271 (297)
T 4eiv_A          225 EGAAVRCIGIKIEVGDVHMAETADFLMQMIFENGPRSIVRDKFRVGG  271 (297)
T ss_dssp             ------CCEEEEECTTCCHHHHHHHHHHHHHHHCGGGCSTTTEEEEE
T ss_pred             ccccCCceeEEecCCCCCCHHHHHHHHHHHHHhCccccCCCceEecc
Confidence                113555554    444455554444445676776666665554

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=95.36  E-value=0.18  Score=52.27  Aligned_cols=199  Identities=15%  Similarity=0.062  Sum_probs=122.7

Q ss_pred             hHHHHHHcCCCEEEEEecCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-------C--
Q 012949          232 GFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-------G--  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~S-d~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-------~--  298 (452)
                      .++..+++|+..|+|-+.+. +-   |...+-=.+.++.++++..+...+...|.+... +..+- ..-+       .  
T Consensus       168 tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vI-iARTD-a~~a~li~s~~d~~  245 (429)
T 1f8m_A          168 LQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVV-IARTD-AEAATLITSDVDER  245 (429)
T ss_dssp             HHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEE-EEEEC-TTTCCEESCCCSTT
T ss_pred             HHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEE-EEEec-hhhhcccccccccc
Confidence            67888999999999999873 31   111111146899999998777777667776321 12110 0000       0  


Q ss_pred             -----------------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC--
Q 012949          299 -----------------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  359 (452)
Q Consensus       299 -----------------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--  359 (452)
                                       ....+...+=++...+ |||.|.+.  .|.-+++++.++.+.++..+|...|.+=+--.+.  
T Consensus       246 d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e--~~~~~~eei~~f~~~v~~~~P~~~La~n~sPsf~w~  322 (429)
T 1f8m_A          246 DQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWME--TGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWK  322 (429)
T ss_dssp             TGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHTTCTTCEEEEECCTTSCHH
T ss_pred             ccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeC--CCCCCHHHHHHHHHHhcccCCCceeecCCCCCCCcc
Confidence                             1223455555555666 89999874  2346899999999999987887545432211111  


Q ss_pred             --cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC
Q 012949          360 --QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       360 --lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                        +.   +++ .-..-++|+.++=.++.++        ++-+.++++++..+...|...   ... .+-.++-.+..|+.
T Consensus       323 ~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~--------raa~~a~~~~a~~~~~~G~~a---y~e-~Q~~e~~~~~~g~~  390 (429)
T 1f8m_A          323 KHLDDATIAKFQKELAAMGFKFQFITLAGF--------HALNYSMFDLAYGYAQNQMSA---YVE-LQEREFAAEERGYT  390 (429)
T ss_dssp             HHCCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHH---HHH-HHHHHHHHGGGTCC
T ss_pred             cccchhhHhHHHHHHHHcCCeEEEECcHHH--------HHHHHHHHHHHHHHHHcCChH---HHH-HhHHHHhhhccCcc
Confidence              00   111 2234469999999999887        777899999998888755311   112 22223333456888


Q ss_pred             CCCCcccccchhhh
Q 012949          434 SGSKTAIALNRIAA  447 (452)
Q Consensus       434 ~p~~~pi~G~~vf~  447 (452)
                      .-.++-.+|.+.|.
T Consensus       391 ~~~hq~~~G~~~~d  404 (429)
T 1f8m_A          391 ATKHQREVGAGYFD  404 (429)
T ss_dssp             TTSHHHHTTHHHHH
T ss_pred             hhhhhhhhccchHH
Confidence            77888888876653

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=95.36  E-value=0.2  Score=49.60  Aligned_cols=199  Identities=12%  Similarity=0.027  Sum_probs=124.8

Q ss_pred             cccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhh
Q 012949          135 RDGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRS  211 (452)
Q Consensus       135 RDG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~  211 (452)
                      +.+.+..+.  ..+.+....+++...+.+-+.|--.+...-++.+   .  .+...++.. ....+++.+.. .      
T Consensus        23 ~~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g---~--~~~~~~~~~A~~~~VPVaLHl-D------   90 (306)
T 3pm6_A           23 RTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYAD---S--LLVRTAASACRAASVPITLHL-D------   90 (306)
T ss_dssp             HHTTCCEEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHT---T--HHHHHHHHHHHHCSSCEEEEE-E------
T ss_pred             HHCCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcc---H--HHHHHHHHHHHHCCCCEEEEc-C------
Confidence            345555543  4788999999999999999977655432111111   0  122222221 11233332210 0      


Q ss_pred             hhhhhccchhhhhhhhccHHhHHHHHHc--------CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949          212 ILFQQCHASVISSNLWVYLQGFEAAIAA--------GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  283 (452)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~~~ie~a~~~--------Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~  283 (452)
                          .+          ...+.+..|+++        |..-|.+=.|.          .+.+|.++.-++++++|+..|+.
T Consensus        91 ----Hg----------~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~----------~p~eENi~~Tk~vv~~ah~~gvs  146 (306)
T 3pm6_A           91 ----HA----------QDPEIIKRAADLSRSETHEPGFDSIMVDMSH----------FSKEENLRLTRELVAYCNARGIA  146 (306)
T ss_dssp             ----EE----------CCHHHHHHHHHTC------CCCSEEEECCTT----------SCHHHHHHHHHHHHHHHHTTTCE
T ss_pred             ----CC----------CCHHHHHHHHHhhhhccCCCCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCe
Confidence                01          023477889998        99988874442          24689999999999999999999


Q ss_pred             EEEEEEeeecCCCC---------CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC----CCc---HHHHHHHHHHHHHhC-C
Q 012949          284 VRGYVSCVVGCPVE---------GAIPPSKVAYVAKELHDMGCFEISLGDTIG----VGT---PGTVVPMLEAVMAVV-P  346 (452)
Q Consensus       284 V~~~l~~~~g~p~~---------~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G----~~~---P~~v~~li~~l~~~~-p  346 (452)
                      |.+.|-..-|.+|.         -.++|+...+++    +.|+|.+.+  ++|    .-.   |.-=.++++.+++.+ +
T Consensus       147 VEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv----~TgvD~LAv--aiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~  220 (306)
T 3pm6_A          147 TEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFV----ATGINWLAP--AFGNVHGNYGPRGVQLDYERLQRINEAVGE  220 (306)
T ss_dssp             EEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHH----TTTCSEECC--CSSCCSSCCCTTCCCCCHHHHHHHHHHHTT
T ss_pred             EEEEeeeeccccCCccccccccccCCCHHHHHHHH----HcCCCEEEE--EcCccccCcCCCCCccCHHHHHHHHHHhCC
Confidence            98777665444432         247888887766    379994443  444    222   222355677777776 3


Q ss_pred             CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          347 VEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       347 ~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+||.+|.  --|..-.....|+..|+.-|+
T Consensus       221 ~vpLVlHG--gSG~p~e~i~~ai~~GV~KiN  249 (306)
T 3pm6_A          221 RVGLVLHG--ADPFTKEIFEKCIERGVAKVN  249 (306)
T ss_dssp             TSEEEECS--CTTCCHHHHHHHHHTTEEEEE
T ss_pred             CCCEEeeC--CCCCCHHHHHHHHHcCCeEEE
Confidence            56777665  457888899999999987553

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=95.30  E-value=0.58  Score=45.60  Aligned_cols=148  Identities=11%  Similarity=0.115  Sum_probs=91.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc---ccccCCHHHHHHHHHhccCCc-eeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKW---VPQLADARDVMEAVRDLEGAR-LPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~---~p~~~D~e~v~~~i~~~~~~~-l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      ..+.++.++-++.|.+.|++.|-+.......+   .|...+..++++.+++.++.. +.....+..              
T Consensus        32 ~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~--------------   97 (304)
T 2qgq_A           32 SRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPD--------------   97 (304)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSSCEEEECCCCGG--------------
T ss_pred             eeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhcCCCcEEEEeeeecc--------------
Confidence            46889999999999999999887643110000   111235677888887665543 111111111              


Q ss_pred             hhhhhhhhccHHhHHHHHHcC--CCEEEEEe-cCChHHHhhhcC--CCHHHHHHHHHHHHHHHHh--CCCcEEEEEEeee
Q 012949          220 SVISSNLWVYLQGFEAAIAAG--AKEVAIFA-SASEAFSKSNIN--CSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVV  292 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~G--i~~V~i~~-s~Sd~~~~~~~~--~s~e~~l~~~~~~v~~Ak~--~G~~V~~~l~~~~  292 (452)
                       .      ...+.++...++|  ++.|.+.+ +.|+.-.+. ++  .+.+    .+.++++.+++  .|+.+...++  +
T Consensus        98 -~------l~~e~l~~l~~~g~~~~~l~i~lqs~s~~vl~~-m~r~~t~e----~~~~~i~~l~~~~~gi~i~~~~I--v  163 (304)
T 2qgq_A           98 -H------LTEEIISAMLELDKVVKYFDVPVQHGSDKILKL-MGRTKSSE----ELKKMLSSIRERFPDAVLRTSII--V  163 (304)
T ss_dssp             -G------CCHHHHHHHHHCTTBCCEEECCCBCSCHHHHHH-TTCCSCHH----HHHHHHHHHHHHCTTCEEEEEEE--E
T ss_pred             -c------CCHHHHHHHHhCCCCccEEEEecccCCHHHHHH-hCCCCCHH----HHHHHHHHHHhhCCCCEEEEEEE--E
Confidence             0      1234678888899  88898876 456644433 33  3444    44456677777  6888876666  5


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEE
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      |.|.+   +.+.+.+.++.+.+.+++.+.+
T Consensus       164 G~PgE---t~ed~~~t~~~l~~l~~~~v~~  190 (304)
T 2qgq_A          164 GFPGE---TEEDFEELKQFVEEIQFDKLGA  190 (304)
T ss_dssp             CCTTC---CHHHHHHHHHHHHHHCCSEEEE
T ss_pred             eCCCC---CHHHHHHHHHHHHHcCCCEEEE
Confidence            66655   4678888888888888876653

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=95.22  E-value=0.14  Score=48.96  Aligned_cols=169  Identities=11%  Similarity=0.003  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .-.+-++.+.+.|++.+.+...- -.++|.+.--..+.+.+++.....+-.++.+.                        
T Consensus        27 ~l~~~i~~~~~~gad~lhvDvmD-G~fvpn~t~G~~~v~~lr~~~~~DvhLMv~~p------------------------   81 (237)
T 3cu2_A           27 QLNEEVTTLLENQINVLHFDIAD-GQFSSLFTVGAIGIKYFPTHCFKDVHLMVRNQ------------------------   81 (237)
T ss_dssp             GHHHHHHHHHHTTCCEEEEEEEB-SSSSSCBCBCTHHHHTSCTTSEEEEEEECSCH------------------------
T ss_pred             cHHHHHHHHHHcCCCEEEEEEec-CccccchhhhHHHHHHHhhhCCCCeEEEEECH------------------------
Confidence            33445788889999987665311 11334443223455666543321111122211                        


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---------CCcEEEEEEeeecCCCCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---------SIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---------G~~V~~~l~~~~g~p~~~r  299 (452)
                       ...++.++++|++.|.+..-..+                .+.+.++.+|+.         |.++.+.+.     |.   
T Consensus        82 -~~~i~~~~~aGAd~itvH~ea~~----------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~-----p~---  136 (237)
T 3cu2_A           82 -LEVAKAVVANGANLVTLQLEQYH----------------DFALTIEWLAKQKTTYANQVYPVLIGACLC-----PE---  136 (237)
T ss_dssp             -HHHHHHHHHTTCSEEEEETTCTT----------------SHHHHHHHHTTCEEEETTEEEECEEEEEEC-----TT---
T ss_pred             -HHHHHHHHHcCCCEEEEecCCcc----------------cHHHHHHHHHhcccccccccCCceEEEEEe-----CC---
Confidence             12688999999999877664433                134677888999         888764442     21   


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHH-
Q 012949          300 IPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQ-  370 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~-  370 (452)
                      ++.+.+.++..     ++|.|.+    +-..|...+....+.|+.+++..+    ..+|++    |-|.-..|+-..++ 
T Consensus       137 Tp~~~l~~~l~-----~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~v----dGGI~~~~~~~~~~~  207 (237)
T 3cu2_A          137 TPISELEPYLD-----QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI----DGSMTLELAKYFKQG  207 (237)
T ss_dssp             SCGGGGTTTTT-----TCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEE----ESSCCHHHHHHHHHS
T ss_pred             ChHHHHHHHhh-----cCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHh
Confidence            22333333322     5887755    233344445666777777777654    235555    78999999999999 


Q ss_pred             -cCCCEE
Q 012949          371 -MGISTV  376 (452)
Q Consensus       371 -aGa~~V  376 (452)
                       +||+.+
T Consensus       208 ~aGad~~  214 (237)
T 3cu2_A          208 THQIDWL  214 (237)
T ss_dssp             SSCCCCE
T ss_pred             CCCCcEE
Confidence             999855

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=95.20  E-value=0.26  Score=51.10  Aligned_cols=199  Identities=13%  Similarity=0.034  Sum_probs=121.7

Q ss_pred             hHHHHHHcCCCEEEEEecCChH----HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecC----CCCC---
Q 012949          232 GFEAAIAAGAKEVAIFASASEA----FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGC----PVEG---  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~----~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~----p~~~---  298 (452)
                      .++..+++|+..|+|-+.+...    |...+-=.+.+++++++..+...++..|.+..+ +..+  .+.    .+..   
T Consensus       172 ~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~I-iARTDa~~a~l~~s~~d~~d  250 (439)
T 3i4e_A          172 LMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVL-VARTDAEAADLITSDIDDND  250 (439)
T ss_dssp             HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEE-EEEECTTTCCEESCCCCTTT
T ss_pred             HHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEEcCccccccccccccccc
Confidence            7788899999999999987531    111111247899999998777777767765321 1111  000    0000   


Q ss_pred             ----------------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC---
Q 012949          299 ----------------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG---  359 (452)
Q Consensus       299 ----------------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G---  359 (452)
                                      +...+...+=++...+ |||.|.+-  .|.-+++++.++.+.++..+|...+.+-+--.+.   
T Consensus       251 ~~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E--~~~~~~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~  327 (439)
T 3i4e_A          251 KPYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCE--TGKPDLEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKK  327 (439)
T ss_dssp             GGGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHHH
T ss_pred             chhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEec--CCCCCHHHHHHHHHHhcccCCceEEeeCCCCCCcCcc
Confidence                            1234555555555566 99999881  2456899999999999988897555543222222   


Q ss_pred             -cH---HHH-HHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCC
Q 012949          360 -QS---LPN-ILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPS  434 (452)
Q Consensus       360 -lA---~AN-aLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~  434 (452)
                       +.   +++ .-.--++|+.++=.++.|+        ++-+.++++++..+...|...   ... .+--++..+..|+..
T Consensus       328 ~~~~~~~~~f~~eL~~lGv~~v~~~la~~--------raa~~A~~~~a~~i~~~Gm~a---yve-~Q~~e~~~~~~g~~~  395 (439)
T 3i4e_A          328 NLDDATIAKFQKELGAMGYKFQFITLAGF--------HALNYSMFNLAHGYARTQMSA---FVE-LQQAEFAAADKGFTA  395 (439)
T ss_dssp             HSCHHHHHTHHHHHHHHTCCEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHH---HHH-HHHHHHHHTTTTCCT
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEeChHHH--------HHHHHHHHHHHHHHHHhCCHH---HHH-HHHHhhhhhhcCcce
Confidence             11   111 1223358999999999888        788999999988887654211   111 222222334556666


Q ss_pred             CCCcccccchhh
Q 012949          435 GSKTAIALNRIA  446 (452)
Q Consensus       435 p~~~pi~G~~vf  446 (452)
                      -.++-.+|.+-|
T Consensus       396 ~~hq~~~G~~y~  407 (439)
T 3i4e_A          396 VKHQREVGTGYF  407 (439)
T ss_dssp             TSHHHHTTHHHH
T ss_pred             eecccccccchH
Confidence            666666665544

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=95.20  E-value=1.5  Score=40.96  Aligned_cols=183  Identities=11%  Similarity=0.025  Sum_probs=98.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..+.++..++++...+.|+..+-+-    |.+++      ...+.++   +.++...+ +..      .+..     ...
T Consensus        16 ~~t~~~i~~l~~~a~~~g~~~v~v~----~~~v~------~~~~~l~---~v~v~~v~-~~P------~g~~-----~~~   70 (225)
T 1mzh_A           16 HLSEKEIEEFVLKSEELGIYAVCVN----PYHVK------LASSIAK---KVKVCCVI-GFP------LGLN-----KTS   70 (225)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEEC----GGGHH------HHHHHCS---SSEEEEEE-STT------TCCS-----CHH
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhc---CCceeeEe-cCC------CCcc-----chh
Confidence            4689999999999999999988852    22222      1122222   34444332 110      0000     000


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .....++.|++.|++.|.+.+..+-..     ....+..++.+    +..++..-++.+-+...     ....+.+
T Consensus        71 ----~k~~~~~~A~~~Gad~Id~viN~g~~~-----~~~~~~~~~~i----~~v~~a~~pv~vKvi~e-----~~~l~~~  132 (225)
T 1mzh_A           71 ----VKVKEAVEAVRDGAQELDIVWNLSAFK-----SEKYDFVVEEL----KEIFRETPSAVHKVIVE-----TPYLNEE  132 (225)
T ss_dssp             ----HHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHH----HHHHHTCTTSEEEEECC-----GGGCCHH
T ss_pred             ----hhHHHHHHHHHcCCCEEEEEecHHHHh-----cCChHHHHHHH----HHHHHHhcCceEEEEEe-----CCCCCHH
Confidence                012356788999999999876554421     11234444443    33333221332223211     1124677


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCC---cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLGDT---IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT---~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.++++.+.++|+|.| -..|   .|..+++.++.+.+.+...+|   |-.=.  ..- -...+++.+++||+.|
T Consensus       133 ~~~~~a~~a~eaGad~I-~tstg~~~gga~~~~i~~v~~~v~~~ip---Via~G--GI~-t~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          133 EIKKAVEICIEAGADFI-KTSTGFAPRGTTLEEVRLIKSSAKGRIK---VKASG--GIR-DLETAISMIEAGADRI  201 (225)
T ss_dssp             HHHHHHHHHHHHTCSEE-ECCCSCSSSCCCHHHHHHHHHHHTTSSE---EEEES--SCC-SHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHHHHHHhCCCCc---EEEEC--CCC-CHHHHHHHHHhCchHH
Confidence            89999999999999999 3344   233455555555444322233   32211  111 1467888889999976

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=95.19  E-value=0.46  Score=47.33  Aligned_cols=216  Identities=15%  Similarity=0.079  Sum_probs=126.5

Q ss_pred             HHHHHHCCCCEEEEecC-CC--CCcccc--cCCHHHHHHHHHhccC-C-ceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          154 IRRLVSSGLPVVEATSF-VS--PKWVPQ--LADARDVMEAVRDLEG-A-RLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~s--~~~~p~--~~D~e~v~~~i~~~~~-~-~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++.++++||+.|=+|.. ++  ....|-  .-..++++..++.+.. + .+++++..-       .+|+ .+.++.+   
T Consensus        52 A~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d-------~Gyg-~~~~v~~---  120 (318)
T 1zlp_A           52 AAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGD-------TGGG-GPLNVQR---  120 (318)
T ss_dssp             HHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECT-------TCSS-SHHHHHH---
T ss_pred             HHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCC-------CCCC-CHHHHHH---
Confidence            56778899999999863 21  111222  1355777777776532 2 345444221       3455 3344333   


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC-CCCH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPP  302 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~-r~d~  302 (452)
                           .+.+..++|+.-|+|-....+-   |...+-=.+.++..++++.+++....-++.|.+--       ++. ....
T Consensus       121 -----tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt-------da~a~~gl  188 (318)
T 1zlp_A          121 -----FIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVART-------DARAPHGL  188 (318)
T ss_dssp             -----HHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEE-------CTHHHHHH
T ss_pred             -----HHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEee-------HHhhhcCH
Confidence                 6677788999999999876421   11101013577888888766666555556554211       110 0112


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcCCCEEeeccc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +...+=++...++|||.|.+.   |+-+++.+.++.+.    ++ +|+-+-.-. +|. ..-..-.--++|+++|-....
T Consensus       189 ~~ai~Ra~Ay~eAGAd~i~~e---~~~~~e~~~~i~~~----l~-~P~lan~~~-~g~~~~~~~~eL~~lGv~~v~~~~~  259 (318)
T 1zlp_A          189 EEGIRRANLYKEAGADATFVE---APANVDELKEVSAK----TK-GLRIANMIE-GGKTPLHTPEEFKEMGFHLIAHSLT  259 (318)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEC---CCCSHHHHHHHHHH----SC-SEEEEEECT-TSSSCCCCHHHHHHHTCCEEEECSH
T ss_pred             HHHHHHHHHHHHcCCCEEEEc---CCCCHHHHHHHHHh----cC-CCEEEEecc-CCCCCCCCHHHHHHcCCeEEEEchH
Confidence            456667788889999999986   33455655555444    44 344332221 111 111133445789999988877


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      ++        |+-+.++++++..|+..|
T Consensus       260 ~~--------raa~~a~~~~~~~l~~~g  279 (318)
T 1zlp_A          260 AV--------YATARALVNIMKILKEKG  279 (318)
T ss_dssp             HH--------HHHHHHHHHHHHHHHHHS
T ss_pred             HH--------HHHHHHHHHHHHHHHHcC
Confidence            66        677888999988888644

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=95.16  E-value=0.35  Score=45.28  Aligned_cols=154  Identities=21%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.|.+.|++.||++.-.        .+..+.++.++ ..++..+.+-+  .                   
T Consensus        25 ~~~~~~~~~~~al~~gGv~~iel~~k~--------~~~~~~i~~l~~~~~~~~vgagt--v-------------------   75 (214)
T 1wbh_A           25 KKLEHAVPMAKALVAGGVRVLNVTLRT--------ECAVDAIRAIAKEVPEAIVGAGT--V-------------------   75 (214)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEESCS--------TTHHHHHHHHHHHCTTSEEEEES--C-------------------
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCC--------hhHHHHHHHHHHHCcCCEEeeCE--E-------------------
Confidence            355667899999999999999999532        12344555443 33333222111  0                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          ...++++.|+++|++.|+.-  -.+                  .++++.+++.|..+..      |     -.+++
T Consensus        76 ----i~~d~~~~A~~aGAd~v~~p--~~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~  120 (214)
T 1wbh_A           76 ----LNPQQLAEVTEAGAQFAISP--GLT------------------EPLLKAATEGTIPLIP------G-----ISTVS  120 (214)
T ss_dssp             ----CSHHHHHHHHHHTCSCEEES--SCC------------------HHHHHHHHHSSSCEEE------E-----ESSHH
T ss_pred             ----EEHHHHHHHHHcCCCEEEcC--CCC------------------HHHHHHHHHhCCCEEE------e-----cCCHH
Confidence                01258999999999999743  222                  2567888999987642      1     12344


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHH-HH--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-CCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPG-TV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-GISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~-~v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-Ga~~VD  377 (452)
                      .+    ..+.++|+|.|.+       .|. .+  .+.++.+++.+|.+++-.    .=|.-..|.-.-+++ |+..|-
T Consensus       121 e~----~~A~~~Gad~v~~-------Fpa~~~gG~~~lk~i~~~~~~ipvva----iGGI~~~n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          121 EL----MLGMDYGLKEFKF-------FPAEANGGVKALQAIAGPFSQVRFCP----TGGISPANYRDYLALKSVLCIG  183 (214)
T ss_dssp             HH----HHHHHTTCCEEEE-------TTTTTTTHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTBSCEE
T ss_pred             HH----HHHHHCCCCEEEE-------ecCccccCHHHHHHHhhhCCCCeEEE----ECCCCHHHHHHHHhcCCCeEEE
Confidence            43    4456789998887       221 11  467788888787666533    234555688888888 666544

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=95.14  E-value=1  Score=41.17  Aligned_cols=159  Identities=13%  Similarity=0.132  Sum_probs=93.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      .+.++-.++++.+.+.|++.|++.... +       +..+.+..+++..+..+.+-.-...                   
T Consensus        16 ~d~~~~~~~~~~~~~~G~~~i~l~~~~-~-------~~~~~i~~i~~~~~~~l~vg~g~~~-------------------   68 (212)
T 2v82_A           16 ITPDEALAHVGAVIDAGFDAVEIPLNS-P-------QWEQSIPAIVDAYGDKALIGAGTVL-------------------   68 (212)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEETTS-T-------THHHHHHHHHHHHTTTSEEEEECCC-------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHhCCCCeEEEecccc-------------------
Confidence            467788999999999999999997542 1       1112223332212222221000000                   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          ..+.++.++++|++.|++  +..+                  .++++.++++|.++.      .|     -.+++.
T Consensus        69 ----~~~~i~~a~~~Gad~V~~--~~~~------------------~~~~~~~~~~g~~~~------~g-----~~t~~e  113 (212)
T 2v82_A           69 ----KPEQVDALARMGCQLIVT--PNIH------------------SEVIRRAVGYGMTVC------PG-----CATATE  113 (212)
T ss_dssp             ----SHHHHHHHHHTTCCEEEC--SSCC------------------HHHHHHHHHTTCEEE------CE-----ECSHHH
T ss_pred             ----CHHHHHHHHHcCCCEEEe--CCCC------------------HHHHHHHHHcCCCEE------ee-----cCCHHH
Confidence                123789999999999872  2111                  134577888898754      11     123444


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +    ..+.+.|+|.|.+--|.    + .-.+.++.+++.++ .+++..=    =|....|....+++||+.|-+
T Consensus       114 ~----~~a~~~G~d~v~v~~t~----~-~g~~~~~~l~~~~~~~ipvia~----GGI~~~~i~~~~~~Ga~gv~v  175 (212)
T 2v82_A          114 A----FTALEAGAQALKIFPSS----A-FGPQYIKALKAVLPSDIAVFAV----GGVTPENLAQWIDAGCAGAGL  175 (212)
T ss_dssp             H----HHHHHTTCSEEEETTHH----H-HCHHHHHHHHTTSCTTCEEEEE----SSCCTTTHHHHHHHTCSEEEE
T ss_pred             H----HHHHHCCCCEEEEecCC----C-CCHHHHHHHHHhccCCCeEEEe----CCCCHHHHHHHHHcCCCEEEE
Confidence            3    34567899998873221    1 12356667777666 4455442    344456778888899997764

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=95.10  E-value=0.45  Score=48.61  Aligned_cols=122  Identities=11%  Similarity=0.102  Sum_probs=85.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.+++.+.|...  +.              .+ ..+++++-+.|.+|.  |+.       +..+.+.+...++
T Consensus       125 ~svd~l~~~~vd~~KIgS~--~~--------------~N-~pLL~~va~~gKPVi--LSt-------GmaTl~Ei~~Ave  178 (385)
T 1vli_A          125 GSADLLQSTSPSAFKIASY--EI--------------NH-LPLLKYVARLNRPMI--FST-------AGAEISDVHEAWR  178 (385)
T ss_dssp             HHHHHHHTTCCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EEC-------TTCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCeEE--EEC-------CCCCHHHHHHHHH
Confidence            4677777778888887532  11              11 145566667899986  442       4568999999999


Q ss_pred             HHHHCCcCEEEEcC-CcCCCcHHHHHHH--HHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          311 ELHDMGCFEISLGD-TIGVGTPGTVVPM--LEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       311 ~l~~~Gad~I~L~D-T~G~~~P~~v~~l--i~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+.+.|...|.|+- +.++=+|....+|  |..+++.+|..+|++=-|-. |- .+-+++|+.+||++|+.=+
T Consensus       179 ~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~-G~-~~~~~AAvAlGA~iIEkHf  249 (385)
T 1vli_A          179 TIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSE-HP-TEAPCAAVRLGAKLIEKHF  249 (385)
T ss_dssp             HHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCS-SS-SHHHHHHHHTTCSEEEEEB
T ss_pred             HHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCC-Cc-hHHHHHHHHcCCCEEEeCC
Confidence            99999986555532 4555556555554  88889999667898866653 42 7788999999999886544

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=95.10  E-value=0.22  Score=48.63  Aligned_cols=213  Identities=14%  Similarity=0.077  Sum_probs=130.9

Q ss_pred             HHHHHHCCCCEEEEecC-CC-CCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSF-VS-PKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~s-~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++.++++||+.|=+|+. ++ ....|-  .-..++++..++.+.+ +.+++++.. .      .+|+..+.++.+     
T Consensus        29 A~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~-d------~Gyg~~~~~~~~-----   96 (275)
T 2ze3_A           29 ARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADI-E------AGYGHAPEDVRR-----   96 (275)
T ss_dssp             HHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEEC-T------TCSSSSHHHHHH-----
T ss_pred             HHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeec-C------CCCCCCHHHHHH-----
Confidence            56777899999999842 11 111222  1356778877776532 334544422 1      346544444443     


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC--------
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI--------  300 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~--------  300 (452)
                         .+.+..++|+.-|+|-.....   ..+-=.+.++..++++.+++.+++.|++..+ +..    -++...        
T Consensus        97 ---~v~~l~~aGaagv~iED~~~~---~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i-~aR----tda~~~~~g~~~~~  165 (275)
T 2ze3_A           97 ---TVEHFAALGVAGVNLEDATGL---TPTELYDLDSQLRRIEAARAAIDASGVPVFL-NAR----TDTFLKGHGATDEE  165 (275)
T ss_dssp             ---HHHHHHHTTCSEEEEECBCSS---SSSCBCCHHHHHHHHHHHHHHHHHHTSCCEE-EEE----CCTTTTTCSSSHHH
T ss_pred             ---HHHHHHHcCCcEEEECCCcCC---CCCccCCHHHHHHHHHHHHHhHhhcCCCeEE-EEe----chhhhccccccchh
Confidence               667778899999999987641   1122247888999998888777777877431 111    011101        


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ..+...+=++...++|||.|.+.=   +-+++.+.++.+.    ++ +|+-+-+..  ++-  ..-.--++|+++|-...
T Consensus       166 ~~~~ai~Ra~ay~eAGAd~i~~e~---~~~~~~~~~i~~~----~~-~P~n~~~~~--~~~--~~~eL~~lGv~~v~~~~  233 (275)
T 2ze3_A          166 RLAETVRRGQAYADAGADGIFVPL---ALQSQDIRALADA----LR-VPLNVMAFP--GSP--VPRALLDAGAARVSFGQ  233 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECTT---CCCHHHHHHHHHH----CS-SCEEEECCT--TSC--CHHHHHHTTCSEEECTT
T ss_pred             hHHHHHHHHHHHHHCCCCEEEECC---CCCHHHHHHHHHh----cC-CCEEEecCC--CCC--CHHHHHHcCCcEEEECh
Confidence            235666677788899999999853   3345666555544    43 245443332  222  22444578999998776


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      .++        |+-+.++++++..++..|
T Consensus       234 ~~~--------raa~~a~~~~~~~i~~~g  254 (275)
T 2ze3_A          234 SLM--------LATLGLVQRMAAELHAAE  254 (275)
T ss_dssp             HHH--------HHHHHHHHHHHHHHHHHS
T ss_pred             HHH--------HHHHHHHHHHHHHHHHhC
Confidence            665        667888999988888767

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*

Probab=95.10  E-value=1.5  Score=42.97  Aligned_cols=137  Identities=13%  Similarity=0.140  Sum_probs=85.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccchh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      .++.++..++++.+.+.|+..|-++. .-    |-+ .|..++++.+++.... .+...+.+..  +             
T Consensus        49 ~ls~e~i~~~i~~~~~~g~~~i~~tG-GE----Pll~~~l~~li~~~~~~~~~~~i~i~TNG~l--l-------------  108 (340)
T 1tv8_A           49 LLTFDEMARIAKVYAELGVKKIRITG-GE----PLMRRDLDVLIAKLNQIDGIEDIGLTTNGLL--L-------------  108 (340)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEES-SC----GGGSTTHHHHHHHHTTCTTCCEEEEEECSTT--H-------------
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEeC-CC----ccchhhHHHHHHHHHhCCCCCeEEEEeCccc--h-------------
Confidence            58999999999999999999888864 22    322 2455666666654332 3333332221  0             


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecC-Ch-HHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASA-SE-AFSKSNINC-SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd-~~~~~~~~~-s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                              .+.++..+++|++.|.|.+-. ++ .|.+..-+. +    ++++.+.++.+++.|+.|.++..  + .+.  
T Consensus       109 --------~~~~~~L~~~g~~~v~iSld~~~~~~~~~i~~~~~~----~~~v~~~i~~l~~~g~~v~i~~v--v-~~g--  171 (340)
T 1tv8_A          109 --------KKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIK----ATTILEQIDYATSIGLNVKVNVV--I-QKG--  171 (340)
T ss_dssp             --------HHHHHHHHHHTCCEEEEECCCSSHHHHHHHHSSCCC----HHHHHHHHHHHHHTTCEEEEEEE--E-CTT--
T ss_pred             --------HHHHHHHHHCCCCEEEEecCCCCHHHHHHhhCCCCC----HHHHHHHHHHHHHCCCCEEEEEE--E-eCC--
Confidence                    125667778899999998744 43 332222112 3    44555666888899997664433  3 121  


Q ss_pred             CCCHHHHHHHHHHHHHCCcC
Q 012949          299 AIPPSKVAYVAKELHDMGCF  318 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad  318 (452)
                       .+.+.+.++++.+.+.|++
T Consensus       172 -~n~~ei~~~~~~~~~~g~~  190 (340)
T 1tv8_A          172 -INDDQIIPMLEYFKDKHIE  190 (340)
T ss_dssp             -TTGGGHHHHHHHHHHTTCC
T ss_pred             -CCHHHHHHHHHHHHhcCCe
Confidence             2456788889999999987

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=95.07  E-value=0.19  Score=49.60  Aligned_cols=218  Identities=17%  Similarity=0.130  Sum_probs=127.4

Q ss_pred             HHHHHHCCCCEEEEecC-C--CCCccccc--CCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          154 IRRLVSSGLPVVEATSF-V--SPKWVPQL--ADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~~--~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++.++++|++.|=+|.. .  +....|..  -..++++..++.+.. +.+++++.. .      .+|+..+.++.+    
T Consensus        30 A~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~-d------~Gyg~~~~~~~~----   98 (295)
T 1xg4_A           30 ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDA-D------IGFGSSAFNVAR----   98 (295)
T ss_dssp             HHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEEC-T------TCSSSSHHHHHH----
T ss_pred             HHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecC-C------cccCCCHHHHHH----
Confidence            67778899999999854 1  11223321  355778777776532 334444321 1      345544444433    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                          .+....++|+..|+|-....+-   |...+-=.+.++..++++.+++.+..-++.|.+-.-. +     .....+.
T Consensus        99 ----~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda-~-----~~~gl~~  168 (295)
T 1xg4_A           99 ----TVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDA-L-----AVEGLDA  168 (295)
T ss_dssp             ----HHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECC-H-----HHHCHHH
T ss_pred             ----HHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHH-h-----hhcCHHH
Confidence                6677778999999999876421   1100000356778888766665554445555421100 0     0112367


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC-CcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD-TYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn-d~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ..+-++.+.++|||.|.+.   |.-+++.+.++.+.+.  .|.+ +-+-..+ +..+   +.-.--+.|+++|-....++
T Consensus       169 ai~ra~ay~eAGAd~i~~e---~~~~~~~~~~i~~~~~--iP~~-~N~~~~g~~p~~---~~~eL~~~G~~~v~~~~~~~  239 (295)
T 1xg4_A          169 AIERAQAYVEAGAEMLFPE---AITELAMYRQFADAVQ--VPIL-ANITEFGATPLF---TTDELRSAHVAMALYPLSAF  239 (295)
T ss_dssp             HHHHHHHHHHTTCSEEEET---TCCSHHHHHHHHHHHC--SCBE-EECCSSSSSCCC---CHHHHHHTTCSEEEESSHHH
T ss_pred             HHHHHHHHHHcCCCEEEEe---CCCCHHHHHHHHHHcC--CCEE-EEecccCCCCCC---CHHHHHHcCCCEEEEChHHH
Confidence            7778889999999999986   3344666666666552  3421 1111111 1112   22344578999998877766


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~G  409 (452)
                              |+-+.++++++..|+..|
T Consensus       240 --------~aa~~a~~~~~~~i~~~g  257 (295)
T 1xg4_A          240 --------RAMNRAAEHVYNVLRQEG  257 (295)
T ss_dssp             --------HHHHHHHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHHHHHHHHHhC
Confidence                    677888999888888644

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=95.03  E-value=0.079  Score=49.67  Aligned_cols=214  Identities=14%  Similarity=0.078  Sum_probs=108.2

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.+.++|++.||+....     +.-.+.+++.+.+++ .++++.++.+...        +........+.......
T Consensus        21 ~~~l~~~~~~G~~~vEl~~~~-----~~~~~~~~~~~~l~~-~gl~~~~~~~~~~--------~~~~d~~~r~~~~~~~~   86 (275)
T 3qc0_A           21 AEAVDICLKHGITAIAPWRDQ-----VAAIGLGEAGRIVRA-NGLKLTGLCRGGF--------FPAPDASGREKAIDDNR   86 (275)
T ss_dssp             HHHHHHHHHTTCCEEECBHHH-----HHHHCHHHHHHHHHH-HTCEESCEEEEEC--------CCCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecccc-----ccccCHHHHHHHHHH-cCCceEEeecCCC--------cCCCCHHHHHHHHHHHH
Confidence            345677789999999996421     001234555555543 3555544432110        00000000000000123


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeec---CCCCCCCCHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG---CPVEGAIPPS  303 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g---~p~~~r~d~e  303 (452)
                      +.++.|.+.|++.|.+.....+.     -..+    .+...+.+.++.++|++.|+++.  +...-.   .+...-.+++
T Consensus        87 ~~i~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~~~~~~~~~~~~~~~~  159 (275)
T 3qc0_A           87 RAVDEAAELGADCLVLVAGGLPG-----GSKNIDAARRMVVEGIAAVLPHARAAGVPLA--IEPLHPMYAADRACVNTLG  159 (275)
T ss_dssp             HHHHHHHHTTCSCEEEECBCCCT-----TCCCHHHHHHHHHHHHHHHHHHHHHHTCCEE--ECCCCGGGTTTTBSCCCHH
T ss_pred             HHHHHHHHhCCCEEEEeeCCCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EeECCCcccCCccccCCHH
Confidence            47788889999999987532110     0122    34455666777888999998765  332100   0111123677


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .+.++++.+-. .+ .++ -|+.=...-.   +..+.+++..| +--..+|.+|...-.          + +.    +. 
T Consensus       160 ~~~~l~~~~~~-~v-g~~-~D~~h~~~~~---d~~~~l~~~~~~~~i~~vH~~D~~~~~----------~-~~----~~-  217 (275)
T 3qc0_A          160 QALDICETLGP-GV-GVA-IDVYHVWWDP---DLANQIARAGKMKAILAHHICDWLVPT----------K-DM----LT-  217 (275)
T ss_dssp             HHHHHHHHHCT-TE-EEE-EEHHHHTTCT---THHHHHHHHHHTTCEEEEEECBCCSSC----------C-CS----SS-
T ss_pred             HHHHHHHHhCc-cc-EEE-EEhhhheeCC---CHHHHHHHcCccceEEEEEecCCCCCc----------c-cc----cC-
Confidence            77777776643 11 222 2654333212   23334433333 334688999953210          0 00    00 


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                       +.+  .+| .|..+...++..|+..|++
T Consensus       218 -~r~--~~G-~G~id~~~~~~~L~~~gy~  242 (275)
T 3qc0_A          218 -DRG--MMG-DGVIDLKGIRRRIEAAGFH  242 (275)
T ss_dssp             -BCB--CTT-SSCCCHHHHHHHHHHTTCC
T ss_pred             -CCc--CCC-CCccCHHHHHHHHHHcCCC
Confidence             111  122 5889999999999986654

>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*

Probab=95.02  E-value=0.28  Score=49.52  Aligned_cols=221  Identities=14%  Similarity=0.075  Sum_probs=123.0

Q ss_pred             ccCCCCCC--CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccc--ccCC----HHHHHHHHHhc-cCCceeEEe---cc
Q 012949          136 DGLQNEKN--TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVP--QLAD----ARDVMEAVRDL-EGARLPVLT---PN  203 (452)
Q Consensus       136 DG~Q~~~~--~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p--~~~D----~e~v~~~i~~~-~~~~l~~l~---~~  203 (452)
                      .+.+..+.  ..+.+....+++...+.+-+.|--.+...-++..  .+.+    ...+...++.+ ....+++.+   .+
T Consensus        18 ~~~yAV~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg   97 (349)
T 3elf_A           18 QNSYAFPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHTDHC   97 (349)
T ss_dssp             HTTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEEEECCC
T ss_pred             HcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            34444443  4788999999999999999977654421111110  0111    12222233322 223334322   11


Q ss_pred             hhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc
Q 012949          204 LKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP  283 (452)
Q Consensus       204 ~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~  283 (452)
                      ....++   .|.+.   .++    ...+.+++++++|..-|.+=.|.          .+.+|.++..++++++|++.|+.
T Consensus        98 ~~~~ld---~~~~~---~l~----~~~~~i~~~i~~GFtSVMiDgS~----------lp~eENi~~Tk~vv~~ah~~gvs  157 (349)
T 3elf_A           98 PKDKLD---SYVRP---LLA----ISAQRVSKGGNPLFQSHMWDGSA----------VPIDENLAIAQELLKAAAAAKII  157 (349)
T ss_dssp             CGGGGG---GTHHH---HHH----HHHHHHHTTCCCSCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCE
T ss_pred             CCcccc---hhhhh---hHH----HHHHHHHHHhhcCCCEEEecCCC----------CCHHHHHHHHHHHHHHHHHcCCe
Confidence            110000   01100   000    01234555555678888764432          25689999999999999999999


Q ss_pred             EEEEEEeeecCCCC--------CCCCHHHHHHHHHHHH--HCCcCEEEEc--CCcCC-------CcHHHHHHHHHHHHHh
Q 012949          284 VRGYVSCVVGCPVE--------GAIPPSKVAYVAKELH--DMGCFEISLG--DTIGV-------GTPGTVVPMLEAVMAV  344 (452)
Q Consensus       284 V~~~l~~~~g~p~~--------~r~d~e~l~~~a~~l~--~~Gad~I~L~--DT~G~-------~~P~~v~~li~~l~~~  344 (452)
                      |.+.|-..-|.+|.        ..++|+...+++++.-  .-|+|.+.++  -.=|.       +.|+.+.++=+.+.++
T Consensus       158 VEaElG~iGG~Edgv~~~~~~~~yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~I~~~v~~~  237 (349)
T 3elf_A          158 LEIEIGVVGGEEDGVANEINEKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAK  237 (349)
T ss_dssp             EEEEESCCBC-------------CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSSCCCTTSSCCCTHHHHHHHHHHHHH
T ss_pred             EEEEeeccccccCCcccccccccCCCHHHHHHHHHHhCCCCCCceEEEEecCCcccCCCCCCCccCHHHHHHHHHHHHhh
Confidence            99888775444432        2478999988887663  2347766553  22233       2345555554444433


Q ss_pred             CC------CccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          345 VP------VEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       345 ~p------~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ++      .++|.+|.=  -|........|+..|+.-|+.
T Consensus       238 ~~~~~~~~~vpLVlHGg--SG~p~e~i~~ai~~GV~KiNi  275 (349)
T 3elf_A          238 LGLPADAKPFDFVFHGG--SGSLKSEIEEALRYGVVKMNV  275 (349)
T ss_dssp             HTCCTTCCCCCEEECCC--TTCCHHHHHHHHHTTEEEEEE
T ss_pred             cCCccccCCCcEEEeCC--CCCCHHHHHHHHHcCCEEEEc
Confidence            32      456776654  588999999999999876543

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=94.99  E-value=0.31  Score=48.13  Aligned_cols=217  Identities=14%  Similarity=0.060  Sum_probs=124.4

Q ss_pred             HHHHHHCCCCEEEEecC-CC--CCccccc--CCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          154 IRRLVSSGLPVVEATSF-VS--PKWVPQL--ADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~s--~~~~p~~--~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++.++++|++.|=+|.. ++  ....|-.  -..++++..++.+. .+.+++++.. .      .+|+ .+.++.+    
T Consensus        35 A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~-d------~Gyg-~~~~v~~----  102 (298)
T 3eoo_A           35 AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDI-D------TGWG-GAFNIAR----  102 (298)
T ss_dssp             HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEEC-T------TCSS-SHHHHHH----
T ss_pred             HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEEC-C------CCCC-CHHHHHH----
Confidence            55677889999999852 11  1112321  24577777777653 2334444421 1      2454 2333332    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC-CCCHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPS  303 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~-r~d~e  303 (452)
                          .++...++|+.-|+|-..+.+-   |...+-=.+.++..++++.+++.++.-++-|.+   .+    |+. ....+
T Consensus       103 ----~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~A---RT----Da~~~~gld  171 (298)
T 3eoo_A          103 ----TIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMA---RT----DAAAAEGID  171 (298)
T ss_dssp             ----HHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEE---EE----CTHHHHHHH
T ss_pred             ----HHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEE---ee----hhhhhcCHH
Confidence                5677788999999999877531   111111136888999886665544323333321   10    110 01234


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ...+=++...++|||.|.+.   |.-+++++.++.+.+.  .|.. +-+-..+...+  -+.-.--++|+++|-.....+
T Consensus       172 eai~Ra~ay~~AGAD~if~~---~~~~~ee~~~~~~~~~--~Pl~-~n~~~~g~tp~--~~~~eL~~lGv~~v~~~~~~~  243 (298)
T 3eoo_A          172 AAIERAIAYVEAGADMIFPE---AMKTLDDYRRFKEAVK--VPIL-ANLTEFGSTPL--FTLDELKGANVDIALYCCGAY  243 (298)
T ss_dssp             HHHHHHHHHHHTTCSEEEEC---CCCSHHHHHHHHHHHC--SCBE-EECCTTSSSCC--CCHHHHHHTTCCEEEECSHHH
T ss_pred             HHHHHHHhhHhcCCCEEEeC---CCCCHHHHHHHHHHcC--CCeE-EEeccCCCCCC--CCHHHHHHcCCeEEEEchHHH
Confidence            44555667788999999885   3457888888877763  3421 11111111111  123444568999998877766


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~G  409 (452)
                              |+-+.++++++..|+..|
T Consensus       244 --------raa~~a~~~~~~~i~~~g  261 (298)
T 3eoo_A          244 --------RAMNKAALNFYETVRRDG  261 (298)
T ss_dssp             --------HHHHHHHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHHHHHHHHHcC
Confidence                    677889999998887644

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=94.96  E-value=1.3  Score=41.12  Aligned_cols=213  Identities=12%  Similarity=0.072  Sum_probs=106.3

Q ss_pred             HHHHHHHHHCCCCEEEEe-cCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEAT-SFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVY  229 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG-~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~  229 (452)
                      .+.++.+.++|++.||+. ......+ +.-.+.+++.+.+++ .++++.++.....        |........+......
T Consensus        17 ~~~l~~~~~~G~~~vEl~~~~~~~~~-~~~~~~~~~~~~l~~-~gl~~~~~~~~~~--------~~~~~~~~~~~~~~~~   86 (278)
T 1i60_A           17 KLDLELCEKHGYDYIEIRTMDKLPEY-LKDHSLDDLAEYFQT-HHIKPLALNALVF--------FNNRDEKGHNEIITEF   86 (278)
T ss_dssp             HHHHHHHHHTTCSEEEEETTTHHHHH-TTSSCHHHHHHHHHT-SSCEEEEEEEEEC--------CSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEccHHHHHHH-hccCCHHHHHHHHHH-cCCCeeeeccccc--------cccCCHHHHHHHHHHH
Confidence            345666778999999998 4321000 111345555555554 3555543321110        0000000000000012


Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      .+.++.|.+.|++.|.+......      .+.+.    +...+.+.++.++|++.|+.+.  +...-+.+ ..-.+++.+
T Consensus        87 ~~~i~~a~~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~-~~~~~~~~~  157 (278)
T 1i60_A           87 KGMMETCKTLGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEFVGHPQ-CTVNTFEQA  157 (278)
T ss_dssp             HHHHHHHHHHTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EECCCCTT-BSSCSHHHH
T ss_pred             HHHHHHHHHcCCCEEEEecCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE--EEecCCcc-chhcCHHHH
Confidence            34778888999999988543221      01233    3455666677788999998654  33221100 012356777


Q ss_pred             HHHHHHHHHCCcC--EEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          306 AYVAKELHDMGCF--EISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       306 ~~~a~~l~~~Gad--~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .++++.+   +.+  .+++ |+.=.    ..|.   +    +.+.+++-...+|+||..+..         .|-. .+.-
T Consensus       158 ~~l~~~~---~~~~~g~~~-D~~h~~~~g~d~~---~----~~~~~~~~i~~vHl~D~~~~~---------~g~~-~~~~  216 (278)
T 1i60_A          158 YEIVNTV---NRDNVGLVL-DSFHFHAMGSNIE---S----LKQADGKKIFIYHIDDTEDFP---------IGFL-TDED  216 (278)
T ss_dssp             HHHHHHH---CCTTEEEEE-EHHHHHHTTCCHH---H----HHTSCGGGEEEEEECEECCCC---------TTTC-CGGG
T ss_pred             HHHHHHh---CCCCeeEEE-EeEEEeecCCCHH---H----HHhcCcceEEEEEecCCCCCC---------ccch-hhcc
Confidence            7777655   322  2333 65211    1222   2    223343334688999976541         0100 0000


Q ss_pred             ccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          380 VAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       380 v~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      -.-+|        .|..+.+.++..|+..|++
T Consensus       217 ~~~~G--------~G~id~~~~~~~L~~~gy~  240 (278)
T 1i60_A          217 RVWPG--------QGAIDLDAHLSALKEIGFS  240 (278)
T ss_dssp             EESTT--------SSSSCHHHHHHHHHHTTCC
T ss_pred             CCCCC--------CCCCcHHHHHHHHHHcCCC
Confidence            01122        4789999999999987664

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=94.94  E-value=0.32  Score=46.14  Aligned_cols=145  Identities=13%  Similarity=0.065  Sum_probs=81.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|++.|.+..+..+..    .....+...+.+.++.++|++.|+++.  +..      . ..+++.+.++++
T Consensus       106 ~~i~~a~~lG~~~v~~~~G~~~~~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~------~-~~~~~~~~~l~~  172 (290)
T 3tva_A          106 EISDFASWVGCPAIGLHIGFVPES----SSPDYSELVRVTQDLLTHAANHGQAVH--LET------G-QESADHLLEFIE  172 (290)
T ss_dssp             HHHHHHHHHTCSEEEECCCCCCCT----TSHHHHHHHHHHHHHHHHHHTTTCEEE--EEC------C-SSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCCccc----chHHHHHHHHHHHHHHHHHHHcCCEEE--Eec------C-CCCHHHHHHHHH
Confidence            477888889999999864421100    111245667778888999999998754  332      1 135677777776


Q ss_pred             HHHHCCcCEE-EEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCC
Q 012949          311 ELHDMGCFEI-SLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCP  387 (452)
Q Consensus       311 ~l~~~Gad~I-~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP  387 (452)
                      .+   +.+.+ ..-|+.=...-  ....+.++.+..    -...+|.||..+...      -.-|..+-.-.  .+|   
T Consensus       173 ~~---~~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~----~i~~vHl~D~~~~~~------~~~g~~~~~~~--~~G---  234 (290)
T 3tva_A          173 DV---NRPNLGINFDPANMILYGTGNPIEALRKVAR----YVRSIHCKDALWAPV------NERGKSWGQEV--ALG---  234 (290)
T ss_dssp             HH---CCTTEEEEECHHHHHHTTCSCHHHHHHHHGG----GEEEEEECEEECCCG------GGBTTBCCEEE--STT---
T ss_pred             hc---CCCCEEEEeccHHHHHhCCCCHHHHHHHHHh----hheEEEeccccCCCc------ccccccccccc--CCC---
Confidence            55   32222 22365322110  122334444332    246789999754310      01121111111  222   


Q ss_pred             CCCCCCCcccHHHHHHHHHcCCCC
Q 012949          388 YAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       388 ~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                           .|..+...++..|+..|++
T Consensus       235 -----~G~id~~~~~~~L~~~gy~  253 (290)
T 3tva_A          235 -----TGDVGMEAYLTTLWEIGYR  253 (290)
T ss_dssp             -----SSSSCHHHHHHHHHHTTCC
T ss_pred             -----CceeCHHHHHHHHHHcCCC
Confidence                 5789999999999986654

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=94.92  E-value=3  Score=40.70  Aligned_cols=197  Identities=16%  Similarity=0.175  Sum_probs=110.6

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---h-ccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---D-LEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.+.-.++++.|.+.|++.|-+.--...  .+.+. .+|-.+.++   + ..+.++++++-.-.          ....
T Consensus        24 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE--~~~Ls-~~Er~~v~~~~~~~~~g~rvpviaGvg~----------~~t~   90 (301)
T 3m5v_A           24 KVDEQSYARLIKRQIENGIDAVVPVGTTGE--SATLT-HEEHRTCIEIAVETCKGTKVKVLAGAGS----------NATH   90 (301)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEECSSTTTT--GGGSC-HHHHHHHHHHHHHHHTTSSCEEEEECCC----------SSHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECccccC--hhhCC-HHHHHHHHHHHHHHhCCCCCeEEEeCCC----------CCHH
Confidence            578999999999999999999877422211  23342 233333333   3 22324444431100          0001


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--C
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--E  297 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--~  297 (452)
                      +        ..+-.+.|.+.|+|-+.+..+-   +    ++-|.++.++-++.+.+.   .++++..|=     .|.  .
T Consensus        91 ~--------ai~la~~a~~~Gadavlv~~P~---y----~~~s~~~l~~~f~~va~a---~~lPiilYn-----~P~~tg  147 (301)
T 3m5v_A           91 E--------AVGLAKFAKEHGADGILSVAPY---Y----NKPTQQGLYEHYKAIAQS---VDIPVLLYN-----VPGRTG  147 (301)
T ss_dssp             H--------HHHHHHHHHHTTCSEEEEECCC---S----SCCCHHHHHHHHHHHHHH---CSSCEEEEE-----CHHHHS
T ss_pred             H--------HHHHHHHHHHcCCCEEEEcCCC---C----CCCCHHHHHHHHHHHHHh---CCCCEEEEe-----CchhhC
Confidence            1        1235567888999999887652   1    223555666555444433   478876433     232  2


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ...+++.+.++++    .-...+.++|+.|  ...++.++++..    ++. .-+-.+|+.      .+.++.+|++   
T Consensus       148 ~~l~~~~~~~La~----~~pnivgiKdssg--d~~~~~~~~~~~----~~f-~v~~G~d~~------~~~~l~~G~~---  207 (301)
T 3m5v_A          148 CEISTDTIIKLFR----DCENIYGVKEASG--NIDKCVDLLAHE----PRM-MLISGEDAI------NYPILSNGGK---  207 (301)
T ss_dssp             CCCCHHHHHHHHH----HCTTEEEEEECSS--CHHHHHHHHHHC----TTS-EEEECCGGG------HHHHHHTTCC---
T ss_pred             cCCCHHHHHHHHh----cCCCEEEEEeCCC--CHHHHHHHHHhC----CCe-EEEEccHHH------HHHHHHcCCC---
Confidence            3467787777763    2246899999987  455666655443    432 224444432      5567888976   


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +.+.|          ++|+.-+.++...+
T Consensus       208 G~is~----------~~n~~P~~~~~l~~  226 (301)
T 3m5v_A          208 GVISV----------TSNLLPDMISALTH  226 (301)
T ss_dssp             EEEES----------GGGTCHHHHHHHHH
T ss_pred             EEEeh----------HHHhhHHHHHHHHH
Confidence            44443          44566666655554

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.86  E-value=0.69  Score=46.21  Aligned_cols=140  Identities=19%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             hHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCC
Q 012949          232 GFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~  300 (452)
                      ..+.|.++|.|.|.|-.+-        |+..+  ...+|-|.++=.+.+.++++.+|+. .++|.+-|+....  ..+..
T Consensus       149 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~--~~~g~  226 (340)
T 3gr7_A          149 GARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDY--HPDGL  226 (340)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCC--STTSC
T ss_pred             HHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccc--cCCCC
Confidence            5566778999999987652        33222  2345778887777778888887764 6666655653210  11235


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCC--cCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDT--IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT--~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                      +.+...++++.+.++|+|.|.+.+.  ...   ..|..-.++++.+++.++. +|..=.--   .-...+..+++.| ||
T Consensus       227 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i-PVi~~GgI---~s~e~a~~~L~~G~aD  302 (340)
T 3gr7_A          227 TAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADI-PTGAVGLI---TSGWQAEEILQNGRAD  302 (340)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTC-CEEEESSC---CCHHHHHHHHHTTSCS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCC-cEEeeCCC---CCHHHHHHHHHCCCee
Confidence            6788899999999999999998652  110   1122245678888888753 44432211   1246777889999 88


Q ss_pred             EEe
Q 012949          375 TVD  377 (452)
Q Consensus       375 ~VD  377 (452)
                      .|-
T Consensus       303 ~V~  305 (340)
T 3gr7_A          303 LVF  305 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=94.83  E-value=1.8  Score=41.72  Aligned_cols=121  Identities=11%  Similarity=0.071  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHCCCCEEEEecCC--C--C-Ccccc---cCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhc-cch
Q 012949          150 KVELIRRLVSSGLPVVEATSFV--S--P-KWVPQ---LADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQC-HAS  220 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~--s--~-~~~p~---~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~-~~~  220 (452)
                      -.+.++.+.++|++.||+....  .  + .+.|.   -.+.+++.+.+++ .++++.++.....     +..+.+. .+.
T Consensus        38 l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~-~GL~i~~~~~~~~-----~~~~~~~~~~~  111 (305)
T 3obe_A           38 MPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDD-AGLRISSSHLTPS-----LREYTKENMPK  111 (305)
T ss_dssp             HHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHH-TTCEEEEEBCCCS-----CCCCCGGGHHH
T ss_pred             HHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHH-CCCeEEEeecccc-----ccccchhhHHH
Confidence            4567888899999999997431  0  0 11121   1155666666654 3555554432110     0000000 001


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                      .++    ...+.++.|.+.|++.|.+.. ..+..    .....+...+.+.++.++|++.|+.+.
T Consensus       112 ~~~----~~~~~i~~A~~lG~~~v~~~~-~~~~~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~  167 (305)
T 3obe_A          112 FDE----FWKKATDIHAELGVSCMVQPS-LPRIE----NEDDAKVVSEIFNRAGEITKKAGILWG  167 (305)
T ss_dssp             HHH----HHHHHHHHHHHHTCSEEEECC-CCCCS----SHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             HHH----HHHHHHHHHHHcCCCEEEeCC-CCCCC----CHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence            111    123477888899999998742 11100    001134556777788899999998764

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.65  E-value=0.98  Score=45.54  Aligned_cols=118  Identities=11%  Similarity=0.118  Sum_probs=80.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.+.+.|++.+.|...  +.              .+ ..+++++-+.|.+|.  |+.       |..+.+.+...++.
T Consensus       103 svd~l~~~~v~~~KI~S~--~~--------------~N-~pLL~~va~~gKPvi--Lst-------Gmstl~Ei~~Ave~  156 (350)
T 3g8r_A          103 SVDLIEAHGIEIIKIASC--SF--------------TD-WPLLERIARSDKPVV--AST-------AGARREDIDKVVSF  156 (350)
T ss_dssp             HHHHHHHTTCCEEEECSS--ST--------------TC-HHHHHHHHTSCSCEE--EEC-------TTCCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECcc--cc--------------cC-HHHHHHHHhhCCcEE--EEC-------CCCCHHHHHHHHHH
Confidence            666667778888887542  21              11 134566667788876  442       44578888888888


Q ss_pred             HHHCCcCEEEE--cCCcCCCcHHHHHH--HHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          312 LHDMGCFEISL--GDTIGVGTPGTVVP--MLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       312 l~~~Gad~I~L--~DT~G~~~P~~v~~--li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.|.+ |.|  | +.++=+|....+  .|..+++.+|..++++=-|-.-+ ..+-+++|+.+||++|+.
T Consensus       157 i~~~g~~-viLlhC-~s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~-~~~~~~AAvAlGA~vIEk  224 (350)
T 3g8r_A          157 MLHRGKD-LTIMHC-VAEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPD-LMEPIMLAVAQGATVFEK  224 (350)
T ss_dssp             HHTTTCC-EEEEEC-CCCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSS-CCHHHHHHHHTTCCEEEE
T ss_pred             HHHcCCC-EEEEec-CCCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCC-ccHHHHHHHHcCCCEEEE
Confidence            8888876 555  5 345655544333  47888999987789997787622 234568999999998855

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=94.59  E-value=1.5  Score=43.55  Aligned_cols=207  Identities=17%  Similarity=0.181  Sum_probs=107.5

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHH----Hhc---cCC
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAV----RDL---EGA  195 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i----~~~---~~~  195 (452)
                      |.-.-|+.+|+ |-..--+..++.+..++.++.+.+.|.+.|++|.-+ .|. .+.+ +.++.++++    +.+   .++
T Consensus        10 ~~iMGIlNvTP-DSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPG-a~~v-~~~eE~~Rv~pvI~~l~~~~~v   86 (314)
T 2vef_A           10 TVICGIINVTP-DSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPG-SSYV-EIEEEIQRVVPVIKAIRKESDV   86 (314)
T ss_dssp             CEEEEEEECCC----------CHHHHHHHHHHHHHHTTCSEEEEECCC------CHH-HHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ceEEEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCC-CCCC-CHHHHHHHHHHHHHHHHhhCCc
Confidence            33345677776 333332335688999999999999999999999743 232 1111 122333332    222   233


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      .+++=+..                          .+-+++|+++|++.|.=.....         .+        .++.+
T Consensus        87 piSIDT~~--------------------------~~Va~aAl~aGa~iINDVsg~~---------~d--------~~m~~  123 (314)
T 2vef_A           87 LISIDTWK--------------------------SQVAEAALAAGADLVNDITGLM---------GD--------EKMPH  123 (314)
T ss_dssp             EEEEECSC--------------------------HHHHHHHHHTTCCEEEETTTTC---------SC--------TTHHH
T ss_pred             eEEEeCCC--------------------------HHHHHHHHHcCCCEEEECCCCC---------CC--------hHHHH
Confidence            33321211                          2367889999998775322210         00        13345


Q ss_pred             HHHhCCCcEEEEEEeee--cCCCCC-----------C--------------C-C--HHHHHHHHHHHHHCCc--CEEEEc
Q 012949          276 AAKVLSIPVRGYVSCVV--GCPVEG-----------A--------------I-P--PSKVAYVAKELHDMGC--FEISLG  323 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~--g~p~~~-----------r--------------~-d--~e~l~~~a~~l~~~Ga--d~I~L~  323 (452)
                      .+++.|..+.  +++.-  |.|...           .              . +  .+++.+.++.+.++|+  +.|.| 
T Consensus       124 v~a~~~~~vv--lmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~Iil-  200 (314)
T 2vef_A          124 VVAEARAQVV--IMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENILL-  200 (314)
T ss_dssp             HHHHHTCEEE--EECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEEE-
T ss_pred             HHHHcCCCEE--EEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhEEE-
Confidence            5677787764  55431  112110           0              0 0  1334556677888998  46776 


Q ss_pred             CC-cCC-CcHHHHHHHHHHHHHhC-CCccEEEEeCCC------c---Cc---------------H-HHHHHHHHHcCCCE
Q 012949          324 DT-IGV-GTPGTVVPMLEAVMAVV-PVEKLAVHLHDT------Y---GQ---------------S-LPNILISLQMGIST  375 (452)
Q Consensus       324 DT-~G~-~~P~~v~~li~~l~~~~-p~~~l~vH~Hnd------~---Gl---------------A-~ANaLaAl~aGa~~  375 (452)
                      |. +|. -+.++-.++++.+.+.. ++.|+-+=.-|-      .   |+               + .|-+..|++.||++
T Consensus       201 DPGiGF~kt~~~nl~ll~~l~~l~~~g~PvL~G~SrKsfig~~~~~~g~~~~p~tel~~~~R~~~t~a~~~~a~~~Ga~I  280 (314)
T 2vef_A          201 DPGIGFGLTKKENLLLLRDLDKLHQKGYPIFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEV  280 (314)
T ss_dssp             ECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEEECSSCHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHHHTTCSE
T ss_pred             eCCCCcccchHHHHHHHHHHHHhhcCCCCEEEEeCccHHHhhhhccccccCCcccccchhhhhHHHHHHHHHHHHcCCcE
Confidence            75 343 34567777888777642 344444422220      0   22               2 34456778899988


Q ss_pred             Eeec
Q 012949          376 VDCS  379 (452)
Q Consensus       376 VD~S  379 (452)
                      |.+.
T Consensus       281 vRvH  284 (314)
T 2vef_A          281 VRVH  284 (314)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            7653

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=94.56  E-value=0.37  Score=44.26  Aligned_cols=174  Identities=13%  Similarity=0.115  Sum_probs=93.8

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      +.....+.++.+.+.|++.+++...-.+ +.+.+....+..+.+++..+..+.+.  +.+..                  
T Consensus        14 D~~~~~~~~~~~~~~G~~~i~~~~~dg~-~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~------------------   74 (220)
T 2fli_A           14 DYANFASELARIEETDAEYVHIDIMDGQ-FVPNISFGADVVASMRKHSKLVFDCHLMVVDPE------------------   74 (220)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEEEEBSS-SSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGG------------------
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEEeecCC-CCCccccCHHHHHHHHHhCCCCEEEEEeecCHH------------------
Confidence            4456678889999999999887742111 01222221345566665444333321  12111                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                             +.++.+.++|++.|.+-....+                ...++++.+++.|..+...+.     |   .++.+
T Consensus        75 -------~~i~~~~~~gad~v~vh~~~~~----------------~~~~~~~~~~~~g~~i~~~~~-----~---~t~~e  123 (220)
T 2fli_A           75 -------RYVEAFAQAGADIMTIHTESTR----------------HIHGALQKIKAAGMKAGVVIN-----P---GTPAT  123 (220)
T ss_dssp             -------GGHHHHHHHTCSEEEEEGGGCS----------------CHHHHHHHHHHTTSEEEEEEC-----T---TSCGG
T ss_pred             -------HHHHHHHHcCCCEEEEccCccc----------------cHHHHHHHHHHcCCcEEEEEc-----C---CCCHH
Confidence                   2578899999999988654322                123455667777877653321     1   12333


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCC----CccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP----VEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      .+..+     ..++|.|.+ |++     |...+....+.++.+++..+    ..++.+    +-|....|.-.++++|++
T Consensus       124 ~~~~~-----~~~~d~vl~-~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~~~~~~~~~Gad  193 (220)
T 2fli_A          124 ALEPL-----LDLVDQVLI-MTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV----DGGVDNKTIRACYEAGAN  193 (220)
T ss_dssp             GGGGG-----TTTCSEEEE-ESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE----ESSCCTTTHHHHHHHTCC
T ss_pred             HHHHH-----HhhCCEEEE-EEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE----ECcCCHHHHHHHHHcCCC
Confidence            33222     235787654 333     22222222233455554331    334444    445555788888899999


Q ss_pred             EEeec
Q 012949          375 TVDCS  379 (452)
Q Consensus       375 ~VD~S  379 (452)
                      .|.+.
T Consensus       194 ~vvvG  198 (220)
T 2fli_A          194 VFVAG  198 (220)
T ss_dssp             EEEES
T ss_pred             EEEEC
Confidence            88765

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=94.54  E-value=3.2  Score=39.17  Aligned_cols=215  Identities=13%  Similarity=0.060  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ...-.+.++.+.++|++.||+.... +    .-.+.+++.+.+++ .++++..+...... ......+.......-+...
T Consensus        40 ~~~~~~~l~~~~~~G~~~vEl~~~~-~----~~~~~~~~~~~l~~-~gl~~~~~~~~~p~-~~~~~~l~~~d~~~r~~~~  112 (290)
T 2zvr_A           40 KGDLRKGMELAKRVGYQAVEIAVRD-P----SIVDWNEVKILSEE-LNLPICAIGTGQAY-LADGLSLTHPNDEIRKKAI  112 (290)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECSC-G----GGSCHHHHHHHHHH-HTCCEEEEECTHHH-HTTCCCTTCSSHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCCCEEEEcCCC-c----chhhHHHHHHHHHH-cCCeEEEEeccCcc-ccCCCCCCCCCHHHHHHHH
Confidence            3455677788888999999997642 1    11355666666654 35566444331100 0000000000000000000


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      ....+.++.|.+.|++.|.......      ..+.+.++.++++.+.++.+-+..-+|...+...-..+...-.+++.+.
T Consensus       113 ~~~~~~i~~A~~lG~~~v~~~~~g~------~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~~~~  186 (290)
T 2zvr_A          113 ERVVKHTEVAGMFGALVIIGLVRGR------REGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTIDDAL  186 (290)
T ss_dssp             HHHHHHHHHHHHHTCEEEESGGGCC------CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEecCCCC------CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHHHHH
Confidence            0123477888889999887221110      0123455555555554443322221144334321001112224677777


Q ss_pred             HHHHHHHHCCcC--EEEEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          307 YVAKELHDMGCF--EISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       307 ~~a~~l~~~Gad--~I~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ++++.+   +.+  .+++ |+.=...- ....+.++.+.    +-...+|.||...                     .  
T Consensus       187 ~l~~~~---~~~~vgl~~-D~~h~~~~g~d~~~~l~~~~----~~i~~vHl~D~~r---------------------~--  235 (290)
T 2zvr_A          187 RILRKI---NSNRVGILA-DTFHMNIEEVNIPESLKRAG----EKLYHFHVADSNR---------------------W--  235 (290)
T ss_dssp             HHHHHH---CCTTEEEEE-EHHHHHHHCSSHHHHHHHHG----GGEEEEEECCTTS---------------------S--
T ss_pred             HHHHHc---CCCCEEEEE-ehhHhhhcCCCHHHHHHHhh----ccEEEEEEcCCCC---------------------C--
Confidence            777655   322  3333 65311110 11223333332    2236789998510                     1  


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                           .+| .|..+.+.++..|+..|++
T Consensus       236 -----~~G-~G~id~~~~~~~L~~~gy~  257 (290)
T 2zvr_A          236 -----APG-CGHFDFRSVFNTLKEIGYN  257 (290)
T ss_dssp             -----STT-SSCCCHHHHHHHHHHTTCC
T ss_pred             -----CCC-CcccCHHHHHHHHHHcCCC
Confidence                 122 5789999999999987664

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=94.54  E-value=0.29  Score=50.61  Aligned_cols=199  Identities=15%  Similarity=0.066  Sum_probs=122.0

Q ss_pred             hHHHHHHcCCCEEEEEecCC-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-----------
Q 012949          232 GFEAAIAAGAKEVAIFASAS-EA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-----------  296 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~S-d~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-----------  296 (452)
                      .++...++|+..|+|-+.+. +-   |...+.=.+.+++.+++..+...++..|.+..+ +..+- ..-           
T Consensus       172 tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~I-iARTD-a~aa~l~~s~~d~r  249 (435)
T 3lg3_A          172 LMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLL-IARTD-ADAADLLTSDCDPY  249 (435)
T ss_dssp             HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEE-EEEEC-TTTCCEESCCCCGG
T ss_pred             HHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEEcC-Cccccccccccccc
Confidence            78888999999999998864 21   111111136899999998777777666765321 11110 000           


Q ss_pred             -----CC----------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC--
Q 012949          297 -----EG----------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG--  359 (452)
Q Consensus       297 -----~~----------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G--  359 (452)
                           .+          +...+...+=++...+ |||.|.+-  .|.-+++++.++.+.++..+|...|.+-+--.+.  
T Consensus       250 D~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E--~~~~~~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~  326 (435)
T 3lg3_A          250 DREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCE--TSTPDLALAKRFADAVHAQFPGKLLAYNCSPSFNWK  326 (435)
T ss_dssp             GGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHH
T ss_pred             cchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEec--CCCCCHHHHHHHHHHhccccCCeEEEeCCCCCcccc
Confidence                 00          1234555555666667 99999882  2456899999999999988997656653332232  


Q ss_pred             --cH---HHHH-HHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHHHHhCC
Q 012949          360 --QS---LPNI-LISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFINKHLGR  432 (452)
Q Consensus       360 --lA---~ANa-LaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~~~~g~  432 (452)
                        +.   +++. -.--++|+.++=.++.|+        ++-+.++++++..+.. -|..   .....++--++..+..|+
T Consensus       327 ~~~~d~~~~~f~~eLa~lG~~~v~~~la~~--------raa~~a~~~~a~~~~~~~gm~---ayve~~Q~~e~~~~~~g~  395 (435)
T 3lg3_A          327 KNLTDQQIASFQDELSAMGYKYQFITLAGI--------HSMWFNMFDLAHAYAQGEGMK---HYVEKVQQPEFASVDRGY  395 (435)
T ss_dssp             HHSCHHHHHHHHHHHHHTTEEEEEETTHHH--------HHHHHHHHHHHHHHHHSCHHH---HHHHHTHHHHHTTGGGTC
T ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEeCcHHH--------HHHHHHHHHHHHHHHhhCCHH---HHHHHHHHHHHhhhccCc
Confidence              11   1221 222258999999999888        7788999999888876 3321   111212222222345677


Q ss_pred             CCCCCcccccchhh
Q 012949          433 PSGSKTAIALNRIA  446 (452)
Q Consensus       433 ~~p~~~pi~G~~vf  446 (452)
                      ..-.++-.+|.+-|
T Consensus       396 ~~~~hq~~~G~~y~  409 (435)
T 3lg3_A          396 TFASHQQEVGTGYF  409 (435)
T ss_dssp             CTTSHHHHTTHHHH
T ss_pred             eeeecccccccchH
Confidence            76666666666554

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=94.53  E-value=4.1  Score=40.66  Aligned_cols=185  Identities=20%  Similarity=0.269  Sum_probs=104.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|-+.--...  .+.+.+  ..++++.+.+..+-++++++    .+.+            
T Consensus        48 ~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE--~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~------------  113 (343)
T 2v9d_A           48 QLDKPGTAALIDDLIKAGVDGLFFLGSGGE--FSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNAR------------  113 (343)
T ss_dssp             SBCHHHHHHHHHHHHHTTCSCEEESSTTTT--GGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHH------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCccccC--hhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHH------------
Confidence            479999999999999999998877422211  233322  22333333322222333332    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +.        .+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-+..+.   ...++++..|=     .|. 
T Consensus       114 --ea--------i~la~~A~~~Gadavlv~~P~---Y----~~~s~~~l~~~f~~VA---~a~~lPiilYn-----~P~~  168 (343)
T 2v9d_A          114 --ET--------IELSQHAQQAGADGIVVINPY---Y----WKVSEANLIRYFEQVA---DSVTLPVMLYN-----FPAL  168 (343)
T ss_dssp             --HH--------HHHHHHHHHHTCSEEEEECCS---S----SCCCHHHHHHHHHHHH---HTCSSCEEEEE-----CHHH
T ss_pred             --HH--------HHHHHHHHhcCCCEEEECCCC---C----CCCCHHHHHHHHHHHH---HhcCCCEEEEe-----Cchh
Confidence              11        224566778999999887652   1    2235566665554443   34577876433     232 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE-EEeCCCcCcHHHHHHHHHHcCCC
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~-vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                       ....+++.+.++++   +. ...+.++||.|-  ..++.++++.+...-++  +. +-..|+      ..+.++.+|++
T Consensus       169 tg~~l~~e~~~~La~---~~-pnIvgiKdssgd--~~~~~~l~~~~~~~~~~--f~v~~G~D~------~~l~~l~~Ga~  234 (343)
T 2v9d_A          169 TGQDLTPALVKTLAD---SR-SNIIGIKDTIDS--VAHLRSMIHTVKGAHPH--FTVLCGYDD------HLFNTLLLGGD  234 (343)
T ss_dssp             HSSCCCHHHHHHHHH---HC-TTEEEEEECCSC--HHHHHHHHHHHHHHCTT--CEEEESSGG------GHHHHHHTTCC
T ss_pred             cCcCCCHHHHHHHHH---hC-CCEEEEEeCCCC--HHHHHHHHHhcCCCCCC--EEEEECcHH------HHHHHHHCCCC
Confidence             22457788877764   22 569999999885  56677776655421122  33 344443      24567788975


Q ss_pred             EEeecccCCC
Q 012949          375 TVDCSVAGLG  384 (452)
Q Consensus       375 ~VD~Sv~GlG  384 (452)
                         +.|.|++
T Consensus       235 ---G~is~~a  241 (343)
T 2v9d_A          235 ---GAISASG  241 (343)
T ss_dssp             ---EECCGGG
T ss_pred             ---EEEeCHH
Confidence               5555443

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=94.51  E-value=0.24  Score=48.85  Aligned_cols=218  Identities=13%  Similarity=0.101  Sum_probs=127.2

Q ss_pred             HHHHHHCCCCEEEEecC-CC-CCccccc--CCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSF-VS-PKWVPQL--ADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~s-~~~~p~~--~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++.++++|++.|=+|+. .+ ....|-.  -..++++..++.+. .+.+++++.. .      .+|+. +.++.+     
T Consensus        32 A~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~-d------~Gyg~-~~~v~~-----   98 (295)
T 1s2w_A           32 ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDA-D------TGYGN-FNNARR-----   98 (295)
T ss_dssp             HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEEC-C------SSCSS-HHHHHH-----
T ss_pred             HHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecC-C------CCCCC-HHHHHH-----
Confidence            56777889999999943 11 1122321  12366777776653 3445544421 1      23543 233332     


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcC------CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNIN------CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~------~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                         .+++..++|+.-|+|-.....-..- .++      .+.++..++++.+++....-++.|.+---. +   . .....
T Consensus        99 ---~v~~l~~aGaagv~iED~~~~k~cg-H~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda-~---~-a~~g~  169 (295)
T 1s2w_A           99 ---LVRKLEDRGVAGACLEDKLFPKTNS-LHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEA-F---I-AGWGL  169 (295)
T ss_dssp             ---HHHHHHHTTCCEEEEECBCC---------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECT-T---T-TTCCH
T ss_pred             ---HHHHHHHcCCcEEEECCCCCCcccc-ccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehH-H---h-ccccH
Confidence               5677778999999999876431110 011      467788888766655444445555431110 0   0 11235


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +...+=++.+.++|||.|.+-=  |+-+++.+.++.+.+...+|.   -+- -..+|.-.  .-.--++|+++|-....+
T Consensus       170 ~~ai~Ra~ay~eAGAd~i~~e~--~~~~~~~~~~i~~~~~~~~P~---i~~-~~~~~~~~--~~eL~~lGv~~v~~~~~~  241 (295)
T 1s2w_A          170 DEALKRAEAYRNAGADAILMHS--KKADPSDIEAFMKAWNNQGPV---VIV-PTKYYKTP--TDHFRDMGVSMVIWANHN  241 (295)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECC--CSSSSHHHHHHHHHHTTCSCE---EEC-CSTTTTSC--HHHHHHHTCCEEEECSHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEcC--CCCCHHHHHHHHHHcCCCCCE---EEe-CCCCCCCC--HHHHHHcCCcEEEEChHH
Confidence            7788888899999999999951  445678888888877643453   221 11233222  334446899999888777


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      +        |+-+.++++++..++..|
T Consensus       242 ~--------raa~~a~~~~~~~i~~~g  260 (295)
T 1s2w_A          242 L--------RASVSAIQQTTKQIYDDQ  260 (295)
T ss_dssp             H--------HHHHHHHHHHHHHHHHHS
T ss_pred             H--------HHHHHHHHHHHHHHHHcC
Confidence            6        667888899888887644

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*

Probab=94.46  E-value=0.66  Score=44.56  Aligned_cols=142  Identities=10%  Similarity=0.039  Sum_probs=74.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCC-CH----HHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINC-SI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~-s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      +.++.|.+.|++.|.+... +.. -....+. +.    +...+.+.++.++|++.|+.+.  +...-..+...-.+++.+
T Consensus       111 ~~i~~A~~lG~~~v~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~~~~~~~~~~~  186 (309)
T 2hk0_A          111 RTLSNVAKLDIHTIGGALH-SYW-PIDYSQPVDKAGDYARGVEGINGIADFANDLGINLC--IEVLNRFENHVLNTAAEG  186 (309)
T ss_dssp             HHHHHHHHTTCCEEEECTT-SCS-SCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE--EECCCTTTCSSCCSHHHH
T ss_pred             HHHHHHHHcCCCEEEeecc-ccc-cccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE--EeecccccccccCCHHHH
Confidence            4778888999999885431 000 0000011 33    3445566677788999998754  332110011122467777


Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      .++++.+-.- --.+++ |+.=...- ....+.++.+.   + --..+|+||...                   .  -  
T Consensus       187 ~~l~~~v~~~-~vg~~~-D~~H~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~r-------------------~--~--  237 (309)
T 2hk0_A          187 VAFVKDVGKN-NVKVML-DTFHMNIEEDSFGDAIRTAG---P-LLGHFHTGESNR-------------------R--V--  237 (309)
T ss_dssp             HHHHHHHTCT-TEEEEE-EHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCTTS-------------------C--C--
T ss_pred             HHHHHHcCCC-CeEEEE-ehhhHhhcCcCHHHHHHHHH---h-hEEEEEeCCCCC-------------------C--C--
Confidence            7777655311 113333 65311110 11223333332   2 236789998621                   0  1  


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          385 GCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                           +| .|..+.+.++..|+..|++
T Consensus       238 -----~G-~G~id~~~~~~~L~~~gy~  258 (309)
T 2hk0_A          238 -----PG-KGRMPWHEIGLALRDINYT  258 (309)
T ss_dssp             -----TT-SSCCCHHHHHHHHHHTTCC
T ss_pred             -----Cc-CCccCHHHHHHHHHHcCCC
Confidence                 22 5789999999999986654

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=94.40  E-value=0.29  Score=50.64  Aligned_cols=84  Identities=13%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             HhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +.++...++|+.+|.+-+ +.+|... ..+|+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+.
T Consensus       154 e~l~~L~~~G~~rislGvQS~~~~~l-~~i~R~--~~~~~~~~ai~~~r~~G~~~v~~dlI--~GlPge---t~e~~~~t  225 (457)
T 1olt_A          154 DVLDHLRAEGFNRLSMGVQDFNKEVQ-RLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAFT  225 (457)
T ss_dssp             HHHHHHHHTTCCEEEEEEECCCHHHH-HHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeeccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--cCCCCC---CHHHHHHH
Confidence            477888899999998876 4444333 234432  2245566778999999998 887776  566655   47888889


Q ss_pred             HHHHHHCCcCEEEE
Q 012949          309 AKELHDMGCFEISL  322 (452)
Q Consensus       309 a~~l~~~Gad~I~L  322 (452)
                      ++.+.+.+++.|.+
T Consensus       226 l~~~~~l~~~~i~~  239 (457)
T 1olt_A          226 LKRVAELNPDRLSV  239 (457)
T ss_dssp             HHHHHHHCCSEEEE
T ss_pred             HHHHHhcCcCEEEe
Confidence            99999999998765

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=94.35  E-value=0.89  Score=45.20  Aligned_cols=141  Identities=18%  Similarity=0.035  Sum_probs=90.1

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r  299 (452)
                      +..+.|.++|.|.|.|-..-        |+..  .....|-|.++-.+.+.++++.+|+. .++|.+-|+..-  ...+.
T Consensus       148 ~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~--~~~~g  225 (338)
T 1z41_A          148 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASD--YTDKG  225 (338)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCC--CSTTS
T ss_pred             HHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcc--cCCCC
Confidence            35567778999999886542        2221  12235667777777777888877764 666665565321  11234


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcC--C---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcC-
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIG--V---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMG-  372 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G--~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aG-  372 (452)
                      .+.+...++++.+.++|++.|.+.+..-  .   ..|..-.++++.+++.+.. +|..=    -|. -...+..+++.| 
T Consensus       226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~----Ggi~s~~~a~~~l~~G~  300 (338)
T 1z41_A          226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADM-ATGAV----GMITDGSMAEEILQNGR  300 (338)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCC-EEEEC----SSCCSHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCC-CEEEE----CCCCCHHHHHHHHHcCC
Confidence            6788899999999999999999876421  1   1222234667778877643 44432    122 357778889998 


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      ||.|-.
T Consensus       301 aD~V~i  306 (338)
T 1z41_A          301 ADLIFI  306 (338)
T ss_dssp             CSEEEE
T ss_pred             ceEEee
Confidence            887643

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=94.20  E-value=0.95  Score=45.27  Aligned_cols=140  Identities=21%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~  297 (452)
                      +..++|.++|.|.|.|-.+-        |+..  ....+|-|.++=.+.+.++++.+|+.   .+.|.+-|+....  ..
T Consensus       156 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~--~~  233 (349)
T 3hgj_A          156 EGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW--GE  233 (349)
T ss_dssp             HHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCC--ST
T ss_pred             HHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccc--cC
Confidence            35567788999998886542        2221  12235677887778888888888874   3446555553210  12


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcC--CcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGD--TIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQ  370 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~  370 (452)
                      +-.+++...++++.+.++|+|.|.+..  +...    ..|..-.++++.+++.++. +|..=.    |. -...+..+++
T Consensus       234 ~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~G----gi~t~e~a~~~l~  308 (349)
T 3hgj_A          234 GGWSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGL-RTGAVG----LITTPEQAETLLQ  308 (349)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCC-EEEECS----SCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCc-eEEEEC----CCCCHHHHHHHHH
Confidence            245778899999999999999999874  1111    1132334677888887643 443321    11 2567788899


Q ss_pred             cC-CCEEe
Q 012949          371 MG-ISTVD  377 (452)
Q Consensus       371 aG-a~~VD  377 (452)
                      .| ||.|-
T Consensus       309 ~G~aD~V~  316 (349)
T 3hgj_A          309 AGSADLVL  316 (349)
T ss_dssp             TTSCSEEE
T ss_pred             CCCceEEE
Confidence            99 88664

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=94.19  E-value=0.7  Score=47.20  Aligned_cols=179  Identities=13%  Similarity=0.122  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.+.-+++++.+.++|++.|-.+.+-   +|...-.+ . ++-+..+++.. ...+++++.-..                
T Consensus       154 s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl-~-~egl~~L~~~~~~~Gl~~~te~~d----------------  215 (385)
T 3nvt_A          154 SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGL-G-LEGLKILKRVSDEYGLGVISEIVT----------------  215 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCC-T-HHHHHHHHHHHHHHTCEEEEECCS----------------
T ss_pred             CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCC-C-HHHHHHHHHHHHHcCCEEEEecCC----------------
Confidence            78899999999999999999998763   22211111 1 12233343321 223444442111                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-C
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-I  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~  300 (452)
                              ...++.+.+. ++.+.|....-.                + .++++++.+.|.+|.  |+.       +. .
T Consensus       216 --------~~~~~~l~~~-vd~lkIgs~~~~----------------n-~~LL~~~a~~gkPVi--lk~-------G~~~  260 (385)
T 3nvt_A          216 --------PADIEVALDY-VDVIQIGARNMQ----------------N-FELLKAAGRVDKPIL--LKR-------GLSA  260 (385)
T ss_dssp             --------GGGHHHHTTT-CSEEEECGGGTT----------------C-HHHHHHHHTSSSCEE--EEC-------CTTC
T ss_pred             --------HHHHHHHHhh-CCEEEECccccc----------------C-HHHHHHHHccCCcEE--Eec-------CCCC
Confidence                    1266677666 898887643211                1 155577778899986  442       23 6


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCC--cCCCc-HHHHHH--HHHHHHHhCCCccE-EEEeCC--CcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDT--IGVGT-PGTVVP--MLEAVMAVVPVEKL-AVHLHD--TYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT--~G~~~-P~~v~~--li~~l~~~~p~~~l-~vH~Hn--d~GlA~ANaLaAl~aG  372 (452)
                      +++.+...++.+.+.|...|.|+.-  ..+-+ |....+  .+..+++.+.. || .=|.|.  +..+..+-+++|+.+|
T Consensus       261 t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~~~~ldl~~i~~lk~~~~l-pV~~D~th~~G~r~~v~~~a~AAvA~G  339 (385)
T 3nvt_A          261 TIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDISAVPILKKETHL-PVMVDVTHSTGRKDLLLPCAKAALAIE  339 (385)
T ss_dssp             CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBSS-CEEEEHHHHHCCGGGHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccccCHHHHHHHHHhcCC-CEEEcCCCCCCccchHHHHHHHHHHhC
Confidence            7899999999999999987777774  33322 222111  25567775532 34 447775  3556667899999999


Q ss_pred             CC--EEee
Q 012949          373 IS--TVDC  378 (452)
Q Consensus       373 a~--~VD~  378 (452)
                      |+  .|+.
T Consensus       340 A~gl~iE~  347 (385)
T 3nvt_A          340 ADGVMAEV  347 (385)
T ss_dssp             CSEEEEEB
T ss_pred             CCEEEEEe
Confidence            99  8876

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=94.17  E-value=3.9  Score=38.65  Aligned_cols=212  Identities=13%  Similarity=0.043  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCC--ceeEEe--cchhhhhhhhhhhhhccchhh
Q 012949          147 TGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGA--RLPVLT--PNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       147 ~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~--~l~~l~--~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++-++.+.+.|.|.||+-......     .+.+++.+.++.+...  .++.+.  +...+     =|......+  
T Consensus        16 ~~e~~~~~~~~~~~~~D~vElRvD~l~~-----~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~e-----GG~~~~~~~--   83 (238)
T 1sfl_A           16 IEETLIQKINHRIDAIDVLELRIDQFEN-----VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ-----GGYGQFTND--   83 (238)
T ss_dssp             --CHHHHHHHHTTTTCSEEEEECTTSTT-----CCHHHHHHHHHHHC---CCSEEEEECCBGGG-----TSCBCCCHH--
T ss_pred             HHHHHHHHHHhhhcCCCEEEEEeccccc-----CCHHHHHHHHHHHHHhccCCCEEEEeecccc-----CCCCCCCHH--
Confidence            3455566777778899999998543221     1445555555443221  234332  21110     000000000  


Q ss_pred             hhhhhccHHhHHHHHHc-CCCEEEEEecC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAA-GAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~-Gi~~V~i~~s~--Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                           .+.+-++.+++. +++.|.|-...  .+               +.+.++++.+++.|.+|.+  |+-.   +...
T Consensus        84 -----~~~~ll~~~~~~~~~d~iDvEl~~~~~~---------------~~~~~l~~~~~~~~~kvI~--S~Hd---f~~t  138 (238)
T 1sfl_A           84 -----SYLNLISDLANINGIDMIDIEWQADIDI---------------EKHQRIITHLQQYNKEVII--SHHN---FEST  138 (238)
T ss_dssp             -----HHHHHHHHGGGCTTCCEEEEECCTTSCH---------------HHHHHHHHHHHHTTCEEEE--EEEE---SSCC
T ss_pred             -----HHHHHHHHHHHhCCCCEEEEEccCCCCh---------------HHHHHHHHHHHhcCCEEEE--EecC---CCCC
Confidence                 123456777777 69999987754  33               3345677888898988763  3211   1122


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+.+.+.+..+.+.+.|||.+.|+=+.  -++.++..++....+.  .+..|+-.  =+.-.++.-.-+.+-..|-...-
T Consensus       139 p~~~el~~~~~~~~~~gaDivKia~~a--~~~~D~l~ll~~~~~~~~~~~~P~I~--~~MG~~G~~SRi~~~~~GS~~tf  214 (238)
T 1sfl_A          139 PPLDELQFIFFKMQKFNPEYVKLAVMP--HNKNDVLNLLQAMSTFSDTMDCKVVG--ISMSKLGLISRTAQGVFGGALTY  214 (238)
T ss_dssp             CCHHHHHHHHHHHHTTCCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSEEEE--EECTGGGHHHHHTGGGGTBCEEE
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEEecC--CCHHHHHHHHHHHHHHhhcCCCCEEE--EECCCCchHHHHHHHHhCCCeee
Confidence            235788889999999999999997664  4578888887765542  23334332  22333445566666678877888


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +++..    +-   ..|+.+.+++...|+
T Consensus       215 ~~l~~----~s---APGQl~~~el~~~l~  236 (238)
T 1sfl_A          215 GCIGE----PQ---APGQIDVTDLKAQVT  236 (238)
T ss_dssp             EBSSC----CS---STTCCBHHHHHHHHT
T ss_pred             cCCCC----CC---CCCCCCHHHHHHHHH
Confidence            87742    33   455999999987765

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=94.11  E-value=1.2  Score=43.11  Aligned_cols=165  Identities=16%  Similarity=0.138  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      +-.++++...+.|...|.+-..  ++|.   .-..+.+..+++..  .++++.-..                ++      
T Consensus        73 ~p~~~A~~y~~~GA~~isvltd--~~~f---~Gs~~~l~~ir~~v--~lPvl~kdf----------------ii------  123 (272)
T 3qja_A           73 DPAKLAQAYQDGGARIVSVVTE--QRRF---QGSLDDLDAVRASV--SIPVLRKDF----------------VV------  123 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECC--GGGH---HHHHHHHHHHHHHC--SSCEEEESC----------------CC------
T ss_pred             CHHHHHHHHHHcCCCEEEEecC--hhhc---CCCHHHHHHHHHhC--CCCEEECcc----------------cc------
Confidence            4578999999999999998421  1111   01123445555432  344443111                00      


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ....++.|.++|+|.|.+..+.-+              .+.+.++++.++++|+.+-+.+           .+++.+.  
T Consensus       124 d~~qv~~A~~~GAD~VlLi~a~l~--------------~~~l~~l~~~a~~lGl~~lvev-----------~t~ee~~--  176 (272)
T 3qja_A          124 QPYQIHEARAHGADMLLLIVAALE--------------QSVLVSMLDRTESLGMTALVEV-----------HTEQEAD--  176 (272)
T ss_dssp             SHHHHHHHHHTTCSEEEEEGGGSC--------------HHHHHHHHHHHHHTTCEEEEEE-----------SSHHHHH--
T ss_pred             CHHHHHHHHHcCCCEEEEecccCC--------------HHHHHHHHHHHHHCCCcEEEEc-----------CCHHHHH--
Confidence            112488999999999998654221              1345677899999999864221           2345443  


Q ss_pred             HHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          309 AKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                        .+.++|++.|.+.-......+..+ +.+..+++.+| +.++-.    -.|.. ..+.....++||+.|
T Consensus       177 --~A~~~Gad~IGv~~r~l~~~~~dl-~~~~~l~~~v~~~~pvVa----egGI~t~edv~~l~~~Gadgv  239 (272)
T 3qja_A          177 --RALKAGAKVIGVNARDLMTLDVDR-DCFARIAPGLPSSVIRIA----ESGVRGTADLLAYAGAGADAV  239 (272)
T ss_dssp             --HHHHHTCSEEEEESBCTTTCCBCT-THHHHHGGGSCTTSEEEE----ESCCCSHHHHHHHHHTTCSEE
T ss_pred             --HHHHCCCCEEEECCCcccccccCH-HHHHHHHHhCcccCEEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence              334569999988643221111111 23445555565 333332    23444 577778888998855

>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A

Probab=94.06  E-value=1  Score=45.47  Aligned_cols=125  Identities=17%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----------CCCCHHHHHHH
Q 012949          239 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAIPPSKVAYV  308 (452)
Q Consensus       239 ~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----------~r~d~e~l~~~  308 (452)
                      .|..-|.+=.|.          .+.||.++..++++++|++.|+.|.+.|-..-|.+|.          -.++|+...++
T Consensus       136 ~gFtSVMiDgS~----------~p~eENI~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~f  205 (358)
T 1dos_A          136 PLFSSHMIDLSE----------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYA  205 (358)
T ss_dssp             CSCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHH
T ss_pred             CCCceEeecCCC----------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccccCcCCCccccccccccccCCHHHHHHH
Confidence            457877654332          3568999999999999999999999888876444542          13899999999


Q ss_pred             HHHHHHCCcC-EEEEcCCcCC-----------CcHHHHHHHHHHHHHhC--CC--ccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          309 AKELHDMGCF-EISLGDTIGV-----------GTPGTVVPMLEAVMAVV--PV--EKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       309 a~~l~~~Gad-~I~L~DT~G~-----------~~P~~v~~li~~l~~~~--p~--~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      ++++.  |+| ...|+=++|.           +.|+...++=+.+++.+  |.  ++|.+|.  --|........|+..|
T Consensus       206 v~~tt--gvd~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~g~~~~~vpLVlHG--gSG~~~e~i~~ai~~G  281 (358)
T 1dos_A          206 YTELS--KISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHG--GSGSTAQEIKDSVSYG  281 (358)
T ss_dssp             HHHHH--TTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECS--CTTCCHHHHHHHHHTT
T ss_pred             HHHhc--CCChhceEEEecccccCccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCcEEEeC--CCCCCHHHHHHHHHCC
Confidence            88754  444 2233333332           23454444444444332  22  4676666  4588888999999999


Q ss_pred             CCEEe
Q 012949          373 ISTVD  377 (452)
Q Consensus       373 a~~VD  377 (452)
                      +.-|+
T Consensus       282 V~KiN  286 (358)
T 1dos_A          282 VVKMN  286 (358)
T ss_dssp             EEEEE
T ss_pred             CeEEE
Confidence            87554

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=94.01  E-value=1.2  Score=43.37  Aligned_cols=133  Identities=10%  Similarity=0.062  Sum_probs=81.4

Q ss_pred             HhHHHHHHcCCC-EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAK-EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~-~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +.++.+.++|+| .|.+-++.-.......++.+.+    .+.++++.+|+. +++|.+-+.     ++   .+.+.+.++
T Consensus       110 ~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e----~~~~iv~~vr~~~~~Pv~vKi~-----~~---~~~~~~~~~  177 (311)
T 1jub_A          110 AMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFE----ATEKLLKEVFTFFTKPLGVKLP-----PY---FDLVHFDIM  177 (311)
T ss_dssp             HHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHH----HHHHHHHHHTTTCCSCEEEEEC-----CC---CSHHHHHHH
T ss_pred             HHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHH----HHHHHHHHHHHhcCCCEEEEEC-----CC---CCHHHHHHH
Confidence            356777789999 7877553111111112333444    345667777765 667654332     22   366788889


Q ss_pred             HHHHHHCCcCEEEEcCCcC-------------------------CCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcH-
Q 012949          309 AKELHDMGCFEISLGDTIG-------------------------VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQS-  361 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G-------------------------~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA-  361 (452)
                      ++.+.++|+|.|.+.++.+                         ........++++.+++.++ .++|-.=+    |.. 
T Consensus       178 a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~G----GI~~  253 (311)
T 1jub_A          178 AEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTG----GIET  253 (311)
T ss_dssp             HHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEES----SCCS
T ss_pred             HHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEEC----CCCC
Confidence            9999999999999988752                         1111123567888888774 45554432    332 


Q ss_pred             HHHHHHHHHcCCCEEeec
Q 012949          362 LPNILISLQMGISTVDCS  379 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~S  379 (452)
                      -..+..++.+||+.|-..
T Consensus       254 ~~da~~~l~~GAd~V~vg  271 (311)
T 1jub_A          254 GQDAFEHLLCGATMLQIG  271 (311)
T ss_dssp             HHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEc
Confidence            246677788999987543

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=94.01  E-value=4.4  Score=38.80  Aligned_cols=234  Identities=15%  Similarity=0.050  Sum_probs=136.7

Q ss_pred             ccEEEeCCccccCCCCCC---CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH---HHHhccCCceeE
Q 012949          126 FVKIVEVGPRDGLQNEKN---TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRDLEGARLPV  199 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~---~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~---~i~~~~~~~l~~  199 (452)
                      .|+|-+.++..|.-..-.   .-+.++.+..++.+.+.|.|.||+-......    ..+.+++.+   .+++..+ .++.
T Consensus         7 ~~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~----~~~~~~v~~~l~~lr~~~~-~~Pi   81 (257)
T 2yr1_A            7 AIKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRA----IDDQERVLATANGLRNIAG-EIPI   81 (257)
T ss_dssp             CEEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT----TTCHHHHHHHHHHHHHHSS-SCCE
T ss_pred             eEEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccc----cCcHHHHHHHHHHHHHhcc-CCCE
Confidence            377777777666542211   2345666677777788999999997542211    123444444   3443331 2333


Q ss_pred             Ee--cchhhhhhhhhh-hhhccchhhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          200 LT--PNLKVILQRSIL-FQQCHASVISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       200 l~--~~~~~~i~r~~~-~~~~~~~~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      +.  +...+     =| |.....       -.+.+-++.+++.| ++.|.|-....+                .+.++++
T Consensus        82 I~T~Rt~~e-----GG~~~~~~~-------~~~~~ll~~~~~~g~~d~iDvEl~~~~----------------~~~~l~~  133 (257)
T 2yr1_A           82 LFTIRSERE-----GGQPIPLNE-------AEVRRLIEAICRSGAIDLVDYELAYGE----------------RIADVRR  133 (257)
T ss_dssp             EEECCCTTT-----TCCCCSSCH-------HHHHHHHHHHHHHTCCSEEEEEGGGTT----------------HHHHHHH
T ss_pred             EEEEeeccc-----CCCCCCCCH-------HHHHHHHHHHHHcCCCCEEEEECCCCh----------------hHHHHHH
Confidence            32  21110     00 000000       01334667888888 999998764322                2345678


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEE
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVH  353 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH  353 (452)
                      .+++.|.+|.+  |+-.   +....+.+.+.+..+.+.+.|||.+-|+=+.  -++.++..++....+.  .+..|+-.-
T Consensus       134 ~~~~~~~kvI~--S~Hd---f~~tP~~~el~~~~~~~~~~gaDivKia~~a--~s~~D~l~ll~~~~~~~~~~~~P~I~~  206 (257)
T 2yr1_A          134 MTEECSVWLVV--SRHY---FDGTPRKETLLADMRQAERYGADIAKVAVMP--KSPEDVLVLLQATEEARRELAIPLITM  206 (257)
T ss_dssp             HHHHTTCEEEE--EEEE---SSCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             HHHhCCCEEEE--EecC---CCCCcCHHHHHHHHHHHHhcCCCEEEEEecc--CCHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            88888988763  3211   1122235788889999999999999997664  4588888888765542  233344332


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcC
Q 012949          354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL  408 (452)
Q Consensus       354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~  408 (452)
                      +  .-.++...-+.+-..|-...-+++.   + +-|   .|+.+.+++...|+.+
T Consensus       207 ~--MG~~G~~SRi~~~~~GS~~Tf~~l~---~-~sA---PGQl~~~el~~~l~~l  252 (257)
T 2yr1_A          207 A--MGGLGAITRLAGWLFGSAVTFAVGN---Q-SSA---PGQIPIDDVRTVLSIL  252 (257)
T ss_dssp             E--CTTTTHHHHHHGGGGTBCEEECBSS---S-CSS---TTCCBHHHHHHHHHHH
T ss_pred             E--CCCCcchHHHHHHHhCCceEecCCC---C-CCC---CCCCCHHHHHHHHHHH
Confidence            2  2234456667777788777777773   3 333   5589999998777643

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=94.00  E-value=2.6  Score=40.58  Aligned_cols=142  Identities=8%  Similarity=0.047  Sum_probs=76.0

Q ss_pred             CccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cc
Q 012949          125 RFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PN  203 (452)
Q Consensus       125 ~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~  203 (452)
                      +++-+.=-|+||-.+.    .+   -.+.++.+.++|++.||+.......+.+  .+.+++.+.+++ .++++.++. +.
T Consensus        13 ~~~g~~~~s~~~~~~~----~~---~~~~l~~~a~~G~~~VEl~~~~~~~~~~--~~~~~~~~~l~~-~GL~v~~~~~~~   82 (303)
T 3l23_A           13 KEIGLQIYSLSQELYK----GD---VAANLRKVKDMGYSKLELAGYGKGAIGG--VPMMDFKKMAED-AGLKIISSHVNP   82 (303)
T ss_dssp             CCCEEEGGGGGGGGGS----SC---HHHHHHHHHHTTCCEEEECCEETTEETT--EEHHHHHHHHHH-TTCEEEEEECCC
T ss_pred             CceEEEEEEchhhhcc----CC---HHHHHHHHHHcCCCEEEeccccCcccCC--CCHHHHHHHHHH-cCCeEEEEeccc
Confidence            4566666788875442    13   3467778889999999997421110111  245666666655 456655443 21


Q ss_pred             hhhhhhhhh-----hhhh-ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          204 LKVILQRSI-----LFQQ-CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       204 ~~~~i~r~~-----~~~~-~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      ....+....     .+.+ .....++    ...+.++.|.+.|++.|.+......     ......+...+.+.++.++|
T Consensus        83 ~~~~~~~p~~~~~~~~~~~~~~~~~~----~~~~~i~~A~~lG~~~v~~~~~~~~-----~~~~~~~~~~~~l~~l~~~a  153 (303)
T 3l23_A           83 VDTSISDPFKAMIFKYSKEVTPKIME----YWKATAADHAKLGCKYLIQPMMPTI-----TTHDEAKLVCDIFNQASDVI  153 (303)
T ss_dssp             BCTTCSSTTTTBCCSCCTTTHHHHHH----HHHHHHHHHHHTTCSEEEECSCCCC-----CSHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcccccccccchhhHHHHHH----HHHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHH
Confidence            100000000     0000 0011111    1234778888999999987532110     00012345677788889999


Q ss_pred             HhCCCc--EE
Q 012949          278 KVLSIP--VR  285 (452)
Q Consensus       278 k~~G~~--V~  285 (452)
                      ++.|+.  +.
T Consensus       154 ~~~Gv~~~l~  163 (303)
T 3l23_A          154 KAEGIATGFG  163 (303)
T ss_dssp             HHTTCTTCEE
T ss_pred             HHCCCcceEE
Confidence            999998  75

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=93.95  E-value=0.54  Score=47.38  Aligned_cols=141  Identities=13%  Similarity=0.090  Sum_probs=88.7

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~  297 (452)
                      +..++|.++|.|.|.|-..-        |+..+  ...+|-|.++=.+.+.++++.+|+. |  +.|.+-|+..- ....
T Consensus       162 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~-~~~~  240 (363)
T 3l5l_A          162 DAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLE-YDGR  240 (363)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEEC-SSSC
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchh-cCCC
Confidence            35567788999999887541        33222  2235778887788888999998875 3  45655555321 0011


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTI--GV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQ  370 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~  370 (452)
                      +..+.+...++++.+.++|+|.|.+....  ..    ..|..-.++++.+++.++. +|..=    -|. -...+..+++
T Consensus       241 G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~----GgI~s~e~a~~~l~  315 (363)
T 3l5l_A          241 DEQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKL-PVTSA----WGFGTPQLAEAALQ  315 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTC-CEEEC----SSTTSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCC-cEEEe----CCCCCHHHHHHHHH
Confidence            11457788899999999999999886521  11    1132234567778877643 44331    122 2567788999


Q ss_pred             cC-CCEEe
Q 012949          371 MG-ISTVD  377 (452)
Q Consensus       371 aG-a~~VD  377 (452)
                      .| ||.|-
T Consensus       316 ~G~aD~V~  323 (363)
T 3l5l_A          316 ANQLDLVS  323 (363)
T ss_dssp             TTSCSEEE
T ss_pred             CCCccEEE
Confidence            99 88663

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=93.91  E-value=1.8  Score=42.49  Aligned_cols=141  Identities=18%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -.+.|.+.|+.-|-+.-.    +            +.   .+.+..+..+++|    +.+.|+|. +..+.+--+.-++.
T Consensus        79 lc~eA~~~g~aaVCV~P~----~------------V~---~a~~~L~~s~V~V----~tVigFP~-G~~~~~~Kv~Ea~~  134 (288)
T 3oa3_A           79 LCAEAKEYGFATVCVRPD----Y------------VS---RAVQYLQGTQVGV----TCVIGFHE-GTYSTDQKVSEAKR  134 (288)
T ss_dssp             HHHHHHHHTCSEEEECGG----G------------HH---HHHHHTTTSSCEE----EEEESTTT-SCSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEECHH----H------------HH---HHHHHcCCCCCeE----EEEeCCCC-CCCcHHHHHHHHHH
Confidence            456777789988877521    1            12   1222233335444    34466776 44556666667788


Q ss_pred             HHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC--cc--EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~--~~--l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.|||.|-+.=-+|.   ..-..+.+-|+.+++..+.  .+  |+-...++--.. ..+..|+++|||+|=+| .|++
T Consensus       135 Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~-~A~~ia~eaGADfVKTS-TGf~  212 (288)
T 3oa3_A          135 AMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEII-AGCVLSSLAGADYVKTS-TGFN  212 (288)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECC-CSSS
T ss_pred             HHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHH-HHHHHHHHcCCCEEEcC-CCCC
Confidence            88999999987766776   4557888889999887643  12  333334443333 24677889999999999 7765


Q ss_pred             CCCCCCCCCCcccHHHHHHHHH
Q 012949          385 GCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~  406 (452)
                      .        |++.+|++..+.+
T Consensus       213 ~--------~GAT~edv~lmr~  226 (288)
T 3oa3_A          213 G--------PGASIENVSLMSA  226 (288)
T ss_dssp             S--------CCCCHHHHHHHHH
T ss_pred             C--------CCCCHHHHHHHHH
Confidence            3        5677888765554

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=93.89  E-value=2.5  Score=38.67  Aligned_cols=174  Identities=10%  Similarity=0.076  Sum_probs=98.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSN  225 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~  225 (452)
                      ..+...++++.+.+.|.+.|++..             .+.++.+++..+..+.......         +...+. .+.  
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~~~-------------~~~i~~i~~~~~~pv~~~~~~~---------~~~~~~-~i~--   75 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRANT-------------KEDILAIKETVDLPVIGIVKRD---------YDHSDV-FIT--   75 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEES-------------HHHHHHHHHHCCSCEEEECBCC---------CTTCCC-CBS--
T ss_pred             CCccHHHHHHHHHHCCCeeeccCC-------------HHHHHHHHHhcCCCEEeeeccC---------CCcccc-ccC--
Confidence            557888999999999999998852             1345666655454432211100         000000 000  


Q ss_pred             hhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHH
Q 012949          226 LWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       226 ~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                        ...+.++.++++|++.|.+-...-.     +...       .+.++++.+|+.  |..+..  .         ..+++
T Consensus        76 --~~~~~i~~~~~~Gad~v~l~~~~~~-----~p~~-------~~~~~i~~~~~~~~~~~v~~--~---------~~t~~  130 (223)
T 1y0e_A           76 --ATSKEVDELIESQCEVIALDATLQQ-----RPKE-------TLDELVSYIRTHAPNVEIMA--D---------IATVE  130 (223)
T ss_dssp             --CSHHHHHHHHHHTCSEEEEECSCSC-----CSSS-------CHHHHHHHHHHHCTTSEEEE--E---------CSSHH
T ss_pred             --CcHHHHHHHHhCCCCEEEEeeeccc-----Cccc-------CHHHHHHHHHHhCCCceEEe--c---------CCCHH
Confidence              0234788899999999987653310     0000       123566777776  776541  1         12344


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCC------cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLGDT------IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT------~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~V  376 (452)
                      .    ++.+.++|+|.|.+.-.      .+......-.++++.+++.+. +++..    +=|. ...++..++++||+.|
T Consensus       131 e----~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~-ipvia----~GGI~~~~~~~~~~~~Gad~v  201 (223)
T 1y0e_A          131 E----AKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD-AKVIA----EGNVITPDMYKRVMDLGVHCS  201 (223)
T ss_dssp             H----HHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCC-SEEEE----ESSCCSHHHHHHHHHTTCSEE
T ss_pred             H----HHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCC-CCEEE----ecCCCCHHHHHHHHHcCCCEE
Confidence            3    34577899998875321      111102223457788887663 34443    3466 5788888999998866


Q ss_pred             ee
Q 012949          377 DC  378 (452)
Q Consensus       377 D~  378 (452)
                      =.
T Consensus       202 ~v  203 (223)
T 1y0e_A          202 VV  203 (223)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=93.89  E-value=1.1  Score=41.77  Aligned_cols=175  Identities=14%  Similarity=0.070  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +-.++++.+.+.|++.|.+-    .+.     +.. .. +.++.+++..+..+  ++-+.-                   
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~-----~~~-~~-~~i~~i~~~~~ipv--~v~ggI-------------------   84 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFG-----TGD-NR-ALIAEVAQAMDIKV--ELSGGI-------------------   84 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHT-----SCC-CH-HHHHHHHHHCSSEE--EEESSC-------------------
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhc-----CCC-hH-HHHHHHHHhcCCcE--EEECCc-------------------
Confidence            56788999999999999983    222     111 22 45566655434333  321110                   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec-CCCCC--CCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEG--AIP  301 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g-~p~~~--r~d  301 (452)
                         ...++++.++++|++.|.+-..                .+.+...+.+..++.|..+...+..-.| -..++  ..+
T Consensus        85 ---~~~~~~~~~l~~Gad~V~lg~~----------------~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~  145 (244)
T 1vzw_A           85 ---RDDDTLAAALATGCTRVNLGTA----------------ALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDG  145 (244)
T ss_dssp             ---CSHHHHHHHHHTTCSEEEECHH----------------HHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCC
T ss_pred             ---CCHHHHHHHHHcCCCEEEECch----------------HhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCC
Confidence               0124788999999999887532                2222223334445555444433332100 00011  111


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHc---CCCE
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM---GIST  375 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~a---Ga~~  375 (452)
                      . ...++++.+.++|++.|.+-+..  |.... --.++++.+++..+ +++..    +=|... .+...++++   ||+.
T Consensus       146 ~-~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g-~~~~~~~~i~~~~~-ipvia----~GGI~~~~d~~~~~~~~~~Gadg  218 (244)
T 1vzw_A          146 G-DLYETLDRLNKEGCARYVVTDIAKDGTLQG-PNLELLKNVCAATD-RPVVA----SGGVSSLDDLRAIAGLVPAGVEG  218 (244)
T ss_dssp             C-BHHHHHHHHHHTTCCCEEEEEC-------C-CCHHHHHHHHHTCS-SCEEE----ESCCCSHHHHHHHHTTGGGTEEE
T ss_pred             C-CHHHHHHHHHhCCCCEEEEeccCcccccCC-CCHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHHHHhhccCCCce
Confidence            1 34556777888999988876532  21111 12456666666543 34443    346664 788888888   8775


Q ss_pred             Ee
Q 012949          376 VD  377 (452)
Q Consensus       376 VD  377 (452)
                      |-
T Consensus       219 v~  220 (244)
T 1vzw_A          219 AI  220 (244)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=93.88  E-value=0.57  Score=43.83  Aligned_cols=219  Identities=16%  Similarity=0.085  Sum_probs=107.1

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.+.++|++.||+....... .+.-.+.+++.+.+++ .++++.++.....        |... +...+.......
T Consensus        19 ~~~l~~~~~~G~~~vEl~~~~~~~-~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~--------~~~~-~~~~~~~~~~~~   87 (281)
T 3u0h_A           19 VLYLDLARETGYRYVDVPFHWLEA-EAERHGDAAVEAMFQR-RGLVLANLGLPLN--------LYDS-EPVFLRELSLLP   87 (281)
T ss_dssp             HHHHHHHHHTTCSEECCCHHHHHH-HHHHHCHHHHHHHHHT-TTCEECCEECCSC--------TTSC-HHHHHHHHHTHH
T ss_pred             HHHHHHHHHcCCCEEEecHHHHHH-HhcccCHHHHHHHHHH-cCCceEEeccccc--------ccCC-CHHHHHHHHHHH
Confidence            456677788999999997531100 0011233444444443 3455544432211        1100 000110000123


Q ss_pred             HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec-----CCCCCCCCHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-----CPVEGAIPPSK  304 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g-----~p~~~r~d~e~  304 (452)
                      +.++.|.+.|++.|.+.... ++....    ...+...+.+.++.++|++.|+++.  +...-.     .+...-.+++.
T Consensus        88 ~~i~~A~~lG~~~v~~~~~p~~~~~~~----~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~~~~~~~~~~~~~~~~~~~  161 (281)
T 3u0h_A           88 DRARLCARLGARSVTAFLWPSMDEEPV----RYISQLARRIRQVAVELLPLGMRVG--LEYVGPHHLRHRRYPFVQSLAD  161 (281)
T ss_dssp             HHHHHHHHTTCCEEEEECCSEESSCHH----HHHHHHHHHHHHHHHHHGGGTCEEE--EECCCCGGGCCSSEECCCSHHH
T ss_pred             HHHHHHHHcCCCEEEEeecCCCCCcch----hhHHHHHHHHHHHHHHHHHcCCEEE--EEeccccccccccccccCCHHH
Confidence            47788889999999865321 110000    1234566777788899999998764  332100     00011236677


Q ss_pred             HHHHHHHHHHCCcCEEE-EcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          305 VAYVAKELHDMGCFEIS-LGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      +.++++.+   +.+.+. .-|+.=...-.  .+.. .+.+.+.+--..+|++|..+..         .+.       ..-
T Consensus       162 ~~~l~~~v---~~~~vg~~~D~~h~~~~g--~~~~-~~~~~~~~~i~~vHl~D~~~~~---------~~~-------~~~  219 (281)
T 3u0h_A          162 LKTFWEAI---GAPNVGALVDSYHWYTAG--EHED-DLAQLPPEKVVYVHINDTRDAP---------EDA-------HDG  219 (281)
T ss_dssp             HHHHHHHH---CCTTEEEEEEHHHHHHTT--CCHH-HHHTSCGGGEEEEEECBCSSCT---------TTC-------CTT
T ss_pred             HHHHHHHc---CCCCeeEEeehhHHHHcC--CCHH-HHHhcCcccEEEEEecCCCCCc---------ccc-------hhc
Confidence            77776654   333222 22543211100  0111 2223343334689999987732         010       001


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..  ..+| .|..+...++..|+..|++
T Consensus       220 ~~--~~~G-~G~id~~~~~~~L~~~gy~  244 (281)
T 3u0h_A          220 KR--LLPG-DGRIPLVPFLRGLYLAGYR  244 (281)
T ss_dssp             SC--BCTT-SSSSCHHHHHHHHHHHTCC
T ss_pred             cC--cCCC-CcCcCHHHHHHHHHHcCCC
Confidence            11  1133 5889999999999975543

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=93.85  E-value=0.27  Score=47.33  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=106.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d~e~l~~~a  309 (452)
                      +|+-.....-+|.+-+....+-++-+           +.+++.++.++++|+.|.      .|.. .+.......+.++.
T Consensus        29 ~d~Le~~g~yID~lKfg~Gt~~l~~~-----------~~l~eki~l~~~~gV~v~------~GGTl~E~~~~qg~~~~yl   91 (251)
T 1qwg_A           29 EDYLKVCGDYIDFVKFGWGTSAVIDR-----------DVVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFL   91 (251)
T ss_dssp             HHHHHHHGGGCSEEEECTTGGGGSCH-----------HHHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhhhcceEEecCceeeecCH-----------HHHHHHHHHHHHcCCeEE------CCcHHHHHHHHcCcHHHHH
Confidence            35555566779999998877665422           335688899999999875      2210 11111112556677


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CCCccEEEEeC-------CCcCcHHHHHHHHHHcCCCEE--eec
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLH-------DTYGQSLPNILISLQMGISTV--DCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p~~~l~vH~H-------nd~GlA~ANaLaAl~aGa~~V--D~S  379 (452)
                      +.+.+.|.+.|-+.|-.--+.++.-.++|+.+++. +.. ..++.--       -+...-+..+...++|||+.|  ++-
T Consensus        92 ~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~v-~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEar  170 (251)
T 1qwg_A           92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFMV-LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR  170 (251)
T ss_dssp             HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCEE-EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCEE-eeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeee
Confidence            88888899999999999999999999999999887 321 2333322       234455677888999999965  442


Q ss_pred             ----ccCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          380 ----VAGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       380 ----v~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                          ..|+=+      ..|+.-.+.+-..+..++
T Consensus       171 EsG~~iGi~~------~~g~~r~d~v~~i~~~l~  198 (251)
T 1qwg_A          171 ESGKGKGLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             cccCCcccCC------CCCCCcHHHHHHHHHhCC
Confidence                225656      788998888766665443

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=93.85  E-value=0.36  Score=45.74  Aligned_cols=167  Identities=12%  Similarity=0.060  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhcc-CCceeEE--ecchhhhhhhhhhhhhccch
Q 012949          148 GVKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLE-GARLPVL--TPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l--~~~~~~~i~r~~~~~~~~~~  220 (452)
                      ....+-++.+.++|++.+.+    |.|+     |.+.--..+++.+++.. +..+-+.  +-+-.               
T Consensus        18 ~~l~~~i~~~~~~g~d~iHvDvmDg~fv-----pn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~---------------   77 (227)
T 1tqx_A           18 SKLAEETQRMESLGAEWIHLDVMDMHFV-----PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPE---------------   77 (227)
T ss_dssp             GGHHHHHHHHHHTTCSEEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGG---------------
T ss_pred             hhHHHHHHHHHHcCCCEEEEEEEeCCcC-----cchhcCHHHHHHHHHhCCCCcEEEEEEEcCHH---------------
Confidence            34455667778899997444    4443     44433346778888765 5444432  11111               


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH---HHHhCCCcEEEEEEeeecCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH---AAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~---~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                                +-++..++  ++.+.+..-+.+.               .+.+.++   .+|+.|.++.+.+.     |. 
T Consensus        78 ----------~~i~~~~~--Ad~itvH~ea~~~---------------~~~~~i~~~~~i~~~G~k~gvaln-----p~-  124 (227)
T 1tqx_A           78 ----------KYVPLLKT--SNQLTFHFEALNE---------------DTERCIQLAKEIRDNNLWCGISIK-----PK-  124 (227)
T ss_dssp             ----------GGGGGCTT--SSEEEEEGGGGTT---------------CHHHHHHHHHHHHTTTCEEEEEEC-----TT-
T ss_pred             ----------HHHHHHHh--CCEEEEeecCCcc---------------CHHHHHHHHHHHHHcCCeEEEEeC-----CC-
Confidence                      02222233  6777666543321               1234556   89999999875442     21 


Q ss_pred             CCCCHHHHHHHHHHHHHCC-cCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMG-CFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~G-ad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                        ++.+.    ++.+.++| +|.|.+    +-..|...+....+.|+.+++..++.+|++    |-|....|+-.++++|
T Consensus       125 --tp~~~----~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~ti~~~~~aG  194 (227)
T 1tqx_A          125 --TDVQK----LVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHG  194 (227)
T ss_dssp             --SCGGG----GHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHT
T ss_pred             --CcHHH----HHHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEEE----ECCCCHHHHHHHHHcC
Confidence              22333    34445555 888732    233344445566777888888776545555    6688888999999999


Q ss_pred             CCEEe
Q 012949          373 ISTVD  377 (452)
Q Consensus       373 a~~VD  377 (452)
                      |+.+=
T Consensus       195 Ad~~V  199 (227)
T 1tqx_A          195 ANIIV  199 (227)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            99653

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=93.81  E-value=1.9  Score=41.56  Aligned_cols=181  Identities=16%  Similarity=0.196  Sum_probs=109.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCccc-ccCC-HHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVP-QLAD-ARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p-~~~D-~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      =+.+.-+++++.|.++|.+.+=.++|- |+-.| ++.. .++-++.+++. ....+++++--..                
T Consensus        34 ~~~e~a~~~a~~l~~~Ga~~vk~~~fk-prts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d----------------   96 (262)
T 1zco_A           34 ESREQIMKVAEFLAEVGIKVLRGGAFK-PRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMD----------------   96 (262)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSSC-CCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCC----------------
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEecc-cCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCC----------------
Confidence            378999999999999999999888762 21111 1100 02334444432 2223444432111                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~-  300 (452)
                              ...++.+.+. ++.+.|....-.             ..    .+++++-+.|.+|.  |+.       +.. 
T Consensus        97 --------~~~~~~l~~~-vd~~kIga~~~~-------------n~----~ll~~~a~~~kPV~--lk~-------G~~~  141 (262)
T 1zco_A           97 --------TRHVELVAKY-SDILQIGARNSQ-------------NF----ELLKEVGKVENPVL--LKR-------GMGN  141 (262)
T ss_dssp             --------GGGHHHHHHH-CSEEEECGGGTT-------------CH----HHHHHHTTSSSCEE--EEC-------CTTC
T ss_pred             --------HHhHHHHHhh-CCEEEECccccc-------------CH----HHHHHHHhcCCcEE--Eec-------CCCC
Confidence                    1267777777 898888653211             01    23344445899886  332       233 


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC----Cc-CCCcHHHHH-HHHHHHHHhCCCccE-EEEeCCCcCc---HHHHHHHHHH
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD----TI-GVGTPGTVV-PMLEAVMAVVPVEKL-AVHLHDTYGQ---SLPNILISLQ  370 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D----T~-G~~~P~~v~-~li~~l~~~~p~~~l-~vH~Hnd~Gl---A~ANaLaAl~  370 (452)
                      +++.+...++.+...|...+.|+-    +. ++ .+..+. ..+..+++.+.. +| ..=.|. .|.   ...-+.+|+.
T Consensus       142 t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~~y-~~~~v~L~ai~~lk~~~~~-pVi~d~sH~-~g~~~~v~~~~~aAva  218 (262)
T 1zco_A          142 TIQELLYSAEYIMAQGNENVILCERGIRTFETA-TRFTLDISAVPVVKELSHL-PIIVDPSHP-AGRRSLVIPLAKAAYA  218 (262)
T ss_dssp             CHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCS-SSSBCCTTHHHHHHHHBSS-CEEECSSTT-TCSGGGHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCc-ChhhcCHHHHHHHHhhhCC-CEEEEcCCC-CCccchHHHHHHHHHH
Confidence            789999999999999987777766    43 44 444444 456777776532 44 444454 233   2355777999


Q ss_pred             cCCC--EEeecc
Q 012949          371 MGIS--TVDCSV  380 (452)
Q Consensus       371 aGa~--~VD~Sv  380 (452)
                      .||+  +|+.=+
T Consensus       219 ~Ga~Gl~iE~H~  230 (262)
T 1zco_A          219 IGADGIMVEVHP  230 (262)
T ss_dssp             TTCSEEEEEBCS
T ss_pred             cCCCEEEEEecC
Confidence            9999  888764

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=93.78  E-value=5.2  Score=38.99  Aligned_cols=192  Identities=17%  Similarity=0.177  Sum_probs=107.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~~  216 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+. .+|-.+.++   +..+-++++++    .+.+           
T Consensus        21 ~iD~~~l~~lv~~li~~Gv~gl~v~GttG--E~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~-----------   86 (300)
T 3eb2_A           21 RVRADVMGRLCDDLIQAGVHGLTPLGSTG--EFAYLG-TAQREAVVRATIEAAQRRVPVVAGVASTSVA-----------   86 (300)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSCBBTTSGGG--TGGGCC-HHHHHHHHHHHHHHHTTSSCBEEEEEESSHH-----------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECcccc--CccccC-HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHH-----------
Confidence            57999999999999999999876532111  123342 233333333   32222333322    2222           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                         +        ..+-.+.|.++|+|-+.+..+-   +    ++.|.++.++-++.+.+   ..++++..|=     .|.
T Consensus        87 ---~--------ai~la~~a~~~Gadavlv~~P~---y----~~~~~~~l~~~f~~va~---a~~lPiilYn-----~P~  140 (300)
T 3eb2_A           87 ---D--------AVAQAKLYEKLGADGILAILEA---Y----FPLKDAQIESYFRAIAD---AVEIPVVIYT-----NPQ  140 (300)
T ss_dssp             ---H--------HHHHHHHHHHHTCSEEEEEECC---S----SCCCHHHHHHHHHHHHH---HCSSCEEEEE-----CTT
T ss_pred             ---H--------HHHHHHHHHHcCCCEEEEcCCC---C----CCCCHHHHHHHHHHHHH---HCCCCEEEEE-----Ccc
Confidence               1        1235567788999999887652   1    22355666655544443   3468876432     343


Q ss_pred             CC--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCC
Q 012949          297 EG--AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       297 ~~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      .+  ..+++.+.+++    +. ...+.++||.|  ...++.++++....     .+.+ -++|+      ..+.++.+|+
T Consensus       141 ~tg~~l~~~~~~~La----~~-pnIvgiKdssg--d~~~~~~~~~~~~~-----~f~v~~G~d~------~~~~~l~~G~  202 (300)
T 3eb2_A          141 FQRSDLTLDVIARLA----EH-PRIRYIKDAST--NTGRLLSIINRCGD-----ALQVFSASAH------IPAAVMLIGG  202 (300)
T ss_dssp             TCSSCCCHHHHHHHH----TS-TTEEEEEECSS--BHHHHHHHHHHHGG-----GSEEEECTTS------CHHHHHHTTC
T ss_pred             ccCCCCCHHHHHHHH----cC-CCEEEEEcCCC--CHHHHHHHHHHcCC-----CeEEEeCcHH------HHHHHHhCCC
Confidence            32  35666666553    33 57899999987  45666666654432     2333 44443      2366788897


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +   +.+.|          .+|..-+.++...+
T Consensus       203 ~---G~is~----------~an~~P~~~~~l~~  222 (300)
T 3eb2_A          203 V---GWMAG----------PACIAPRQSVALYE  222 (300)
T ss_dssp             C---EEEEG----------GGGTCHHHHHHHHH
T ss_pred             C---EEEeC----------hhhhhHHHHHHHHH
Confidence            6   44443          34555555555544

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=93.78  E-value=2.9  Score=38.84  Aligned_cols=209  Identities=11%  Similarity=0.025  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      -.+.++.+.++|++.||+....-    |.-.+.   +++.+.+++ .++++.++.+.....              ++   
T Consensus        32 ~~~~l~~~~~~G~~~vEl~~~~~----~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~--------------~~---   89 (257)
T 3lmz_A           32 LDTTLKTLERLDIHYLCIKDFHL----PLNSTDEQIRAFHDKCAA-HKVTGYAVGPIYMKS--------------EE---   89 (257)
T ss_dssp             HHHHHHHHHHTTCCEEEECTTTS----CTTCCHHHHHHHHHHHHH-TTCEEEEEEEEEECS--------------HH---
T ss_pred             HHHHHHHHHHhCCCEEEEecccC----CCCCCHHHHHHHHHHHHH-cCCeEEEEeccccCC--------------HH---
Confidence            35677788899999999975421    111122   233333332 456665554321100              00   


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                       ...+.++.|.+.|++.|.+...                 .+.+.++.++|++.|+.+.  +... +.+...-.+++.+.
T Consensus        90 -~~~~~i~~A~~lGa~~v~~~p~-----------------~~~l~~l~~~a~~~gv~l~--lEn~-~~~~~~~~~~~~~~  148 (257)
T 3lmz_A           90 -EIDRAFDYAKRVGVKLIVGVPN-----------------YELLPYVDKKVKEYDFHYA--IHLH-GPDIKTYPDATDVW  148 (257)
T ss_dssp             -HHHHHHHHHHHHTCSEEEEEEC-----------------GGGHHHHHHHHHHHTCEEE--EECC-CTTCSSSCSHHHHH
T ss_pred             -HHHHHHHHHHHhCCCEEEecCC-----------------HHHHHHHHHHHHHcCCEEE--EecC-CCcccccCCHHHHH
Confidence             0124788899999999997532                 1334567788999998754  3321 00111123566666


Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      ++++.   .....=..-|+.=...-. ...+.++.+..    -...+|.+|..+-           +-..   .-..+  
T Consensus       149 ~ll~~---~~p~vg~~~D~~h~~~~g~d~~~~l~~~~~----~i~~vHl~D~~~~-----------~~~~---~~~~~--  205 (257)
T 3lmz_A          149 VHTKD---LDPRIGMCLDVGHDLRNGCDPVADLKKYHT----RVFDMHIKDVTDS-----------SKAG---VGIEI--  205 (257)
T ss_dssp             HHHTT---SCTTEEEEEEHHHHHHTTCCHHHHHHHHGG----GEEEEEECEESCS-----------STTC---CEECT--
T ss_pred             HHHHh---CCCCccEEEchhhHHHcCCCHHHHHHHhhc----ceeEEeecccccc-----------cCCC---Ccccc--
Confidence            66652   233322233653221100 12333333332    2467999998761           0000   00112  


Q ss_pred             CCCCCCCCCcccHHHHHHHHHcCCCCC----CC------ChhhHHHHHHHHHHHh
Q 012949          386 CPYAKGASGNVATEDVVYMLSGLGVET----NV------DLRKLMLAGDFINKHL  430 (452)
Q Consensus       386 cP~a~graGNaalE~vv~~L~~~Gi~t----~i------Dl~~L~~la~~v~~~~  430 (452)
                            +.|..+...++..|+..|++-    .+      ..+.+.+..+++.+.+
T Consensus       206 ------G~G~id~~~~~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~s~~~l~~~l  254 (257)
T 3lmz_A          206 ------GRGKIDFPALIRMMREVNYTGMCSLEYEKDMKDPFLGIAESIGYFKAVS  254 (257)
T ss_dssp             ------TSSSCCHHHHHHHHHHTTCCSEEEECCCSSTTSCHHHHHHHHHHHHHHH
T ss_pred             ------CCCccCHHHHHHHHHHcCCCceEEEEecCCcCCHHHHHHHHHHHHHHHh
Confidence                  257899999999999866542    12      2345555555655543

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=93.75  E-value=2.3  Score=42.45  Aligned_cols=134  Identities=12%  Similarity=0.120  Sum_probs=90.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +-++.+.+-|+..+-++..  +. .-..-|.+.++.++.+.+.++.++ +.|+.++.-+++.      -..+++...+.+
T Consensus        85 ~~l~~~~~dgV~y~Eir~~--P~-~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~l  155 (343)
T 3rys_A           85 AYLERAAAGGVRHAEIMMD--PQ-AHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFL------RDMSEDSALEVL  155 (343)
T ss_dssp             HHHHHHHHTTEEEEEEEEC--HH-HHHTTTCCHHHHHHHHHHHHTTHHHHHSCEEEEEEEEE------TTSCHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEEec--HH-HhccCCCCHHHHHHHHHHHHHHHhhcCceeEEEEEEeC------CCCCHHHHHHHH
Confidence            4667788889998888763  32 222457899999998888887765 4788777544432      124567766776


Q ss_pred             HHHHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEEe
Q 012949          310 KELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVD  377 (452)
Q Consensus       310 ~~l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD  377 (452)
                      +.+.++  ++..|-|+-.-....|....+.++..++.  +.++.+|+..+.+  ..+...|+. .|+++|+
T Consensus       156 ~~a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rIg  222 (343)
T 3rys_A          156 DQLLAMHAPIAGIGLDSAEVGNPPSKFERLYQRAAEA--GLRRIAHAGEEGP--ASYITEALDVLHVERID  222 (343)
T ss_dssp             HHHHHTTCCCCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESSSSC--HHHHHHHHHTSCCSEEE
T ss_pred             HHHHhCCCCEEEEecCCcccCCCHHHHHHHHHHHHHC--CCeEEEeeCCCCC--HHHHHHHHhcCCcceee
Confidence            666655  35555554333344677788877766653  4578889987754  467788997 9999874

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=93.74  E-value=0.25  Score=47.97  Aligned_cols=178  Identities=17%  Similarity=0.137  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHH---hccCCceeEEe-cchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVR---DLEGARLPVLT-PNLKVI  207 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~---~~~~~~l~~l~-~~~~~~  207 (452)
                      .+.+.-+++++.|.+. +|.||+|.|-+ |. ..|..           ...+.+++.++   +..++.+..+. .|.   
T Consensus        27 P~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~---  102 (271)
T 1ujp_A           27 PSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNP---  102 (271)
T ss_dssp             SCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHH---
T ss_pred             CChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcH---
Confidence            4667888999999999 99999998654 31 00100           01122233333   22233332221 110   


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                      +     |           +....+.++.+.++|++.+-+..-..                +.+.+.++.++++|+.... 
T Consensus       103 v-----~-----------~~g~~~f~~~~~~aG~dGviv~Dl~~----------------ee~~~~~~~~~~~gl~~i~-  149 (271)
T 1ujp_A          103 V-----L-----------AWGPERFFGLFKQAGATGVILPDLPP----------------DEDPGLVRLAQEIGLETVF-  149 (271)
T ss_dssp             H-----H-----------HHCHHHHHHHHHHHTCCEEECTTCCG----------------GGCHHHHHHHHHHTCEEEC-
T ss_pred             H-----H-----------HhhHHHHHHHHHHcCCCEEEecCCCH----------------HHHHHHHHHHHHcCCceEE-
Confidence            0     0           11223578889999999776653221                2334667888999986431 


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc---CCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG---DTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~---DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      ++    .|   .++.+.+..+++..  .|  -+++.   -++|.-+.  ..+.++++.+++.. +.++.+=    +|...
T Consensus       150 li----ap---~s~~eri~~ia~~~--~g--fiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vG----fGI~t  213 (271)
T 1ujp_A          150 LL----AP---TSTDARIATVVRHA--TG--FVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVG----FGVSG  213 (271)
T ss_dssp             EE----CT---TCCHHHHHHHHTTC--CS--CEEEECC------------CCHHHHHHHHTTC-CSCEEEE----SCCCS
T ss_pred             Ee----CC---CCCHHHHHHHHHhC--CC--CEEEEecCcccCCCCCCCccHHHHHHHHHhhc-CCCEEEE----cCCCC
Confidence            22    11   23455555555432  23  23332   24444332  33467889998865 3455432    34443


Q ss_pred             HHHHHHHHcCCCEE
Q 012949          363 PNILISLQMGISTV  376 (452)
Q Consensus       363 ANaLaAl~aGa~~V  376 (452)
                      ......+ +|||.|
T Consensus       214 ~e~a~~~-~~ADgV  226 (271)
T 1ujp_A          214 KATAAQA-AVADGV  226 (271)
T ss_dssp             HHHHHHH-TTSSEE
T ss_pred             HHHHHHh-cCCCEE
Confidence            4444445 888744

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=93.69  E-value=2.3  Score=39.65  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeeccc
Q 012949          305 VAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      ..+.++.+.+.|++.|.+.++  .|..... -.++++.+++.++ +|+-.-    -|.. ..+....+++||+.|=+.=.
T Consensus       154 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~i~~l~~~~~-ipvia~----GGI~~~~d~~~~~~~Gadgv~vgsa  227 (252)
T 1ka9_F          154 AVEWAVKGVELGAGEILLTSMDRDGTKEGY-DLRLTRMVAEAVG-VPVIAS----GGAGRMEHFLEAFQAGAEAALAASV  227 (252)
T ss_dssp             HHHHHHHHHHHTCCEEEEEETTTTTTCSCC-CHHHHHHHHHHCS-SCEEEE----SCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred             HHHHHHHHHHcCCCEEEEecccCCCCcCCC-CHHHHHHHHHHcC-CCEEEe----CCCCCHHHHHHHHHCCCHHHHHHHH
Confidence            345667777789998888643  2332221 1556777777653 244332    3444 37777778889886532211


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLGVETNV  414 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~Gi~t~i  414 (452)
                      =+         .+.-+.+++...|+..|+....
T Consensus       228 l~---------~~~~~~~~~~~~l~~~~~~~~~  251 (252)
T 1ka9_F          228 FH---------FGEIPIPKLKRYLAEKGVHVRL  251 (252)
T ss_dssp             HH---------TTSSCHHHHHHHHHHTTCCBCC
T ss_pred             HH---------cCCCCHHHHHHHHHHCCCCcCC
Confidence            11         1234788888888888875543

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=93.65  E-value=5.5  Score=38.68  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=110.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH--HHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA--RDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~--e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+.+.  .++++.+.+..+-++++++    .+.+            
T Consensus        19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttG--E~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~------------   84 (292)
T 3daq_A           19 KVNLEALKAHVNFLLENNAQAIIVNGTTA--ESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTE------------   84 (292)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHH------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECcccc--ccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHH------------
Confidence            46889999999999999999987742111  12333221  2334433332222334332    1221            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +        ..+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-++.+.+.+   ++++..|=     .|. 
T Consensus        85 --~--------ai~la~~a~~~Gadavlv~~P~---y----~~~~~~~l~~~f~~ia~a~---~lPiilYn-----~P~~  139 (292)
T 3daq_A           85 --K--------SIQASIQAKALGADAIMLITPY---Y----NKTNQRGLVKHFEAIADAV---KLPVVLYN-----VPSR  139 (292)
T ss_dssp             --H--------HHHHHHHHHHHTCSEEEEECCC---S----SCCCHHHHHHHHHHHHHHH---CSCEEEEE-----CHHH
T ss_pred             --H--------HHHHHHHHHHcCCCEEEECCCC---C----CCCCHHHHHHHHHHHHHhC---CCCEEEEe-----cccc
Confidence              1        1234567788899999887652   1    2235566666565555444   78876433     232 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                       ....+++.+.++++    . ...+.++||.|-  ..++.    .+++..|+..+.+-.=+|     ...+.++.+|++ 
T Consensus       140 tg~~l~~~~~~~La~----~-pnivgiK~ssgd--~~~~~----~~~~~~~~~~f~v~~G~d-----~~~~~~l~~G~~-  202 (292)
T 3daq_A          140 TNMTIEPETVEILSQ----H-PYIVALKDATND--FEYLE----EVKKRIDTNSFALYSGND-----DNVVEYYQRGGQ-  202 (292)
T ss_dssp             HSCCCCHHHHHHHHT----S-TTEEEEEECCCC--HHHHH----HHHTTSCTTTSEEEESCG-----GGHHHHHHTTCC-
T ss_pred             cCCCCCHHHHHHHhc----C-CCEEEEEeCCCC--HHHHH----HHHHHCCCCCEEEEECCH-----HHHHHHHhcCCC-
Confidence             22456777766653    2 579999999884  34443    444555542344433333     235667889985 


Q ss_pred             EeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          376 VDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       376 VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                        +.+.|          .+|..-+.++...+.
T Consensus       203 --G~is~----------~~n~~P~~~~~l~~a  222 (292)
T 3daq_A          203 --GVISV----------IANVIPKEFQALYDA  222 (292)
T ss_dssp             --EEEES----------GGGTCHHHHHHHHHH
T ss_pred             --EEEeC----------HHHhhHHHHHHHHHH
Confidence              44443          345666666665553

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}

Probab=93.64  E-value=1.2  Score=43.32  Aligned_cols=143  Identities=8%  Similarity=0.025  Sum_probs=72.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChH--HHhh-h------------cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEA--FSKS-N------------INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~--~~~~-~------------~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                      +.++.|.+.|++.|..... +..  +... .            .....+...+.+.++.++|++.|+.+.  +...-..+
T Consensus       113 ~~i~~A~~lG~~~v~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~~~~~  189 (335)
T 2qw5_A          113 SRVDITAALGGEIMMGPIV-IPYGVFPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVKLA--IEPITHWE  189 (335)
T ss_dssp             HHHHHHHHTTCSEEEECCS-SCTTCCCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE--ECCCCTTT
T ss_pred             HHHHHHHHcCCCEEecccc-CccccccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeCCccc
Confidence            4778888999999832110 100  0000 0            001234556667778889999997654  33210001


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCcCEEE-EcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH
Q 012949          296 VEGAIPPSKVAYVAKELHDMGCFEIS-LGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       296 ~~~r~d~e~l~~~a~~l~~~Gad~I~-L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                      ...-.+++.+.+++   .+.+.+.+. .-||.=.    ..|..+.+.++.+...  +-...+|++|..            
T Consensus       190 ~~~~~t~~~~~~ll---~~v~~~~vgl~~D~~H~~~~g~d~~~~~~~l~~~~~~--~ri~~vHlkD~~------------  252 (335)
T 2qw5_A          190 TPGPNKLSQLIEFL---KGVKSKQVGVVIDSAHEILDGEGPEIFKTQVEYLAQQ--GRLHYVQVSPPD------------  252 (335)
T ss_dssp             CSSCCSHHHHHHHH---TTCCCTTEEEEEEHHHHHHHCCCHHHHHHHHHHHHHH--TCEEEEEECCTT------------
T ss_pred             ccccCCHHHHHHHH---HhcCCCCeeEEEecccchhccCChHHHHHHHHHhCCc--CCEEEEEECCCC------------
Confidence            11122455555544   334433222 2376311    2343332444444310  224689999852            


Q ss_pred             cCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          371 MGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       371 aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                            .   .-+|        .|.++.+.++..|+. |++
T Consensus       253 ------~---~~~G--------~G~id~~~i~~~L~~-gy~  275 (335)
T 2qw5_A          253 ------R---GALH--------TSWLPWKSFLTPIVK-VYD  275 (335)
T ss_dssp             ------S---SCSS--------SSCCCHHHHHHHHHH-HCC
T ss_pred             ------C---CCCC--------CCCcCHHHHHHHHHc-cCC
Confidence                  0   1222        478999999999998 764

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=93.64  E-value=0.88  Score=45.88  Aligned_cols=139  Identities=14%  Similarity=0.056  Sum_probs=86.2

Q ss_pred             hHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEee-ecCCCCC
Q 012949          232 GFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV-VGCPVEG  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~-~g~p~~~  298 (452)
                      ..+.|.++|.|.|.|-..-        |+..+  ....|-|.++=.+.+.++++.+|+. |- .|.+-|+.. +-.....
T Consensus       166 aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~  245 (365)
T 2gou_A          166 AALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVD  245 (365)
T ss_dssp             HHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCC
T ss_pred             HHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCC
Confidence            4556788999999986532        23211  2235667777777777777777763 33 555444421 0000112


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCc--C-CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTI--G-VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G-~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                      ..+.+...++++.+.++|++.|.+....  + ...|.   ++++.+++.++. +|..=.  ..  -..++..++++| ||
T Consensus       246 ~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~---~~~~~i~~~~~i-Pvi~~G--gi--~~~~a~~~l~~g~aD  317 (365)
T 2gou_A          246 ADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPV---SFKRALREAYQG-VLIYAG--RY--NAEKAEQAINDGLAD  317 (365)
T ss_dssp             SSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCH---HHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCS
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccH---HHHHHHHHHCCC-cEEEeC--CC--CHHHHHHHHHCCCcc
Confidence            3456788899999999999999886531  1 11232   567888888764 443322  12  367889999998 88


Q ss_pred             EEee
Q 012949          375 TVDC  378 (452)
Q Consensus       375 ~VD~  378 (452)
                      .|-.
T Consensus       318 ~V~i  321 (365)
T 2gou_A          318 MIGF  321 (365)
T ss_dssp             EEEC
T ss_pred             eehh
Confidence            7754

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.53  E-value=1.6  Score=41.76  Aligned_cols=101  Identities=14%  Similarity=0.023  Sum_probs=60.5

Q ss_pred             HHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-------------------CCCc
Q 012949          271 RAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------------GVGT  330 (452)
Q Consensus       271 ~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------------------G~~~  330 (452)
                      .+..+.+|+.|-+ ..++|.       .+..+.+...++++.+.++|+|.|-|.=..                   ...+
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~-------~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~   77 (262)
T 2ekc_A            5 SDKFTELKEKREKALVSYLM-------VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIR   77 (262)
T ss_dssp             HHHHHHHHHHTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCceEEEEec-------CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCC
Confidence            3444555555544 344453       233466788999999999999988773211                   1134


Q ss_pred             HHHHHHHHHHHHHhCCCccEEEEeCCC--cCcHHHH-HHHHHHcCCCEEee
Q 012949          331 PGTVVPMLEAVMAVVPVEKLAVHLHDT--YGQSLPN-ILISLQMGISTVDC  378 (452)
Q Consensus       331 P~~v~~li~~l~~~~p~~~l~vH~Hnd--~GlA~AN-aLaAl~aGa~~VD~  378 (452)
                      ...+.++++.+++.+|.+|+.+=.-.+  +..++.+ .-.+.++|++.+-.
T Consensus        78 ~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii  128 (262)
T 2ekc_A           78 FEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIV  128 (262)
T ss_dssp             HHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEE
Confidence            466778899999988677777621101  0111122 23366899986554

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=93.45  E-value=0.59  Score=43.02  Aligned_cols=157  Identities=17%  Similarity=0.097  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHCCCCEEEEecCC-CCCcccccCCH---HHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          150 KVELIRRLVSSGLPVVEATSFV-SPKWVPQLADA---RDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~---e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      -.+.++.+.+.|++.|++..+. ++.      ..   .+..+.++.+.. ....+++.                      
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~~------~~~~~~~~~~~l~~~~~~~~v~v~v~----------------------   84 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDAL------TGEARIKFAEKAQAACREAGVPFIVN----------------------   84 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTCC------CHHHHHHHHHHHHHHHHHHTCCEEEE----------------------
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCHh------HHHHHHHHHHHHHHHHHHcCCeEEEc----------------------
Confidence            5678889999999999998643 222      22   334444443211 11112221                      


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                            +.++.+.++|++.|++..  .+.        .    +.      +..+..|. +...++.         .+++.
T Consensus        85 ------~~~~~a~~~gad~v~l~~--~~~--------~----~~------~~~~~~g~-~~~~~s~---------~t~~e  128 (227)
T 2tps_A           85 ------DDVELALNLKADGIHIGQ--EDA--------N----AK------EVRAAIGD-MILGVSA---------HTMSE  128 (227)
T ss_dssp             ------SCHHHHHHHTCSEEEECT--TSS--------C----HH------HHHHHHTT-SEEEEEE---------CSHHH
T ss_pred             ------CHHHHHHHcCCCEEEECC--Ccc--------C----HH------HHHHhcCC-cEEEEec---------CCHHH
Confidence                  267788999999998732  221        0    11      12223454 2222221         23443


Q ss_pred             HHHHHHHHHHCCcCEEEE---cCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          305 VAYVAKELHDMGCFEISL---GDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L---~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                          ++.+.+.|+|.|.+   -||..-   ..|.. .++++.+++.++..++..    .-|....|...++++|++.|.+
T Consensus       129 ----~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~-~~~l~~~~~~~~~~pvia----~GGI~~~nv~~~~~~Ga~gv~v  199 (227)
T 2tps_A          129 ----VKQAEEDGADYVGLGPIYPTETKKDTRAVQG-VSLIEAVRRQGISIPIVG----IGGITIDNAAPVIQAGADGVSM  199 (227)
T ss_dssp             ----HHHHHHHTCSEEEECCSSCCCSSSSCCCCCT-THHHHHHHHTTCCCCEEE----ESSCCTTTSHHHHHTTCSEEEE
T ss_pred             ----HHHHHhCCCCEEEECCCcCCCCCCCCCCccC-HHHHHHHHHhCCCCCEEE----EcCCCHHHHHHHHHcCCCEEEE
Confidence                33455779999986   354321   12222 345566666555235544    2466667777888899998876


Q ss_pred             c
Q 012949          379 S  379 (452)
Q Consensus       379 S  379 (452)
                      .
T Consensus       200 g  200 (227)
T 2tps_A          200 I  200 (227)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.38  E-value=1.5  Score=42.97  Aligned_cols=188  Identities=13%  Similarity=0.082  Sum_probs=107.3

Q ss_pred             HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF  233 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i  233 (452)
                      +....+.|.+.||+=.--   .++.+.....+++.+++..++.+-+|++.+..    -+.|....-++|       .+++
T Consensus        52 a~~A~~gGAdRIELc~~l---~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgG----dF~Ys~~E~~~M-------~~dI  117 (287)
T 3iwp_A           52 AVNAERGGADRIELCSGL---SEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGG----DFLYSDREIEVM-------KADI  117 (287)
T ss_dssp             HHHHHHHTCSEEEECBCG---GGTCBCCCHHHHHHHHTTCCSCEEEECCSSSS----CSCCCHHHHHHH-------HHHH
T ss_pred             HHHHHHhCCCEEEECCCC---CCCCCCCCHHHHHHHHHhcCCCeEEEEecCCC----CcccCHHHHHHH-------HHHH
Confidence            455678999999996321   12333333456777776556667777755431    133443333333       4599


Q ss_pred             HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  313 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~  313 (452)
                      +.++++|++.|.+-.-..|-.+          -+++++++++.++..  .+.  +-.+|   |.. .|+   .+..+.+.
T Consensus       118 ~~~~~~GAdGvVfG~L~~dg~i----------D~~~~~~Li~~a~~l--~vT--FHRAF---D~~-~d~---~~Ale~Li  176 (287)
T 3iwp_A          118 RLAKLYGADGLVFGALTEDGHI----------DKELCMSLMAICRPL--PVT--FHRAF---DMV-HDP---MAALETLL  176 (287)
T ss_dssp             HHHHHTTCSEEEECCBCTTSCB----------CHHHHHHHHHHHTTS--CEE--ECGGG---GGC-SCH---HHHHHHHH
T ss_pred             HHHHHcCCCEEEEeeeCCCCCc----------CHHHHHHHHHHcCCC--cEE--EECch---hcc-CCH---HHHHHHHH
Confidence            9999999999988753333110          135566777777654  343  22223   111 133   35567778


Q ss_pred             HCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcHHHHHHHHHH-cCCCEEeecccC
Q 012949          314 DMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQSLPNILISLQ-MGISTVDCSVAG  382 (452)
Q Consensus       314 ~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD~Sv~G  382 (452)
                      ++|+++|--.-.  ..+..+=.++++.+.+.... +.|-.    .-|.-..|.-.-++ +|++.||.|...
T Consensus       177 ~lGvdrILTSG~--~~~a~~Gl~~Lk~Lv~~a~~rI~Ima----GGGV~~~Ni~~l~~~tG~~~~H~S~~~  241 (287)
T 3iwp_A          177 TLGFERVLTSGC--DSSALEGLPLIKRLIEQAKGRIVVMP----GGGITDRNLQRILEGSGATEFHCSARS  241 (287)
T ss_dssp             HHTCSEEEECTT--SSSTTTTHHHHHHHHHHHTTSSEEEE----CTTCCTTTHHHHHHHHCCSEEEECCEE
T ss_pred             HcCCCEEECCCC--CCChHHhHHHHHHHHHHhCCCCEEEE----CCCcCHHHHHHHHHhhCCCEEeECcCc
Confidence            889999887332  22222223344545444332 23332    34555667766666 999999999754

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=93.37  E-value=1.9  Score=41.18  Aligned_cols=141  Identities=21%  Similarity=0.211  Sum_probs=85.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -.+.|.+.|+.-|-+.-.    +            +..   +.+..+..+++|    +.+.|+|. +..+.+.-+.-++.
T Consensus        48 lc~eA~~~~~~aVcV~p~----~------------v~~---a~~~L~~s~v~v----~tVigFP~-G~~~~~~Kv~Ea~~  103 (239)
T 3ngj_A           48 LCSEAAEYKFASVCVNPT----W------------VPL---CAELLKGTGVKV----CTVIGFPL-GATPSEVKAYETKV  103 (239)
T ss_dssp             HHHHHHHHTCSEEEECGG----G------------HHH---HHHHHTTSSCEE----EEEESTTT-CCSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEECHH----H------------HHH---HHHHhCCCCCeE----EEEeccCC-CCCchHHHHHHHHH
Confidence            456777888887776421    1            122   222333344443    44467775 45556666667788


Q ss_pred             HHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEE----EeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAV----HLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~v----H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.|||.|-+.=-+|.   ..-+.+.+-|+.+++..++..+=+    -.=++- .=...+..|.++|||+|.+|-+ .+
T Consensus       104 Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~e-ei~~a~~ia~~aGADfVKTSTG-f~  181 (239)
T 3ngj_A          104 AVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNE-EKVEVCKRCVAAGAEYVKTSTG-FG  181 (239)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHH-HHHHHHHHHHHHTCSEEECCCS-SS
T ss_pred             HHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHH-HHHHHHHHHHHHCcCEEECCCC-CC
Confidence            88899999988877776   445668888888887765322221    111111 1223344558999999999843 32


Q ss_pred             CCCCCCCCCCcccHHHHHHHHH
Q 012949          385 GCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~  406 (452)
                              +|++..|++-.+.+
T Consensus       182 --------~ggAt~~dv~lmr~  195 (239)
T 3ngj_A          182 --------THGATPEDVKLMKD  195 (239)
T ss_dssp             --------SCCCCHHHHHHHHH
T ss_pred             --------CCCCCHHHHHHHHH
Confidence                    35678888777665

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=93.20  E-value=4.7  Score=37.62  Aligned_cols=166  Identities=15%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV--LSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~--~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      +.++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+  .|+.+  .+....+.+..--.+++.+.++
T Consensus        93 ~~i~~A~~lG~~~v~~~~g~~-------~~~~~~~~~~~~~~~l~~l~~~~~gv~l--~lEn~~~~~~~~~~~~~~~~~l  163 (287)
T 2x7v_A           93 KEVEICRKLGIRYLNIHPGSH-------LGTGEEEGIDRIVRGLNEVLNNTEGVVI--LLENVSQKGGNIGYKLEQLKKI  163 (287)
T ss_dssp             HHHHHHHHHTCCEEEECCEEC-------TTSCHHHHHHHHHHHHHHHHTTCCSCEE--EEECCCCCTTEECSSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCC-------CCCCHHHHHHHHHHHHHHHHcccCCCEE--EEeCCCCCCCccCCCHHHHHHH
Confidence            477888899999998754321       123566777776666654433  45443  3443211100001356777666


Q ss_pred             HHHHHHCCc-C--EEEEcCCc-----CC--CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          309 AKELHDMGC-F--EISLGDTI-----GV--GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       309 a~~l~~~Ga-d--~I~L~DT~-----G~--~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ++.+   +- +  .+++ ||.     |.  ..|..+.++++.+.+.++ +-...+|+||..+--          |-. -|
T Consensus       164 ~~~~---~~~~~vg~~~-D~~h~~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~vH~~D~~~~~----------~~~-~~  228 (287)
T 2x7v_A          164 RDLV---DQRDRVAITY-DTCHGFDSGYDITKKEGVEALLNEIESLFGLERLKMIHLNDSKYPL----------GAA-KD  228 (287)
T ss_dssp             HHHC---SCGGGEEEEE-EHHHHHHTTCCTTSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CC
T ss_pred             HHhc---CCCCCeEEEE-EhhhHHHcCCCCCchHHHHHHHHHHHHhcCccceeEEEEecCCCcc----------CCc-cc
Confidence            6554   32 2  2333 652     21  234567778877766654 434688999876521          100 01


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHcC---CC----CCCCChhhHHHHHHHHHHH
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSGL---GV----ETNVDLRKLMLAGDFINKH  429 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~~---Gi----~t~iDl~~L~~la~~v~~~  429 (452)
                      - -..+|        .|..+.+.++..|+..   |+    +..-|.+.+.+-.+++.+.
T Consensus       229 ~-~~~~G--------~G~id~~~~~~~L~~~gy~g~~~~lE~~~~~~~~~~s~~~l~~~  278 (287)
T 2x7v_A          229 R-HERIG--------SGFIGEEGFAVFFSFKEIQEVPWILETPGGNEEHAEDIKKVFEI  278 (287)
T ss_dssp             C-EECTT--------SSSSHHHHHHHHHTCHHHHTSCEEECCSSCHHHHHHHHHHHHHH
T ss_pred             c-cCCCC--------CCCcCHHHHHHHHhccCCCCCcEEEecCCCCcchHHHHHHHHHH
Confidence            0 01122        4789999999999863   31    2222334555544554443

>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2

Probab=93.19  E-value=0.69  Score=46.79  Aligned_cols=134  Identities=17%  Similarity=0.144  Sum_probs=89.6

Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----------CCCCH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAIPP  302 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----------~r~d~  302 (452)
                      +..+.+.|..-|.+=.|.          .+.+|.++.-++++++|+..|+.|.+.|-..-|.+|.          -.++|
T Consensus       128 ~~~~~~~GFtSVMiDgS~----------lp~eENI~~Tk~vv~~ah~~gvsVEaELG~igG~Edgv~~~~~~~~~~yT~P  197 (357)
T 3qm3_A          128 KKTHGQALFSSHMLDLSE----------ESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQP  197 (357)
T ss_dssp             HHHHSSCSCSEEECCCTT----------SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCC-----CCSSTTCTTTSCCH
T ss_pred             HhhhcCCCCCEEEEeCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccccCCH
Confidence            444556688888764332          2568999999999999999999999888765444432          24799


Q ss_pred             HHHHHHHHHHHHC-CcCEEEEc--CCcCC-------CcHHHHHHHHHHHHHhC--C---CccEEEEeCCCcCcHHHHHHH
Q 012949          303 SKVAYVAKELHDM-GCFEISLG--DTIGV-------GTPGTVVPMLEAVMAVV--P---VEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       303 e~l~~~a~~l~~~-Gad~I~L~--DT~G~-------~~P~~v~~li~~l~~~~--p---~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      +...+++++.-.. |+|.+.++  -.=|.       +.|+...++-+.+++.+  |   .+||.+|.=  -|........
T Consensus       198 eea~~Fv~~tg~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~~~~~~~~vpLVlHGg--SG~p~e~i~~  275 (357)
T 3qm3_A          198 EDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGG--SGSELKDIKN  275 (357)
T ss_dssp             HHHHHHHHHHTTTCSCEEEECCSSCCCSSCCSSCCCCCTHHHHHHHHHHHHHTTCSCSCCSCEEECSC--TTCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccEEEEecCCccCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEEeCC--CCCCHHHHHH
Confidence            9999988876322 45554442  22122       24566666666666654  2   256777665  4888999999


Q ss_pred             HHHcCCCEEee
Q 012949          368 SLQMGISTVDC  378 (452)
Q Consensus       368 Al~aGa~~VD~  378 (452)
                      |+..|+.-|+.
T Consensus       276 ai~~GV~KiNi  286 (357)
T 3qm3_A          276 AVSYGVIKMNI  286 (357)
T ss_dssp             HHHTTEEEEEE
T ss_pred             HHHCCceEEEe
Confidence            99999876543

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=93.18  E-value=1.7  Score=43.44  Aligned_cols=137  Identities=13%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             hHHHHHHcCCCEEEEEec--CChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFAS--ASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s--~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ..+.+.++|+|.|.|-.+  .+. ..+..+|.+...-.+.+.++++..++ .+++|.+-+..  |..+  ..+.+...++
T Consensus        75 aA~~a~~~G~D~IeIn~gcP~~~-~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~--g~~~--~~~~~~~~~~  149 (350)
T 3b0p_A           75 AARIGEAFGYDEINLNLGCPSEK-AQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL--GLEG--KETYRGLAQS  149 (350)
T ss_dssp             HHHHHHHTTCSEEEEEECCCSHH-HHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES--CBTT--CCCHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECCcCCCCc-CcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec--CcCc--cccHHHHHHH
Confidence            556777889999888753  222 22333444444445556666666665 47777643332  2111  2345678889


Q ss_pred             HHHHHHCCcCEEEEcCCc---CCCcHH-------HHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEe
Q 012949          309 AKELHDMGCFEISLGDTI---GVGTPG-------TVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVD  377 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~---G~~~P~-------~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD  377 (452)
                      ++.+.++|++.|.+-+-.   |+ ++.       .-.++++.+++.+|.++|..=+    |.. ...+..+++ |||.|-
T Consensus       150 a~~l~~aG~d~I~V~~r~~~~g~-~g~~~~~~~~~~~~~i~~ik~~~~~iPVianG----gI~s~eda~~~l~-GaD~V~  223 (350)
T 3b0p_A          150 VEAMAEAGVKVFVVHARSALLAL-STKANREIPPLRHDWVHRLKGDFPQLTFVTNG----GIRSLEEALFHLK-RVDGVM  223 (350)
T ss_dssp             HHHHHHTTCCEEEEECSCBC-----------CCCCCHHHHHHHHHHCTTSEEEEES----SCCSHHHHHHHHT-TSSEEE
T ss_pred             HHHHHHcCCCEEEEecCchhccc-CcccccCCCcccHHHHHHHHHhCCCCeEEEEC----CcCCHHHHHHHHh-CCCEEE
Confidence            999999999999986533   22 221       1357788899888666665543    322 344445555 988775


Q ss_pred             ec
Q 012949          378 CS  379 (452)
Q Consensus       378 ~S  379 (452)
                      ..
T Consensus       224 iG  225 (350)
T 3b0p_A          224 LG  225 (350)
T ss_dssp             EC
T ss_pred             EC
Confidence            44

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=93.17  E-value=7.1  Score=38.42  Aligned_cols=193  Identities=15%  Similarity=0.155  Sum_probs=108.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~~  216 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+. .+|-.+.++   +..+-++++++    .+.+           
T Consensus        39 ~iD~~~l~~li~~li~~Gv~Gl~v~GtTG--E~~~Ls-~~Er~~v~~~~v~~~~grvpViaGvg~~st~-----------  104 (315)
T 3si9_A           39 AIDEKAFCNFVEWQITQGINGVSPVGTTG--ESPTLT-HEEHKRIIELCVEQVAKRVPVVAGAGSNSTS-----------  104 (315)
T ss_dssp             CBCHHHHHHHHHHHHHTTCSEEECSSTTT--TGGGSC-HHHHHHHHHHHHHHHTTSSCBEEECCCSSHH-----------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCcccc--CccccC-HHHHHHHHHHHHHHhCCCCcEEEeCCCCCHH-----------
Confidence            57999999999999999999987643221  123342 233333333   32222333332    1211           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                         +        ..+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-++.+.+   ..++++..|=     .|.
T Consensus       105 ---~--------ai~la~~A~~~Gadavlv~~P~---y----~~~~~~~l~~~f~~va~---a~~lPiilYn-----~P~  158 (315)
T 3si9_A          105 ---E--------AVELAKHAEKAGADAVLVVTPY---Y----NRPNQRGLYTHFSSIAK---AISIPIIIYN-----IPS  158 (315)
T ss_dssp             ---H--------HHHHHHHHHHTTCSEEEEECCC---S----SCCCHHHHHHHHHHHHH---HCSSCEEEEE-----CHH
T ss_pred             ---H--------HHHHHHHHHhcCCCEEEECCCC---C----CCCCHHHHHHHHHHHHH---cCCCCEEEEe-----Cch
Confidence               1        1234567888999999887652   1    22355555555544433   3478876432     232


Q ss_pred             --CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCC
Q 012949          297 --EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       297 --~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa  373 (452)
                        ....+++.+.+++++   . ...+.++||.|-  ..++.++++..    +. .+.+ -+.++      ..+.++.+|+
T Consensus       159 ~tg~~l~~~~~~~La~~---~-pnIvgiKdssgd--~~~~~~l~~~~----~~-~f~v~~G~d~------~~l~~l~~G~  221 (315)
T 3si9_A          159 RSVIDMAVETMRDLCRD---F-KNIIGVKDATGK--IERASEQREKC----GK-DFVQLSGDDC------TALGFNAHGG  221 (315)
T ss_dssp             HHSCCCCHHHHHHHHHH---C-TTEEEEEECSCC--THHHHHHHHHH----CS-SSEEEESCGG------GHHHHHHTTC
T ss_pred             hhCCCCCHHHHHHHHhh---C-CCEEEEEeCCCC--HHHHHHHHHHc----CC-CeEEEecCHH------HHHHHHHcCC
Confidence              224567776666532   3 478999999875  45565555443    32 2333 44433      2467788998


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +   +.|.+          ++|+.-+.++...+
T Consensus       222 ~---G~is~----------~an~~P~~~~~l~~  241 (315)
T 3si9_A          222 V---GCISV----------SSNVAPKLCAQLHA  241 (315)
T ss_dssp             C---EEEES----------GGGTCHHHHHHHHH
T ss_pred             C---EEEec----------HHHhhHHHHHHHHH
Confidence            6   34443          34555555555544

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=93.16  E-value=3  Score=40.61  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=88.3

Q ss_pred             HHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..-++.++++||+.|-+|...      .|.-.|  -..++++...+.+.. +..+.++-.+.     +.+|...+.+.+ 
T Consensus        27 a~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~--vTldemi~h~~aV~r~~~~~~vvaD~p-----fgsy~~s~~~a~-   98 (275)
T 1o66_A           27 SSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLP--VSLRDMCYHTECVARGAKNAMIVSDLP-----FGAYQQSKEQAF-   98 (275)
T ss_dssp             HHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTT--CCHHHHHHHHHHHHHHCSSSEEEEECC-----TTSSSSCHHHHH-
T ss_pred             HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCC--CCHHHHHHHHHHHHhhCCCCeEEEECC-----CCCccCCHHHHH-
Confidence            345788899999999998431      122111  245677776665432 22222222222     112222222221 


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CPV  296 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p~  296 (452)
                             +...+..++|++-|.+-...              +    +.+.|+.+.+.|++|.+.|-.+      +| .-.
T Consensus        99 -------~na~rl~kaGa~aVklEdg~--------------e----~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~v  153 (275)
T 1o66_A           99 -------AAAAELMAAGAHMVKLEGGV--------------W----MAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKV  153 (275)
T ss_dssp             -------HHHHHHHHTTCSEEEEECSG--------------G----GHHHHHHHHHTTCCEEEEEESCGGGTTC------
T ss_pred             -------HHHHHHHHcCCcEEEECCcH--------------H----HHHHHHHHHHcCCCeEeeeccCceeecccCCeEE
Confidence                   23446667999999998751              1    2355577778999987666532      00 001


Q ss_pred             CCCC-CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          297 EGAI-PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       297 ~~r~-d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      -+|+ ..+.+.+-++++.++||+.|.+.=     .|.   ++++.+.+.++.
T Consensus       154 ~grt~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~---~~a~~it~~l~i  197 (275)
T 1o66_A          154 QGRGGKAQALLNDAKAHDDAGAAVVLMEC-----VLA---ELAKKVTETVSC  197 (275)
T ss_dssp             -----CHHHHHHHHHHHHHTTCSEEEEES-----CCH---HHHHHHHHHCSS
T ss_pred             EeChHHHHHHHHHHHHHHHcCCcEEEEec-----CCH---HHHHHHHHhCCC
Confidence            1222 246777788899999999999953     353   456666777654

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=93.08  E-value=0.74  Score=45.94  Aligned_cols=147  Identities=15%  Similarity=0.161  Sum_probs=88.1

Q ss_pred             HHHHHHHHHH-HCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          149 VKVELIRRLV-SSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       149 ~k~~i~~~L~-~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ...++++.+. +.|.+.|++|.- ..|...+  ...++..+.++.+   .++.+++-  +..+-         +      
T Consensus        81 ~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~--vs~ee~~~~V~~v~~~~~vPlsID--g~~~~---------T------  141 (323)
T 4djd_D           81 EPGRWAQKCVAEYGADLIYLKLDGADPEGAN--HSVDQCVATVKEVLQAVGVPLVVV--GCGDV---------E------  141 (323)
T ss_dssp             CHHHHHHHHHHTTCCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHHCCSCEEEE--CCSCH---------H------
T ss_pred             hHHHHHHHHHHHcCCCEEEEcCccCCCCCCC--CCHHHHHHHHHHHHhhCCceEEEE--CCCCC---------C------
Confidence            4678888888 999999999854 3343111  2345555555543   33333332  00000         0      


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          ...+-+++|+++|.+...+..+++.               +++.+++..|++.|..|.  ++.    +    .+.+
T Consensus       142 ----~~~eV~eaAleagag~~~lINsv~~---------------~~~~~m~~laa~~g~~vV--lmh----~----~d~~  192 (323)
T 4djd_D          142 ----KDHEVLEAVAEAAAGENLLLGNAEQ---------------ENYKSLTAACMVHKHNII--ARS----P----LDIN  192 (323)
T ss_dssp             ----HHHHHHHHHHHHTTTSCCEEEEEBT---------------TBCHHHHHHHHHHTCEEE--EEC----S----SCHH
T ss_pred             ----CCHHHHHHHHHhcCCCCCeEEECCc---------------ccHHHHHHHHHHhCCeEE--EEc----c----chHH
Confidence                0123678888888763323333332               112355677788898775  332    2    2468


Q ss_pred             HHHHHHHHHHHCCc--CEEEEcCCcC-C-CcHHHHHHHHHHHHH
Q 012949          304 KVAYVAKELHDMGC--FEISLGDTIG-V-GTPGTVVPMLEAVMA  343 (452)
Q Consensus       304 ~l~~~a~~l~~~Ga--d~I~L~DT~G-~-~~P~~v~~li~~l~~  343 (452)
                      ++.++.+.+.++|+  +.|.|==.+| . -+.++..++++.++.
T Consensus       193 ~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~  236 (323)
T 4djd_D          193 ICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRL  236 (323)
T ss_dssp             HHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHH
Confidence            88889999999998  6787732333 1 267888889998886

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=93.06  E-value=1.2  Score=42.83  Aligned_cols=193  Identities=16%  Similarity=0.161  Sum_probs=108.9

Q ss_pred             HHHHHHHHCCCCEEEEecC-CC-CCccccc--CCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSF-VS-PKWVPQL--ADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~-~s-~~~~p~~--~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      --++.++++||+.|=+|.. .+ ....|..  -..++++..++.+. .+.+++++.. .      .+|+..+   .    
T Consensus        31 ~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~-~------~Gyg~~~---~----   96 (255)
T 2qiw_A           31 WSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDV-E------SGYGLSP---A----   96 (255)
T ss_dssp             HHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEEC-T------TCTTCCH---H----
T ss_pred             HHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEecc-C------CCcCcHH---H----
Confidence            3467788999999999952 11 1112221  24577777777653 2334444321 1      2344322   1    


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc--EEEEEEeeecCCCCCCC----
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP--VRGYVSCVVGCPVEGAI----  300 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~--V~~~l~~~~g~p~~~r~----  300 (452)
                          +.+.+..++|+.-|.|-...   |...+.=.+.++..++++.+++.+++.|++  |.+-.-..+    .++.    
T Consensus        97 ----~~~~~l~~aGa~gv~iEd~~---~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~----~g~~~~~~  165 (255)
T 2qiw_A           97 ----DLIAQILEAGAVGINVEDVV---HSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVK----LGADVFED  165 (255)
T ss_dssp             ----HHHHHHHHTTCCEEEECSEE---GGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHH----HCTTTSSS
T ss_pred             ----HHHHHHHHcCCcEEEECCCC---CCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhh----ccCCcchH
Confidence                36677778999999998765   222222246788899988888887777887  432221100    0111    


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC-cHHHHHHHHHHcCCCEEee
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-QSLPNILISLQMGISTVDC  378 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G-lA~ANaLaAl~aGa~~VD~  378 (452)
                      ..+.+.+=++.+.++|||.|.+.   |+-+++.+.++    .+.++. |+-+-.... + .-.-..-.--++|+++|-.
T Consensus       166 ~~~~ai~ra~a~~eAGAd~i~~e---~~~~~~~~~~i----~~~~~~-P~n~~~~~~-~~~p~~~~~eL~~lGv~~v~~  235 (255)
T 2qiw_A          166 PMVEAIKRIKLMEQAGARSVYPV---GLSTAEQVERL----VDAVSV-PVNITAHPV-DGHGAGDLATLAGLGVRRVTF  235 (255)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEC---CCCSHHHHHHH----HTTCSS-CBEEECBTT-TBBTTBCHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEc---CCCCHHHHHHH----HHhCCC-CEEEEecCC-CCCCCCCHHHHHHcCCCEEEE
Confidence            14677777888899999999994   33334544444    444542 444433221 2 0011122444678887754

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=93.06  E-value=1.1  Score=45.29  Aligned_cols=143  Identities=17%  Similarity=0.076  Sum_probs=87.2

Q ss_pred             hHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCCC--C
Q 012949          232 GFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV--E  297 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p~--~  297 (452)
                      ..++|+++|.|.|.|-.+-        |+..+  ....|-|.++-.+.+.++++.+|+. |- .|.+-|+..-....  .
T Consensus       166 aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~  245 (364)
T 1vyr_A          166 AVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDN  245 (364)
T ss_dssp             HHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCC
T ss_pred             HHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccC
Confidence            4456688999999986532        22211  2235667887778888888888874 42 45544443100000  1


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  376 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~V  376 (452)
                      +..+.+...++++.+.++|++.|.+....-...|..-.++++.+++.++. +|..=.  ..  -...+..+++.| ||.|
T Consensus       246 ~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~i-Pvi~~G--gi--t~~~a~~~l~~g~aD~V  320 (364)
T 1vyr_A          246 GPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHG-VIIGAG--AY--TAEKAEDLIGKGLIDAV  320 (364)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCSEE
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCC-CEEEEC--Cc--CHHHHHHHHHCCCccEE
Confidence            23466778899999999999999986521000011113567888888764 443322  12  367888999998 8876


Q ss_pred             eec
Q 012949          377 DCS  379 (452)
Q Consensus       377 D~S  379 (452)
                      -..
T Consensus       321 ~~g  323 (364)
T 1vyr_A          321 AFG  323 (364)
T ss_dssp             EES
T ss_pred             EEC
Confidence            543

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=93.05  E-value=1.1  Score=41.68  Aligned_cols=226  Identities=13%  Similarity=0.101  Sum_probs=116.6

Q ss_pred             ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCC------CcccccCCH---HHHHHHHHhccCCc
Q 012949          126 FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSP------KWVPQLADA---RDVMEAVRDLEGAR  196 (452)
Q Consensus       126 ~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~------~~~p~~~D~---e~v~~~i~~~~~~~  196 (452)
                      ++-+.--|+|+        ++   -.+.++.+.++|++.||+......      ...+...+.   +++.+.+++ .+++
T Consensus        11 klg~~~~~~~~--------~~---~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~   78 (262)
T 3p6l_A           11 RLGMQSYSFHL--------FP---LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAAS-KGIK   78 (262)
T ss_dssp             EEEEEGGGGTT--------SC---HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHH-TTCE
T ss_pred             EEEEEecccCC--------CC---HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHH-cCCe
Confidence            45555566654        23   355677788999999999753210      000111222   333333332 4666


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +.++.+....           ..+.       ..+.++.|.+.|++.|.+....                 +.+.++.++
T Consensus        79 i~~~~~~~~~-----------~~~~-------~~~~i~~A~~lGa~~v~~~~~~-----------------~~~~~l~~~  123 (262)
T 3p6l_A           79 IVGTGVYVAE-----------KSSD-------WEKMFKFAKAMDLEFITCEPAL-----------------SDWDLVEKL  123 (262)
T ss_dssp             EEEEEEECCS-----------STTH-------HHHHHHHHHHTTCSEEEECCCG-----------------GGHHHHHHH
T ss_pred             EEEEeccCCc-----------cHHH-------HHHHHHHHHHcCCCEEEecCCH-----------------HHHHHHHHH
Confidence            6665543210           0011       1247888999999999986421                 123466788


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCC-CCHHHHHHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r-~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      |++.|+.+.  +...   +.... .+++.+.++++.    +.+  .+++ ||.=...-.  .+....+++ +++--..+|
T Consensus       124 a~~~gv~l~--~En~---~~~~~~~~~~~~~~ll~~----~~~~~g~~~-D~~h~~~~g--~d~~~~l~~-~~~~i~~vH  190 (262)
T 3p6l_A          124 SKQYNIKIS--VHNH---PQPSDYWKPENLLKAISG----RSQSLGSCS-DVGHWRREG--LNQIDCLKQ-LKGRIISLH  190 (262)
T ss_dssp             HHHHTCEEE--EECC---SSSSSSSSHHHHHHHHTT----SCTTEEEEE-EHHHHHHTT--CCHHHHHHH-TTTCEEEEE
T ss_pred             HHHhCCEEE--EEeC---CCccccCCHHHHHHHHHh----CCCceEEEe-chHHHHhcC--CCHHHHHHH-HhhhheEEe
Confidence            999998754  4332   11111 256666666652    222  3333 653221110  112333333 333346889


Q ss_pred             eCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC----CC------ChhhHHHHH
Q 012949          354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET----NV------DLRKLMLAG  423 (452)
Q Consensus       354 ~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t----~i------Dl~~L~~la  423 (452)
                      ++|..--.         .|....+  -..+        +.|..+...++..|+..|++-    .+      ..+.+....
T Consensus       191 ~~D~~~~~---------~~~~~~~--~~~~--------G~G~id~~~~~~~l~~~gy~g~~~~E~~~~~~~~~~~~~~s~  251 (262)
T 3p6l_A          191 FKDIAPKK---------AGENEQH--DVIW--------GTGILDVKGMLKELKSQNFKGVFSIEYEYNWENSVPDIKECI  251 (262)
T ss_dssp             ECEECCCC---------TTCSCCC--EECT--------TSSSSCHHHHHHHHHHTTCCEEEEECCCSSTTSCHHHHHHHH
T ss_pred             eccCCccc---------cCcCccc--cCCC--------CCCccCHHHHHHHHHHCCCCeEEEEEeccCcCChHHHHHHHH
Confidence            99975110         0111100  1122        258899999999999866541    12      234555555


Q ss_pred             HHHHHHh
Q 012949          424 DFINKHL  430 (452)
Q Consensus       424 ~~v~~~~  430 (452)
                      +++.+.+
T Consensus       252 ~~l~~~l  258 (262)
T 3p6l_A          252 QYFNKTA  258 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5655543

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=93.02  E-value=0.34  Score=49.06  Aligned_cols=72  Identities=11%  Similarity=0.110  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +...+.++.+.++|+|.|.+ |+.- ..+..+.+.|+.+++.+|+++|.. -.     .....+..++++|||.|.+++.
T Consensus        99 ~~~~e~~~~a~~aGvdvI~i-d~a~-G~~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~g  171 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCV-DVAH-AHAKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGIG  171 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEE-ECSC-CSSHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECCS
T ss_pred             HHHHHHHHHHHHcCCCEEEE-eCCC-CCcHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcCC
Confidence            56677899999999998877 5432 246677889999999887766655 12     3456788999999999998644

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=93.01  E-value=2.1  Score=41.68  Aligned_cols=170  Identities=11%  Similarity=0.136  Sum_probs=92.7

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHH----hccCCceeEEe
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVR----DLEGARLPVLT  201 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~----~~~~~~l~~l~  201 (452)
                      .-|+.+|+ |-..--+..++.+..++-++.|.+.|.+.|++|--+ .|...| + +.++.++++.    .+....+..-+
T Consensus        10 MGIlNvTP-DSFsDGG~~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~-v-s~eeE~~Rv~pvi~~l~~~~v~iSI   86 (270)
T 4hb7_A           10 MGILNVTP-DSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEM-V-TLEEELNRVLPVVEAIVGFDVKISV   86 (270)
T ss_dssp             EEEEECC-----------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-C-CHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred             EEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCC-C-chHHHHHHHHHHHHHhhcCCCeEEE
Confidence            44666665 333322335788889999999999999999999643 333211 2 3444444442    23222222112


Q ss_pred             cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          202 PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       202 ~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      ...+                        .+-.++|+++|++.|.=.. ...|                  .++.+.+.+.
T Consensus        87 DT~~------------------------~~Va~~al~aGa~iINDVs~g~~d------------------~~m~~~va~~  124 (270)
T 4hb7_A           87 DTFR------------------------SEVAEACLKLGVDMINDQWAGLYD------------------HRMFQIVAKY  124 (270)
T ss_dssp             ECSC------------------------HHHHHHHHHHTCCEEEETTTTSSC------------------THHHHHHHHT
T ss_pred             ECCC------------------------HHHHHHHHHhccceeccccccccc------------------hhHHHHHHHc
Confidence            2111                        2356789999999887321 1112                  1334566777


Q ss_pred             CCcEEEEEEeeecCCCCCCCC---HHHHHHHHHHHHHCCcC--EEEEcCCcCCC-cHHHHHHHHHHHHH
Q 012949          281 SIPVRGYVSCVVGCPVEGAIP---PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMA  343 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d---~e~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~li~~l~~  343 (452)
                      +..+.  +|+.-+.|.....-   .+++.+-++.+.++|++  .|.|==-.|.+ ++++-.++++.+..
T Consensus       125 ~~~~v--lMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~  191 (270)
T 4hb7_A          125 DAEII--LMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDE  191 (270)
T ss_dssp             TCEEE--EECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHH
T ss_pred             CCCeE--EeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHHHHHhhHHH
Confidence            87764  77654443221110   13455556778889984  67773345544 56777778777654

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=92.87  E-value=2  Score=41.51  Aligned_cols=183  Identities=15%  Similarity=0.117  Sum_probs=104.3

Q ss_pred             HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949          154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG  232 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~  232 (452)
                      +....+.|-++||+=..-.. ..-|.    ..+++.+++..++.+-+|++.+..    -+.|....-++|       .+|
T Consensus        14 a~~A~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~~~ipv~vMIRPR~G----dF~Ys~~E~~~M-------~~D   78 (256)
T 1twd_A           14 ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIPVHPIIRPRGG----DFCYSDGEFAAI-------LED   78 (256)
T ss_dssp             HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSCEEEBCCSSSS----CSCCCHHHHHHH-------HHH
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHHcCCceEEEECCCCC----CCcCCHHHHHHH-------HHH
Confidence            45667899999999642110 11132    234555555456677777755431    133444333333       469


Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  312 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l  312 (452)
                      ++.+.++|++.|.+-+-..|-.+.          .+.++++++.|+  |+++.  +=.+|   |.. .|+   .+..+.+
T Consensus        79 i~~~~~~GadGvV~G~Lt~dg~iD----------~~~~~~Li~~a~--~~~vT--FHRAf---D~~-~d~---~~ale~L  137 (256)
T 1twd_A           79 VRTVRELGFPGLVTGVLDVDGNVD----------MPRMEKIMAAAG--PLAVT--FHRAF---DMC-ANP---LYTLNNL  137 (256)
T ss_dssp             HHHHHHTTCSEEEECCBCTTSSBC----------HHHHHHHHHHHT--TSEEE--ECGGG---GGC-SCH---HHHHHHH
T ss_pred             HHHHHHcCCCEEEEeeECCCCCcC----------HHHHHHHHHHhC--CCcEE--EECch---hcc-CCH---HHHHHHH
Confidence            999999999998887644442111          355566777765  55554  33334   221 233   3457778


Q ss_pred             HHCCcCEEEEcCCcCCC-cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          313 HDMGCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       313 ~~~Gad~I~L~DT~G~~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .++|+++|-   |.|.. +..+-.++++.+.+...  .|.+=.=  -|.-..|.-.-++.|++.++.|
T Consensus       138 ~~lG~~rIL---TSG~~~~a~~g~~~L~~Lv~~a~--~i~Im~G--gGv~~~Ni~~l~~tGv~e~H~S  198 (256)
T 1twd_A          138 AELGIARVL---TSGQKSDALQGLSKIMELIAHRD--APIIMAG--AGVRAENLHHFLDAGVLEVHSS  198 (256)
T ss_dssp             HHHTCCEEE---ECTTSSSTTTTHHHHHHHHTSSS--CCEEEEE--SSCCTTTHHHHHHHTCSEEEEC
T ss_pred             HHcCCCEEE---CCCCCCCHHHHHHHHHHHHHhhC--CcEEEec--CCcCHHHHHHHHHcCCCeEeEC
Confidence            888999987   66654 33444556666665443  2322111  1333344444348999999977

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=92.81  E-value=1  Score=43.66  Aligned_cols=142  Identities=22%  Similarity=0.165  Sum_probs=92.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -.+.|.+.|+.-|-+.-    .+            +.   .+.+..+..++.|    +.+.|+|.. ..+.+.-+.-++.
T Consensus        64 lc~eA~~~~~aaVCV~p----~~------------V~---~a~~~L~gs~v~v----~tVigFP~G-~~~~~~Kv~Ea~~  119 (260)
T 3r12_A           64 LCLEARENRFHGVCVNP----CY------------VK---LAREELEGTDVKV----VTVVGFPLG-ANETRTKAHEAIF  119 (260)
T ss_dssp             HHHHHHHTTCSEEEECG----GG------------HH---HHHHHHTTSCCEE----EEEESTTTC-CSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcEEEECH----HH------------HH---HHHHHhcCCCCeE----EEEecCCCC-CCcHHHHHHHHHH
Confidence            45677788888776642    11            12   1223333345443    445677854 4556666667778


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCcc----EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVEK----LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~~----l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.|||.|-+.=-+|.+   .-..+.+-|+.+++..++.+    |+....++--. ...+..|.++|||+|=+| .|.+
T Consensus       120 Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei-~~A~~ia~eaGADfVKTS-TGf~  197 (260)
T 3r12_A          120 AVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEK-IAACVISKLAGAHFVKTS-TGFG  197 (260)
T ss_dssp             HHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHH-HHHHHHHHHTTCSEEECC-CSSS
T ss_pred             HHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHH-HHHHHHHHHhCcCEEEcC-CCCC
Confidence            888999999988777774   55778888888888765422    33334444333 344677889999999999 5654


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHc
Q 012949          385 GCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~~  407 (452)
                              +|++.+|++-.+.+.
T Consensus       198 --------~~GAT~edV~lm~~~  212 (260)
T 3r12_A          198 --------TGGATAEDVHLMKWI  212 (260)
T ss_dssp             --------SCCCCHHHHHHHHHH
T ss_pred             --------CCCCCHHHHHHHHHH
Confidence                    357888888777764

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=92.79  E-value=4.4  Score=40.45  Aligned_cols=135  Identities=10%  Similarity=0.030  Sum_probs=83.6

Q ss_pred             hHHHHHHcCCCEEEEEe--cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC-------H
Q 012949          232 GFEAAIAAGAKEVAIFA--SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-------P  302 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~--s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d-------~  302 (452)
                      .++.|++.|+|-|-+.+  ...+-. +     ..++.++.+.++.+.|++.|+++...+.. ++.......+       |
T Consensus       115 sve~a~~~GADAVk~lv~~g~d~~~-e-----~~~~q~~~l~rv~~ec~~~GiPlllEil~-y~~~~~~~~~~~~a~~~p  187 (332)
T 3iv3_A          115 SIKRLKEAGADAVKFLLYYDVDGDP-Q-----VNVQKQAYIERIGSECQAEDIPFFLEILT-YDETISNNSSVEFAKVKV  187 (332)
T ss_dssp             CHHHHHHTTCSEEEEEEEECTTSCH-H-----HHHHHHHHHHHHHHHHHHHTCCEEEEEEE-CBTTBSCTTSHHHHTTHH
T ss_pred             CHHHHHHcCCCEEEEEEEcCCCchH-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEec-cCCCCCCCcchhhhccCH
Confidence            68899999999766554  322210 0     01356888999999999999998754442 2211122344       4


Q ss_pred             HHHHHHHHHH--HHCCcCEEEEcCCc------CC------CcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHH
Q 012949          303 SKVAYVAKEL--HDMGCFEISLGDTI------GV------GTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILI  367 (452)
Q Consensus       303 e~l~~~a~~l--~~~Gad~I~L~DT~------G~------~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLa  367 (452)
                      +.+...++.+  .++|+|.+-+.=|.      |.      -+-.+..+.++.+.+..| +|+-+ =.=-+.-.-+...-.
T Consensus       188 ~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~-~P~v~lsgG~~~~~fl~~v~~  266 (332)
T 3iv3_A          188 HKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTD-LPYIYLSAGVSAELFQETLVF  266 (332)
T ss_dssp             HHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCS-SCEEEECTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCC-CCEEEECCCCCHHHHHHHHHH
Confidence            4489999999  67899999887332      21      133455555666655544 35432 222233455566678


Q ss_pred             HHHcCCC
Q 012949          368 SLQMGIS  374 (452)
Q Consensus       368 Al~aGa~  374 (452)
                      |+++|+.
T Consensus       267 A~~aGa~  273 (332)
T 3iv3_A          267 AHKAGAK  273 (332)
T ss_dssp             HHHHTCC
T ss_pred             HHHcCCC
Confidence            9999983

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=92.77  E-value=4.6  Score=39.52  Aligned_cols=196  Identities=16%  Similarity=0.154  Sum_probs=109.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|-+.--...  .+.+.+  ..++++.+.+..+-++++++    .+.+            
T Consensus        31 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE--~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~------------   96 (307)
T 3s5o_A           31 EVDYGKLEENLHKLGTFPFRGFVVQGSNGE--FPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQ------------   96 (307)
T ss_dssp             CBCHHHHHHHHHHHTTSCCSEEEESSGGGT--GGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHH------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccccc--hhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHH------------
Confidence            578999999999999999998876422111  133322  22334433333333444433    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +        ..+-.+.|.++|+|-+.+..+-   +.+  .+.|.++.++-++.+.+   ..++++..|=     .|. 
T Consensus        97 --~--------ai~la~~A~~~Gadavlv~~P~---y~~--~~~s~~~l~~~f~~ia~---a~~lPiilYn-----~P~~  153 (307)
T 3s5o_A           97 --A--------TVEMTVSMAQVGADAAMVVTPC---YYR--GRMSSAALIHHYTKVAD---LSPIPVVLYS-----VPAN  153 (307)
T ss_dssp             --H--------HHHHHHHHHHTTCSEEEEECCC---TTG--GGCCHHHHHHHHHHHHH---HCSSCEEEEE-----CHHH
T ss_pred             --H--------HHHHHHHHHHcCCCEEEEcCCC---cCC--CCCCHHHHHHHHHHHHh---hcCCCEEEEe-----CCcc
Confidence              1        1234567788999999987652   111  12356666665555433   4578876433     232 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCC
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                       ....+++.+.+++    +. ...+.++|+.|-  ..++.++++.    .+...+.+ -.+|+      ..+.++.+|++
T Consensus       154 tg~~l~~~~~~~La----~~-pnIvgiKdssgd--~~~~~~~~~~----~~~~~f~v~~G~d~------~~l~~l~~G~~  216 (307)
T 3s5o_A          154 TGLDLPVDAVVTLS----QH-PNIVGMXDSGGD--VTRIGLIVHK----TRKQDFQVLAGSAG------FLMASYALGAV  216 (307)
T ss_dssp             HSCCCCHHHHHHHH----TS-TTEEEEEECSCC--HHHHHHHHHH----TTTSSCEEEESSGG------GHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHh----cC-CCEEEEEcCCCC--HHHHHHHHHh----ccCCCeEEEeCcHH------HHHHHHHcCCC
Confidence             1235677776665    33 579999999874  4555555442    32113444 44443      35678889985


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                         +.|.|          ++|+.-+.++.+.+
T Consensus       217 ---G~is~----------~an~~P~~~~~l~~  235 (307)
T 3s5o_A          217 ---GGVCA----------LANVLGAQVCQLER  235 (307)
T ss_dssp             ---EEECG----------GGGTCHHHHHHHHH
T ss_pred             ---EEEec----------hhhhhHHHHHHHHH
Confidence               44553          44566566555544

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=92.75  E-value=1.7  Score=40.34  Aligned_cols=169  Identities=8%  Similarity=0.025  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      +..++++.+.+.|++.|++..       |      +.++.+++..+..+..+....         |...+. .+.    .
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~~-------~------~~i~~i~~~~~~p~i~~~~~~---------~~~~~~-~i~----~   89 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRANS-------V------RDIKEIQAITDLPIIGIIKKD---------YPPQEP-FIT----A   89 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEES-------H------HHHHHHHTTCCSCEEEECBCC---------CTTSCC-CBS----C
T ss_pred             hHHHHHHHHHHCCCcEeecCC-------H------HHHHHHHHhCCCCEEeeEcCC---------CCcccc-ccC----C
Confidence            678999999999999999852       1      346667665554432221110         000000 000    0


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      ..+.++.++++|++.|.+-......    .-+.       .+.+.++.+|+.  +..+.+  .         ..+++.  
T Consensus        90 ~~~~i~~~~~~Gad~V~l~~~~~~~----~~~~-------~~~~~i~~i~~~~~~~~v~~--~---------~~t~~e--  145 (234)
T 1yxy_A           90 TMTEVDQLAALNIAVIAMDCTKRDR----HDGL-------DIASFIRQVKEKYPNQLLMA--D---------ISTFDE--  145 (234)
T ss_dssp             SHHHHHHHHTTTCSEEEEECCSSCC----TTCC-------CHHHHHHHHHHHCTTCEEEE--E---------CSSHHH--
T ss_pred             hHHHHHHHHHcCCCEEEEcccccCC----CCCc-------cHHHHHHHHHHhCCCCeEEE--e---------CCCHHH--
Confidence            2347889999999998776543210    0001       123556666665  555431  1         112333  


Q ss_pred             HHHHHHHHCCcCEEE--EcCCc-CC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEe
Q 012949          307 YVAKELHDMGCFEIS--LGDTI-GV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVD  377 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~--L~DT~-G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD  377 (452)
                        ++.+.++|+|.|.  +.... |.  ..+.. .++++.+++.  .+++..    +-|.. ..|+...+++||+.|=
T Consensus       146 --a~~a~~~Gad~i~~~v~g~~~~~~~~~~~~-~~~i~~~~~~--~ipvia----~GGI~s~~~~~~~~~~Gad~v~  213 (234)
T 1yxy_A          146 --GLVAHQAGIDFVGTTLSGYTPYSRQEAGPD-VALIEALCKA--GIAVIA----EGKIHSPEEAKKINDLGVAGIV  213 (234)
T ss_dssp             --HHHHHHTTCSEEECTTTTSSTTSCCSSSCC-HHHHHHHHHT--TCCEEE----ESCCCSHHHHHHHHTTCCSEEE
T ss_pred             --HHHHHHcCCCEEeeeccccCCCCcCCCCCC-HHHHHHHHhC--CCCEEE----ECCCCCHHHHHHHHHCCCCEEE
Confidence              6677889999982  22110 11  11111 2456666654  334444    33666 7788888889988653

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=92.69  E-value=3  Score=39.53  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=61.3

Q ss_pred             HHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCC-------------------cCCCcH
Q 012949          272 AVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDT-------------------IGVGTP  331 (452)
Q Consensus       272 ~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT-------------------~G~~~P  331 (452)
                      +.++.+|+.|-+ +..|+..       +..+.+...+.++.+.+.|+|.|.|...                   .+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~-------g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~   79 (262)
T 1rd5_A            7 DTMAALMAKGKTAFIPYITA-------GDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTM   79 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEET-------TSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHhcCCceEEEEeeC-------CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCH
Confidence            444555665554 4455542       2234588899999999999999988542                   233578


Q ss_pred             HHHHHHHHHHHHhCCCccEEEEeCCC----cCcHHHHHHHHHHcCCCEEeec
Q 012949          332 GTVVPMLEAVMAVVPVEKLAVHLHDT----YGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       332 ~~v~~li~~l~~~~p~~~l~vH~Hnd----~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ....++++.+++.. .+||.+=...+    +++.     .+.++||+.|...
T Consensus        80 ~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~~-----~a~~aGadgv~v~  125 (262)
T 1rd5_A           80 DAVLEMLREVTPEL-SCPVVLLSYYKPIMFRSLA-----KMKEAGVHGLIVP  125 (262)
T ss_dssp             HHHHHHHHHHGGGC-SSCEEEECCSHHHHSCCTH-----HHHHTTCCEEECT
T ss_pred             HHHHHHHHHHHhcC-CCCEEEEecCcHHHHHHHH-----HHHHcCCCEEEEc
Confidence            88999999999874 34543311111    1221     2889999988763

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=92.69  E-value=2.5  Score=45.22  Aligned_cols=169  Identities=12%  Similarity=0.080  Sum_probs=97.1

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCC---CCC---CCCHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCP---VEG---AIPPSK  304 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p---~~~---r~d~e~  304 (452)
                      .+..+...|++.|.+-++..+-               .+..+++..++ ....+.+|=-  -|.|   +..   ..+|+.
T Consensus       191 ~~~~l~~~~~~avG~NC~~gp~---------------~~~~~l~~l~~~~~~p~~vyPN--aG~p~~~~~~~~~~~~p~~  253 (566)
T 1q7z_A          191 FAITFDELDIDALGINCSLGPE---------------EILPIFQELSQYTDKFLVVEPN--AGKPIVENGKTVYPLKPHD  253 (566)
T ss_dssp             HHHHHHTSSCSEEEEESSSCHH---------------HHHHHHHHHHHTCCSEEEEECC--SSSCEEETTEEECCCCHHH
T ss_pred             HHHHhhccCCCEEEEeCCCCHH---------------HHHHHHHHHHhcCCCEEEEEcC--CCCCcccCCccccCCCHHH
Confidence            4455556788888877765442               22333444433 3444432211  2333   111   236899


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC----cc--E----------------EE--Ee------
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV----EK--L----------------AV--HL------  354 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~----~~--l----------------~v--H~------  354 (452)
                      +.+.++.+.+.|+..|.=|  -| -+|+.++.+-+.++..-|.    .+  .                +.  ..      
T Consensus       254 ~a~~~~~~~~~G~~iiGGC--CG-TtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~~~~~~~~~~~iiGer~N~Tg~dsf  330 (566)
T 1q7z_A          254 FAVHIDSYYELGVNIFGGC--CG-TTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPSKLVTFDHFVVIGERINPAGRKKL  330 (566)
T ss_dssp             HHTTHHHHHHTTCSEECCC--TT-CCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSSCEEESSSCEEEEEEECCTTCHHH
T ss_pred             HHHHHHHHHHcCCcEEccc--cC-CCHHHHHHHHHHhcCCCCCCcccCccceecCCceeeccccceEEEEEecCCCChhH
Confidence            9999999999998776433  23 3999999998888653321    01  1                11  11      


Q ss_pred             -----CCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-CCCCCCCChhhHHHHHHHHH
Q 012949          355 -----HDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-LGVETNVDLRKLMLAGDFIN  427 (452)
Q Consensus       355 -----Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-~Gi~t~iDl~~L~~la~~v~  427 (452)
                           |+++.-+++-+..-++.||++||... |...      ...-..++.++-.++. .++...||..+-.-+..-++
T Consensus       331 ~~~~~~~~~~~a~~~A~~~v~~GAdiIDIgp-g~~~------v~~~ee~~rvv~~i~~~~~vpisIDT~~~~v~eaal~  402 (566)
T 1q7z_A          331 WAEMQKGNEEIVIKEAKTQVEKGAEVLDVNF-GIES------QIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALR  402 (566)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHTTCSEEEEEC-SSGG------GSCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHH
T ss_pred             HHHhhcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhhCCceEEEeCCCHHHHHHHHH
Confidence                 23456678888889999999999983 2222      2333445555555554 35544566654444433343

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=92.67  E-value=2.9  Score=39.01  Aligned_cols=208  Identities=14%  Similarity=0.093  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      .+-.++++.+.+.|++.|.+--.....  .......+.++.+++..  .+++++-+.-                      
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~--~~~~~~~~~i~~i~~~~--~ipvi~~ggI----------------------   83 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLDITASV--EKRKTMLELVEKVAEQI--DIPFTVGGGI----------------------   83 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSS--SHHHHHHHHHHHHHTTC--CSCEEEESSC----------------------
T ss_pred             cCHHHHHHHHHHcCCCEEEEECCchhh--cCCcccHHHHHHHHHhC--CCCEEEeCCC----------------------
Confidence            456888999999999998875322110  00001122333343322  3333332110                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeee--c---CCCCCCC-
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVV--G---CPVEGAI-  300 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~--g---~p~~~r~-  300 (452)
                      ...++++.++++|++.|.+-..                .++....+.+..+..|. .+...+..-.  |   ...++-. 
T Consensus        84 ~~~~~~~~~~~~Gad~V~lg~~----------------~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~  147 (253)
T 1thf_D           84 HDFETASELILRGADKVSINTA----------------AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKK  147 (253)
T ss_dssp             CSHHHHHHHHHTTCSEEEESHH----------------HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTE
T ss_pred             CCHHHHHHHHHcCCCEEEEChH----------------HHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCcc
Confidence            0234788999999999876532                11111112223333342 1222222100  0   0001110 


Q ss_pred             -CHHHHHHHHHHHHHCCcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEE
Q 012949          301 -PPSKVAYVAKELHDMGCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTV  376 (452)
Q Consensus       301 -d~e~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~V  376 (452)
                       +.....+.++.+.++|++.|.+-++  .|..... -.++++.+++..+ +|+-.    .-|.. ..+...++++||+.|
T Consensus       148 ~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~-~~~~~~~l~~~~~-ipvia----~GGI~~~~d~~~~~~~Gadgv  221 (253)
T 1thf_D          148 NTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTT-LPIIA----SGGAGKMEHFLEAFLAGADAA  221 (253)
T ss_dssp             EEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCC-CHHHHHHHGGGCC-SCEEE----ESCCCSHHHHHHHHHTTCSEE
T ss_pred             ccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCC-CHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHHHHHcCChHH
Confidence             0112456677778899998888643  2332221 1456666666553 34443    24555 378888889999865


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      =+.=.=++         +....++++..|+..|+..
T Consensus       222 ~vGsal~~---------~~~~~~~~~~~l~~~g~~~  248 (253)
T 1thf_D          222 LAASVFHF---------REIDVRELKEYLKKHGVNV  248 (253)
T ss_dssp             EESHHHHT---------TCSCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHc---------CCCCHHHHHHHHHHcCCcc
Confidence            33211111         1236888888888887743

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=92.60  E-value=5.3  Score=38.89  Aligned_cols=159  Identities=14%  Similarity=0.141  Sum_probs=92.3

Q ss_pred             HHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCc-eeEEecchhhhhhhhhhhhhccchhh
Q 012949          151 VELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GAR-LPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~-l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..-++.++++||+.|-+|...      .|.-.|  -..++++...+.+. .++ ..+++ .+.     +.+| ..+.+++
T Consensus        39 a~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~--vtldem~~h~~aV~r~~~~~~vva-D~p-----fgsY-~s~~~a~  109 (275)
T 3vav_A           39 ASFAALLDRANVDVQLIGDSLGNVLQGQTTTLP--VTLDDIAYHTACVARAQPRALIVA-DLP-----FGTY-GTPADAF  109 (275)
T ss_dssp             HHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTT--CCHHHHHHHHHHHHHTCCSSEEEE-ECC-----TTSC-SSHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCc--cCHHHHHHHHHHHHhcCCCCCEEE-ecC-----CCCC-CCHHHHH
Confidence            345778899999999888432      122111  24577777666553 232 23332 222     1235 3333333


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CP  295 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p  295 (452)
                      +        .+.+..++|++-|.+-.....                  .+.|+.+.+.|++|.+.+-..      +| .-
T Consensus       110 ~--------~a~rl~kaGa~aVklEdg~~~------------------~~~i~~l~~~GIpv~gHlgltPq~~~~~gg~~  163 (275)
T 3vav_A          110 A--------SAVKLMRAGAQMVKFEGGEWL------------------AETVRFLVERAVPVCAHVGLTPQSVHAFGGFK  163 (275)
T ss_dssp             H--------HHHHHHHTTCSEEEEECCGGG------------------HHHHHHHHHTTCCEEEEEESCGGGHHHHC---
T ss_pred             H--------HHHHHHHcCCCEEEECCchhH------------------HHHHHHHHHCCCCEEEecCCCceEEeccCCeE
Confidence            3        455666779999999876321                  345566678899998877532      11 01


Q ss_pred             CCCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          296 VEGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       296 ~~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .-+|++  .+.+.+-++.+.++||+.|.+.=     .|..   +++.+.+.++...|++
T Consensus       164 vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~~---~a~~It~~l~iP~igI  214 (275)
T 3vav_A          164 VQGKTEAGAAQLLRDARAVEEAGAQLIVLEA-----VPTL---VAAEVTRELSIPTIGI  214 (275)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTCSEEEEES-----CCHH---HHHHHHHHCSSCEEEE
T ss_pred             EEcCCHHHHHHHHHHHHHHHHcCCCEEEecC-----CCHH---HHHHHHHhCCCCEEEE
Confidence            123432  35667777888999999999953     4554   4555566664333444

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=92.56  E-value=1.2  Score=43.10  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             HHHHh-C-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHH-CCcCEEEE----------cCCcCCCcHHHHHHHHHHH
Q 012949          275 HAAKV-L-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD-MGCFEISL----------GDTIGVGTPGTVVPMLEAV  341 (452)
Q Consensus       275 ~~Ak~-~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~-~Gad~I~L----------~DT~G~~~P~~v~~li~~l  341 (452)
                      +..++ . +..+.++|..         .+++.+.+.++.+.+ +|+|.|.|          .|..|. .|..+.++++.+
T Consensus        90 ~~~~~~~~~~p~~v~l~~---------~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~-~~~~~~eii~~v  159 (311)
T 1ep3_A           90 PWLNENFPELPIIANVAG---------SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGT-DPEVAAALVKAC  159 (311)
T ss_dssp             HHHHHHCTTSCEEEEECC---------SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGG-CHHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEcC---------CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcC-CHHHHHHHHHHH
Confidence            33444 4 6666655531         257888999999988 99997765          233443 788899999999


Q ss_pred             HHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          342 MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       342 ~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ++.+. .+|.+..--+..-...-+..+.++|++.|+++=
T Consensus       160 ~~~~~-~pv~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~  197 (311)
T 1ep3_A          160 KAVSK-VPLYVKLSPNVTDIVPIAKAVEAAGADGLTMIN  197 (311)
T ss_dssp             HHHCS-SCEEEEECSCSSCSHHHHHHHHHTTCSEEEECC
T ss_pred             HHhcC-CCEEEEECCChHHHHHHHHHHHHcCCCEEEEeC
Confidence            99874 467776653333233446677789999998853

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=92.50  E-value=1.7  Score=42.51  Aligned_cols=109  Identities=19%  Similarity=0.180  Sum_probs=71.8

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHH---HHHHHHHHHHHhCCCcc----EEEEeCCC
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPG---TVVPMLEAVMAVVPVEK----LAVHLHDT  357 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~---~v~~li~~l~~~~p~~~----l~vH~Hnd  357 (452)
                      |+.+.|+|.. ..+.+.-+.-++.+.+.||+.|-+.=-+|.+   .-.   .+.+-|+.+++..+..+    |+.-.=+|
T Consensus        92 v~tVigFP~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d  170 (281)
T 2a4a_A           92 IACVINFPYG-TDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT  170 (281)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS
T ss_pred             EEEEeCCCCC-CCCHHHHHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            3445667754 4566666667778888999999888777744   345   67778888887665432    22222233


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      ...=...+..|+++|||+|=+|- |.        .+|++.+|++..+.+
T Consensus       171 ~e~i~~A~~ia~eaGADfVKTST-Gf--------~~~gAT~edv~lm~~  210 (281)
T 2a4a_A          171 EDLIIKTTLAVLNGNADFIKTST-GK--------VQINATPSSVEYIIK  210 (281)
T ss_dssp             HHHHHHHHHHHHTTTCSEEECCC-SC--------SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHH
Confidence            33223567788999999999885 22        235788888776664

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=92.50  E-value=0.97  Score=45.84  Aligned_cols=142  Identities=16%  Similarity=0.037  Sum_probs=86.8

Q ss_pred             hHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEee-ecCCCCC
Q 012949          232 GFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV-VGCPVEG  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~-~g~p~~~  298 (452)
                      ..+.|.++|.|.|.|-.+-        |+..  ....+|-|.++-.+.+.++++.+|+. |- .|.+-|+.. +-.....
T Consensus       171 aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~  250 (377)
T 2r14_A          171 AAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTD  250 (377)
T ss_dssp             HHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCC
T ss_pred             HHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCC
Confidence            4556678999999986532        2221  22346777887777788888888774 43 565445421 0000012


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCc-CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  376 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~V  376 (452)
                      ..+.+...++++.+.++|++.|.+..-. -...|..-.++++.+++.++. +|..=.  ..  -...+..+++.| ||.|
T Consensus       251 ~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~i-Pvi~~G--gi--~~~~a~~~l~~g~aD~V  325 (377)
T 2r14_A          251 DEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKG-GLIYCG--NY--DAGRAQARLDDNTADAV  325 (377)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCS-EEEEES--SC--CHHHHHHHHHTTSCSEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCC-CEEEEC--CC--CHHHHHHHHHCCCceEE
Confidence            3456788899999999999999885411 000010013567788888764 444322  22  267888999998 8876


Q ss_pred             ee
Q 012949          377 DC  378 (452)
Q Consensus       377 D~  378 (452)
                      -.
T Consensus       326 ~i  327 (377)
T 2r14_A          326 AF  327 (377)
T ss_dssp             EE
T ss_pred             ee
Confidence            54

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=92.48  E-value=0.93  Score=48.54  Aligned_cols=152  Identities=15%  Similarity=0.081  Sum_probs=88.2

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhh
Q 012949          134 PRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQR  210 (452)
Q Consensus       134 LRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r  210 (452)
                      ++||.+.    .+.+..++.++.+.+.|-+.|++|...     +.....+++.+.++.+   .++.+++=+..       
T Consensus       330 f~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIgpg~-----~~v~~~ee~~rvv~~i~~~~~vpisIDT~~-------  393 (566)
T 1q7z_A          330 LWAEMQK----GNEEIVIKEAKTQVEKGAEVLDVNFGI-----ESQIDVRYVEKIVQTLPYVSNVPLSLDIQN-------  393 (566)
T ss_dssp             HHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECSS-----GGGSCHHHHHHHHHHHHHHTCSCEEEECCC-------
T ss_pred             HHHHhhc----CCHHHHHHHHHHHHHCCCCEEEECCCC-----CCCCHHHHHHHHHHHHHhhCCceEEEeCCC-------
Confidence            6666653    366888999999999999999999322     1223344444444433   23333322221       


Q ss_pred             hhhhhhccchhhhhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          211 SILFQQCHASVISSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       211 ~~~~~~~~~~~i~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                                         .+-+++|+++  |.+.|.=.....                +++.++++.+++.|..+.  +
T Consensus       394 -------------------~~v~eaal~~~~G~~iINdis~~~----------------~~~~~~~~~~~~~g~~vV--~  436 (566)
T 1q7z_A          394 -------------------VDLTERALRAYPGRSLFNSAKVDE----------------EELEMKINLLKKYGGTLI--V  436 (566)
T ss_dssp             -------------------HHHHHHHHHHCSSCCEEEEEESCH----------------HHHHHHHHHHHHHCCEEE--E
T ss_pred             -------------------HHHHHHHHHhcCCCCEEEECCcch----------------hhHHHHHHHHHHhCCeEE--E
Confidence                               2367888888  988765433211                334566778888898764  4


Q ss_pred             Eeeec-CCCCCCCC--HHHHHHHHHHHHHCCc-CEEEE---cCCcCCCcHHHHHHHHHHHH
Q 012949          289 SCVVG-CPVEGAIP--PSKVAYVAKELHDMGC-FEISL---GDTIGVGTPGTVVPMLEAVM  342 (452)
Q Consensus       289 ~~~~g-~p~~~r~d--~e~l~~~a~~l~~~Ga-d~I~L---~DT~G~~~P~~v~~li~~l~  342 (452)
                      +..-+ .|..  ++  .+++.+..+.+.++|+ +.|.|   ..++|...  +-.++++.++
T Consensus       437 m~~~~~~p~t--~~~~~~~l~~~~~~a~~~Gi~~~IilDPg~~~igfgk--~~~~~l~~~~  493 (566)
T 1q7z_A          437 LLMGKDVPKS--FEERKEYFEKALKILERHDFSDRVIFDPGVLPLGAEG--KPVEVLKTIE  493 (566)
T ss_dssp             ESCSSSCCCS--HHHHHHHHHHHHHHHHHTTCGGGEEEECCCCCTTTTC--CHHHHHHHHH
T ss_pred             EeCCCCCcCC--HHHHHHHHHHHHHHHHHCCCCCcEEEeCCCCcccCcH--HHHHHHHHHH
Confidence            43211 1110  11  3566777788889999 56665   12336666  4444444443

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=92.47  E-value=1.1  Score=44.37  Aligned_cols=127  Identities=10%  Similarity=0.044  Sum_probs=84.8

Q ss_pred             hHHHHHHcCCCEEEEE--e-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-EEeee-cCCCCCCCCHHHHH
Q 012949          232 GFEAAIAAGAKEVAIF--A-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY-VSCVV-GCPVEGAIPPSKVA  306 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~--~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~-l~~~~-g~p~~~r~d~e~l~  306 (452)
                      ++|.|++.|.|-|.+.  + .-|+.         ..+.++.+.++++.|+++|+.+.+- +.+-. |.......+++.+.
T Consensus       133 sVe~AvrlGADaV~~l~~i~~Gs~~---------e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va  203 (307)
T 3fok_A          133 NVSSMVDRGVDFAKTLVRINLSDAG---------TAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVI  203 (307)
T ss_dssp             CHHHHHHHTCCEEEEEEEECTTCTT---------HHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHH
T ss_pred             CHHHHHHCCCCEEEEEEEECCCChh---------HHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHH
Confidence            6888999999987743  2 12221         3478999999999999999998643 12212 22222236899999


Q ss_pred             HHHHHHHHCCcC----EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC---CCcCcHHHHHHHHHH-cCCCEEee
Q 012949          307 YVAKELHDMGCF----EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH---DTYGQSLPNILISLQ-MGISTVDC  378 (452)
Q Consensus       307 ~~a~~l~~~Gad----~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H---nd~GlA~ANaLaAl~-aGa~~VD~  378 (452)
                      ..++.+.++|+|    .|-+.=|      +.    ++.+.+..| +|+-+=.=   +|.--.+.....|++ +|+..+..
T Consensus       204 ~aaRiAaELGADs~~tivK~~y~------e~----f~~Vv~a~~-vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~v  272 (307)
T 3fok_A          204 QSVAIAAGLGNDSSYTWMKLPVV------EE----MERVMESTT-MPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTV  272 (307)
T ss_dssp             HHHHHHHTCSSCCSSEEEEEECC------TT----HHHHGGGCS-SCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEE
T ss_pred             HHHHHHHHhCCCcCCCEEEeCCc------HH----HHHHHHhCC-CCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEee
Confidence            999999999999    8887433      22    355555544 34444332   244567788888999 79876654

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=92.44  E-value=8.4  Score=37.42  Aligned_cols=192  Identities=17%  Similarity=0.180  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~~  216 (452)
                      .++.+.-.++++.|.+.|++.|-+.--...  .+.+. .+|-.+.++   +..+-++++++    .+.+           
T Consensus        24 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE--~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~~~t~-----------   89 (297)
T 3flu_A           24 SIHYEQLRDLIDWHIENGTDGIVAVGTTGE--SATLS-VEEHTAVIEAVVKHVAKRVPVIAGTGANNTV-----------   89 (297)
T ss_dssp             CBCHHHHHHHHHHHHHTTCCEEEESSTTTT--GGGSC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHH-----------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCccccC--cccCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCcCHH-----------
Confidence            579999999999999999998887422211  23342 333333333   32222344333    1221           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                         +        ..+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-++.+.+   ..++++..|=     .|.
T Consensus        90 ---~--------ai~la~~a~~~Gadavlv~~P~---y----~~~~~~~l~~~f~~va~---a~~lPiilYn-----~P~  143 (297)
T 3flu_A           90 ---E--------AIALSQAAEKAGADYTLSVVPY---Y----NKPSQEGIYQHFKTIAE---ATSIPMIIYN-----VPG  143 (297)
T ss_dssp             ---H--------HHHHHHHHHHTTCSEEEEECCC---S----SCCCHHHHHHHHHHHHH---HCCSCEEEEE-----CHH
T ss_pred             ---H--------HHHHHHHHHHcCCCEEEECCCC---C----CCCCHHHHHHHHHHHHH---hCCCCEEEEE-----CCc
Confidence               1        1235567888999999887652   1    12355555555544443   3478876433     232


Q ss_pred             --CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCC
Q 012949          297 --EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       297 --~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa  373 (452)
                        ....+++.+.+++    +. ...+.++||.|-  ..++.++++    ..+. .+.+ -++++      ..+.++.+|+
T Consensus       144 ~tg~~l~~~~~~~La----~~-pnivgiKdssgd--~~~~~~~~~----~~~~-~f~v~~G~d~------~~l~~l~~G~  205 (297)
T 3flu_A          144 RTVVSMTNDTILRLA----EI-PNIVGVKEASGN--IGSNIELIN----RAPE-GFVVLSGDDH------TALPFMLCGG  205 (297)
T ss_dssp             HHSSCCCHHHHHHHT----TS-TTEEEEEECSCC--HHHHHHHHH----HSCT-TCEEEECCGG------GHHHHHHTTC
T ss_pred             hhccCCCHHHHHHHH----cC-CCEEEEEeCCCC--HHHHHHHHH----hcCC-CeEEEECcHH------HHHHHHhCCC
Confidence              2235677666554    33 478999999874  455555543    3443 2443 44432      3567788998


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +   +.+.|          ++|..-+.++...+
T Consensus       206 ~---G~is~----------~an~~P~~~~~l~~  225 (297)
T 3flu_A          206 H---GVITV----------AANAAPKLFADMCR  225 (297)
T ss_dssp             C---EEEES----------GGGTCHHHHHHHHH
T ss_pred             C---EEEec----------hHhhhHHHHHHHHH
Confidence            6   34443          34555565555544

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=92.34  E-value=2  Score=43.41  Aligned_cols=136  Identities=20%  Similarity=0.148  Sum_probs=84.5

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCCC-C
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPV-E  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p~-~  297 (452)
                      +..++|.++|.|.|.|-.+-        |+..+  ...+|-|.++=.+.+.++++.+|+. |- .|.+-|+..-.... .
T Consensus       165 ~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~  244 (361)
T 3gka_A          165 RGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMG  244 (361)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCC
T ss_pred             HHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCC
Confidence            35567788999999987652        33322  2235667887777777888887764 43 45544542100000 0


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEE
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTV  376 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~V  376 (452)
                      ...+.+...++++.+.++|+|.|.+....  ..|    ++++.+++.++. +|-.=.    |.-...+..+++.| ||.|
T Consensus       245 ~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~i-Pvi~~G----git~e~a~~~l~~G~aD~V  313 (361)
T 3gka_A          245 DSDPAATFGHVARELGRRRIAFLFARESF--GGD----AIGQQLKAAFGG-PFIVNE----NFTLDSAQAALDAGQADAV  313 (361)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCSEEEEECCC--STT----CCHHHHHHHHCS-CEEEES----SCCHHHHHHHHHTTSCSEE
T ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEECCCC--CCH----HHHHHHHHHcCC-CEEEeC----CCCHHHHHHHHHcCCccEE
Confidence            11224678889999999999999886532  122    567788887764 333222    12467788899998 7766


Q ss_pred             e
Q 012949          377 D  377 (452)
Q Consensus       377 D  377 (452)
                      -
T Consensus       314 ~  314 (361)
T 3gka_A          314 A  314 (361)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*

Probab=92.30  E-value=1.2  Score=46.18  Aligned_cols=168  Identities=13%  Similarity=0.130  Sum_probs=84.6

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHH----HHhcc----C
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEA----VRDLE----G  194 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~----i~~~~----~  194 (452)
                      |.-.-|+.+|+ |-..--+  ++.+..++.++.+.+.|.+.|++|.-+ .|. .+.+ +.++.+++    ++.+.    .
T Consensus       191 ~~vMGIlNvTP-DSFsDgg--~~~~~al~~A~~mv~~GAdIIDIGgeSTrPG-a~~V-s~~EE~~Rv~pvI~~l~~~~~~  265 (442)
T 3mcm_A          191 TIRMGIVNLSN-QSFSDGN--FDDNQRKLNLDELIQSGAEIIDIGAESTKPD-AKPI-SIEEEFNKLNEFLEYFKSQLAN  265 (442)
T ss_dssp             SEEEEEEECSS-CC-CCCS--SCCCHHHHHHHHHHHHTCSEEEEECCCCCC-----C-CHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ceEEEEEeCCC-CCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHHHHHhhccc
Confidence            44455777776 4333323  677888999999999999999999643 232 1112 33333333    23221    1


Q ss_pred             --CceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHH--cCCCE-EEEEecCChHHHhhhcCCCHHHHHHH
Q 012949          195 --ARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIA--AGAKE-VAIFASASEAFSKSNINCSIEDSLVR  269 (452)
Q Consensus       195 --~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~--~Gi~~-V~i~~s~Sd~~~~~~~~~s~e~~l~~  269 (452)
                        ..++.-+...+                        .+-+++|++  +|++. |.=.....                  
T Consensus       266 ~~~~vpISIDT~~------------------------~~VaeaAL~~~aGa~i~INDVsg~~------------------  303 (442)
T 3mcm_A          266 LIYKPLVSIDTRK------------------------LEVMQKILAKHHDIIWMINDVECNN------------------  303 (442)
T ss_dssp             CSSCCEEEEECCC------------------------HHHHHHHHHHHGGGCCEEEECCCTT------------------
T ss_pred             cCCCCeEEEeCCC------------------------HHHHHHHHhhCCCCCEEEEcCCCCC------------------
Confidence              12222222111                        236788888  99987 65332211                  


Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCC---------CHHHHHHHHHHHHHCCc--CEEEEcCC-cCCCc-HHHHHH
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI---------PPSKVAYVAKELHDMGC--FEISLGDT-IGVGT-PGTVVP  336 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~---------d~e~l~~~a~~l~~~Ga--d~I~L~DT-~G~~~-P~~v~~  336 (452)
                      ..++++.+++.|..+.  +|..-|.|..-..         =.+++.+.++.+.++|+  +.|.| |- +|... +++-.+
T Consensus       304 d~~m~~v~a~~g~~vV--lMh~~G~P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~Iil-DPGiGF~Kt~~~nl~  380 (442)
T 3mcm_A          304 IEQKAQLIAKYNKKYV--IIHNLGITDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYF-DIGFGFGKKSDTARY  380 (442)
T ss_dssp             HHHHHHHHHHHTCEEE--EECC----------------CTHHHHHHHHHHHHHHHTCCGGGEEE-ECCCC----------
T ss_pred             ChHHHHHHHHhCCeEE--EECCCCCCccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCCCCCCCHHHHHH
Confidence            1245566777887765  5654443321110         03567778888999998  46766 65 44432 334444


Q ss_pred             HHHHH
Q 012949          337 MLEAV  341 (452)
Q Consensus       337 li~~l  341 (452)
                      +++.+
T Consensus       381 lL~~l  385 (442)
T 3mcm_A          381 LLENI  385 (442)
T ss_dssp             --CCH
T ss_pred             HHHHH
Confidence            44443

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=92.27  E-value=9.3  Score=37.52  Aligned_cols=192  Identities=17%  Similarity=0.206  Sum_probs=108.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEe----cchhhhhhhhhhhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLT----PNLKVILQRSILFQQ  216 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~----~~~~~~i~r~~~~~~  216 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+. .+|-.+.++   +..+-++++++    .+.+           
T Consensus        40 ~iD~~~l~~lv~~li~~Gv~Gl~v~GtTG--E~~~Ls-~~Er~~v~~~~v~~~~grvpViaGvg~~st~-----------  105 (314)
T 3qze_A           40 RLDWDSLAKLVDFHLQEGTNAIVAVGTTG--ESATLD-VEEHIQVIRRVVDQVKGRIPVIAGTGANSTR-----------  105 (314)
T ss_dssp             CBCHHHHHHHHHHHHHHTCCEEEESSGGG--TGGGCC-HHHHHHHHHHHHHHHTTSSCEEEECCCSSHH-----------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECcccc--ChhhCC-HHHHHHHHHHHHHHhCCCCcEEEeCCCcCHH-----------
Confidence            57999999999999999999887732111  123332 233333333   32222344333    1111           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                         +        ..+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-++.+.+   ..++++..|=     .|.
T Consensus       106 ---e--------ai~la~~A~~~Gadavlv~~P~---y----~~~s~~~l~~~f~~va~---a~~lPiilYn-----~P~  159 (314)
T 3qze_A          106 ---E--------AVALTEAAKSGGADACLLVTPY---Y----NKPTQEGMYQHFRHIAE---AVAIPQILYN-----VPG  159 (314)
T ss_dssp             ---H--------HHHHHHHHHHTTCSEEEEECCC---S----SCCCHHHHHHHHHHHHH---HSCSCEEEEE-----CHH
T ss_pred             ---H--------HHHHHHHHHHcCCCEEEEcCCC---C----CCCCHHHHHHHHHHHHH---hcCCCEEEEe-----Ccc
Confidence               1        1235567888999999887652   1    12355555555544443   3478876432     232


Q ss_pred             --CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCC
Q 012949          297 --EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       297 --~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa  373 (452)
                        ....+++.+.+++    +. ...+.++||.|-  ..++.+++    +..+. .+.+ -..++.      .+.++.+|+
T Consensus       160 ~tg~~l~~~~~~~La----~~-pnIvgiKdssgd--~~~~~~~~----~~~~~-~f~v~~G~d~~------~l~~l~~Ga  221 (314)
T 3qze_A          160 RTSCDMLPETVERLS----KV-PNIIGIKEATGD--LQRAKEVI----ERVGK-DFLVYSGDDAT------AVELMLLGG  221 (314)
T ss_dssp             HHSCCCCHHHHHHHH----TS-TTEEEEEECSCC--HHHHHHHH----HHSCT-TSEEEESCGGG------HHHHHHTTC
T ss_pred             ccCCCCCHHHHHHHh----cC-CCEEEEEcCCCC--HHHHHHHH----HHcCC-CeEEEecChHH------HHHHHHCCC
Confidence              2245677776665    33 579999999883  45555544    44543 2444 444332      577889998


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      +.   .|.|          ++|..-+.++...+
T Consensus       222 ~G---~is~----------~an~~P~~~~~l~~  241 (314)
T 3qze_A          222 KG---NISV----------TANVAPRAMSDLCA  241 (314)
T ss_dssp             CE---EEES----------GGGTCHHHHHHHHH
T ss_pred             CE---EEec----------HHhhhHHHHHHHHH
Confidence            63   3443          34565565555554

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*

Probab=92.15  E-value=2.2  Score=42.37  Aligned_cols=134  Identities=12%  Similarity=0.096  Sum_probs=88.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +-++.+++-|+..+-++..  +. .-...|.+.++.++.+.+.++.++ +.|+.++.-+++.      -..+++...+.+
T Consensus        82 ~~~~~~~~dgV~y~Eir~~--P~-~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~~  152 (326)
T 3pao_A           82 AYLQKCKAQNVVHVEPFFD--PQ-THTDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFL------RHLSEEQAQKTL  152 (326)
T ss_dssp             HHHHHHHHTTEEEECCEEC--HH-HHHTTTCCHHHHHHHHHHHHHHHHHHHCCEECCEEEEE------TTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEEEC--hH-HhccCCCCHHHHHHHHHHHHHHHHhhCceEEEEEEEeC------CCCCHHHHHHHH
Confidence            4667777889887777653  32 222457899999999888888776 4788776433321      124567666666


Q ss_pred             HHHHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEEe
Q 012949          310 KELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVD  377 (452)
Q Consensus       310 ~~l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD  377 (452)
                      +.+.++  ++..|-|+-.=....|....+.++..++.  +.++.+|+..+.+  ..+...|++ .|+++|+
T Consensus       153 ~~a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rig  219 (326)
T 3pao_A          153 DQALPFRDAFIAVGLDSSEVGHPPSKFQRVFDRARSE--GFLTVAHAGEEGP--PEYIWEALDLLKVERID  219 (326)
T ss_dssp             HHHGGGGGGCSEEEEESCCTTCCGGGGHHHHHHHHHT--TCEECEEESSSSC--HHHHHHHHHTTCCSSEE
T ss_pred             HHHhhccccceeeCCCCCCCCCCHHHHHHHHHHHHHc--CCceeeecCCCCC--HHHHHHHHhcCCCceee
Confidence            666554  45556553222344677788877776653  4578888887754  467778996 8998763

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=92.12  E-value=2.6  Score=40.85  Aligned_cols=155  Identities=15%  Similarity=0.181  Sum_probs=89.6

Q ss_pred             HHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ..-++.++++||+.|-+|...      .|.-.|  -..++++...+.+.. +..+.++-.+.     +.+|. .+.+.+ 
T Consensus        27 ~~sA~l~e~aG~d~ilvGdsl~~~~lG~~dt~~--vtldemi~h~~aV~r~~~~~~vvaD~p-----fgsy~-~~~~a~-   97 (264)
T 1m3u_A           27 YSFAKLFADEGLNVMLVGDSLGMTVQGHDSTLP--VTVADIAYHTAAVRRGAPNCLLLADLP-----FMAYA-TPEQAF-   97 (264)
T ss_dssp             HHHHHHHHHHTCCEEEECTTHHHHTTCCSSSTT--CCHHHHHHHHHHHHHHCTTSEEEEECC-----TTSSS-SHHHHH-
T ss_pred             HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCC--cCHHHHHHHHHHHHhhCCCCcEEEECC-----CCCcC-CHHHHH-
Confidence            345788899999999998431      122111  244677766665422 22222222222     11233 222222 


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------e-cCCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------V-GCPV  296 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~-g~p~  296 (452)
                             +.+.+..++|++-|.+-...              +    +.+.|+.+.+.|++|.+.|-.+      + |.-.
T Consensus        98 -------~~a~rl~kaGa~aVklEgg~--------------e----~~~~I~al~~agipV~gHiGLtPq~v~~~ggf~v  152 (264)
T 1m3u_A           98 -------ENAATVMRAGANMVKIEGGE--------------W----LVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKV  152 (264)
T ss_dssp             -------HHHHHHHHTTCSEEECCCSG--------------G----GHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCC
T ss_pred             -------HHHHHHHHcCCCEEEECCcH--------------H----HHHHHHHHHHCCCCeEeeecCCceeecccCCeEE
Confidence                   23446667999999987651              1    2355677778899987666543      1 1112


Q ss_pred             CCCCC--HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          297 EGAIP--PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       297 ~~r~d--~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      -+|++  .+.+.+-++++.++||+.|.+.=     .|.   ++.+.+.+.++.
T Consensus       153 ~grt~~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~---~~a~~it~~l~i  197 (264)
T 1m3u_A          153 QGRGDEAGDQLLSDALALEAAGAQLLVLEC-----VPV---ELAKRITEALAI  197 (264)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHTCCEEEEES-----CCH---HHHHHHHHHCSS
T ss_pred             EeCCHHHHHHHHHHHHHHHHCCCcEEEEec-----CCH---HHHHHHHHhCCC
Confidence            23443  25677778889999999999953     354   355666677654

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A

Probab=92.09  E-value=1.6  Score=43.83  Aligned_cols=124  Identities=11%  Similarity=-0.023  Sum_probs=62.0

Q ss_pred             HHhHHHHHHcCCCEEEEEecCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC--CCCCCCHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP--VEGAIPPSKV  305 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p--~~~r~d~e~l  305 (452)
                      ++.++.|.+.|++.|.+..+..  +...........+...+.+.++.++|++.|..|...|...-..|  ...-.+++.+
T Consensus       119 ~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~~~~~~~~~~~~~t~~~~  198 (387)
T 1bxb_A          119 LETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSM  198 (387)
T ss_dssp             HHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHH
T ss_pred             HHHHHHHHHhCCCEEEECCCCCCccCCccCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCccCCCHHHH
Confidence            3577888899999997764311  00001112233566777788888999998433343344321000  0011244554


Q ss_pred             HHHHHHHHHCCcCE-EE-EcCCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          306 AYVAKELHDMGCFE-IS-LGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       306 ~~~a~~l~~~Gad~-I~-L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                      .+++   .+.+.+. +. .-|+. .+..  ..+.+.++.+.. .+- ...+|++|..+
T Consensus       199 ~~ll---~~v~~~~~vgl~lD~g-H~~~~g~d~~~~l~~~~~-~~~-i~~vHl~D~~~  250 (387)
T 1bxb_A          199 LAFI---HTLDRPERFGLNPEFA-HETMAGLNFVHAVAQALD-AGK-LFHIDLNDQRM  250 (387)
T ss_dssp             HHHH---TTSSSGGGEEECCBHH-HHHHTTCCHHHHHHHHHH-TTC-BCCEECCBCCS
T ss_pred             HHHH---HHcCCccceEEEEecC-cccccCCCHHHHHHHhcc-CCc-EEEEEeCCCCC
Confidence            4444   4445433 33 34652 2211  123344454442 122 35789998754

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=91.99  E-value=1.7  Score=41.11  Aligned_cols=182  Identities=11%  Similarity=0.115  Sum_probs=101.9

Q ss_pred             HHCCCCEEEEecCCCC-CcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949          158 VSSGLPVVEATSFVSP-KWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF  233 (452)
Q Consensus       158 ~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i  233 (452)
                      .+.|-++||+=+.-.. ..-|+.    .+++.++   +..++.+-+|++.+..    -+.|....-++|       .+|+
T Consensus        18 ~~~GAdRIELc~~L~~GGlTPS~----g~i~~~~~~~~~~~ipV~vMIRPR~G----dF~Ys~~E~~~M-------~~Di   82 (224)
T 2bdq_A           18 DKAIISRVELCDNLAVGGTTPSY----GVIKEANQYLHEKGISVAVMIRPRGG----NFVYNDLELRIM-------EEDI   82 (224)
T ss_dssp             CTTTCCEEEEEBCGGGTCBCCCH----HHHHHHHHHHHHTTCEEEEECCSSSS----CSCCCHHHHHHH-------HHHH
T ss_pred             HHcCCCEEEEcCCcccCCcCCCH----HHHHHHHHhhhhcCCceEEEECCCCC----CCcCCHHHHHHH-------HHHH
Confidence            4679999999642110 111322    3445554   4446677777755441    133444333333       4699


Q ss_pred             HHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELH  313 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~  313 (452)
                      +.+++.|++.|.+-+-..|-.+.          .+.++++++.|+  |+++.  +=.+|   |..  ......+..+.+.
T Consensus        83 ~~~~~~GadGvV~G~Lt~dg~iD----------~~~~~~Li~~a~--~~~vT--FHRAF---D~~--~~~d~~~ale~L~  143 (224)
T 2bdq_A           83 LRAVELESDALVLGILTSNNHID----------TEAIEQLLPATQ--GLPLV--FHMAF---DVI--PKSDQKKSIDQLV  143 (224)
T ss_dssp             HHHHHTTCSEEEECCBCTTSSBC----------HHHHHHHHHHHT--TCCEE--ECGGG---GGS--CTTTHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeeECCCCCcC----------HHHHHHHHHHhC--CCeEE--EECch---hcc--CCcCHHHHHHHHH
Confidence            99999999998886644442111          355567777775  56654  33334   211  1123345678889


Q ss_pred             HCCcCEEEEcCCcCCCc---HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCCCEEeec
Q 012949          314 DMGCFEISLGDTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGISTVDCS  379 (452)
Q Consensus       314 ~~Gad~I~L~DT~G~~~---P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa~~VD~S  379 (452)
                      ++|+++|-   |.|...   ..+-.++++.+.+...+ +|.+=.  --|.-..|.-.-+ +.|++.|+.|
T Consensus       144 ~lGv~rIL---TSG~~~~~~a~~g~~~L~~Lv~~a~~-ri~Im~--GgGV~~~Ni~~l~~~tGv~e~H~s  207 (224)
T 2bdq_A          144 ALGFTRIL---LHGSSNGEPIIENIKHIKALVEYANN-RIEIMV--GGGVTAENYQYICQETGVKQAHGT  207 (224)
T ss_dssp             HTTCCEEE---ECSCSSCCCGGGGHHHHHHHHHHHTT-SSEEEE--CSSCCTTTHHHHHHHHTCCEEEET
T ss_pred             HcCCCEEE---CCCCCCCCcHHHHHHHHHHHHHhhCC-CeEEEe--CCCCCHHHHHHHHHhhCCCEEccc
Confidence            99999998   666543   34444555555554332 222211  1244445555545 4799999986

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=91.79  E-value=5.9  Score=39.93  Aligned_cols=137  Identities=10%  Similarity=0.081  Sum_probs=84.5

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhh----------hcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKS----------NINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~----------~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~  298 (452)
                      .+-++.+.+-|+..+-++.... .|...          .-|.+.++.++.+.+.++.+++ .|+.++.-+++.       
T Consensus        81 ~e~~ed~a~dgV~Y~Eir~~P~-~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~~~gi~~~lI~~~~-------  152 (367)
T 3iar_A           81 YEFVEMKAKEGVVYVEVRYSPH-LLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCM-------  152 (367)
T ss_dssp             HHHHHHHHTTTEEEEEEEECGG-GGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE-------
T ss_pred             HHHHHHHHHcCCEEEEEEecHH-HhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEeC-------
Confidence            3466777788998888876421 12211          1278999999998888887754 698887544432       


Q ss_pred             CCCHHHHHHHHHHHHHC---CcCEEEEcCCcCCCcH---HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-c
Q 012949          299 AIPPSKVAYVAKELHDM---GCFEISLGDTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-M  371 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~---Gad~I~L~DT~G~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-a  371 (452)
                      |..++...+.++.+.++   |+-.|-|+-.-....|   ....+.++..++.  +.++.+|+..+.+.  .+...|+. .
T Consensus       153 R~~~~~a~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~~f~~~f~~A~~~--gl~~~~HagE~~~~--~~i~~al~~l  228 (367)
T 3iar_A          153 RHQPNWSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKS--GIHRTVHAGEVGSA--EVVKEAVDIL  228 (367)
T ss_dssp             TTCGGGHHHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCHHHHHHHHHHHHH--TCEEEEEESSSSCH--HHHHHHHHTS
T ss_pred             CCCCHHHHHHHHHHHhhCCCCEEEEcCCCcccCCCcchHHHHHHHHHHHHHc--CCeeEEecCCcCCh--HHHHHHHHcc
Confidence            11122233444444443   4555555422223344   5777777766653  45788999887663  57778895 8


Q ss_pred             CCCEEee
Q 012949          372 GISTVDC  378 (452)
Q Consensus       372 Ga~~VD~  378 (452)
                      |+++|+=
T Consensus       229 g~~RIgH  235 (367)
T 3iar_A          229 KTERLGH  235 (367)
T ss_dssp             CCSEEEE
T ss_pred             CCceeee
Confidence            9998643

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=91.71  E-value=2  Score=39.81  Aligned_cols=175  Identities=14%  Similarity=0.103  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEe----cCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEAT----SFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG----~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +-.++++.+.+.|++.|.+-    .+.     +.. .. +.++.+++..+..  .++-+.-                   
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~-----~~~-~~-~~i~~i~~~~~ip--v~v~ggi-------------------   83 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFG-----RGS-NH-ELLAEVVGKLDVQ--VELSGGI-------------------   83 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTT-----SCC-CH-HHHHHHHHHCSSE--EEEESSC-------------------
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCccccc-----CCC-hH-HHHHHHHHhcCCc--EEEECCC-------------------
Confidence            56788999999999999983    332     111 22 4556665543433  3321110                   


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee---cCCCCCC--
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV---GCPVEGA--  299 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~---g~p~~~r--  299 (452)
                         ...++++.++++|++.|.+-..                .+.+...+.+..++.|..+...+..-.   +.....+  
T Consensus        84 ---~~~~~~~~~l~~Gad~V~lg~~----------------~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~  144 (244)
T 2y88_A           84 ---RDDESLAAALATGCARVNVGTA----------------ALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGW  144 (244)
T ss_dssp             ---CSHHHHHHHHHTTCSEEEECHH----------------HHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGG
T ss_pred             ---CCHHHHHHHHHcCCCEEEECch----------------HhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCc
Confidence               0124788999999999887542                122222233334444433332222110   0000000  


Q ss_pred             -CCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHc---C
Q 012949          300 -IPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQM---G  372 (452)
Q Consensus       300 -~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~a---G  372 (452)
                       .+.+...+.++.+.++|++.|.+-+..  |...+. -.++++.+++..+ +++..    +=|... .+...++++   |
T Consensus       145 ~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~-~~~~~~~l~~~~~-ipvia----~GGI~~~~d~~~~~~~~~~G  218 (244)
T 2y88_A          145 ETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGP-NLDLLAGVADRTD-APVIA----SGGVSSLDDLRAIATLTHRG  218 (244)
T ss_dssp             TEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCC-CHHHHHHHHTTCS-SCEEE----ESCCCSHHHHHHHHTTGGGT
T ss_pred             cCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCC-CHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHHhhccCC
Confidence             000134567778888999988775522  221111 2445666666442 34443    235553 777777777   8


Q ss_pred             CCEE
Q 012949          373 ISTV  376 (452)
Q Consensus       373 a~~V  376 (452)
                      |+.|
T Consensus       219 ad~v  222 (244)
T 2y88_A          219 VEGA  222 (244)
T ss_dssp             EEEE
T ss_pred             CCEE
Confidence            7654

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=91.70  E-value=10  Score=36.75  Aligned_cols=179  Identities=14%  Similarity=0.138  Sum_probs=100.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH---hccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR---DLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~---~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.+.-.++++.|.+.|++.|-+.--...  .+.+. .+|-.+.++   +..+-++++++-.-.          ....+
T Consensus        17 ~iD~~~l~~lv~~li~~Gv~gl~~~GttGE--~~~Ls-~~Er~~v~~~~~~~~~grvpviaGvg~----------~~t~~   83 (294)
T 2ehh_A           17 EVDYEALGNLIEFHVDNGTDAILVCGTTGE--SPTLT-FEEHEKVIEFAVKRAAGRIKVIAGTGG----------NATHE   83 (294)
T ss_dssp             EECHHHHHHHHHHHHTTTCCEEEESSTTTT--GGGSC-HHHHHHHHHHHHHHHTTSSEEEEECCC----------SCHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCCEEEECccccC--hhhCC-HHHHHHHHHHHHHHhCCCCcEEEecCC----------CCHHH
Confidence            478899999999999999998877422211  23342 233333333   222224444321000          00011


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--CC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--EG  298 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--~~  298 (452)
                      .        .+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-+..+.+   ..++++..|=     .|.  ..
T Consensus        84 a--------i~la~~A~~~Gadavlv~~P~---y----~~~s~~~l~~~f~~va~---a~~lPiilYn-----~P~~tg~  140 (294)
T 2ehh_A           84 A--------VHLTAHAKEVGADGALVVVPY---Y----NKPTQRGLYEHFKTVAQ---EVDIPIIIYN-----IPSRTCV  140 (294)
T ss_dssp             H--------HHHHHHHHHTTCSEEEEECCC---S----SCCCHHHHHHHHHHHHH---HCCSCEEEEE-----CHHHHSC
T ss_pred             H--------HHHHHHHHhcCCCEEEECCCC---C----CCCCHHHHHHHHHHHHH---hcCCCEEEEe-----CCcccCc
Confidence            1        234567788999999887652   1    22355666665544433   4477776433     232  22


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCE
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      ..+++.+.++++.   . ...+.++|+.|-  ..++.++++.    .+. .+.+ -.+|+      ..+.++.+|++.
T Consensus       141 ~l~~~~~~~La~~---~-pnivgiKds~gd--~~~~~~~~~~----~~~-~f~v~~G~d~------~~~~~l~~G~~G  201 (294)
T 2ehh_A          141 EISVDTMFKLASE---C-ENIVASKESTPN--MDRISEIVKR----LGE-SFSVLSGDDS------LTLPMMALGAKG  201 (294)
T ss_dssp             CCCHHHHHHHHHH---C-TTEEEEEECCSC--HHHHHHHHHH----HCT-TSEEEESSGG------GHHHHHHTTCCE
T ss_pred             CCCHHHHHHHHhh---C-CCEEEEEeCCCC--HHHHHHHHHh----cCC-CeEEEECcHH------HHHHHHHCCCCE
Confidence            4678888877632   2 569999999885  4556555543    342 3443 44443      356677899763

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=91.63  E-value=2.6  Score=42.12  Aligned_cols=139  Identities=20%  Similarity=0.083  Sum_probs=87.4

Q ss_pred             hHHHHHHcCCCEEEEEec--------CChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCC
Q 012949          232 GFEAAIAAGAKEVAIFAS--------ASEAF--SKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s--------~Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~  298 (452)
                      ..+.|.++|.|.|.|-..        .|+..  ....+|-|.++=.+.+.++++.+|+.   .+.|.+-|+.. .. ..+
T Consensus       148 AA~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~-~~-~~~  225 (343)
T 3kru_A          148 AAKRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSAD-DY-MEG  225 (343)
T ss_dssp             HHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECC-CS-STT
T ss_pred             HHhhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeech-hh-hcc
Confidence            556777899999888632        23322  22346778888888888999999885   35666556531 11 122


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcC--CcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGD--TIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-  372 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-  372 (452)
                      ..+.+...++++.+.++ +|.|.+..  +...   ..|..-.++++.+++.++. +|..=.--   .....+..+++.| 
T Consensus       226 g~~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi---~t~e~Ae~~l~~G~  300 (343)
T 3kru_A          226 GINIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNI-KTSAVGLI---TTQELAEEILSNER  300 (343)
T ss_dssp             SCCHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTC-EEEEESSC---CCHHHHHHHHHTTS
T ss_pred             CccHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcCc-ccceeeee---eHHHHHHHHHhchh
Confidence            35788999999999999 99998841  1110   1233335667788887653 44332210   1245677888888 


Q ss_pred             CCEEe
Q 012949          373 ISTVD  377 (452)
Q Consensus       373 a~~VD  377 (452)
                      ||.|-
T Consensus       301 aD~V~  305 (343)
T 3kru_A          301 ADLVA  305 (343)
T ss_dssp             CSEEE
T ss_pred             hHHHH
Confidence            77653

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=91.63  E-value=4.8  Score=39.40  Aligned_cols=184  Identities=15%  Similarity=0.127  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHC----CCCEEEEecCC-----CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhh
Q 012949          146 PTGVKVELIRRLVSS----GLPVVEATSFV-----SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQ  215 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~----Gv~~IEvG~~~-----s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~  215 (452)
                      +.++..++++.|.++    ++..+=-++|-     +|.-.-.+ .-++=++.+++.. ...+.+++--..          
T Consensus        32 ~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~-g~~~GL~~L~~~~~e~Glp~~Tev~d----------  100 (285)
T 3sz8_A           32 SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGV-GLDEGLKIFAEVKARFGVPVITDVHE----------  100 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCS-CHHHHHHHHHHHHHHHCCCEEEECCS----------
T ss_pred             CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCc-CHHHHHHHHHHHHHhcCCeEEEEeCC----------
Confidence            788999999999876    47655544432     22111111 1233344444321 223333332111          


Q ss_pred             hccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          216 QCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       216 ~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                                    .+.++.+.+. ++.+.|...  +..   |        .    ++++++-+.|.+|.  ++.     
T Consensus       101 --------------~~~v~~l~~~-vd~lqIgA~--~~~---n--------~----~LLr~va~~gkPVi--lK~-----  141 (285)
T 3sz8_A          101 --------------AEQAAPVAEI-ADVLQVPAF--LAR---Q--------T----DLVVAIAKAGKPVN--VKK-----  141 (285)
T ss_dssp             --------------GGGHHHHHTT-CSEEEECGG--GTT---C--------H----HHHHHHHHTSSCEE--EEC-----
T ss_pred             --------------HHHHHHHHHh-CCEEEECcc--ccC---C--------H----HHHHHHHccCCcEE--EeC-----
Confidence                          1366777777 898887642  110   0        1    24455556788876  332     


Q ss_pred             CCCC-CCHHHHHHHHHHHHHCCcCEEEEcCCcCCC-cHHHH--HHHHHHHHHhCCCccEEE-EeCCC----------cC-
Q 012949          296 VEGA-IPPSKVAYVAKELHDMGCFEISLGDTIGVG-TPGTV--VPMLEAVMAVVPVEKLAV-HLHDT----------YG-  359 (452)
Q Consensus       296 ~~~r-~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~-~P~~v--~~li~~l~~~~p~~~l~v-H~Hnd----------~G-  359 (452)
                        +. .+++++...++.+.+.|.+.|.|+.-.-.. .+..+  -.-+..+++.+++.+|.+ ..|-.          .| 
T Consensus       142 --G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~  219 (285)
T 3sz8_A          142 --PQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGR  219 (285)
T ss_dssp             --CTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCCEEEETTTTCC------------
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCc
Confidence              23 477888888899999999878887633211 11100  223566788887568888 77752          22 


Q ss_pred             --cHHHHHHHHHHcCCC--EEeeccc
Q 012949          360 --QSLPNILISLQMGIS--TVDCSVA  381 (452)
Q Consensus       360 --lA~ANaLaAl~aGa~--~VD~Sv~  381 (452)
                        +...-+++|+.+||+  .|+.=..
T Consensus       220 r~~v~~~a~AAvA~GA~gl~IE~H~~  245 (285)
T 3sz8_A          220 RRQVLDLARAGIAVGIAGLFLEAHPD  245 (285)
T ss_dssp             ---HHHHHHHHHHHCCSEEEEEEESC
T ss_pred             hhhHHHHHHHHHHhCCCEEEEEeccC
Confidence              337788999999999  7765444

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=91.59  E-value=0.77  Score=45.22  Aligned_cols=110  Identities=18%  Similarity=0.074  Sum_probs=74.0

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcH------HHHHHHHHHHHHhCCCc--c--EEEEeCCC
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTP------GTVVPMLEAVMAVVPVE--K--LAVHLHDT  357 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P------~~v~~li~~l~~~~p~~--~--l~vH~Hnd  357 (452)
                      |+.+.|+|.. ..+.+.-..-++.+.+.||+.|-+.=-+|.+.-      +.+++-|+.+++..++.  +  |+.-.=++
T Consensus        86 V~tVigFP~G-~~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~  164 (297)
T 4eiv_A           86 VCAAVNFPEG-TGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQG  164 (297)
T ss_dssp             EEEEESTTTC-CCCHHHHHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCC
T ss_pred             EEEEecCCCC-CCCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            4455677864 556666666777888899999988877777554      45777777888766432  2  22222233


Q ss_pred             cCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          358 YGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .-+=...+..|+++|||.|=+|-+ .+        +|++.+|++..+.+.
T Consensus       165 ~e~i~~A~~ia~~AGADFVKTSTG-f~--------~~gAT~edV~lM~~~  205 (297)
T 4eiv_A          165 GDIISRAAVAALEGGADFLQTSSG-LG--------ATHATMFTVHLISIA  205 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHH
Confidence            332235678899999999998854 43        457888888777653

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=91.57  E-value=2.8  Score=42.22  Aligned_cols=134  Identities=19%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHHHh--hhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAFSK--SNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCPVEG  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p~~~  298 (452)
                      +..++|.++|.|.|.|-.+-        |+..++  ..+|-|.+.=.+.+.++++.+|+. |- .|.+-++..-  ...+
T Consensus       157 ~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~--~~~g  234 (362)
T 4ab4_A          157 SGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRA--DAHD  234 (362)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTC--CSSS
T ss_pred             HHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccc--cccc
Confidence            35667888999999987652        333222  235778887788888888888764 43 4554454210  0011


Q ss_pred             ---CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          299 ---AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       299 ---r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                         ..+.+...++++.+.++|+|.|.+....  ..|    ++++.+++.++. +|-.=.    |.-...+..+++.| ||
T Consensus       235 ~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~i-Pvi~~G----git~e~a~~~l~~g~aD  303 (362)
T 4ab4_A          235 MGDADRAETFTYVARELGKRGIAFICSRERE--ADD----SIGPLIKEAFGG-PYIVNE----RFDKASANAALASGKAD  303 (362)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSEEEEECCC--CTT----CCHHHHHHHHCS-CEEEES----SCCHHHHHHHHHTTSCS
T ss_pred             cCCCCcHHHHHHHHHHHHHhCCCEEEECCCC--CCH----HHHHHHHHHCCC-CEEEeC----CCCHHHHHHHHHcCCcc
Confidence               1224678889999999999999886532  112    467778887764 333221    22457788899998 78


Q ss_pred             EEe
Q 012949          375 TVD  377 (452)
Q Consensus       375 ~VD  377 (452)
                      .|-
T Consensus       304 ~V~  306 (362)
T 4ab4_A          304 AVA  306 (362)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=91.56  E-value=2.4  Score=41.17  Aligned_cols=131  Identities=13%  Similarity=0.144  Sum_probs=78.3

Q ss_pred             hHHHHHHcCCC---EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          232 GFEAAIAAGAK---EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       232 ~ie~a~~~Gi~---~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .++.+.++|+|   .|.+-++.-.......++.+.+.    +.++++.+|+. +++|.+-+.     ++   .+.+.+.+
T Consensus       111 ~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~----~~~ii~~vr~~~~~Pv~vK~~-----~~---~~~~~~~~  178 (314)
T 2e6f_A          111 MVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEA----MRTYLQQVSLAYGLPFGVKMP-----PY---FDIAHFDT  178 (314)
T ss_dssp             HHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHH----HHHHHHHHHHHHCSCEEEEEC-----CC---CCHHHHHH
T ss_pred             HHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHH----HHHHHHHHHHhcCCCEEEEEC-----CC---CCHHHHHH
Confidence            55666677888   77775431111111223445443    34445555543 667654332     22   36778889


Q ss_pred             HHHHHHHCC-cCEEEEcCCcC----------------------CCcH---HHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          308 VAKELHDMG-CFEISLGDTIG----------------------VGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       308 ~a~~l~~~G-ad~I~L~DT~G----------------------~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      +++.+.++| +|.|.+.++.|                      +..|   ....++++.+++.+|.++|-.=+    |..
T Consensus       179 ~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~G----GI~  254 (314)
T 2e6f_A          179 AAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCG----GVY  254 (314)
T ss_dssp             HHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEES----SCC
T ss_pred             HHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEEC----CCC
Confidence            999999999 99999888662                      1111   12347788888887555654432    332


Q ss_pred             -HHHHHHHHHcCCCEEee
Q 012949          362 -LPNILISLQMGISTVDC  378 (452)
Q Consensus       362 -~ANaLaAl~aGa~~VD~  378 (452)
                       ...+..++.+||+.|-.
T Consensus       255 ~~~da~~~l~~GAd~V~i  272 (314)
T 2e6f_A          255 SGEDAFLHILAGASMVQV  272 (314)
T ss_dssp             SHHHHHHHHHHTCSSEEE
T ss_pred             CHHHHHHHHHcCCCEEEE
Confidence             35677778899987744

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*

Probab=91.51  E-value=0.94  Score=47.12  Aligned_cols=171  Identities=13%  Similarity=0.145  Sum_probs=97.9

Q ss_pred             CCHHHHHHHHHH-----HHHCC----CCEEEEecCCCCCcccccCCHHHHHHHHHh---ccCCceeEEecchhhhhhhhh
Q 012949          145 VPTGVKVELIRR-----LVSSG----LPVVEATSFVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKVILQRSI  212 (452)
Q Consensus       145 ~~~~~k~~i~~~-----L~~~G----v~~IEvG~~~s~~~~p~~~D~e~v~~~i~~---~~~~~l~~l~~~~~~~i~r~~  212 (452)
                      ++.+...+.++.     ..+.|    +|.|.+++..        .|++.+...++.   ..++.+..- ++.        
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~g~~~~aD~I~l~~~~--------~dpe~~~~~Vk~V~e~~dvPlsID-~dp--------  164 (445)
T 2h9a_A          102 LSEGEIKERVEKINKLVFDRVGQMHSVNLVALKGSS--------QDAATFAKAVATAREVTDLPFILI-GTP--------  164 (445)
T ss_dssp             SCHHHHHHHHHHHHTCEEEETTEEEECCEEEEECTT--------CCHHHHHHHHHHHHHHCCSCEEEE-SCH--------
T ss_pred             CChHhHHHHHHHhhhHHHHhhcccccCcEEEEeCCC--------CCHHHHHHHHHHHHHhcCCCEEEE-CCH--------
Confidence            344444444444     23456    9999998732        244555555543   345555443 332        


Q ss_pred             hhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          213 LFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       213 ~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                                        +-+++|++.+.+.=-+..+++.               +++.++...|++.+..|.+     .
T Consensus       165 ------------------~vleaale~~~d~~pLIns~t~---------------en~~~~~~la~~y~~~vV~-----~  206 (445)
T 2h9a_A          165 ------------------EQLAAALETEGANNPLLYAATA---------------DNYEQMVELAKKYNVPLTV-----S  206 (445)
T ss_dssp             ------------------HHHHHHHHHHGGGCCEEEEECT---------------TTHHHHHHHHHHHTCCEEE-----E
T ss_pred             ------------------HHHHHHHHhcCCCCCEEEECCH---------------HHHHHHHHHHHHhCCeEEE-----E
Confidence                              3778888887752122233333               2345667888888988763     2


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC---CCcc-----EEEEeCCCcCcHHHH
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV---PVEK-----LAVHLHDTYGQSLPN  364 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~---p~~~-----l~vH~Hnd~GlA~AN  364 (452)
                      + +     +.+.+.++.+.+.++|.+.|.| |..... -....+-+..+|+..   ++.+     +..-..-+--+....
T Consensus       207 ~-~-----~l~~l~~lv~~a~~~Gi~~IiL-DP~~~~-~~~sl~~~~~IR~~al~~~d~~lg~P~i~~vs~~d~~~ea~l  278 (445)
T 2h9a_A          207 A-K-----GLDALAELVQKITALGYKNLIL-DPQPEN-ISEGLFYQTQIRRLAIKKLFRPFGYPTIAFALDENPYQAVME  278 (445)
T ss_dssp             C-S-----SHHHHHHHHHHHHHTTCCCEEE-ECCCSS-HHHHHHHHHHHHHHHHHSCCGGGCSCBEEECCCSSHHHHHHH
T ss_pred             c-C-----CHHHHHHHHHHHHHCCCCcEEE-cCCchh-HHHHHHHHHHHHHhhhcCCCcccCCCeeecCCchhHHHHHHH
Confidence            1 1     5788999999999999988886 765322 334444555555542   2211     333332222245555


Q ss_pred             HHHHHHcCCCEEee
Q 012949          365 ILISLQMGISTVDC  378 (452)
Q Consensus       365 aLaAl~aGa~~VD~  378 (452)
                      +..+++.||+++=+
T Consensus       279 A~~~~~~GasIl~~  292 (445)
T 2h9a_A          279 ASVYIAKYAGIIVL  292 (445)
T ss_dssp             HHHHHHTTCSEEEE
T ss_pred             HHHHHHcCCeEEEe
Confidence            55558999997744

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=91.48  E-value=0.3  Score=47.64  Aligned_cols=145  Identities=16%  Similarity=0.072  Sum_probs=91.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC-CCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC-PVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~-p~~~r~d~e~l~~~a  309 (452)
                      +|+-.....-+|.+-+....+-++             ..+++.++.++++|+.|.      +|. -.+.......+.++.
T Consensus        56 ~DlLe~ag~yID~lKfg~GTs~l~-------------~~l~ekI~l~~~~gV~v~------~GGTlfE~~l~qg~~~~yl  116 (276)
T 1u83_A           56 KDAIAGASDYIDFVKFGWGTSLLT-------------KDLEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFH  116 (276)
T ss_dssp             HHHHHHHGGGCCEEEECTTGGGGC-------------TTHHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHhhhhcceEEecCcchhhh-------------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCcHHHHH
Confidence            455555667799999988776653             226788999999999875      221 011111112566788


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE-------EEeCCCcCcHHHHHHHHHHcCCCEE--eecc
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA-------VHLHDTYGQSLPNILISLQMGISTV--DCSV  380 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~-------vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv  380 (452)
                      +.+.++|.+.|-|.|..--+.++.-.++|+.+++.+.. ..+       ...=-+...-+..+...++|||+.|  ++-=
T Consensus       117 ~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~f~V-l~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRE  195 (276)
T 1u83_A          117 RYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFLV-LSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARE  195 (276)
T ss_dssp             HHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTSEE-EEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC---
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhhcEE-eeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeec
Confidence            88899999999999999999999999999988876521 111       1333466777889999999999955  5511


Q ss_pred             ---cCCCCCCCCCCCCCcccHHHH
Q 012949          381 ---AGLGGCPYAKGASGNVATEDV  401 (452)
Q Consensus       381 ---~GlGecP~a~graGNaalE~v  401 (452)
                         .|+=+      ..|+.-.+.+
T Consensus       196 SG~~Gi~~------~~g~~r~d~v  213 (276)
T 1u83_A          196 SGTGGICS------SSGDVRFQIV  213 (276)
T ss_dssp             ---------------------CCH
T ss_pred             cCCCCccC------CCCCCcHHHH
Confidence               26655      6677776655

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=91.47  E-value=11  Score=36.75  Aligned_cols=180  Identities=13%  Similarity=0.149  Sum_probs=101.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+.+  ..++++.+.+..+-++++++    .+.+            
T Consensus        29 ~iD~~~l~~lv~~li~~Gv~gl~v~GtTG--E~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~------------   94 (306)
T 1o5k_A           29 ELDLESYERLVRYQLENGVNALIVLGTTG--ESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTE------------   94 (306)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEESSGGG--TGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHH------------
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeCcccc--chhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHH------------
Confidence            47899999999999999999987742111  1133322  22333333322222333332    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-  296 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-  296 (452)
                        +        ..+-.+.|.++|+|-+.+..+-   +    ++-|.++.++-++.+   |...++++..|=     .|. 
T Consensus        95 --~--------ai~la~~A~~~Gadavlv~~P~---y----~~~s~~~l~~~f~~v---a~a~~lPiilYn-----~P~~  149 (306)
T 1o5k_A           95 --K--------TLKLVKQAEKLGANGVLVVTPY---Y----NKPTQEGLYQHYKYI---SERTDLGIVVYN-----VPGR  149 (306)
T ss_dssp             --H--------HHHHHHHHHHHTCSEEEEECCC---S----SCCCHHHHHHHHHHH---HTTCSSCEEEEE-----CHHH
T ss_pred             --H--------HHHHHHHHHhcCCCEEEECCCC---C----CCCCHHHHHHHHHHH---HHhCCCCEEEEe-----Cccc
Confidence              1        1224566778999999887652   1    123555555555444   334577775433     232 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE-EEeCCCcCcHHHHHHHHHHcCCC
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~-vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                       ....+++.+.++++   +. ...+.++|+.|-  ..++.++++......++  +. +-..++      ..+.++.+|++
T Consensus       150 tg~~l~~~~~~~La~---~~-pnIvgiKdssgd--~~~~~~~~~~~~~~~~~--f~v~~G~d~------~~l~~l~~G~~  215 (306)
T 1o5k_A          150 TGVNVLPETAARIAA---DL-KNVVGIXEANPD--IDQIDRTVSLTKQARSD--FMVWSGNDD------RTFYLLCAGGD  215 (306)
T ss_dssp             HSCCCCHHHHHHHHH---HC-TTEEEEEECCCC--HHHHHHHHHHHHHHCTT--CEEEESSGG------GHHHHHHHTCC
T ss_pred             cCcCCCHHHHHHHHH---hC-CCEEEEeCCCCC--HHHHHHHHHhcCCCCCc--EEEEECcHH------HHHHHHHCCCC
Confidence             22457788887763   22 579999999975  56777777665432223  33 444443      35566788976


Q ss_pred             EE
Q 012949          375 TV  376 (452)
Q Consensus       375 ~V  376 (452)
                      .+
T Consensus       216 G~  217 (306)
T 1o5k_A          216 GV  217 (306)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=91.45  E-value=2.1  Score=43.14  Aligned_cols=121  Identities=12%  Similarity=0.126  Sum_probs=77.2

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC---------------CCC-------------------CCCCH-----
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE-------------------GAIPP-----  302 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~---------------p~~-------------------~r~d~-----  302 (452)
                      ..++.++..+++++.+++.|-++.+-|... |-               |-+                   ....|     
T Consensus        75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~  153 (364)
T 1vyr_A           75 HSPEQIAAWKKITAGVHAEDGRIAVQLWHT-GRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALEL  153 (364)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCH
Confidence            345667778888888999998887667641 10               000                   00122     


Q ss_pred             -------HHHHHHHHHHHHCCcCEEEEc-------------------CCcCCCcH---HHHHHHHHHHHHhCCCccEEE-
Q 012949          303 -------SKVAYVAKELHDMGCFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVPVEKLAV-  352 (452)
Q Consensus       303 -------e~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~P---~~v~~li~~l~~~~p~~~l~v-  352 (452)
                             +.+.+.|+.+.++|+|.|-|-                   |-.|....   ..+.++|+++++.++..+|.+ 
T Consensus       154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vr  233 (364)
T 1vyr_A          154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIR  233 (364)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEE
Confidence                   466778888899999988882                   55554433   347788999999996337877 


Q ss_pred             ----EeCCC---cCcHHH----HHHHHHHcCCCEEeecccCC
Q 012949          353 ----HLHDT---YGQSLP----NILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       353 ----H~Hnd---~GlA~A----NaLaAl~aGa~~VD~Sv~Gl  383 (452)
                          ..+++   .+..+.    -+.+.-++|+++|+.+..+.
T Consensus       234 ls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~  275 (364)
T 1vyr_A          234 VSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL  275 (364)
T ss_dssp             ECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred             EccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcc
Confidence                22332   132333    24444579999999986543

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=91.42  E-value=3.5  Score=38.78  Aligned_cols=207  Identities=14%  Similarity=0.075  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec-chhhhhhhhhhhhhccchhhhhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~-~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      +-.++++.+.+.|++.|++.-..... ...-.+. +.++.+++..++.  +++- ..+                      
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~-~~~g~~~-~~i~~i~~~~~iP--vi~~ggi~----------------------   84 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRDG-TKSGYDT-EMIRFVRPLTTLP--IIASGGAG----------------------   84 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTSS-CSSCCCH-HHHHHHGGGCCSC--EEEESCCC----------------------
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCccc-CCCcccH-HHHHHHHHhcCCC--EEEECCCC----------------------
Confidence            45789999999999999996432110 0001233 3445555433333  3321 111                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--C-cEEEEEEee--ec---CCCCCC
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS--I-PVRGYVSCV--VG---CPVEGA  299 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G--~-~V~~~l~~~--~g---~p~~~r  299 (452)
                       ..++++.++++|++.|.+....-+.  .        ...+.+.   +.++..|  . .+...+..-  -|   -...+-
T Consensus        85 -~~~~i~~~~~~Gad~v~lg~~~~~~--~--------~~~~~~~---~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~  150 (266)
T 2w6r_A           85 -KMEHFLEAFLAGADKALAASVFHFR--E--------IDMRELK---EYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSG  150 (266)
T ss_dssp             -STHHHHHHHHHTCSEEECCCCC----------------CHHHH---HHCC----CCCEEEEEEEEEEETTEEEEEETTT
T ss_pred             -CHHHHHHHHHcCCcHhhhhHHHHhC--C--------CCHHHHH---HHHHHcCCCCCEEEEEEEEEecCCCEEEEECCC
Confidence             1237888899999988876543200  0        0112222   3333444  2 222222210  00   000110


Q ss_pred             --CCHHHHHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCC
Q 012949          300 --IPPSKVAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGIS  374 (452)
Q Consensus       300 --~d~e~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~  374 (452)
                        .+.....++++.+.++|++.|.+.+  ..|...... .++++.+++..+ +|+-.=    -|.. ..+...++++||+
T Consensus       151 ~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~g~~~g~~-~~~i~~l~~~~~-ipvia~----GGI~~~ed~~~~~~~Gad  224 (266)
T 2w6r_A          151 KKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRPLTT-LPIIAS----GGAGKMEHFLEAFLAGAD  224 (266)
T ss_dssp             TEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTTCSCCC-HHHHHHHGGGCC-SCEEEE----SCCCSHHHHHHHHHHTCS
T ss_pred             ceecchhHHHHHHHHHHcCCCEEEEEeecCCCCcCCCC-HHHHHHHHHHcC-CCEEEe----CCCCCHHHHHHHHHcCCH
Confidence              0001234566777889999999955  334332211 456777777553 244332    4555 3677777788988


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCC
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGV  410 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi  410 (452)
                      .|=+.=.=+         .+....+++...|...|+
T Consensus       225 gv~vgsal~---------~~~~~~~~~~~~l~~~g~  251 (266)
T 2w6r_A          225 AALAASVFH---------FREIDMRELKEYLKKHGV  251 (266)
T ss_dssp             EEEESTTTC---------------------------
T ss_pred             HHHccHHHH---------cCCCCHHHHHHHHHHCCC
Confidence            654332211         123367777777777665

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=91.22  E-value=2  Score=38.89  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHH---HHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEA---VRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~---i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +-.+.++.+.+.|++.|++..+..        +.++..+.   ++++. .....+++.                      
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~--------~~~~~~~~~~~l~~~~~~~~v~v~v~----------------------   76 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNA--------PTREMYEIGKTLRQLTREYDALFFVD----------------------   76 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSC--------CHHHHHHHHHHHHHHHHHTTCEEEEE----------------------
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCC--------CHHHHHHHHHHHHHHHHHcCCeEEEc----------------------
Confidence            446788899999999999985321        22223333   33211 112222221                      


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                            +.++.+.++|++.|++....-+              .+.+    +..+ .++.+.  ++.         .+++.
T Consensus        77 ------~~~~~a~~~gad~v~l~~~~~~--------------~~~~----~~~~-~~~~~~--v~~---------~t~~e  120 (215)
T 1xi3_A           77 ------DRVDVALAVDADGVQLGPEDMP--------------IEVA----KEIA-PNLIIG--ASV---------YSLEE  120 (215)
T ss_dssp             ------SCHHHHHHHTCSEEEECTTSCC--------------HHHH----HHHC-TTSEEE--EEE---------SSHHH
T ss_pred             ------ChHHHHHHcCCCEEEECCccCC--------------HHHH----HHhC-CCCEEE--Eec---------CCHHH
Confidence                  2678899999999976422111              1111    1122 344332  211         13444


Q ss_pred             HHHHHHHHHHCCcCEEEE---cCCcCC--CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          305 VAYVAKELHDMGCFEISL---GDTIGV--GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L---~DT~G~--~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      +    ..+.+.|+|.|.+   -+|.+.  ..|.. .+.++.+++..+ .++..    .-|....|...++++|++.|.++
T Consensus       121 ~----~~~~~~g~d~i~~~~~~~~~~~~~~~~~~-~~~l~~l~~~~~-~pvia----~GGI~~~nv~~~~~~Ga~gv~vg  190 (215)
T 1xi3_A          121 A----LEAEKKGADYLGAGSVFPTKTKEDARVIG-LEGLRKIVESVK-IPVVA----IGGINKDNAREVLKTGVDGIAVI  190 (215)
T ss_dssp             H----HHHHHHTCSEEEEECSSCC----CCCCCH-HHHHHHHHHHCS-SCEEE----ESSCCTTTHHHHHTTTCSEEEES
T ss_pred             H----HHHHhcCCCEEEEcCCccCCCCCCCCCcC-HHHHHHHHHhCC-CCEEE----ECCcCHHHHHHHHHcCCCEEEEh
Confidence            3    2345679998886   233210  11222 344566666542 34444    34666678888889999988765

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=91.08  E-value=0.93  Score=44.53  Aligned_cols=82  Identities=21%  Similarity=0.260  Sum_probs=70.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+++... .++|-+|. +++..-++..+..|-++|
T Consensus        31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  110 (304)
T 3l21_A           31 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  110 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   678888899998888764 45777776 788889999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.|=..
T Consensus       111 adavlv~  117 (304)
T 3l21_A          111 AHGLLVV  117 (304)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977664

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}

Probab=91.06  E-value=3.2  Score=40.33  Aligned_cols=219  Identities=13%  Similarity=0.076  Sum_probs=104.7

Q ss_pred             HHHHHHHHHC-CCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhh--hhhhccchhhhhhhh
Q 012949          151 VELIRRLVSS-GLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSI--LFQQCHASVISSNLW  227 (452)
Q Consensus       151 ~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~--~~~~~~~~~i~~~~~  227 (452)
                      .+.++.+.++ |++.||+.++-..     -.+.+++.+.+++ .++++.++.++.-.  .+..  .+.....++-+....
T Consensus        36 ~e~l~~aa~~~G~~~VEl~~~~~~-----~~~~~~l~~~l~~-~Gl~i~~~~~~~~~--~~~~~g~l~~~d~~~r~~~i~  107 (333)
T 3ktc_A           36 IDQINAAKEVGELSYVDLPYPFTP-----GVTLSEVKDALKD-AGLKAIGITPEIYL--QKWSRGAFTNPDPAARAAAFE  107 (333)
T ss_dssp             HHHHHHHHHHSSEEEEEEEESCST-----TCCHHHHHHHHHH-HTCEEEEEEECTTS--GGGTTCSTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEecCCCcc-----hhHHHHHHHHHHH-cCCeEEEEecCcCc--ccccCCCCCCcCHHHHHHHHH
Confidence            3455566777 9999999754211     1356666666654 36777666654210  0000  011111111111111


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CCCCHHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIPPSKV  305 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r~d~e~l  305 (452)
                      ..++.++.|.+.|++.|.+..+....  ......+.++.++++.+.++.+-+..-.+...|.+.-..+..  .-.+.+.+
T Consensus       108 ~~~~~i~~A~~LGa~~vv~~~g~~g~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~lE~~p~~~~~~~~~~~~~~~  185 (333)
T 3ktc_A          108 LMHESAGIVRELGANYVKVWPGQDGW--DYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAIEYKPREPRVKMTWDSAART  185 (333)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCTTCEE--SSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEECCSCSSSSEESSCSHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEECCCCCCc--CCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCCCCccccCCCHHHH
Confidence            12346788888999999776541100  001123456666665555444333222233334421101111  12356666


Q ss_pred             HHHHHHHHHCCcC-EEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          306 AYVAKELHDMGCF-EISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       306 ~~~a~~l~~~Gad-~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ..+++.+   +.+ .-..-|+.=.    ..|.   +.++.++  ..+.-..+|.+|..+            +.+  +-.+
T Consensus       186 ~~ll~~v---~~~~vgl~lD~~H~~~~g~~~~---~~~~~~~--~~~~i~~vH~~D~~~------------~~d--~~~~  243 (333)
T 3ktc_A          186 LLGIEDI---GLDNVGVLLDFGHALYGGESPA---DSAQLII--DRGRLFGMDVNDNLR------------GWD--DDLV  243 (333)
T ss_dssp             HHHHHHH---TCTTEEEEEEHHHHHHTTCCHH---HHHHHHH--HTTCEEEEEBCBCCS------------SSC--CCBC
T ss_pred             HHHHHHc---CCcceEEEEecCcHhhhcCCHH---HHHHHHH--hCCCEEEEEeCCCCC------------CCC--CCcC
Confidence            6666554   333 2223365311    1232   2333322  123234899998654            111  0011


Q ss_pred             cCCCCCCCCCCCCCc-ccHHHHHHHHHcCCCC
Q 012949          381 AGLGGCPYAKGASGN-VATEDVVYMLSGLGVE  411 (452)
Q Consensus       381 ~GlGecP~a~graGN-aalE~vv~~L~~~Gi~  411 (452)
                        +        +.|+ .++..++..|+..|++
T Consensus       244 --~--------G~G~~~d~~~i~~~L~~~gy~  265 (333)
T 3ktc_A          244 --V--------GTVHMTEIFEFFYVLKINNWQ  265 (333)
T ss_dssp             --T--------TSSCHHHHHHHHHHHHHTTCC
T ss_pred             --C--------CCCCHHHHHHHHHHHHHcCCC
Confidence              1        2577 6999999999986664

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=91.02  E-value=0.68  Score=45.88  Aligned_cols=116  Identities=16%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEc-CCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLG-DTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~-DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      ++++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. +|.+. .+..++...-+..+++.+.+.++.
T Consensus         5 ~~~ll~~A~~~~yAV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   74 (307)
T 3n9r_A            5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EE-----CSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            45677899999987752     31     23578888899988888876 44443 223334445667778777776555


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS  406 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~  406 (452)
                      +|+.+|.  |.|........|+++|.+  ++|+|-..+-+         | .-|.+++.+.+
T Consensus        75 VPValHL--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~ee---------Ni~~Tk~vv~~ah  125 (307)
T 3n9r_A           75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAH  125 (307)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCHHH---------HHHHHHHHHHHHH
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHhCCCcEEEECCCCCHHH---------HHHHHHHHHHHHH
Confidence            6777765  445567899999999998  78999887666         4 44556666666

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=90.97  E-value=3.3  Score=41.66  Aligned_cols=182  Identities=16%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.+..+++++.+.++|.+.+-++.+-   +|..+-.+ . ++-++.+++. ....+++++--..                
T Consensus       118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~gl-g-~egl~~l~~~~~e~Gl~~~te~~d----------------  179 (350)
T 1vr6_A          118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL-G-EKGLEYLREAADKYGMYVVTEALG----------------  179 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC-T-HHHHHHHHHHHHHHTCEEEEECSS----------------
T ss_pred             CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCC-C-HHHHHHHHHHHHHcCCcEEEEeCC----------------
Confidence            78999999999999999998888653   33111111 1 2334444432 2233444442111                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-C
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-I  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~  300 (452)
                              ...++.+.+. ++.+.|....-.             ..    .+++++-+.|.+|-  |+.       +. .
T Consensus       180 --------~~~~~~l~~~-vd~lkIgAr~~~-------------n~----~LL~~va~~~kPVi--lk~-------G~~~  224 (350)
T 1vr6_A          180 --------EDDLPKVAEY-ADIIQIGARNAQ-------------NF----RLLSKAGSYNKPVL--LKR-------GFMN  224 (350)
T ss_dssp             --------GGGHHHHHHH-CSEEEECGGGTT-------------CH----HHHHHHHTTCSCEE--EEC-------CTTC
T ss_pred             --------HHHHHHHHHh-CCEEEECccccc-------------CH----HHHHHHHccCCcEE--EcC-------CCCC
Confidence                    1367777777 898887653211             01    23344446788886  332       33 3


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC--CcCC--CcHHHHHH-HHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD--TIGV--GTPGTVVP-MLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D--T~G~--~~P~~v~~-li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +++.+...++.+...|.+.|.||.  +..+  .+++.+.- .+..+++.+. .+|.+   |.=...-+...-+++|+.+|
T Consensus       225 tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vdl~ai~~lk~~~~-lpVi~dssHs~G~~~~v~~~a~AAvA~G  303 (350)
T 1vr6_A          225 TIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLDISAVPIIRKESH-LPILVDPSHSGGRRDLVIPLSRAAIAVG  303 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHHBS-SCEEECHHHHHCSGGGHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhhHHHHHHHHHhhC-CCEEEeCCCCCcccchHHHHHHHHHHhC
Confidence            789999999999999998888874  2222  11222221 2466777653 35655   55344445578889999999


Q ss_pred             CC--EEeeccc
Q 012949          373 IS--TVDCSVA  381 (452)
Q Consensus       373 a~--~VD~Sv~  381 (452)
                      |+  +|+.=+.
T Consensus       304 A~Gl~IE~H~~  314 (350)
T 1vr6_A          304 AHGIIVEVHPE  314 (350)
T ss_dssp             CSEEEEEBCSC
T ss_pred             CCEEEEEecCC
Confidence            99  8887654

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=90.95  E-value=3.5  Score=40.37  Aligned_cols=197  Identities=16%  Similarity=0.104  Sum_probs=113.8

Q ss_pred             HHHHHHHCCCCEEEEecC-CC--CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          153 LIRRLVSSGLPVVEATSF-VS--PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG~~-~s--~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      -++.++++||+.|=+|.. .+  ....|.  .-+.++++..++.+. .+.+++++.. .      .+|+ .+.++.+   
T Consensus        33 sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~-d------~Gyg-~~~~~~~---  101 (287)
T 3b8i_A           33 SARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADA-D------HGYG-NALNVMR---  101 (287)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEEC-T------TCSS-SHHHHHH---
T ss_pred             HHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEC-C------CCCC-CHHHHHH---
Confidence            467788899999999854 21  111222  135678888888764 3445544421 1      3455 3333333   


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                           .+.+..++|+.-|+|-....+-   |...+ =.+.++..++++.+++....-++.|.+--       ++.....+
T Consensus       102 -----~v~~l~~aGa~gv~iED~~~pKrcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRt-------daa~~gl~  168 (287)
T 3b8i_A          102 -----TVVELERAGIAALTIEDTLLPAQFGRKSTD-LICVEEGVGKIRAALEARVDPALTIIART-------NAELIDVD  168 (287)
T ss_dssp             -----HHHHHHHHTCSEEEEECBCCSCCTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEE-------ETTTSCHH
T ss_pred             -----HHHHHHHhCCeEEEEcCCCCccccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEec-------hhhhcCHH
Confidence                 6677778999999999876421   11222 24677778777555554443445554321       11122457


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ...+=++.+.++|||.|.+.   |+-+++.+.++.+    .++. |+-+--....++  -+.-.--++|+++|-.....+
T Consensus       169 ~ai~Ra~ay~eAGAd~i~~e---~~~~~~~~~~i~~----~~~~-P~ii~~~g~~~~--~~~~eL~~lGv~~v~~~~~~~  238 (287)
T 3b8i_A          169 AVIQRTLAYQEAGADGICLV---GVRDFAHLEAIAE----HLHI-PLMLVTYGNPQL--RDDARLARLGVRVVVNGHAAY  238 (287)
T ss_dssp             HHHHHHHHHHHTTCSEEEEE---CCCSHHHHHHHHT----TCCS-CEEEECTTCGGG--CCHHHHHHTTEEEEECCCHHH
T ss_pred             HHHHHHHHHHHcCCCEEEec---CCCCHHHHHHHHH----hCCC-CEEEeCCCCCCC--CCHHHHHHcCCcEEEEChHHH
Confidence            78888899999999999996   3444565555544    4432 333322222221  223344578988887665544

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}

Probab=90.87  E-value=16  Score=38.92  Aligned_cols=168  Identities=12%  Similarity=0.120  Sum_probs=95.8

Q ss_pred             CccEEEeCCc---cccCCCCCCCC-CHHHHHHHHHHHHHCC-----CCEEEEecCC-CCCcccccCCHHHHHHHH----H
Q 012949          125 RFVKIVEVGP---RDGLQNEKNTV-PTGVKVELIRRLVSSG-----LPVVEATSFV-SPKWVPQLADARDVMEAV----R  190 (452)
Q Consensus       125 ~~V~I~D~TL---RDG~Q~~~~~~-~~~~k~~i~~~L~~~G-----v~~IEvG~~~-s~~~~p~~~D~e~v~~~i----~  190 (452)
                      .-.-|+.+|+   =||++    .+ +.+..++.++.+.+.|     .+.|++|.-+ .|. .+.+ +.++.++++    +
T Consensus       226 ~iMGIlNvTPDSFsDGG~----~~~~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPG-a~~v-s~eEEl~RvvpvI~  299 (545)
T 2bmb_A          226 YIMAIFNATPDSFSDGGE----HFADIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPN-SIQA-SEEEEIRRSIPLIK  299 (545)
T ss_dssp             EEEEEEECSCSSTTTTTT----TTTCHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTT-CCCC-CHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCCcCCCc----CcCCHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCC-CCCC-CHHHHHHHHHHHHH
Confidence            3345777777   45654    35 8899999999999999     9999999643 232 1222 333333333    2


Q ss_pred             hccC------CceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC-hHHHhhhcCCCH
Q 012949          191 DLEG------ARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSI  263 (452)
Q Consensus       191 ~~~~------~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~~~~~~~~s~  263 (452)
                      .+..      ..+..-+...+                        .+-+++|+++|++.|.=..... |           
T Consensus       300 ~i~~~~~~~~~~vpISIDT~~------------------------a~VaeaAl~aGadIINDVsg~~~d-----------  344 (545)
T 2bmb_A          300 AIRESTELPQDKVILSIDTYR------------------------SNVAKEAIKVGVDIINDISGGLFD-----------  344 (545)
T ss_dssp             HHHHCSSSCGGGEEEEEECCC------------------------HHHHHHHHHTTCCEEEETTTTSSC-----------
T ss_pred             HHHhhccccCCCCeEEEeCCc------------------------HHHHHHHHHcCCCEEEeCCCCcCC-----------
Confidence            2211      12222222111                        2467889999999886332211 1           


Q ss_pred             HHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCC--CC--CC-----------------------------H-----HH
Q 012949          264 EDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVE--GA--IP-----------------------------P-----SK  304 (452)
Q Consensus       264 e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~--~r--~d-----------------------------~-----e~  304 (452)
                             .++++.+++. |..+.  +++.-|.|..  .+  ++                             .     ++
T Consensus       345 -------~~m~~vva~~~~~~vV--lmH~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~  415 (545)
T 2bmb_A          345 -------SNMFAVIAENPEICYI--LSHTRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQE  415 (545)
T ss_dssp             -------TTHHHHHHTCTTSEEE--EECCCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHH
T ss_pred             -------hHHHHHHHHhCCCeEE--EECCCCCCCCccccccccccccccccchhccccccccccccccccchHHHHHHHH
Confidence                   1345667788 87765  6655444431  01  11                             1     34


Q ss_pred             HHHHHHHHHHCCcC--EEEEcCC-cCCC-cHHHHHHHHHHHHH
Q 012949          305 VAYVAKELHDMGCF--EISLGDT-IGVG-TPGTVVPMLEAVMA  343 (452)
Q Consensus       305 l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~li~~l~~  343 (452)
                      +.+.++.+.++|++  .|.| |- +|.. ++++-.++++.+..
T Consensus       416 l~~~i~~a~~~GI~~~~Iil-DPGiGF~Kt~~~nl~lL~~l~~  457 (545)
T 2bmb_A          416 IGERYIKAIDNGVKRWQILI-DPGLGFAKTWKQNLQIIRHIPI  457 (545)
T ss_dssp             HHHHHHHHHHTTCCGGGEEE-ECCTTSSCCHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHcCCCHHHEEE-eCCCCcccChHHHHHHHHHHHH
Confidence            45567778899986  5666 53 3332 35666667666654

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=90.70  E-value=1.7  Score=46.02  Aligned_cols=143  Identities=15%  Similarity=0.000  Sum_probs=88.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CC--CcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LS--IPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G--~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      +-++.+.+-|+..+-+....++.+....-+.+.++.++.+.+.++.+++ .|  +.++.-++..      -..+++...+
T Consensus       204 e~l~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~rlI~~~~------R~~~~e~a~e  277 (508)
T 3lgd_A          204 RSMQEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDH------RSKDVAVIAE  277 (508)
T ss_dssp             HHHHHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEEE------TTSCHHHHHH
T ss_pred             HHHHHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEEEec------CCCCHHHHHH
Confidence            4667777889988877643333332223357899999999999888775 44  5565433321      1235666555


Q ss_pred             HHHHHHHC------CcCEEEEcCC--cCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH---HHHHHHHHHcCCCEE
Q 012949          308 VAKELHDM------GCFEISLGDT--IGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS---LPNILISLQMGISTV  376 (452)
Q Consensus       308 ~a~~l~~~------Gad~I~L~DT--~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA---~ANaLaAl~aGa~~V  376 (452)
                      .++.+.++      ++-.|-|+..  .|. .|....+.+...+++-.+.++.+|+-.+.+.+   ..|...|+..|+++|
T Consensus       278 ~l~~a~~~~~~~~~~VvG~DLaG~E~~g~-p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~~~~~~i~~Al~Lga~RI  356 (508)
T 3lgd_A          278 SIRMAMGLRIKFPTVVAGFDLVGHEDTGH-SLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRI  356 (508)
T ss_dssp             HHHHHHHHHHHCTTTEEEEEEESCTTTSC-CTGGGHHHHTHHHHTTCCCCBCCEECCSSCCSSTTTTHHHHHHHTTCSSE
T ss_pred             HHHHHHHHHhhCCCceEEeccCCCCCCCC-CHHHHHHHHHHHHHHHcCCceeeecccccCCCCCcHHHHHHHHhcCCcee
Confidence            55554443      3445555432  232 35566666665433335668899998876544   458888888999987


Q ss_pred             eecc
Q 012949          377 DCSV  380 (452)
Q Consensus       377 D~Sv  380 (452)
                      +=.+
T Consensus       357 gHGv  360 (508)
T 3lgd_A          357 GHGF  360 (508)
T ss_dssp             EECT
T ss_pred             eeeE
Confidence            5433

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=90.68  E-value=16  Score=37.21  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=80.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhh-hc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCC------CC-
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKS-NI--NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------GA-  299 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~-~~--~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~------~r-  299 (452)
                      .++.++++|+..||+-+-+.+..... ..  +.   ..++.+..+++.||++|++|...+-+.  +..|-.      -. 
T Consensus        53 ~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~---~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~~  129 (399)
T 1ur4_A           53 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGN---NDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWAN  129 (399)
T ss_dssp             HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTC---CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGTT
T ss_pred             HHHHHHHCCCCEEEEeeecCCcccccCccCCCC---CCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCcccccc
Confidence            67778899999999855433210000 00  11   125667788899999999997554321  001100      00 


Q ss_pred             CCHH--------HHHHHHHHHHHCCc--CEEEEcC-C-cCC---CcHHHHHHH----HHHHHHhCCCccEEEEeCCCcCc
Q 012949          300 IPPS--------KVAYVAKELHDMGC--FEISLGD-T-IGV---GTPGTVVPM----LEAVMAVVPVEKLAVHLHDTYGQ  360 (452)
Q Consensus       300 ~d~e--------~l~~~a~~l~~~Ga--d~I~L~D-T-~G~---~~P~~v~~l----i~~l~~~~p~~~l~vH~Hnd~Gl  360 (452)
                      .+.+        +...+++.+.+.|+  +.|.+.. + .|.   ....++.++    ++++|+..|..+|-+|..+-...
T Consensus       130 ~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~~  209 (399)
T 1ur4_A          130 LNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPETS  209 (399)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTST
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcch
Confidence            1222        23345667777774  4564543 1 122   234554444    57788888988888988765443


Q ss_pred             HHHH-HHHHHH-cC--CCEEeecccCC
Q 012949          361 SLPN-ILISLQ-MG--ISTVDCSVAGL  383 (452)
Q Consensus       361 A~AN-aLaAl~-aG--a~~VD~Sv~Gl  383 (452)
                      +.-. -+.++. .|  .|+|-.+..+.
T Consensus       210 ~~~~~~~d~l~~~g~d~DvIG~syYp~  236 (399)
T 1ur4_A          210 GRYAWIAETLHRHHVDYDVFASSYYPF  236 (399)
T ss_dssp             THHHHHHHHHHHTTCCCSEEEEEECTT
T ss_pred             HHHHHHHHHHHHcCCCcCeEeEecCcc
Confidence            3211 113322 34  56776666643

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=90.68  E-value=4.6  Score=39.77  Aligned_cols=110  Identities=15%  Similarity=0.091  Sum_probs=68.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.++|++.|.+.... +                  .+.++.+|+.|+++...+           .++    +.++
T Consensus        79 ~~~~~a~~~g~d~V~~~~g~-p------------------~~~i~~l~~~g~~v~~~v-----------~~~----~~a~  124 (332)
T 2z6i_A           79 DIVDLVIEEGVKVVTTGAGN-P------------------SKYMERFHEAGIIVIPVV-----------PSV----ALAK  124 (332)
T ss_dssp             HHHHHHHHTTCSEEEECSSC-G------------------GGTHHHHHHTTCEEEEEE-----------SSH----HHHH
T ss_pred             HHHHHHHHCCCCEEEECCCC-h------------------HHHHHHHHHcCCeEEEEe-----------CCH----HHHH
Confidence            36788999999999876532 1                  124456667788775322           123    3456


Q ss_pred             HHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeec
Q 012949          311 ELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCS  379 (452)
Q Consensus       311 ~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~S  379 (452)
                      .+.++|+|.|.+-.  +-|...+....++++.+++.+. +||-.=    -|.. ..|+.+++.+||+.|...
T Consensus       125 ~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~-iPViaa----GGI~~~~~~~~al~~GAdgV~vG  191 (332)
T 2z6i_A          125 RMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAIS-IPVIAA----GGIADGEGAAAGFMLGAEAVQVG  191 (332)
T ss_dssp             HHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCS-SCEEEE----SSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcC-CCEEEE----CCCCCHHHHHHHHHcCCCEEEec
Confidence            67789999998832  1222111123367788877664 344432    3454 468888889999987754

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=90.54  E-value=0.94  Score=47.22  Aligned_cols=73  Identities=16%  Similarity=0.136  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      ...+.++.+.++|++.|.+.=+.|  .|....+.++.+++.+|+.++.+-    .++...-+..+.++||+.|.++..|
T Consensus       237 ~~~~~a~~l~~aGvd~v~i~~~~G--~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~~~  309 (494)
T 1vrd_A          237 ETMERVEKLVKAGVDVIVIDTAHG--HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGVGP  309 (494)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCC--SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             hHHHHHHHHHHhCCCEEEEEecCC--chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcCCC
Confidence            345678889999999999833333  677788999999999987777663    2455666788899999999996543

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A

Probab=90.52  E-value=1.2  Score=41.27  Aligned_cols=186  Identities=18%  Similarity=0.146  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ++...-.+.++.+.++|++ ||+... .+    .+....++.+..+...+ .+++..|-..      +.+........+.
T Consensus         7 ~p~~~l~~~l~~~~~~G~~-vEl~~~-~~----~~~~~~~~~~~~~~~~~-~~~~h~~~~~------~~l~~~~~~~r~~   73 (254)
T 3ayv_A            7 FPLSRAEEALPRLQALGLG-AEVYLD-PA----LLEEDALFQSLRRRFSG-KLSVHLPFWN------LDLLSPDPEVRGL   73 (254)
T ss_dssp             EEGGGHHHHHHHHHHHTCE-EEEECC-GG----GTTCHHHHHHHHHHCCS-CEEEECCCTT------CCTTCSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-EEEecc-cc----ccCcHHHHHHHHHHhCC-CeEEecCccC------CCCCCCCHHHHHH
Confidence            3444556778888999999 999432 11    12222233333333324 5655554221      0000000000000


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                      ......+.++.|.+.|++.|.+.................+...+.+.++.++|++.|+.+.  +...      ...+++.
T Consensus        74 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~------~~~~~~~  145 (254)
T 3ayv_A           74 TLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLL--LENS------HEPHPEA  145 (254)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEE--EECS------SCSSGGG
T ss_pred             HHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEE--EcCC------CCCCHHH
Confidence            0001234778888999999988654321100000011245566777788889999998654  3321      2236777


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH-HHHhCCCccEEEEeCCCcC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA-VMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~-l~~~~p~~~l~vH~Hnd~G  359 (452)
                      +.++++.+-  .--.+++ ||.=...-..  +-+.. +.+ ++.  ..+|.||..|
T Consensus       146 ~~~l~~~v~--~~vg~~~-D~~H~~~~g~--~~~~~~~~~-~~~--~~vHl~D~~~  193 (254)
T 3ayv_A          146 LRPVLEAHA--GELGFCF-DAAHARVFSR--TPDPGPWLA-LAP--EHLHLNDTDG  193 (254)
T ss_dssp             THHHHHHHT--TSSEEEE-EHHHHHHHSS--CCSSHHHHT-TCC--SEEEECBCCS
T ss_pred             HHHHHHhcC--cCEEEEE-EchhhHHhCC--CchhHHHHH-cCC--CEEEEeCCCC
Confidence            777777653  2224444 6522111100  01222 223 443  7899999875

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A

Probab=90.46  E-value=6.4  Score=39.42  Aligned_cols=135  Identities=13%  Similarity=0.006  Sum_probs=80.7

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hC--CCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VL--SIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~--G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      .+.++.+++.|+..+.++..  +.+.-...|.+.++.++.+.+.++.++ +.  |+.++.-+++.-    .  .+++...
T Consensus       118 ~~~l~e~~~~GV~y~E~r~d--p~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~gi~~~li~~~~r----~--~~~~~~~  189 (371)
T 2pgf_A          118 KHAVFNKYKEGVVLMEFRYS--PTFVAFKYNLDIELIHQAIVKGIKEVVELLDHKIHVALMCIGDT----G--HEAANIK  189 (371)
T ss_dssp             HHHHHHHHHHTEEEEEEEEC--HHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEE----S--STTCCHH
T ss_pred             HHHHHHHHHCCCEEEEEEEC--cccccccCCCCHHHHHHHHHHHHHHHHHHccCCCEEEEEEEecC----C--CCHHHHH
Confidence            35677888899998888763  322122457788899988888777655 46  887654344321    1  2223333


Q ss_pred             HHHHHHHH--CCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc-CcHHHHHHHHHHc-CCCEE
Q 012949          307 YVAKELHD--MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY-GQSLPNILISLQM-GISTV  376 (452)
Q Consensus       307 ~~a~~l~~--~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~-GlA~ANaLaAl~a-Ga~~V  376 (452)
                      +.++.+.+  .++..|-++..-..  |..+.+.++..++.  +.++.+|++.+. |-...+...|+.. |++++
T Consensus       190 ~~~~~a~~~~~~vvg~dl~g~e~~--~~~~~~~~~~A~~~--gl~~~~HagE~~~~~~~~~i~~al~~lg~~ri  259 (371)
T 2pgf_A          190 ASADFCLKHKADFVGFDHGGHEVD--LKEYKEIFDYVRES--GVPLSVHAGEDVTLPNLNTLYSAIQVLKVERI  259 (371)
T ss_dssp             HHHHHHHHTTTTEEEEEEEESCCC--GGGGHHHHHHHHHT--TCCBEEEESCCTTSSSSHHHHHHHHTSCCSEE
T ss_pred             HHHHHHHhCCCCEEEEecCCCccc--HHHHHHHHHHHHHc--CCcEEEeeCCCCCCCchHHHHHHHhccCCCEE
Confidence            33443333  22333333321111  77888888777663  457999999873 3211567788886 99876

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=90.45  E-value=4.9  Score=39.01  Aligned_cols=181  Identities=17%  Similarity=0.116  Sum_probs=108.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC---CCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFV---SPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~---s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.+.-+++++.+.++|.+.+-++.+-   ++..+-.+ . ++-++.+++. ....+++++--..                
T Consensus        50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~-g-~~gl~~l~~~~~~~Gl~~~te~~d----------------  111 (276)
T 1vs1_A           50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL-G-LEGLKLLRRAGDEAGLPVVTEVLD----------------  111 (276)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC-T-HHHHHHHHHHHHHHTCCEEEECCC----------------
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC-C-HHHHHHHHHHHHHcCCcEEEecCC----------------
Confidence            78999999999999999998887653   22111111 1 3334444432 2223344431111                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-C
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-I  300 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~  300 (452)
                              .+.++.+.+. ++.+.|....-.             ..    .+++++-+.|.+|.  |+.       +. .
T Consensus       112 --------~~~~~~l~~~-vd~~kIgs~~~~-------------n~----~ll~~~a~~~kPV~--lk~-------G~~~  156 (276)
T 1vs1_A          112 --------PRHVETVSRY-ADMLQIGARNMQ-------------NF----PLLREVGRSGKPVL--LKR-------GFGN  156 (276)
T ss_dssp             --------GGGHHHHHHH-CSEEEECGGGTT-------------CH----HHHHHHHHHTCCEE--EEC-------CTTC
T ss_pred             --------HHHHHHHHHh-CCeEEECccccc-------------CH----HHHHHHHccCCeEE--EcC-------CCCC
Confidence                    1367777777 898887643211             01    23344446688886  332       33 3


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC-Cc-CC--CcHHHHHHH-HHHHHHhCCCccEE-EEeC--CCcCcHHHHHHHHHHcC
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD-TI-GV--GTPGTVVPM-LEAVMAVVPVEKLA-VHLH--DTYGQSLPNILISLQMG  372 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D-T~-G~--~~P~~v~~l-i~~l~~~~p~~~l~-vH~H--nd~GlA~ANaLaAl~aG  372 (452)
                      +++.+...++.+...|.+.|.|+. -+ .+  ..++.+.-. +..+++.+.. +|. .=.|  ...-+...-+++|+.+|
T Consensus       157 t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~vdl~~i~~lk~~~~l-pVi~dssH~~g~~~~~~~~~~aAva~G  235 (276)
T 1vs1_A          157 TVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFTLDVAAVAVLKEATHL-PVIVDPSHPAGRRSLVPALAKAGLAAG  235 (276)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCBHHHHHHHHHHBSS-CEEECCHHHHCSGGGHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcchhCHHHHHHHHHHhCC-CEEEeCCCCCCccchHHHHHHHHHHcC
Confidence            789999999999999987777766 11 12  233444333 6777776532 453 3334  33334577788899999


Q ss_pred             CC--EEeecc
Q 012949          373 IS--TVDCSV  380 (452)
Q Consensus       373 a~--~VD~Sv  380 (452)
                      |+  +|+.=+
T Consensus       236 a~Gl~IE~H~  245 (276)
T 1vs1_A          236 ADGLIVEVHP  245 (276)
T ss_dssp             CSEEEEEBCS
T ss_pred             CCEEEEEecC
Confidence            99  888765

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=90.45  E-value=3.3  Score=40.41  Aligned_cols=157  Identities=15%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             HHHHHHHHHCCCCEEEEecCC------CCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFV------SPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~------s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .--++.++++||+.|-+|...      .|.-.|  -..++++...+.+. .++.+.++-.+.     +.+|...+.+.++
T Consensus        44 a~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~--vTldemi~h~~aV~r~~~~~~vvaD~p-----fgsy~~s~~~a~~  116 (281)
T 1oy0_A           44 YSTARIFDEAGIPVLLVGDSAANVVYGYDTTVP--ISIDELIPLVRGVVRGAPHALVVADLP-----FGSYEAGPTAALA  116 (281)
T ss_dssp             HHHHHHHHTTTCCEEEECTTHHHHTTCCSSSSS--CCGGGTHHHHHHHHHHCTTSEEEEECC-----TTSSTTCHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCC--CCHHHHHHHHHHHHhcCCCCeEEEECC-----CCcccCCHHHHHH
Confidence            345788899999999998421      122111  12345555554432 122222222222     1122222222211


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CCC
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CPV  296 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p~  296 (452)
                      .       ..+...++|++-|.+-...              +    +.+.|+.+.+.|++|.+.|-.+      +| .-.
T Consensus       117 n-------a~rl~~eaGa~aVklEdg~--------------e----~~~~I~al~~agIpV~gHiGLtPqsv~~~ggf~v  171 (281)
T 1oy0_A          117 A-------ATRFLKDGGAHAVKLEGGE--------------R----VAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRV  171 (281)
T ss_dssp             H-------HHHHHHTTCCSEEEEEBSG--------------G----GHHHHHHHHHHTCCEEEEEECCC-----------
T ss_pred             H-------HHHHHHHhCCeEEEECCcH--------------H----HHHHHHHHHHCCCCEEeeecCCcceecccCCeEE
Confidence            1       2334445999999998761              1    2345566677899887555432      00 001


Q ss_pred             CCCCC-HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC
Q 012949          297 EGAIP-PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       297 ~~r~d-~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      -+|++ .+.+.+-++++.++||+.|.+.=     .|.   ++.+.+.+.++.
T Consensus       172 ~grt~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~---~~a~~it~~l~i  215 (281)
T 1oy0_A          172 QGRGDAAEQTIADAIAVAEAGAFAVVMEM-----VPA---ELATQITGKLTI  215 (281)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTCSEEEEES-----CCH---HHHHHHHHHCSS
T ss_pred             EeCcHHHHHHHHHHHHHHHcCCcEEEEec-----CCH---HHHHHHHHhCCC
Confidence            12322 35666677888999999999953     353   355666676654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=90.40  E-value=2.3  Score=41.38  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=69.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .++.++-.++++.+++... .++|-+|. +++..-++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (291)
T 3tak_A           17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG   96 (291)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999   5688888899998888763 35676765 678888999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus        97 adavlv~  103 (291)
T 3tak_A           97 ADAALLV  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9987554

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=90.29  E-value=0.97  Score=43.89  Aligned_cols=12  Identities=0%  Similarity=-0.161  Sum_probs=5.8

Q ss_pred             HHHHHHhCCCcE
Q 012949          273 VAHAAKVLSIPV  284 (452)
Q Consensus       273 ~v~~Ak~~G~~V  284 (452)
                      +++.+.+.|+++
T Consensus        31 i~~~L~~~Gv~~   42 (295)
T 1ydn_A           31 LINRLSDCGYAR   42 (295)
T ss_dssp             HHHHHTTTTCSE
T ss_pred             HHHHHHHcCcCE
Confidence            344444555553

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=90.22  E-value=2.8  Score=41.05  Aligned_cols=220  Identities=14%  Similarity=0.128  Sum_probs=129.3

Q ss_pred             HHHHHHHCCCCEEEEecC-CC-CCcccc--cCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          153 LIRRLVSSGLPVVEATSF-VS-PKWVPQ--LADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       153 i~~~L~~~Gv~~IEvG~~-~s-~~~~p~--~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      -++.++++||+.|=+|.. ++ ....|.  .-+.++++..++.+. .+.+++++. ..      .+|+ .+.++.+    
T Consensus        27 sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD-~d------~Gyg-~~~~~~~----   94 (290)
T 2hjp_A           27 VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIAD-ID------TGFG-NAVNVHY----   94 (290)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEE-CT------TTTS-SHHHHHH----
T ss_pred             HHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEE-CC------CCCC-CHHHHHH----
Confidence            366778899999999952 11 022332  135678888888764 345554442 11      3465 3344333    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChH---HHh--hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEA---FSK--SNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~--~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                          .+.+..++|+.-|+|-....+-   |..  .+-=.+.++..++++.+++....-++.|.+---.     .......
T Consensus        95 ----~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda-----~~a~~g~  165 (290)
T 2hjp_A           95 ----VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEA-----LIAGLGQ  165 (290)
T ss_dssp             ----HHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECT-----TTTTCCH
T ss_pred             ----HHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehH-----hhccccH
Confidence                6677778999999999876421   111  1111356677877766555544445555432110     0011235


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CCEEeeccc
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-ISTVDCSVA  381 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~~VD~Sv~  381 (452)
                      +...+=++...++|||.|.+.=  ++-+++.+.++.+.+...+|   +-+-.-.-..+   ..-.--++| +++|-....
T Consensus       166 ~~ai~Ra~ay~eAGAd~i~~e~--~~~~~~~~~~i~~~~~~~vP---~i~n~~~~~~~---~~~eL~~lG~v~~v~~~~~  237 (290)
T 2hjp_A          166 QEAVRRGQAYEEAGADAILIHS--RQKTPDEILAFVKSWPGKVP---LVLVPTAYPQL---TEADIAALSKVGIVIYGNH  237 (290)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECC--CCSSSHHHHHHHHHCCCSSC---EEECGGGCTTS---CHHHHHTCTTEEEEEECSH
T ss_pred             HHHHHHHHHHHHcCCcEEEeCC--CCCCHHHHHHHHHHcCCCCC---EEEeccCCCCC---CHHHHHhcCCeeEEEechH
Confidence            7788888899999999999843  13456777666665543233   33322111222   223444689 998887777


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      .+        |+-+.++++++..++..|
T Consensus       238 ~~--------raa~~a~~~~~~~i~~~g  257 (290)
T 2hjp_A          238 AI--------RAAVGAVREVFARIRRDG  257 (290)
T ss_dssp             HH--------HHHHHHHHHHHHHHHHHT
T ss_pred             HH--------HHHHHHHHHHHHHHHHcC
Confidence            65        677888899888887643

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=90.21  E-value=4.3  Score=41.00  Aligned_cols=120  Identities=10%  Similarity=0.089  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC---------------CC---------------CCCCH--------
Q 012949          261 CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP---------------VE---------------GAIPP--------  302 (452)
Q Consensus       261 ~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p---------------~~---------------~r~d~--------  302 (452)
                      ...++.++..+++++.+++.|-++.+-|... |--               -+               ....|        
T Consensus        84 i~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI  162 (376)
T 1icp_A           84 IWTKEQVEAWKPIVDAVHAKGGIFFCQIWHV-GRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEI  162 (376)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHH
Confidence            3346677888888889999998887777652 100               00               00112        


Q ss_pred             ----HHHHHHHHHHHHCCcCEEEEc-------------------CCcCCCc---HHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          303 ----SKVAYVAKELHDMGCFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       303 ----e~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                          +.+++.|+.+.++|.|.|-|-                   |-.|...   +..+.++|+++++.++..+|.+-.+-
T Consensus       163 ~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~  242 (376)
T 1icp_A          163 PQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISP  242 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecc
Confidence                467778889999999988772                   4445433   33478889999999873378877663


Q ss_pred             C-------cCc----HHHHHHHHHHcCCCEEeeccc
Q 012949          357 T-------YGQ----SLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       357 d-------~Gl----A~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +       .+.    ++.-+-+.-++|+++|+.+..
T Consensus       243 ~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  278 (376)
T 1icp_A          243 FAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEP  278 (376)
T ss_dssp             TCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECC
T ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            2       123    223333334689999999754

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}

Probab=90.18  E-value=15  Score=37.36  Aligned_cols=167  Identities=9%  Similarity=0.055  Sum_probs=95.8

Q ss_pred             CCCHHHHHHHHHHHHH-CCCCEEEEecCCCCCcccccC-C--HHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccc
Q 012949          144 TVPTGVKVELIRRLVS-SGLPVVEATSFVSPKWVPQLA-D--ARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHA  219 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~-~Gv~~IEvG~~~s~~~~p~~~-D--~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~  219 (452)
                      .++.++..++++.+.+ .|+..|-++.. -    |-+. |  ..++++.++++++.+...+..+..      +.+.    
T Consensus       144 ~ls~eei~~~i~~i~~~~gi~~V~ltGG-E----Pll~~d~~L~~il~~l~~~~~v~~i~i~Tng~------~~~p----  208 (416)
T 2a5h_A          144 SMPMERIDKAIDYIRNTPQVRDVLLSGG-D----ALLVSDETLEYIIAKLREIPHVEIVRIGSRTP------VVLP----  208 (416)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEEEEES-C----TTSSCHHHHHHHHHHHHTSTTCCEEEEECSHH------HHCG----
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEEECC-C----CCCCCHHHHHHHHHHHHhcCCccEEEEEeccc------cccc----
Confidence            4789999999999988 79988777542 1    3232 3  355666666655443221222110      0000    


Q ss_pred             hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          220 SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       220 ~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                            ...+.+-++...+.  +.|.|.+..+..   ..+  +     +.+.++++.+++.|+.+.......-|-    -
T Consensus       209 ------~~it~e~l~~L~~~--~~v~Isl~~~~~---~ei--~-----~~v~~ai~~L~~aGi~v~i~~vll~Gv----N  266 (416)
T 2a5h_A          209 ------QRITPELVNMLKKY--HPVWLNTHFNHP---NEI--T-----EESTRACQLLADAGVPLGNQSVLLRGV----N  266 (416)
T ss_dssp             ------GGCCHHHHHHHGGG--CSEEEEECCCSG---GGC--C-----HHHHHHHHHHHHTTCCEEEEEECCTTT----T
T ss_pred             ------ccCCHHHHHHHHhc--CcEEEEEecCCH---HHH--h-----HHHHHHHHHHHHcCCEEEEEEEEECCC----C
Confidence                  00122345555555  667777655432   112  2     556677788899999876433221111    1


Q ss_pred             CCHHHHHHHHHHHHHCCcCE--EEEcCCc-CC----CcHHHHHHHHHHHHHhCCC
Q 012949          300 IPPSKVAYVAKELHDMGCFE--ISLGDTI-GV----GTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~--I~L~DT~-G~----~~P~~v~~li~~l~~~~p~  347 (452)
                      .+.+.+.++++.+.+.|++.  +.+.+.. |.    ..+....++++.+++.+++
T Consensus       267 d~~e~l~~l~~~l~~lgv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~~~~~G  321 (416)
T 2a5h_A          267 DCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSG  321 (416)
T ss_dssp             CSHHHHHHHHHHHHHTTEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCG
T ss_pred             CCHHHHHHHHHHHHHcCCceEEEeecCCCCCcccccCCcccHHHHHHHHHHHCCC
Confidence            34567889999999999874  4555642 32    2345667778877776543

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=90.08  E-value=5.3  Score=40.36  Aligned_cols=119  Identities=13%  Similarity=0.114  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC---------------CCC--------------------CCCCH----
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE--------------------GAIPP----  302 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~---------------p~~--------------------~r~d~----  302 (452)
                      ..++.++..+++++.+++.|-++.+-|... |-               |-+                    ....|    
T Consensus        79 ~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt  157 (377)
T 2r14_A           79 WTDAQEAGWKGVVEAVHAKGGRIALQLWHV-GRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALE  157 (377)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECC
T ss_pred             CCHHHHHHHHHHHHHHhhcCCeEEEEccCC-ccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCC
Confidence            345667778888888999998887767652 10               000                    00123    


Q ss_pred             --------HHHHHHHHHHHHCCcCEEEE-------------------cCCcCCCcH---HHHHHHHHHHHHhCCCccEEE
Q 012949          303 --------SKVAYVAKELHDMGCFEISL-------------------GDTIGVGTP---GTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       303 --------e~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~P---~~v~~li~~l~~~~p~~~l~v  352 (452)
                              +.+++.|+.+.++|.|.|-|                   .|-.|....   .-+.++|+++++.++..+|.+
T Consensus       158 ~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~v  237 (377)
T 2r14_A          158 TDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGI  237 (377)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEE
Confidence                    56677888889999998887                   255565433   346788999999886337777


Q ss_pred             EeCC--Cc-----CcHHH----HHHHHHHcCCCEEeeccc
Q 012949          353 HLHD--TY-----GQSLP----NILISLQMGISTVDCSVA  381 (452)
Q Consensus       353 H~Hn--d~-----GlA~A----NaLaAl~aGa~~VD~Sv~  381 (452)
                      -..-  .+     |....    -+.+.-++|+++|+.+..
T Consensus       238 rls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  277 (377)
T 2r14_A          238 RLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEP  277 (377)
T ss_dssp             EECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             EeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            6532  11     23222    334444799999998764

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=90.05  E-value=1.5  Score=44.49  Aligned_cols=69  Identities=14%  Similarity=0.089  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      ..+.++.+.++|++.|.| ||... .|..+.+.|+.+++.+|++++....    .....-+..++++|||.|.+.
T Consensus       109 ~~~~~~~lieaGvd~I~i-dta~G-~~~~~~~~I~~ik~~~p~v~Vi~G~----v~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          109 NEERVKALVEAGVDVLLI-DSSHG-HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             CHHHHHHHHHTTCSEEEE-ECSCT-TSHHHHHHHHHHHHHCTTCEEEEEE----ECSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHhCCCCEEEE-eCCCC-CCHHHHHHHHHHHHhcCCCceEeee----eCCHHHHHHHHHcCCCEEEEe
Confidence            345678889999999887 66543 4667888999999999877665531    123567788899999999983

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=90.03  E-value=3.7  Score=40.85  Aligned_cols=119  Identities=17%  Similarity=0.181  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEEEeeecC----------CCC------C----CCCH-------HHHHHHHHHHHHCC
Q 012949          264 EDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC----------PVE------G----AIPP-------SKVAYVAKELHDMG  316 (452)
Q Consensus       264 e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~----------p~~------~----r~d~-------e~l~~~a~~l~~~G  316 (452)
                      ++.++..+++++.+++.|-++.+-|.+. |-          |-.      .    ..+.       +.+.+.|+.+.++|
T Consensus        79 d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aG  157 (340)
T 3gr7_A           79 DDHIAGLRELVGLVKEHGAAIGIQLAHA-GRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAG  157 (340)
T ss_dssp             TTHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccC-CCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            4567888899999999999887777652 20          000      0    0122       24455677788899


Q ss_pred             cCEEEEc-------------------CCcCCCcH---HHHHHHHHHHHHhCCCccEEEEeCCC--------cCcHHHHHH
Q 012949          317 CFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDT--------YGQSLPNIL  366 (452)
Q Consensus       317 ad~I~L~-------------------DT~G~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd--------~GlA~ANaL  366 (452)
                      .|.|.|-                   |-.|...-   .-+.++|+++++.+ +.+|.+-..-+        ....+.-+.
T Consensus       158 fDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~~~~~~~~la~  236 (340)
T 3gr7_A          158 FDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGLTAKDYVPYAK  236 (340)
T ss_dssp             CSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSCCGGGHHHHHH
T ss_pred             CCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCCCHHHHHHHHH
Confidence            9977763                   44554322   33688999999988 55677755532        233444444


Q ss_pred             HHHHcCCCEEeecccCCC
Q 012949          367 ISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       367 aAl~aGa~~VD~Sv~GlG  384 (452)
                      ..-++|+++|+.+-.+..
T Consensus       237 ~L~~~Gvd~i~vs~g~~~  254 (340)
T 3gr7_A          237 RMKEQGVDLVDVSSGAIV  254 (340)
T ss_dssp             HHHHTTCCEEEEECCCSS
T ss_pred             HHHHcCCCEEEEecCCcc
Confidence            555799999999875543

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=90.02  E-value=1.1  Score=44.99  Aligned_cols=70  Identities=10%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             HHHHHHHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          307 YVAKELHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       307 ~~a~~l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      +.++.+.+.  |++.|.+-=+.|  .|..+.+.|+.+++.+|+++|.+..    .+....+..|+++|||.|+++..|
T Consensus       121 ~~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g~  192 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIGP  192 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCCC
Confidence            345556665  889877632333  5677888999999999776777653    445678899999999999997543

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=89.97  E-value=8.5  Score=36.42  Aligned_cols=142  Identities=20%  Similarity=0.184  Sum_probs=90.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -.+.|.+.|+.-|-+.-    .+            +..+    +..+..++.|    +.+.|+|. +..+.+.-+.-++.
T Consensus        34 lc~eA~~~~~~aVcV~p----~~------------v~~a----~~l~~~~v~v----~tVigFP~-G~~~~~~K~~E~~~   88 (231)
T 3ndo_A           34 LVDEAADLGVFAVCVSP----PL------------VSVA----AGVAPSGLAI----AAVAGFPS-GKHVPGIKATEAEL   88 (231)
T ss_dssp             HHHHHHHHTCSEEEECG----GG------------HHHH----HHHCCTTCEE----EEEESTTT-CCSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCcEEEECH----HH------------HHHH----HHhcCCCCeE----EEEecCCC-CCCcHHHHHHHHHH
Confidence            45677788988777642    11            1211    1223334444    34456775 45556666667788


Q ss_pred             HHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccE----EEEe----CCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          312 LHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKL----AVHL----HDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l----~vH~----Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      +.+.|||.|-+.=-+|.   ..-+.+.+-|+.+++..++.++    +-..    |++- .=...+..|.++|||+|=+|-
T Consensus        89 Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~e-ei~~a~~ia~~aGADfVKTST  167 (231)
T 3ndo_A           89 AVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEP-LLADVCRVARDAGADFVKTST  167 (231)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHH-HHHHHHHHHHHTTCSEEECCC
T ss_pred             HHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHH-HHHHHHHHHHHHCcCEEEcCC
Confidence            89999999998877887   5667788888999888754322    2111    1222 223455678899999998875


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                       |.+.       +|++.+|++-.+.+.
T Consensus       168 -Gf~~-------~~gAt~edv~lm~~~  186 (231)
T 3ndo_A          168 -GFHP-------SGGASVQAVEIMART  186 (231)
T ss_dssp             -SCCT-------TCSCCHHHHHHHHHH
T ss_pred             -CCCC-------CCCCCHHHHHHHHHH
Confidence             3331       356888888877764

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=89.96  E-value=2.5  Score=41.14  Aligned_cols=135  Identities=15%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             HHHHHHcCCCEEEEE-ecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIF-ASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~-~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ...+.++|++.|.+. .+++-.+-..- ...|.++.+..++.+.+.+   .++|.+-+      |...-.+++.+.+.++
T Consensus        29 A~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~pviaD~------d~Gyg~~~~~~~~~v~   99 (275)
T 2ze3_A           29 ARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV---AIPVNADI------EAGYGHAPEDVRRTVE   99 (275)
T ss_dssp             HHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC---SSCEEEEC------TTCSSSSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc---CCCEEeec------CCCCCCCHHHHHHHHH
Confidence            344556899988876 34432111111 1457888888876666554   35665322      3332236889999999


Q ss_pred             HHHHCCcCEEEEcCCcC-----CCcHHHHHHHHHHHHHhCC--CccEEEEeCCCc-------------CcHHHHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIG-----VGTPGTVVPMLEAVMAVVP--VEKLAVHLHDTY-------------GQSLPNILISLQ  370 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G-----~~~P~~v~~li~~l~~~~p--~~~l~vH~Hnd~-------------GlA~ANaLaAl~  370 (452)
                      .+.++|+..|.|-|..+     +..++++.+.|+++++...  ++++-+-.-.|-             --++.-+.+-.+
T Consensus       100 ~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~e  179 (275)
T 2ze3_A          100 HFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYAD  179 (275)
T ss_dssp             HHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHH
Confidence            99999999999999974     5566778888888887621  223444444332             235566667778


Q ss_pred             cCCCEE
Q 012949          371 MGISTV  376 (452)
Q Consensus       371 aGa~~V  376 (452)
                      |||+.|
T Consensus       180 AGAd~i  185 (275)
T 2ze3_A          180 AGADGI  185 (275)
T ss_dssp             TTCSEE
T ss_pred             CCCCEE
Confidence            999965

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=89.92  E-value=16  Score=36.78  Aligned_cols=173  Identities=18%  Similarity=0.153  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .-.+++.++.++|.-    |....      ....+++.+.+++....  .....+.+             .        .
T Consensus        54 te~~lA~A~a~~Gg~----gvi~~------~~s~ee~~~~i~~~~~~--~~~~~g~~-------------~--------~  100 (361)
T 3r2g_A           54 TESNMANFMHSKGAM----GALHR------FMTIEENIQEFKKCKGP--VFVSVGCT-------------E--------N  100 (361)
T ss_dssp             CSHHHHHHHHHTTCE----EBCCS------CSCHHHHHHHHHTCCSC--CBEEECSS-------------H--------H
T ss_pred             hHHHHHHHHHHcCCC----EEEeC------CCCHHHHHHHHhhcceE--EEEEcCCC-------------H--------H
Confidence            337888999999852    22111      13467777777654321  11111111             0        0


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEE-EEEeeecCCCCCCCCHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRG-YVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~-~l~~~~g~p~~~r~d~e~l  305 (452)
                      ..+.+++++++|++.|.+-.+.-         .+     +.+.+.++.+|+.  ++.|.+ ++.           ++   
T Consensus       101 ~~e~~~~a~~aGvdvI~id~a~G---------~~-----~~~~e~I~~ir~~~~~~~Vi~G~V~-----------T~---  152 (361)
T 3r2g_A          101 ELQRAEALRDAGADFFCVDVAHA---------HA-----KYVGKTLKSLRQLLGSRCIMAGNVA-----------TY---  152 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEECSCC---------SS-----HHHHHHHHHHHHHHTTCEEEEEEEC-----------SH---
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCC---------Cc-----HhHHHHHHHHHHhcCCCeEEEcCcC-----------CH---
Confidence            12467889999999777643321         11     1223556667765  666653 222           23   


Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHH-----HHHHHHHHHhCCCc-cEEEEeCCCcCcH-HHHHHHHHHcCCCEEe-
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTV-----VPMLEAVMAVVPVE-KLAVHLHDTYGQS-LPNILISLQMGISTVD-  377 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v-----~~li~~l~~~~p~~-~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD-  377 (452)
                       +.++.+.++|+|.|.+.=.-|.....+.     ...+..+++..... +|-    -|=|.. -..+..|+.+||+.|- 
T Consensus       153 -e~A~~a~~aGaD~I~Vg~g~G~~~~tr~~~g~g~p~l~aI~~~~~~~~PVI----AdGGI~~~~di~kALa~GAd~V~i  227 (361)
T 3r2g_A          153 -AGADYLASCGADIIKAGIGGGSVCSTRIKTGFGVPMLTCIQDCSRADRSIV----ADGGIKTSGDIVKALAFGADFVMI  227 (361)
T ss_dssp             -HHHHHHHHTTCSEEEECCSSSSCHHHHHHHCCCCCHHHHHHHHTTSSSEEE----EESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             -HHHHHHHHcCCCEEEEcCCCCcCccccccCCccHHHHHHHHHHHHhCCCEE----EECCCCCHHHHHHHHHcCCCEEEE
Confidence             3477888999999998322121110000     01233333332211 222    234543 4678888999999654 


Q ss_pred             -ecccCCCCCC
Q 012949          378 -CSVAGLGGCP  387 (452)
Q Consensus       378 -~Sv~GlGecP  387 (452)
                       ..+.|-=|||
T Consensus       228 Gr~f~~t~Esp  238 (361)
T 3r2g_A          228 GGMLAGSAPTP  238 (361)
T ss_dssp             SGGGTTBTTSS
T ss_pred             ChHHhCCccCC
Confidence             4566666665

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=89.91  E-value=1.5  Score=43.17  Aligned_cols=81  Identities=11%  Similarity=0.153  Sum_probs=71.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEe-CCCcCcHHHHHHHHHHcCC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~-Hnd~GlA~ANaLaAl~aGa  373 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+.+..+.++|-++. +++..-++..+..|-++||
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga  103 (313)
T 3dz1_A           24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA  103 (313)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999994   78899999999998887556777766 6888899999999999999


Q ss_pred             CEEee
Q 012949          374 STVDC  378 (452)
Q Consensus       374 ~~VD~  378 (452)
                      +.+=.
T Consensus       104 davlv  108 (313)
T 3dz1_A          104 AGVMI  108 (313)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            98855

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=89.91  E-value=1.4  Score=42.99  Aligned_cols=82  Identities=13%  Similarity=0.029  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .++|-+|. +++..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  102 (297)
T 3flu_A           23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG  102 (297)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999   5688888899998888763 35666665 678888999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus       103 adavlv~  109 (297)
T 3flu_A          103 ADYTLSV  109 (297)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977654

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=89.84  E-value=1.5  Score=41.30  Aligned_cols=243  Identities=10%  Similarity=0.041  Sum_probs=117.5

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCccccc--CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQL--ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~--~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+.++.+.++|++.||+..+..+ +++..  .+.+++.+.+++ .++++.++.+....-      ........++    .
T Consensus        18 ~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~------~~~~~~~~~~----~   85 (286)
T 3dx5_A           18 TDIVQFAYENGFEGIELWGTHAQ-NLYMQEYETTERELNCLKD-KTLEITMISDYLDIS------LSADFEKTIE----K   85 (286)
T ss_dssp             HHHHHHHHHTTCCEEEEEHHHHH-HHHHHCHHHHHHHHHHTGG-GTCCEEEEECCCCCS------TTSCHHHHHH----H
T ss_pred             HHHHHHHHHhCCCEEEEcccccc-cccccCHHHHHHHHHHHHH-cCCeEEEEecCCCCC------CchhHHHHHH----H
Confidence            35677778899999999532100 01101  112222233322 466666665432100      0000001111    1


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ..+.++.|.+.|++.|.++.......  .......+...+.+.++.++|++.|+.+.  +...   +...-.+++.+.++
T Consensus        86 ~~~~i~~A~~lG~~~v~~~~g~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~---~~~~~~~~~~~~~l  158 (286)
T 3dx5_A           86 CEQLAILANWFKTNKIRTFAGQKGSA--DFSQQERQEYVNRIRMICELFAQHNMYVL--LETH---PNTLTDTLPSTLEL  158 (286)
T ss_dssp             HHHHHHHHHHHTCCEEEECSCSSCGG--GSCHHHHHHHHHHHHHHHHHHHHTTCEEE--EECC---TTSTTSSHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEcCCCCCcc--cCcHHHHHHHHHHHHHHHHHHHHhCCEEE--EecC---CCcCcCCHHHHHHH
Confidence            23477888899999999875432110  00001235566777788899999998754  3321   22222456777777


Q ss_pred             HHHHHHCCcCEE-EEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH---HHH-HcCCCEEeecccC
Q 012949          309 AKELHDMGCFEI-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL---ISL-QMGISTVDCSVAG  382 (452)
Q Consensus       309 a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL---aAl-~aGa~~VD~Sv~G  382 (452)
                      ++.+   +.+.+ ..-|+.=.... ....+.++.+..    --..+|++|..+-.....+   ..+ ..|...   .-..
T Consensus       159 ~~~~---~~~~vg~~~D~~h~~~~g~d~~~~l~~~~~----~i~~vHl~D~~~~~~~~~~~~~~~~~~~g~~~---~~~~  228 (286)
T 3dx5_A          159 LGEV---DHPNLKINLDFLHIWESGADPVDSFQQLRP----WIQHYHFKNISSADYLHVFEPNNVYAAAGNRT---GMVP  228 (286)
T ss_dssp             HHHH---CCTTEEEEEEHHHHHHTTCCHHHHHHHHGG----GEEEEEECEESCGGGGGGGSHHHHHSTTCCCT---TEEC
T ss_pred             HHhc---CCCCeEEEeccccHhhcCCCHHHHHHHHHh----HheEEEecCCcccccccccCccccccccCcce---eeec
Confidence            6655   32222 22255322111 112333443332    2367999998774210000   000 012110   0112


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcC-C---CCC-CCC-hhhHHHHHHHHHHHh
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGL-G---VET-NVD-LRKLMLAGDFINKHL  430 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~-G---i~t-~iD-l~~L~~la~~v~~~~  430 (452)
                      +|        .|..+...++..|+.. |   ++. +-| ++.+.+-.+++.+..
T Consensus       229 ~G--------~G~id~~~i~~~L~~~~g~~~lE~~~~d~~~~~~~s~~~Lr~~~  274 (286)
T 3dx5_A          229 LF--------EGIVNYDEIIQEVRDTDHFASLEWFGHNAKDILKAEMKVLTNRN  274 (286)
T ss_dssp             GG--------GSSSCHHHHHHHHTTSSCEEEECCCSSCHHHHHHHHHHHHHHCC
T ss_pred             cC--------CCcCCHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            22        5789999999999863 2   221 112 345666666666554

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=89.83  E-value=3.3  Score=41.02  Aligned_cols=118  Identities=15%  Similarity=0.202  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC----------CCC-----CCCCH------------HHHHHHHHHHHHC
Q 012949          263 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC----------PVE-----GAIPP------------SKVAYVAKELHDM  315 (452)
Q Consensus       263 ~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~----------p~~-----~r~d~------------e~l~~~a~~l~~~  315 (452)
                      .++.++..+++++.+++.|-++.+-|... |-          |-.     ....|            +.+.+.++.+.++
T Consensus        78 ~d~~~~~~~~~~~~vh~~g~~i~~QL~h~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~a  156 (338)
T 1z41_A           78 SDEHIEGFAKLTEQVKEQGSKIGIQLAHA-GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEA  156 (338)
T ss_dssp             STHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEecCC-CcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence            34556777788888899998877667642 10          000     00112            4567778888999


Q ss_pred             CcCEEEEc-------------------CCcCCCc---HHHHHHHHHHHHHhCCCccEEEEeCCC----cCc----HHHHH
Q 012949          316 GCFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDT----YGQ----SLPNI  365 (452)
Q Consensus       316 Gad~I~L~-------------------DT~G~~~---P~~v~~li~~l~~~~p~~~l~vH~Hnd----~Gl----A~ANa  365 (452)
                      |.|.|.|-                   |-.|...   +..+.++++++++.+ +.+|.+-.--+    -|.    ++.-+
T Consensus       157 GfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~~g~~~~~~~~~a  235 (338)
T 1z41_A          157 GFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTDKGLDIADHIGFA  235 (338)
T ss_dssp             TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCSTTSCCHHHHHHHH
T ss_pred             CCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCCCCCCHHHHHHHH
Confidence            99988763                   2333322   345789999999988 55677764211    133    23333


Q ss_pred             HHHHHcCCCEEeecccC
Q 012949          366 LISLQMGISTVDCSVAG  382 (452)
Q Consensus       366 LaAl~aGa~~VD~Sv~G  382 (452)
                      ...-++|+++|+.+-..
T Consensus       236 ~~l~~~Gvd~i~v~~~~  252 (338)
T 1z41_A          236 KWMKEQGVDLIDCSSGA  252 (338)
T ss_dssp             HHHHHTTCCEEEEECCC
T ss_pred             HHHHHcCCCEEEEecCc
Confidence            44457999999997643

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=89.83  E-value=7.4  Score=39.64  Aligned_cols=143  Identities=13%  Similarity=0.055  Sum_probs=88.1

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C-CcEEEEEEeeecCC-CC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL-S-IPVRGYVSCVVGCP-VE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~-G-~~V~~~l~~~~g~p-~~  297 (452)
                      +..++|.++|.|.|.|-.+-        |+..  ....+|-|.++=.+.+.++++.+|+. | ..|.+-|+..-... ..
T Consensus       175 ~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~  254 (402)
T 2hsa_B          175 RSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAM  254 (402)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCC
T ss_pred             HHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCC
Confidence            35567778999999987641        3332  22346778887778888888888764 4 25554454310000 01


Q ss_pred             CCCCHHHHHHHHHHHHHCC------cCEEEEcCCc--C-CCc-------HHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          298 GAIPPSKVAYVAKELHDMG------CFEISLGDTI--G-VGT-------PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~G------ad~I~L~DT~--G-~~~-------P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      ...+.+...++++.+.++|      ++.|.+..-.  + ...       +..-.++++.+++.++. +|..=.  .+  -
T Consensus       255 ~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~i-Pvi~~G--~i--~  329 (402)
T 2hsa_B          255 DSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQG-TFICSG--GY--T  329 (402)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSS-CEEEES--SC--C
T ss_pred             CCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCC-CEEEeC--CC--C
Confidence            2234577889999999999      9988884311  0 001       21235678888988864 443321  22  2


Q ss_pred             HHHHHHHHHcC-CCEEee
Q 012949          362 LPNILISLQMG-ISTVDC  378 (452)
Q Consensus       362 ~ANaLaAl~aG-a~~VD~  378 (452)
                      ...+..+++.| ||.|-.
T Consensus       330 ~~~a~~~l~~g~aD~V~i  347 (402)
T 2hsa_B          330 RELGIEAVAQGDADLVSY  347 (402)
T ss_dssp             HHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHHCCCCceeee
Confidence            56778889988 887654

>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*

Probab=89.82  E-value=1.9  Score=43.37  Aligned_cols=123  Identities=10%  Similarity=0.017  Sum_probs=60.4

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--CCCCCHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--EGAIPPS  303 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--~~r~d~e  303 (452)
                      ++.++.|.+.|++.|.+.......  ....+.+    .+...+.+.++.++|++.|+.|+..|...-..|.  ..-.+.+
T Consensus       119 ~~~i~~A~~LGa~~vv~~~G~~g~--~~~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~~~~~~~~~~~~~t~~  196 (393)
T 1xim_A          119 LRQMDLGAELGAKTLVLWGGREGA--EYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPTAG  196 (393)
T ss_dssp             HHHHHHHHHHTCCEEEEECTTSEE--SSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCSSSSSSEESSCSHH
T ss_pred             HHHHHHHHHhCCCEEEECCCCCCC--cCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCCCCCCcCCCHH
Confidence            357788888999999876541100  0001123    3455666667788898884334444553210010  0112444


Q ss_pred             HHHHHHHHHHHCCcCE-E-EEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          304 KVAYVAKELHDMGCFE-I-SLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~-I-~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                      .+.+++   .+.+.+. + ..-|+.=...+ ..+.+.++.+... +- ...+|++|..|
T Consensus       197 ~~~~ll---~~v~~~~~vgl~lD~gH~~~~g~d~~~~l~~~~~~-~~-i~~vHl~D~~~  250 (393)
T 1xim_A          197 HAIAFV---QELERPELFGINPETGHEQMSNLNFTQGIAQALWH-KK-LFHIDLNGQHG  250 (393)
T ss_dssp             HHHHHH---TTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHH-TC-BCCCEECBCCS
T ss_pred             HHHHHH---HHhCCccceEEEEccCCccccCCCHHHHHHHhhhc-CC-EEEEEeCCCCC
Confidence            444444   4455433 3 33476322121 2234445554411 22 35689988743

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=89.79  E-value=3.7  Score=39.64  Aligned_cols=135  Identities=12%  Similarity=0.047  Sum_probs=83.3

Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC--Ccc----EEEEeCCCc
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP--VEK----LAVHLHDTY  358 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p--~~~----l~vH~Hnd~  358 (452)
                      |+.+.|+|.. ..+.+.-+.-++.+.+.||+.|-+.=-+|   ...-..+.+-|+.+++..+  +.+    |+...=+|.
T Consensus        71 v~tVigFP~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~  149 (260)
T 1p1x_A           71 IATVTNFPHG-NDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDE  149 (260)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSH
T ss_pred             EEEEeCCCCC-CCcHHHHHHHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcH
Confidence            3445667754 45666666677888889999998877777   4445677777888877542  122    222222343


Q ss_pred             CcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc-----CCCCC------CCC-hhhHHHHHHHH
Q 012949          359 GQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG-----LGVET------NVD-LRKLMLAGDFI  426 (452)
Q Consensus       359 GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~-----~Gi~t------~iD-l~~L~~la~~v  426 (452)
                      ..=...+..|+++|||+|=+|- |.        .+|++..|++..+.+.     .|-..      ||. ++...+..+.-
T Consensus       150 e~i~~a~~ia~eaGADfVKTST-Gf--------~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~ag  220 (260)
T 1p1x_A          150 ALIRKASEISIKAGADFIKTST-GK--------VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIA  220 (260)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCC-SC--------SSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhh
Confidence            3223567788999999999885 22        2367888977766654     22222      233 44555555555


Q ss_pred             HHHhCC
Q 012949          427 NKHLGR  432 (452)
Q Consensus       427 ~~~~g~  432 (452)
                      .+.+|.
T Consensus       221 a~~lG~  226 (260)
T 1p1x_A          221 DELFGA  226 (260)
T ss_dssp             HHHHCT
T ss_pred             hhhccc
Confidence            555554

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=89.71  E-value=4.4  Score=39.15  Aligned_cols=149  Identities=12%  Similarity=0.124  Sum_probs=84.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHh------h-----hcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSK------S-----NINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~------~-----~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~  297 (452)
                      +.++.+.++|+|.|.+-++-||....      .     +.|.+.++.+    +.++..|+.  .+++.  ++.       
T Consensus        36 ~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~----~~v~~ir~~~~~~Piv--lm~-------  102 (267)
T 3vnd_A           36 KIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCF----DIITKVRAQHPDMPIG--LLL-------  102 (267)
T ss_dssp             HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH----HHHHHHHHHCTTCCEE--EEE-------
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE--EEe-------
Confidence            46777888999999999888773221      1     1344444444    455666654  44543  331       


Q ss_pred             CCCCHHH---HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          298 GAIPPSK---VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       298 ~r~d~e~---l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                       .++|-+   +.++++.+.++|+|.+.++|-    .|++..++++.+++. .. .+.+=.=.+.-.  .-.....+.+-.
T Consensus       103 -Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl----p~ee~~~~~~~~~~~-gl-~~i~liaP~t~~--eri~~i~~~~~g  173 (267)
T 3vnd_A          103 -YANLVFANGIDEFYTKAQAAGVDSVLIADV----PVEESAPFSKAAKAH-GI-APIFIAPPNADA--DTLKMVSEQGEG  173 (267)
T ss_dssp             -CHHHHHHHCHHHHHHHHHHHTCCEEEETTS----CGGGCHHHHHHHHHT-TC-EEECEECTTCCH--HHHHHHHHHCCS
T ss_pred             -cCcHHHHhhHHHHHHHHHHcCCCEEEeCCC----CHhhHHHHHHHHHHc-CC-eEEEEECCCCCH--HHHHHHHHhCCC
Confidence             112311   356888889999999999994    677888888888774 22 222222222222  233333344444


Q ss_pred             EEee-cccC-CCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          375 TVDC-SVAG-LGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       375 ~VD~-Sv~G-lGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      .|-. |+.| -|.      +.+. ..+.+++..++.
T Consensus       174 fvY~vS~~GvTG~------~~~~~~~~~~~v~~vr~  203 (267)
T 3vnd_A          174 YTYLLSRAGVTGT------ESKAGEPIENILTQLAE  203 (267)
T ss_dssp             CEEESCCCCCC--------------CHHHHHHHHHT
T ss_pred             cEEEEecCCCCCC------ccCCcHHHHHHHHHHHH
Confidence            5655 6666 455      5443 347788888776

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=89.69  E-value=5.2  Score=43.02  Aligned_cols=142  Identities=15%  Similarity=0.095  Sum_probs=89.2

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHH--HhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAF--SKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~--~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~  297 (452)
                      +..+.|.++|.|.|.|-.+-        |+..  ....+|-|.++-.+.+.++++.+|+.   .+.+.+-|+..- . ..
T Consensus       145 ~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~-~-~~  222 (671)
T 1ps9_A          145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD-L-VE  222 (671)
T ss_dssp             HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC-C-ST
T ss_pred             HHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccc-c-CC
Confidence            35567788999999986532        2221  12235677887788888888888874   345544454321 0 12


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEc----CC----cCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLG----DT----IGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILI  367 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~----DT----~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLa  367 (452)
                      +..+.+...++++.+.++|+|.|.+.    +.    .....| ....++++.+++.+.. +|..=    -|. -..++..
T Consensus       223 ~g~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-Pvi~~----Ggi~~~~~a~~  297 (671)
T 1ps9_A          223 DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSL-PLVTT----NRINDPQVADD  297 (671)
T ss_dssp             TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSS-CEEEC----SSCCSHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcCc-eEEEe----CCCCCHHHHHH
Confidence            34578889999999999999999873    11    000111 2234677888887643 45431    233 4578888


Q ss_pred             HHHcC-CCEEeec
Q 012949          368 SLQMG-ISTVDCS  379 (452)
Q Consensus       368 Al~aG-a~~VD~S  379 (452)
                      +++.| ||.|-..
T Consensus       298 ~l~~g~aD~V~~g  310 (671)
T 1ps9_A          298 ILSRGDADMVSMA  310 (671)
T ss_dssp             HHHTTSCSEEEES
T ss_pred             HHHcCCCCEEEeC
Confidence            99998 8887543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=89.66  E-value=5.5  Score=38.55  Aligned_cols=104  Identities=17%  Similarity=0.282  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-------------------CC
Q 012949          269 RYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------------GV  328 (452)
Q Consensus       269 ~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------------------G~  328 (452)
                      ++.+..+.+|+.|-+ ...||+       ++--+.+...++++.+.+.|||.|.|.=-.                   ..
T Consensus         6 ri~~~f~~~~~~~~~ali~yi~-------aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G   78 (271)
T 3nav_A            6 RYQALFQRLSAAQQGAFVPFVT-------IGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAK   78 (271)
T ss_dssp             HHHHHHHHHHHTTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe-------CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            345666777777755 345554       233467889999999999999977765221                   12


Q ss_pred             CcHHHHHHHHHHHHHhCCCccEEEEeCCC--cCcHHHH-HHHHHHcCCCEEeec
Q 012949          329 GTPGTVVPMLEAVMAVVPVEKLAVHLHDT--YGQSLPN-ILISLQMGISTVDCS  379 (452)
Q Consensus       329 ~~P~~v~~li~~l~~~~p~~~l~vH~Hnd--~GlA~AN-aLaAl~aGa~~VD~S  379 (452)
                      .+..++-++++.+|+..+.+||.+-..-+  +..++.+ +..+.++|++.+=..
T Consensus        79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIip  132 (271)
T 3nav_A           79 TTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIA  132 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEET
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEEC
Confidence            34456778999999886666777765433  3333443 555668999976554

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}

Probab=89.66  E-value=15  Score=37.11  Aligned_cols=141  Identities=12%  Similarity=0.032  Sum_probs=93.6

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK-VLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak-~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      .+-++.+.+-|+..+-+...  +.+....-|.+.+++++.+.+.++.++ +.|+.++.-++..      -..+++...++
T Consensus        99 ~e~~ed~a~dgV~Y~Eirf~--P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~------R~~~~e~a~~~  170 (380)
T 4gxw_A           99 YEYLEDAAAHNVRHAEFFWN--PTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSID------REQDPDEAVAI  170 (380)
T ss_dssp             HHHHHHHHTTTEEEEEEEEC--HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE------TTSCHHHHHHH
T ss_pred             HHHHHHHHHCCCeEEEEEcC--HHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeec------CCCCHHHHHHH
Confidence            34667777889888887764  333222357899999999888877665 5798887544431      12467777777


Q ss_pred             HHHHHHC---CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHH-cCCCEEeeccc
Q 012949          309 AKELHDM---GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQ-MGISTVDCSVA  381 (452)
Q Consensus       309 a~~l~~~---Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~-aGa~~VD~Sv~  381 (452)
                      ++.+.++   |+-.|-|+-.=-...|....+.++..++.  +.++.+|+=..-| ...|...|++ .|+++|+=.+.
T Consensus       171 ~~~a~~~~~~~VvG~dL~g~E~~~p~~~f~~~f~~ar~~--Gl~~t~HAGE~~~-p~~~i~~al~~lga~RIgHG~~  244 (380)
T 4gxw_A          171 VDWMKANRADEVAGIGIDYRENDRPPELFWKAYRDARAA--GFRTTAHAGEFGM-PWRNVETAVDLLHVDRVDHGYT  244 (380)
T ss_dssp             HHHHHHTCCTTBCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESCTTC-CHHHHHHHHHTSCCSEEEECGG
T ss_pred             HHHHHHhCCCCEEEEeecCCCCCCCHHHHHHHHHHHHHc--CCCeeeeccccCC-chHHHHHHHHHcCCccccccee
Confidence            7776665   34455554322234567777888877763  4688999976433 3467888886 79999975444

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=89.64  E-value=1  Score=44.77  Aligned_cols=79  Identities=15%  Similarity=0.181  Sum_probs=52.0

Q ss_pred             CCCC-CCHHHHHHHHHHHHHCCcCEEEEcC-C----cCCCcHHHHHHH---HHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          296 VEGA-IPPSKVAYVAKELHDMGCFEISLGD-T----IGVGTPGTVVPM---LEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       296 ~~~r-~d~e~l~~~a~~l~~~Gad~I~L~D-T----~G~~~P~~v~~l---i~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                      |.++ .+.+.+.+.++++.+.|||.|-+.= +    ..+...+++.++   |+.+++++|+++|.+   |++--.  -+.
T Consensus        57 dgg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI---DT~~~~--Vae  131 (318)
T 2vp8_A           57 DKGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV---DTWRAQ--VAK  131 (318)
T ss_dssp             -------CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE---ECSCHH--HHH
T ss_pred             CCCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE---eCCCHH--HHH
Confidence            3444 3678899999999999999998872 2    223334555444   777788887778888   555544  456


Q ss_pred             HHHHcCCCEEeec
Q 012949          367 ISLQMGISTVDCS  379 (452)
Q Consensus       367 aAl~aGa~~VD~S  379 (452)
                      +|+++|+++|+-.
T Consensus       132 aAl~aGa~iINDV  144 (318)
T 2vp8_A          132 AACAAGADLINDT  144 (318)
T ss_dssp             HHHHHTCCEEEET
T ss_pred             HHHHhCCCEEEEC
Confidence            8889999998643

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=89.61  E-value=1.7  Score=43.26  Aligned_cols=117  Identities=16%  Similarity=0.202  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      ++++.+.|++.|+-|-+     |.     -.+.+.+..+.+.+.+.+.. +|.+.- +..++....+..++....+.++.
T Consensus         6 ~~~ll~~A~~~~yAV~A-----fN-----v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   75 (323)
T 2isw_A            6 LRQMLGEARKHKYGVGA-----FN-----VNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPD   75 (323)
T ss_dssp             HHHHHHHHHHTTCCEEE-----EE-----CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCC
Confidence            35777999999988742     21     23578888999999999876 444432 22233346667888888887566


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +|+.+|.  |.|........|+++|.+  ++|+|-..+-+         | .-|.+++.+.+.
T Consensus        76 VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~  127 (323)
T 2isw_A           76 IPICIHL--DHGDTLESVKMAIDLGFSSVMIDASHHPFDE---------NVRITKEVVAYAHA  127 (323)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHT
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            6777766  556667889999999998  77999776655         4 445666666654

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=89.29  E-value=10  Score=34.90  Aligned_cols=124  Identities=15%  Similarity=0.116  Sum_probs=74.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCC--hHHHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASAS--EAFSKS--NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~S--d~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      +.++.+.++|.+.|-++....  ..|...  ....+.    +.+.++.+.+++.|+++.. +.. +   .  ....+.+.
T Consensus        26 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~-~---~--~~~~~~~~   94 (262)
T 3p6l_A           26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDA----QTQKEIKELAASKGIKIVG-TGV-Y---V--AEKSSDWE   94 (262)
T ss_dssp             HHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCH----HHHHHHHHHHHHTTCEEEE-EEE-E---C--CSSTTHHH
T ss_pred             HHHHHHHHcCCCEEeecCCcccccccccccccccCCH----HHHHHHHHHHHHcCCeEEE-Eec-c---C--CccHHHHH
Confidence            478899999999999975311  000000  011222    2345666788899998753 221 1   1  12457888


Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc--HHHHHHHHHHcC
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ--SLPNILISLQMG  372 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl--A~ANaLaAl~aG  372 (452)
                      +.++.+.++|++.|.+.-  |   ++...++.+..++ .+ +.|.+|.|...-.  -....+..++.+
T Consensus        95 ~~i~~A~~lGa~~v~~~~--~---~~~~~~l~~~a~~-~g-v~l~~En~~~~~~~~~~~~~~~ll~~~  155 (262)
T 3p6l_A           95 KMFKFAKAMDLEFITCEP--A---LSDWDLVEKLSKQ-YN-IKISVHNHPQPSDYWKPENLLKAISGR  155 (262)
T ss_dssp             HHHHHHHHTTCSEEEECC--C---GGGHHHHHHHHHH-HT-CEEEEECCSSSSSSSSHHHHHHHHTTS
T ss_pred             HHHHHHHHcCCCEEEecC--C---HHHHHHHHHHHHH-hC-CEEEEEeCCCccccCCHHHHHHHHHhC
Confidence            899999999999999862  2   3455555554433 44 5799999976432  223444444433

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=89.27  E-value=1.1  Score=44.21  Aligned_cols=81  Identities=12%  Similarity=-0.013  Sum_probs=69.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .++.++-.++++.+++... .++|-+|. +|+..-++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  106 (318)
T 3qfe_A           27 DTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAG  106 (318)
T ss_dssp             TEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999999   4788998999998888763 35666665 678888999999999999


Q ss_pred             CCEEee
Q 012949          373 ISTVDC  378 (452)
Q Consensus       373 a~~VD~  378 (452)
                      ||.+=.
T Consensus       107 adavlv  112 (318)
T 3qfe_A          107 ANYVLV  112 (318)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            997755

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=89.21  E-value=1.3  Score=43.51  Aligned_cols=82  Identities=13%  Similarity=0.075  Sum_probs=70.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++... .++|-+| .+++..-++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G  103 (309)
T 3fkr_A           24 GDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG  103 (309)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999   5788888899998888753 4678787 5788889999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus       104 adavlv~  110 (309)
T 3fkr_A          104 AAMVMAM  110 (309)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977654

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=89.19  E-value=7  Score=39.20  Aligned_cols=120  Identities=15%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC--------------CC-----C---------------CCCCH-----
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PV-----E---------------GAIPP-----  302 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--------------p~-----~---------------~r~d~-----  302 (452)
                      ..++.++..+++++.+++.|-++.+-|... |-              |-     .               ....|     
T Consensus        75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~  153 (365)
T 2gou_A           75 YTPEQIAGWRIVTEAVHAKGCAIFAQLWHV-GRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTK  153 (365)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCEEEEEEECC-TTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCH
Confidence            345667778888888899998877667641 10              00     0               00123     


Q ss_pred             -------HHHHHHHHHHHHCCcCEEEE-------------------cCCcCCCc---HHHHHHHHHHHHHhCCCccEEEE
Q 012949          303 -------SKVAYVAKELHDMGCFEISL-------------------GDTIGVGT---PGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       303 -------e~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                             +.+++.|+.+.++|+|.|-|                   .|-.|...   +.-+.++|+++++.++..+|.+-
T Consensus       154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr  233 (365)
T 2gou_A          154 ADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR  233 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE
Confidence                   56777888889999999988                   34444432   23477889999998863378874


Q ss_pred             eCC--C-----cCcHH----HHHHHHHHcCCCEEeecccC
Q 012949          354 LHD--T-----YGQSL----PNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       354 ~Hn--d-----~GlA~----ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      ..-  .     -|...    .-+.++-++|+++|+.+-..
T Consensus       234 is~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~  273 (365)
T 2gou_A          234 LAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVD  273 (365)
T ss_dssp             ECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCB
T ss_pred             EccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence            432  1     12332    23445557999999998643

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=89.11  E-value=1.2  Score=43.06  Aligned_cols=195  Identities=17%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             HHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.+.+..+|-+.+-+..- ++.   .|-...+.+++.++.   .++. +.||..        -.+..++.++       
T Consensus        34 ~~~~a~~asg~e~vtva~rR~~~---~~~~~~~~~~~~i~~---~~~~-~lpNTa--------g~~ta~eAv~-------   91 (265)
T 1wv2_A           34 ETRRAIEASGAEIVTVAVRRTNI---GQNPDEPNLLDVIPP---DRYT-ILPNTA--------GCYDAVEAVR-------   91 (265)
T ss_dssp             HHHHHHHHSCCSEEEEEGGGCCC----------------CT---TTSE-EEEECT--------TCCSHHHHHH-------
T ss_pred             HHHHHHHHhCCCeEEEEEEeecc---ccCCCcchHHhhhhh---cCCE-ECCcCC--------CCCCHHHHHH-------
Confidence            4567788999999998753 111   000122456666642   1222 345543        1112222221       


Q ss_pred             HhHHHHHH--cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIA--AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~--~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                       ..+.|.+  .|.++|.+.+-..+....    -+..+.+    ++.+..++.|++|..|..      +    |    ..+
T Consensus        92 -~a~lare~~~~~~~iKlEv~~d~~~ll----pD~~~tv----~aa~~L~~~Gf~Vlpy~~------d----d----~~~  148 (265)
T 1wv2_A           92 -TCRLARELLDGHNLVKLEVLADQKTLF----PNVVETL----KAAEQLVKDGFDVMVYTS------D----D----PII  148 (265)
T ss_dssp             -HHHHHHTTTTSCCEEEECCBSCTTTCC----BCHHHHH----HHHHHHHTTTCEEEEEEC------S----C----HHH
T ss_pred             -HHHHHHHHcCCCCeEEEEeecCccccC----cCHHHHH----HHHHHHHHCCCEEEEEeC------C----C----HHH
Confidence             3345555  478899998754332111    1222222    333444556999864332      1    1    258


Q ss_pred             HHHHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHH-HHHHHHHHcCCCE--EeecccCCC
Q 012949          309 AKELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL-PNILISLQMGIST--VDCSVAGLG  384 (452)
Q Consensus       309 a~~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~-ANaLaAl~aGa~~--VD~Sv~GlG  384 (452)
                      ++++.++|++.|.- .--+|....-.-.++|+.+++.. .+||-.    +-|.++ +-+-.|++.||+.  |.+.|.   
T Consensus       149 akrl~~~G~~aVmPlg~pIGsG~Gi~~~~lI~~I~e~~-~vPVI~----eGGI~TPsDAa~AmeLGAdgVlVgSAI~---  220 (265)
T 1wv2_A          149 ARQLAEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-KVPVLV----DAGVGTASDAAIAMELGCEAVLMNTAIA---  220 (265)
T ss_dssp             HHHHHHSCCSEEEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEE----ESCCCSHHHHHHHHHHTCSEEEESHHHH---
T ss_pred             HHHHHHhCCCEEEeCCccCCCCCCcCCHHHHHHHHhcC-CCCEEE----eCCCCCHHHHHHHHHcCCCEEEEChHHh---
Confidence            89999999998844 22244442222245556666643 334444    445554 6778899999995  455565   


Q ss_pred             CCCCCCCCCCccc--HHHHHHHHH
Q 012949          385 GCPYAKGASGNVA--TEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaa--lE~vv~~L~  406 (452)
                             +++++.  ++.++.+++
T Consensus       221 -------~a~dP~~ma~af~~Av~  237 (265)
T 1wv2_A          221 -------HAKDPVMMAEAMKHAIV  237 (265)
T ss_dssp             -------TSSSHHHHHHHHHHHHH
T ss_pred             -------CCCCHHHHHHHHHHHHH
Confidence                   455665  455555443

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=89.05  E-value=5.1  Score=38.94  Aligned_cols=107  Identities=13%  Similarity=0.099  Sum_probs=65.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        28 ~lv~~li~~Gv~gl~~~GttGE~~-----~Ls~~Er~~v~~~~~~~~~g-r~pviaGv---------g~~~t~~ai~la~   92 (294)
T 3b4u_A           28 AHARRCLSNGCDSVTLFGTTGEGC-----SVGSRERQAILSSFIAAGIA-PSRIVTGV---------LVDSIEDAADQSA   92 (294)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGG-----GSCHHHHHHHHHHHHHTTCC-GGGEEEEE---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEeC---------CCccHHHHHHHHH
Confidence            366777889999988887777753     34666666555444444321 23443222         2235567778888


Q ss_pred             HHHHCCcCEEEEcCCc-CC-CcHHHHHHHHHHHHHhCC--CccEEE
Q 012949          311 ELHDMGCFEISLGDTI-GV-GTPGTVVPMLEAVMAVVP--VEKLAV  352 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~-G~-~~P~~v~~li~~l~~~~p--~~~l~v  352 (452)
                      .+.++|+|.+-+.=.. -- .+++.+.+.++.+.+..|  +.||-+
T Consensus        93 ~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiil  138 (294)
T 3b4u_A           93 EALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILV  138 (294)
T ss_dssp             HHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEE
Confidence            8888888866654332 22 366778888888777764  445444

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=89.04  E-value=14  Score=36.32  Aligned_cols=110  Identities=14%  Similarity=0.046  Sum_probs=67.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.|++.|.+.....                   .+.++.+|+.|++|...+           .++    +.++
T Consensus        93 ~~~~~~~~~g~d~V~l~~g~p-------------------~~~~~~l~~~g~~v~~~v-----------~s~----~~a~  138 (326)
T 3bo9_A           93 DLVKVCIEEKVPVVTFGAGNP-------------------TKYIRELKENGTKVIPVV-----------ASD----SLAR  138 (326)
T ss_dssp             HHHHHHHHTTCSEEEEESSCC-------------------HHHHHHHHHTTCEEEEEE-----------SSH----HHHH
T ss_pred             HHHHHHHHCCCCEEEECCCCc-------------------HHHHHHHHHcCCcEEEEc-----------CCH----HHHH
Confidence            467888999999988754321                   133466677888875322           123    3455


Q ss_pred             HHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeec
Q 012949          311 ELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVDCS  379 (452)
Q Consensus       311 ~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~S  379 (452)
                      .+.++|+|.|.+-.  .-|..-+....++++.+++.+. +||-.=    =|.. ..|..+++.+||+.|...
T Consensus       139 ~a~~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~-iPviaa----GGI~~~~dv~~al~~GA~gV~vG  205 (326)
T 3bo9_A          139 MVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVN-IPVIAA----GGIADGRGMAAAFALGAEAVQMG  205 (326)
T ss_dssp             HHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCS-SCEEEE----SSCCSHHHHHHHHHHTCSEEEES
T ss_pred             HHHHcCCCEEEEECCCCCccCCCccHHHHHHHHHHHcC-CCEEEE----CCCCCHHHHHHHHHhCCCEEEec
Confidence            67789999988843  1121001123366677776653 344432    3665 678888889999987765

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=89.00  E-value=8  Score=37.84  Aligned_cols=168  Identities=16%  Similarity=0.132  Sum_probs=95.0

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCC--CCCHHH--
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEG--AIPPSK--  304 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~--r~d~e~--  304 (452)
                      .+++..|.+.|+++|.+......      =|.|+-  .    ..++.+++ ..++|.  ++.   -|-.+  -++.++  
T Consensus        49 ~~~a~~A~~gGAdRIELc~~l~~------GGlTPS--~----g~i~~a~~~~~ipV~--vMI---RPRgGdF~Ys~~E~~  111 (287)
T 3iwp_A           49 VESAVNAERGGADRIELCSGLSE------GGTTPS--M----GVLQVVKQSVQIPVF--VMI---RPRGGDFLYSDREIE  111 (287)
T ss_dssp             HHHHHHHHHHTCSEEEECBCGGG------TCBCCC--H----HHHHHHHTTCCSCEE--EEC---CSSSSCSCCCHHHHH
T ss_pred             HHHHHHHHHhCCCEEEECCCCCC------CCCCCC--H----HHHHHHHHhcCCCeE--EEE---ecCCCCcccCHHHHH
Confidence            35888999999999999855211      122211  1    22344443 456665  332   23332  345444  


Q ss_pred             -HHHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcC-cHHHHHHHHHHcCCCEEeecc
Q 012949          305 -VAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYG-QSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       305 -l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~G-lA~ANaLaAl~aGa~~VD~Sv  380 (452)
                       +.+-++.+.++|+|.|.|.  +.-|....+.+.+|++...    ..++.||--=|.= -..+..-..++.|+++|=+|=
T Consensus       112 ~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~----~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG  187 (287)
T 3iwp_A          112 VMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICR----PLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSG  187 (287)
T ss_dssp             HHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT----TSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECT
T ss_pred             HHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC----CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCC
Confidence             4557788999999999987  3557777788888888643    2356666542211 133444444456999997742


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHc-CCC--CCCCChhhHHHHHH
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSG-LGV--ETNVDLRKLMLAGD  424 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~-~Gi--~t~iDl~~L~~la~  424 (452)
                      .   . |-|  -.|..-+.+++..... .-+  .-||+.+.+.++.+
T Consensus       188 ~---~-~~a--~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~  228 (287)
T 3iwp_A          188 C---D-SSA--LEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILE  228 (287)
T ss_dssp             T---S-SST--TTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHH
T ss_pred             C---C-CCh--HHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH
Confidence            2   1 111  1344444555443331 111  13788888887655

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=88.98  E-value=1.9  Score=41.41  Aligned_cols=134  Identities=17%  Similarity=0.179  Sum_probs=85.2

Q ss_pred             HHHHHHcCCCEEEEEe-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~-s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ...+.++|++.|.+.. +++-.+-..- ...|.++.+...+.+.+.++   ..|.+-+      |...-.++   .+.++
T Consensus        33 A~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~---~pviaD~------~~Gyg~~~---~~~~~  100 (255)
T 2qiw_A           33 AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVS---IPVSVDV------ESGYGLSP---ADLIA  100 (255)
T ss_dssp             HHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCS---SCEEEEC------TTCTTCCH---HHHHH
T ss_pred             HHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCC---CCEEecc------CCCcCcHH---HHHHH
Confidence            3455678999888763 3432211111 24678888887766655543   5665333      23222234   67888


Q ss_pred             HHHHCCcCEEEEcCCc-----CCCcHHHHHHHHHHHHHhCC--CccEEEEeCCCc------------CcHHHHHHHHHHc
Q 012949          311 ELHDMGCFEISLGDTI-----GVGTPGTVVPMLEAVMAVVP--VEKLAVHLHDTY------------GQSLPNILISLQM  371 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~-----G~~~P~~v~~li~~l~~~~p--~~~l~vH~Hnd~------------GlA~ANaLaAl~a  371 (452)
                      ++.++|+..|.|-|..     .+..++++.+.|+++++...  ++++-+-.|.|.            --++.-+.+-.+|
T Consensus       101 ~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eA  180 (255)
T 2qiw_A          101 QILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQA  180 (255)
T ss_dssp             HHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHc
Confidence            8889999999999986     23456778888898887622  234455555552            2456677778889


Q ss_pred             CCCEEee
Q 012949          372 GISTVDC  378 (452)
Q Consensus       372 Ga~~VD~  378 (452)
                      ||+.|=.
T Consensus       181 GAd~i~~  187 (255)
T 2qiw_A          181 GARSVYP  187 (255)
T ss_dssp             TCSEEEE
T ss_pred             CCcEEEE
Confidence            9996643

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=88.98  E-value=1  Score=43.30  Aligned_cols=171  Identities=15%  Similarity=0.086  Sum_probs=82.5

Q ss_pred             HHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhH
Q 012949          154 IRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGF  233 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~i  233 (452)
                      .+.|.+.|.+.||+|.+-+ .  |.-...+.+++.++++   +.. ++||..       ++. ..++.        ....
T Consensus        29 ~~~l~~~Gad~ielg~pr~-~--~~g~~~~~~~~~l~~~---~~~-~~pn~~-------~~~-~~~~~--------~~f~   85 (264)
T 1xm3_A           29 KEAVAVSESDILTFAVRRM-N--IFEASQPNFLEQLDLS---KYT-LLPNTA-------GAS-TAEEA--------VRIA   85 (264)
T ss_dssp             HHHHHHHTCSEEEEETTSS-T--TC-------CTTCCGG---GSE-EEEECT-------TCS-SHHHH--------HHHH
T ss_pred             HHHHHHcCCeEEEEccccc-c--cCCCCHHHHHHHHHhc---CCe-EcCCcc-------ccC-CHHHH--------HHHH
Confidence            4789999999999997532 1  1001123445555432   222 224322       000 00000        0144


Q ss_pred             HHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          234 EAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL---SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       234 e~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~---G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.+.++| .+.|.+.+......           .++...+.++.++++   |+.+.. ++    .+     +++    .+
T Consensus        86 ~~a~~agg~~~i~l~i~~d~~~-----------~~~e~~~~~~~a~~~~~~g~~vi~-~~----~~-----~~~----~a  140 (264)
T 1xm3_A           86 RLAKASGLCDMIKVEVIGCSRS-----------LLPDPVETLKASEQLLEEGFIVLP-YT----SD-----DVV----LA  140 (264)
T ss_dssp             HHHHHTTCCSSEEECCBCCTTT-----------CCBCHHHHHHHHHHHHHTTCCEEE-EE----CS-----CHH----HH
T ss_pred             HHHHHcCCCCeEEEeecCCCcc-----------cccchHHHHHHHHHHHCCCeEEEE-Ec----CC-----CHH----HH
Confidence            5666664 45555533222110           012234556677776   988742 11    11     233    35


Q ss_pred             HHHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH-HHHHHHHHHcCCCEEe
Q 012949          310 KELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS-LPNILISLQMGISTVD  377 (452)
Q Consensus       310 ~~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD  377 (452)
                      +.+.++|++.|.. .-.+|......-.++++.+++.. ++|+.+-    .|.. ..++..++++||+.|=
T Consensus       141 ~~~~~~gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~-~iPviv~----gGI~t~eda~~~~~~GAdgVi  205 (264)
T 1xm3_A          141 RKLEELGVHAIMPGASPIGSGQGILNPLNLSFIIEQA-KVPVIVD----AGIGSPKDAAYAMELGADGVL  205 (264)
T ss_dssp             HHHHHHTCSCBEECSSSTTCCCCCSCHHHHHHHHHHC-SSCBEEE----SCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHHHhCCCEEEECCcccCCCCCCCCHHHHHHHHhcC-CCCEEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence            5666778886622 22223211000133566666643 3455554    4775 5788888999999653

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=88.89  E-value=1.3  Score=41.07  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=51.8

Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcH--HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTP--GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.++.+.++|++.|.+- ..-...|  ..+.++++.+++.+|+.++.+-.|+     ...+..++++|+++|..++.|+.
T Consensus        92 ~~i~~~~~~Gad~V~l~-~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t-----~~ea~~a~~~Gad~i~~~v~g~~  165 (234)
T 1yxy_A           92 TEVDQLAALNIAVIAMD-CTKRDRHDGLDIASFIRQVKEKYPNQLLMADIST-----FDEGLVAHQAGIDFVGTTLSGYT  165 (234)
T ss_dssp             HHHHHHHTTTCSEEEEE-CCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHHHcCCCEEEEc-ccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCC-----HHHHHHHHHcCCCEEeeeccccC
Confidence            45667789999988763 2222234  3567889999998887777776664     34578899999999976777763

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}

Probab=88.80  E-value=4.1  Score=38.30  Aligned_cols=220  Identities=10%  Similarity=0.045  Sum_probs=107.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++.   ++.+.++|++.||+..+     .|   +.+++.+.+++ .++++.++. +...   .     .......+
T Consensus        30 ~~~~~~~---l~~~~~~G~~~vEl~~~-----~~---~~~~~~~~l~~-~gl~~~~~~~~~~~---~-----~~~~~~~~   89 (301)
T 3cny_A           30 DNNLQQL---LSDIVVAGFQGTEVGGF-----FP---GPEKLNYELKL-RNLEIAGQWFSSYI---I-----RDGIEKAS   89 (301)
T ss_dssp             TCCHHHH---HHHHHHHTCCEECCCTT-----CC---CHHHHHHHHHH-TTCEECEEEEEECH---H-----HHHHHHHH
T ss_pred             CCCHHHH---HHHHHHhCCCEEEecCC-----CC---CHHHHHHHHHH-CCCeEEEEeccCCC---C-----hhhHHHHH
Confidence            3555554   45566789999999732     23   45666666654 355554431 1100   0     00000001


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChH--HHhhh--------cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEA--FSKSN--------INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV  292 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~--~~~~~--------~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~  292 (452)
                      +    ...+.++.|.+.|++.|.+.......  .....        .....+...+.+.++.++|++.|+++.  +... 
T Consensus        90 ~----~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~-  162 (301)
T 3cny_A           90 E----AFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVA--YHHH-  162 (301)
T ss_dssp             H----HHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEE--EECC-
T ss_pred             H----HHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEE--EecC-
Confidence            1    12347788889999999886410000  00000        001234566777788899999998754  3321 


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHHCCcC--EEEEcCCcCCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH
Q 012949          293 GCPVEGAIPPSKVAYVAKELHDMGCF--EISLGDTIGVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL  369 (452)
Q Consensus       293 g~p~~~r~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl  369 (452)
                        +...-.+++.+.++++.   .+.+  .+++ |+.=...-. ...+.++.+    ++-...+|+||..+-.....   .
T Consensus       163 --~~~~~~~~~~~~~l~~~---~~~~~vg~~~-D~~h~~~~g~d~~~~l~~~----~~~i~~vHl~D~~~~~~~~~---~  229 (301)
T 3cny_A          163 --MGTGIQTKEETDRLMAN---TDPKLVGLLY-DTGHIAVSDGDYMALLNAH----IDRVVHVHFKDVRRSKEEEC---R  229 (301)
T ss_dssp             --TTSSSCSHHHHHHHHHT---SCTTTCEEEE-EHHHHHHHHSCSHHHHHHH----GGGEEEEEECEECHHHHHHH---H
T ss_pred             --CCcccCCHHHHHHHHHh---CCccceeEEe-chHHHHHcCCCHHHHHHHH----HhheeEEEeecCCcchhhhh---h
Confidence              11122356666655543   3432  3444 653221111 122333333    22246789998765322111   1


Q ss_pred             HcCCCEEe----ecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          370 QMGISTVD----CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       370 ~aGa~~VD----~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..+....+    ..-..+|        .|..+...++..|+..|++
T Consensus       230 ~~~~~~~~~~~~~~~~~~G--------~G~id~~~i~~~L~~~gy~  267 (301)
T 3cny_A          230 AKGLTFQGSFLNGMFTVPG--------DGDLDFKPVYDKLIANNYK  267 (301)
T ss_dssp             HHTCCHHHHHHTTCEECTT--------TSSCCCHHHHHHHHHTTCC
T ss_pred             hcccchhhHhhcCccccCC--------CCCccHHHHHHHHHhcCCC
Confidence            11100000    0011222        4789999999999986654

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=88.71  E-value=19  Score=35.29  Aligned_cols=176  Identities=16%  Similarity=0.193  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCC--HHHHHHHHHhccCCceeEEe----cchhhhhhhhhhhhhc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLAD--ARDVMEAVRDLEGARLPVLT----PNLKVILQRSILFQQC  217 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D--~e~v~~~i~~~~~~~l~~l~----~~~~~~i~r~~~~~~~  217 (452)
                      .++.+.-.++++.|.+.|++.|-+.--..  -.+.+.+  ..++++.+.+..+-++++++    .+.+            
T Consensus        28 ~iD~~~l~~lv~~li~~Gv~gl~v~GtTG--E~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~------------   93 (318)
T 3qfe_A           28 TLDLASQERYYAYLARSGLTGLVILGTNA--EAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTR------------   93 (318)
T ss_dssp             EECHHHHHHHHHHHHTTTCSEEEESSGGG--TGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHH------------
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEeCcccc--ChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHH------------
Confidence            47999999999999999999877642211  1233322  22333333332232334333    1111            


Q ss_pred             cchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcC--CCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC
Q 012949          218 HASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNIN--CSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP  295 (452)
Q Consensus       218 ~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~--~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p  295 (452)
                        +        ..+-.+.|.++|+|-+.+..+.   +    ++  .+.++.++-++.+.+   ..++++..|=     .|
T Consensus        94 --~--------ai~la~~a~~~Gadavlv~~P~---y----~~kp~~~~~l~~~f~~ia~---a~~lPiilYn-----~P  148 (318)
T 3qfe_A           94 --Q--------VLEHINDASVAGANYVLVLPPA---Y----FGKATTPPVIKSFFDDVSC---QSPLPVVIYN-----FP  148 (318)
T ss_dssp             --H--------HHHHHHHHHHHTCSEEEECCCC---C-------CCCHHHHHHHHHHHHH---HCSSCEEEEE-----CC
T ss_pred             --H--------HHHHHHHHHHcCCCEEEEeCCc---c----cCCCCCHHHHHHHHHHHHh---hCCCCEEEEe-----CC
Confidence              1        1234567778999999886552   1    12  245555555544443   3477775432     34


Q ss_pred             CC---CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHc
Q 012949          296 VE---GAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       296 ~~---~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~a  371 (452)
                      .-   ...+++.+.++++.   . ...+.++|+.|  ...++.++++.    ++...+.+ -.+++      ..+.++.+
T Consensus       149 ~~t~g~~l~~~~~~~La~~---~-pnIvgiKdssg--d~~~~~~~~~~----~~~~~f~v~~G~d~------~~l~~l~~  212 (318)
T 3qfe_A          149 GVCNGIDLDSDMITTIARK---N-PNVVGVKLTCA--SVGKITRLAAT----LPPAAFSVFGGQSD------FLIGGLSV  212 (318)
T ss_dssp             C----CCCCHHHHHHHHHH---C-TTEEEEEESSC--CHHHHHHHHHH----SCGGGCEEEESCGG------GHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHhh---C-CCEEEEEeCCC--CHHHHHHHHHh----cCCCCEEEEEecHH------HHHHHHHC
Confidence            32   23567777666542   3 47999999988  34555555443    33223544 44443      24578889


Q ss_pred             CCC
Q 012949          372 GIS  374 (452)
Q Consensus       372 Ga~  374 (452)
                      |++
T Consensus       213 G~~  215 (318)
T 3qfe_A          213 GSA  215 (318)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            986

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=88.70  E-value=3.5  Score=40.81  Aligned_cols=93  Identities=11%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC--cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCcc
Q 012949          272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEK  349 (452)
Q Consensus       272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G--ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~  349 (452)
                      +.++.+++.|+.+.+.    +|      .+++.+ +.++.+.++|  ++.|.+ |+ +...|....+.|+.+++.+|..+
T Consensus        85 ~~i~~~~~~g~~v~v~----~g------~~~~~~-~~a~~~~~~g~~~~~i~i-~~-~~G~~~~~~~~i~~lr~~~~~~~  151 (336)
T 1ypf_A           85 SFIRDMQSRGLIASIS----VG------VKEDEY-EFVQQLAAEHLTPEYITI-DI-AHGHSNAVINMIQHIKKHLPESF  151 (336)
T ss_dssp             HHHHHHHHTTCCCEEE----EC------CSHHHH-HHHHHHHHTTCCCSEEEE-EC-SSCCSHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHhcCCeEEEe----CC------CCHHHH-HHHHHHHhcCCCCCEEEE-EC-CCCCcHHHHHHHHHHHHhCCCCE
Confidence            4456677778765433    22      123433 5678888999  888876 43 22378889999999999987644


Q ss_pred             EEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          350 LAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       350 l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +. ..   ..+....+..|+++||+.|.++-.
T Consensus       152 vi-~G---~v~s~e~A~~a~~aGad~Ivvs~h  179 (336)
T 1ypf_A          152 VI-AG---NVGTPEAVRELENAGADATKVGIG  179 (336)
T ss_dssp             EE-EE---EECSHHHHHHHHHHTCSEEEECSS
T ss_pred             EE-EC---CcCCHHHHHHHHHcCCCEEEEecC
Confidence            43 32   234568899999999999999644

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=88.67  E-value=4.3  Score=39.68  Aligned_cols=135  Identities=13%  Similarity=0.094  Sum_probs=86.2

Q ss_pred             hHHHHHHcCCCEEEEEec-CChH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFAS-ASEA-FSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s-~Sd~-~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ....+.++|++.|.+..+ ++-. +-..- .-.|.++.+..++.+.+.   ..++|.+.      .|.. --+++.+.+.
T Consensus        33 sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~---~~~PviaD------~d~G-yg~~~~~~~~  102 (287)
T 3b8i_A           33 SARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRV---ARLPVIAD------ADHG-YGNALNVMRT  102 (287)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTT---CSSCEEEE------CTTC-SSSHHHHHHH
T ss_pred             HHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEEE------CCCC-CCCHHHHHHH
Confidence            344566789998877654 3321 11111 245788888776655443   34555422      2333 2278899999


Q ss_pred             HHHHHHCCcCEEEEcCCcC----------CCcHHHHHHHHHHHHHhC--CCccEEEEeCC---CcCcHHHHHHHHHHcCC
Q 012949          309 AKELHDMGCFEISLGDTIG----------VGTPGTVVPMLEAVMAVV--PVEKLAVHLHD---TYGQSLPNILISLQMGI  373 (452)
Q Consensus       309 a~~l~~~Gad~I~L~DT~G----------~~~P~~v~~li~~l~~~~--p~~~l~vH~Hn---d~GlA~ANaLaAl~aGa  373 (452)
                      ++++.++|+..|.|-|..+          +..++++.+.|+++++.-  ++..|---.-.   .+--++.-+.+-.+|||
T Consensus       103 v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAGA  182 (287)
T 3b8i_A          103 VVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAGA  182 (287)
T ss_dssp             HHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcCC
Confidence            9999999999999999974          455677888899988874  33223223222   11237788888899999


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      +.|
T Consensus       183 d~i  185 (287)
T 3b8i_A          183 DGI  185 (287)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            955

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=88.59  E-value=5.3  Score=40.40  Aligned_cols=139  Identities=14%  Similarity=0.058  Sum_probs=86.5

Q ss_pred             HhHHHHH-HcCCCEEEEEecC--------ChHHH---hhhcCC-CHHHHHHHHHHHHHHHHhC-CC-cEEEEEEee-ecC
Q 012949          231 QGFEAAI-AAGAKEVAIFASA--------SEAFS---KSNINC-SIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCV-VGC  294 (452)
Q Consensus       231 ~~ie~a~-~~Gi~~V~i~~s~--------Sd~~~---~~~~~~-s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~-~g~  294 (452)
                      +..+.|+ ++|.|.|.|-..-        |+..+   ...+|- |.++-.+.+.++++.+|+. |- .|.+-|+.. +-.
T Consensus       178 ~AA~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~  257 (379)
T 3aty_A          178 EGAKNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVH  257 (379)
T ss_dssp             HHHHHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGG
T ss_pred             HHHHHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccc
Confidence            3556788 8999999986542        23222   223555 8888788888888888774 42 344334321 000


Q ss_pred             CCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          295 PVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       295 p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      ......+.+...++++.+.++|++.|.+....  +...|.   + ++.+++.++. +|..=.-  +  -...+..+++.|
T Consensus       258 ~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~---~-~~~ir~~~~i-Pvi~~G~--i--t~~~a~~~l~~g  328 (379)
T 3aty_A          258 GMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGD---V-VAWVRGSYSG-VKISNLR--Y--DFEEADQQIREG  328 (379)
T ss_dssp             GCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCC---H-HHHHHTTCCS-CEEEESS--C--CHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccH---H-HHHHHHHCCC-cEEEECC--C--CHHHHHHHHHcC
Confidence            01234567888999999999999999886521  011232   5 7788887754 4443221  2  367788889998


Q ss_pred             -CCEEee
Q 012949          373 -ISTVDC  378 (452)
Q Consensus       373 -a~~VD~  378 (452)
                       ||.|-.
T Consensus       329 ~aD~V~i  335 (379)
T 3aty_A          329 KVDAVAF  335 (379)
T ss_dssp             SCSEEEE
T ss_pred             CCeEEEe
Confidence             887643

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=88.58  E-value=5.8  Score=37.75  Aligned_cols=168  Identities=14%  Similarity=0.039  Sum_probs=87.1

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE-ecchhhhhhhhhhhhhccchhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL-TPNLKVILQRSILFQQCHASVISSNLWVY  229 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l-~~~~~~~i~r~~~~~~~~~~~i~~~~~~~  229 (452)
                      .++++.|.++|.|.||+|.-..       ...+.+++.++++....++.+ .+...                        
T Consensus        23 ~~~~~~l~~~GaD~ielG~S~G-------vt~~~~~~~v~~ir~~~~Pivlm~y~~------------------------   71 (240)
T 1viz_A           23 DEQLEILCESGTDAVIIGGSDG-------VTEDNVLRMMSKVRRFLVPCVLEVSAI------------------------   71 (240)
T ss_dssp             HHHHHHHHTSCCSEEEECC-----------CHHHHHHHHHHHTTSSSCEEEECSCG------------------------
T ss_pred             HHHHHHHHHcCCCEEEECCCCC-------CCHHHHHHHHHHhhCcCCCEEEecCcc------------------------
Confidence            4568999999999999997211       123445565655433344432 23221                        


Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-----CcEE--EEEEeeecCCCCC--C-
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLS-----IPVR--GYVSCVVGCPVEG--A-  299 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G-----~~V~--~~l~~~~g~p~~~--r-  299 (452)
                       ..+    ++|+|.+-+..=.++-.        .+..   +...++.+++.|     +++.  +|+..   .|...  + 
T Consensus        72 -n~i----~~G~dg~iiPdLp~ee~--------~~~~---~g~~~~a~~~~g~~~~~l~~i~~gy~l~---~P~~~~~rl  132 (240)
T 1viz_A           72 -EAI----VPGFDLYFIPSVLNSKN--------ADWI---VGMHQKAMKEYGELMSMEEIVAEGYCIA---NPDCKAAAL  132 (240)
T ss_dssp             -GGC----CSCCSEEEEEEETTBSS--------GGGT---THHHHHHHHHCHHHHHHSCEEEEEEEEC---CTTSHHHHH
T ss_pred             -ccc----cCCCCEEEEcccCcccC--------hhhh---cchhHHHHHHcCCCCcceeeeecccEEE---CCCCceEEe
Confidence             012    57999877765322210        0000   011235577888     6643  45542   24322  1 


Q ss_pred             ------CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          300 ------IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       300 ------~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                            .+++.+..+++...-.+-.-|++. +.|..   ...++|+.+++..+..|+.+=    .|.-.......+..||
T Consensus       133 ~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~-s~G~~---~~~~~i~~i~~~~~~~Pv~vG----gGI~t~e~a~~~~~gA  204 (240)
T 1viz_A          133 TEADADLNMDDIVAYARVSELLQLPIFYLE-YSGVL---GDIEAVKKTKAVLETSTLFYG----GGIKDAETAKQYAEHA  204 (240)
T ss_dssp             TTBCCCCCHHHHHHHHHHHHHTTCSEEEEE-CTTSC---CCHHHHHHHHHTCSSSEEEEE----SSCCSHHHHHHHHTTC
T ss_pred             eccCCCCCHHHHHHHHHhCcccCCCEEEEe-CCCcc---ChHHHHHHHHHhcCCCCEEEE----eccCCHHHHHHHHhCC
Confidence                  235555555544332344566654 46762   257788888887633455442    2444444444454598


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      +.|
T Consensus       205 d~V  207 (240)
T 1viz_A          205 DVI  207 (240)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            865

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=88.45  E-value=1.8  Score=42.40  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=71.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCE-EEEc-CCcCC-CcHHHHHHHHHHHHH--hC
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFE-ISLG-DTIGV-GTPGTVVPMLEAVMA--VV  345 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~-I~L~-DT~G~-~~P~~v~~li~~l~~--~~  345 (452)
                      +++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+... |.+. .+..+ .....+..+++.+.+  .+
T Consensus        10 ~~ll~~A~~~~yAV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~   79 (288)
T 3q94_A           10 KEMLNKALEGKYAVGQ-----FN-----MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI   79 (288)
T ss_dssp             HHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCcEEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCC
Confidence            5677899999987752     31     235788989999999998774 4443 23334 234556777877776  44


Q ss_pred             CCccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCC
Q 012949          346 PVEKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGG  385 (452)
Q Consensus       346 p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGe  385 (452)
                      + +|+.+|.  |-|........|+++|.+  ++|+|-..+-|
T Consensus        80 ~-VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~ee  118 (288)
T 3q94_A           80 T-VPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHHPFEE  118 (288)
T ss_dssp             C-SCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCHHH
T ss_pred             C-CcEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH
Confidence            3 5777765  556678889999999998  77999876544

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=88.43  E-value=3.7  Score=39.90  Aligned_cols=82  Identities=11%  Similarity=0.058  Sum_probs=69.5

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhC-CCccEEEEe-CCCcCcHHHHHHHHHHcCC
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVV-PVEKLAVHL-HDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~-p~~~l~vH~-Hnd~GlA~ANaLaAl~aGa  373 (452)
                      ..|.+.+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+++.. +.++|-+|. +++..-++..+..|-++||
T Consensus        19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga   98 (292)
T 3daq_A           19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA   98 (292)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence            678899999999999999999999999985   56788888888888875 345777776 7888889999999999999


Q ss_pred             CEEeecc
Q 012949          374 STVDCSV  380 (452)
Q Consensus       374 ~~VD~Sv  380 (452)
                      +.+=..-
T Consensus        99 davlv~~  105 (292)
T 3daq_A           99 DAIMLIT  105 (292)
T ss_dssp             SEEEEEC
T ss_pred             CEEEECC
Confidence            9876643

>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A

Probab=88.41  E-value=23  Score=35.84  Aligned_cols=19  Identities=21%  Similarity=0.396  Sum_probs=16.4

Q ss_pred             CCcccHHHHHHHHHcCCCC
Q 012949          393 SGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       393 aGNaalE~vv~~L~~~Gi~  411 (452)
                      .|.++...++.+|+..|++
T Consensus       306 ~G~vD~~~i~~aL~~~gY~  324 (386)
T 3bdk_A          306 AGDIDMNAVVKLLVDYDWQ  324 (386)
T ss_dssp             GSSCCHHHHHHHHHHTTCC
T ss_pred             CCCcCHHHHHHHHHHhCCc
Confidence            5889999999999987763

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=88.37  E-value=7.3  Score=38.00  Aligned_cols=107  Identities=18%  Similarity=0.091  Sum_probs=70.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++..++.|++.|-+.-+..|..     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        36 ~lv~~li~~Gv~Gl~v~GtTGE~~-----~Ls~eEr~~v~~~~~~~~~g-rvpViaGv---------g~~~t~~ai~la~  100 (303)
T 2wkj_A           36 RLVQFNIQQGIDGLYVGGSTGEAF-----VQSLSEREQVLEIVAEEAKG-KIKLIAHV---------GCVSTAESQQLAA  100 (303)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-TSEEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECeeccChh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHH
Confidence            366777889999998887777753     35777777666666665543 34443211         2335677888888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .+.++|+|.+-+. =..--.+++.+++.++.+.+..++.||-+
T Consensus       101 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiil  143 (303)
T 2wkj_A          101 SAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVV  143 (303)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence            8888999866553 33333577888888888887755234433

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=88.31  E-value=4.1  Score=40.51  Aligned_cols=24  Identities=8%  Similarity=0.077  Sum_probs=10.5

Q ss_pred             EEEEe-cCChHHHhhhcCCCHHHHH
Q 012949          244 VAIFA-SASEAFSKSNINCSIEDSL  267 (452)
Q Consensus       244 V~i~~-s~Sd~~~~~~~~~s~e~~l  267 (452)
                      |.|+. ..-|-++......+.++.+
T Consensus         9 v~i~DttlRDG~Q~~~~~~~~e~k~   33 (345)
T 1nvm_A            9 LYISDVTLRDGSHAIRHQYTLDDVR   33 (345)
T ss_dssp             CEEEECTTTHHHHHTTTCCCHHHHH
T ss_pred             cEEEECCCCcccCCCCCCCCHHHHH
Confidence            44443 4444444333444444444

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=88.28  E-value=9.2  Score=36.19  Aligned_cols=171  Identities=13%  Similarity=0.050  Sum_probs=88.3

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNLWVY  229 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~  229 (452)
                      .++++.|.+.|.|.||+|.-  ..     ...+.+++.++++....++.+. +-..          .             
T Consensus        23 ~~~~~~l~~~GaD~IelG~S--~g-----~t~~~~~~~v~~ir~~~~Pivl~~y~~----------n-------------   72 (234)
T 2f6u_A           23 DEIIKAVADSGTDAVMISGT--QN-----VTYEKARTLIEKVSQYGLPIVVEPSDP----------S-------------   72 (234)
T ss_dssp             HHHHHHHHTTTCSEEEECCC--TT-----CCHHHHHHHHHHHTTSCCCEEECCSSC----------C-------------
T ss_pred             HHHHHHHHHcCCCEEEECCC--CC-----CCHHHHHHHHHHhcCCCCCEEEecCCc----------c-------------
Confidence            45689999999999999972  11     1345566666655433444332 2220          0             


Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHH----HHHHhCC-----CcE--EEEEEeeecCCCC-
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVA----HAAKVLS-----IPV--RGYVSCVVGCPVE-  297 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v----~~Ak~~G-----~~V--~~~l~~~~g~p~~-  297 (452)
                        .+    ++|+|.+-+..=.++-.        .+..+..-.+.+    +.++++|     +++  .+||..   .|.. 
T Consensus        73 --~i----~~gvDg~iipdLp~ee~--------~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~---~P~~~  135 (234)
T 2f6u_A           73 --NV----VYDVDYLFVPTVLNSAD--------GDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVL---NPDSA  135 (234)
T ss_dssp             --CC----CCCSSEEEEEEETTBSB--------GGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEEC---CTTSH
T ss_pred             --hh----hcCCCEEEEcccCCCCC--------HHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEE---CCCCc
Confidence              12    67999887765332210        011111111222    2236677     664  345543   3432 


Q ss_pred             --------CCCCHHHHHHHHHHHHH-CCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          298 --------GAIPPSKVAYVAKELHD-MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       298 --------~r~d~e~l~~~a~~l~~-~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                              ...+++.+..+++...+ +|-..|++ |+.|..   ...++|+.+++..+.+|+.+=+    |.-..-....
T Consensus       136 ~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~~Vyl-~~~G~~---~~~~~i~~i~~~~~~~Pv~vGg----GI~s~e~a~~  207 (234)
T 2f6u_A          136 VARVTKALCNIDKELAASYALVGEKLFNLPIIYI-EYSGTY---GNPELVAEVKKVLDKARLFYGG----GIDSREKARE  207 (234)
T ss_dssp             HHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEEE-ECTTSC---CCHHHHHHHHHHCSSSEEEEES----CCCSHHHHHH
T ss_pred             eEEeecCCCCCCHHHHHHHHHhhhhhcCCCEEEE-eCCCCc---chHHHHHHHHHhCCCCCEEEEe----cCCCHHHHHH
Confidence                    01256666666665543 34466666 446752   2567888888876334544422    3332333333


Q ss_pred             HHcCCCEE
Q 012949          369 LQMGISTV  376 (452)
Q Consensus       369 l~aGa~~V  376 (452)
                      +..||+.|
T Consensus       208 ~~~gAd~V  215 (234)
T 2f6u_A          208 MLRYADTI  215 (234)
T ss_dssp             HHHHSSEE
T ss_pred             HHhCCCEE
Confidence            33388865

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=88.27  E-value=5.6  Score=39.02  Aligned_cols=99  Identities=13%  Similarity=0.066  Sum_probs=60.8

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.+  -.++|.+.+         +..+.....++++.
T Consensus        34 lv~~li~~Gv~Gl~v~GtTGE~-----~~Lt~~Er~~v~~~~v~~~--grvpViaGv---------g~~~t~~ai~la~~   97 (313)
T 3dz1_A           34 LTDFYAEVGCEGVTVLGILGEA-----PKLDAAEAEAVATRFIKRA--KSMQVIVGV---------SAPGFAAMRRLARL   97 (313)
T ss_dssp             HHHHHHHTTCSEEEESTGGGTG-----GGSCHHHHHHHHHHHHHHC--TTSEEEEEC---------CCSSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEeCccCcCh-----hhCCHHHHHHHHHHHHHHc--CCCcEEEec---------CCCCHHHHHHHHHH
Confidence            5667778899888777666664     2356666666555555555  234443211         22355677777777


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+-+.=..-..+++.+++.++.+.+..+
T Consensus        98 A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~  132 (313)
T 3dz1_A           98 SMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIG  132 (313)
T ss_dssp             HHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHC
T ss_pred             HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCC
Confidence            77778876666444444566667777777766543

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=88.19  E-value=1.8  Score=45.39  Aligned_cols=70  Identities=16%  Similarity=0.167  Sum_probs=51.7

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+.++.+.++|+|.|.| |+. ...+..+.++|+.+++.+|+.+|.+-    ......-+..++++||+.|.+...
T Consensus       233 ~~~a~~l~~aG~d~I~i-d~a-~g~~~~~~~~i~~ir~~~p~~~Vi~g----~v~t~e~a~~l~~aGaD~I~Vg~g  302 (496)
T 4fxs_A          233 EERVKALVEAGVDVLLI-DSS-HGHSEGVLQRIRETRAAYPHLEIIGG----NVATAEGARALIEAGVSAVKVGIG  302 (496)
T ss_dssp             HHHHHHHHHTTCSEEEE-ECS-CTTSHHHHHHHHHHHHHCTTCCEEEE----EECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHhccCceEEe-ccc-cccchHHHHHHHHHHHHCCCceEEEc----ccCcHHHHHHHHHhCCCEEEECCC
Confidence            45677888899999988 433 23457788999999999987777662    123345678889999999987654

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=88.18  E-value=3.7  Score=41.45  Aligned_cols=143  Identities=13%  Similarity=0.023  Sum_probs=85.1

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEEeeecCC-CC
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-SI-PVRGYVSCVVGCP-VE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G~-~V~~~l~~~~g~p-~~  297 (452)
                      +..+.|.++|.|.|.|-.+-        |+..+  ...+|-|.++-.+.+.++++.+|+. |- .|.+-++.....+ ..
T Consensus       171 ~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~  250 (376)
T 1icp_A          171 VAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAG  250 (376)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCC
T ss_pred             HHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCC
Confidence            35567788999999986542        22211  2335667887778888888888764 42 5554454210000 01


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCc-CCCcHH-HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPG-TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~-~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                      ...+.+...++++.+.++|++.|.+..-. ....|. ...++++.+++.++. +|..-.  .+  -...+..+++.| ||
T Consensus       251 ~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~i-Pvi~~G--~i--~~~~a~~~l~~g~aD  325 (376)
T 1icp_A          251 DTNPTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKG-TFIVAG--GY--DREDGNRALIEDRAD  325 (376)
T ss_dssp             CSCHHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCS-CEEEES--SC--CHHHHHHHHHTTSCS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCC-CEEEeC--CC--CHHHHHHHHHCCCCc
Confidence            23456678899999999999999885321 001121 112456778887764 444322  12  246778888888 88


Q ss_pred             EEee
Q 012949          375 TVDC  378 (452)
Q Consensus       375 ~VD~  378 (452)
                      .|-.
T Consensus       326 ~V~~  329 (376)
T 1icp_A          326 LVAY  329 (376)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            7643

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=88.17  E-value=7.2  Score=36.04  Aligned_cols=102  Identities=12%  Similarity=-0.008  Sum_probs=67.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.++|.+.|.++..    +.  ....+.    +.+.++.+.+++.|+++.. +....  .    ...+.+.+.++
T Consensus        34 ~~l~~~~~~G~~~vEl~~~----~~--~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~~~--~----~~~~~~~~~i~   96 (257)
T 3lmz_A           34 TTLKTLERLDIHYLCIKDF----HL--PLNSTD----EQIRAFHDKCAAHKVTGYA-VGPIY--M----KSEEEIDRAFD   96 (257)
T ss_dssp             HHHHHHHHTTCCEEEECTT----TS--CTTCCH----HHHHHHHHHHHHTTCEEEE-EEEEE--E----CSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEecc----cC--CCCCCH----HHHHHHHHHHHHcCCeEEE-Eeccc--c----CCHHHHHHHHH
Confidence            4788999999999999854    10  112222    3345666788899998752 22111  1    35788999999


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      .+.++|++.|.+.  .|   .+.+.++.+...+ .+ +.|.+|.|+
T Consensus        97 ~A~~lGa~~v~~~--p~---~~~l~~l~~~a~~-~g-v~l~lEn~~  135 (257)
T 3lmz_A           97 YAKRVGVKLIVGV--PN---YELLPYVDKKVKE-YD-FHYAIHLHG  135 (257)
T ss_dssp             HHHHHTCSEEEEE--EC---GGGHHHHHHHHHH-HT-CEEEEECCC
T ss_pred             HHHHhCCCEEEec--CC---HHHHHHHHHHHHH-cC-CEEEEecCC
Confidence            9999999988873  22   3455555555443 34 579999996

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=88.17  E-value=1.2  Score=42.08  Aligned_cols=69  Identities=14%  Similarity=0.106  Sum_probs=53.4

Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      .++++.++|+|.|.+ |+.....|..+.++++.+++.  +..+..-+|+     ...+..|.++|+++|=+++.|+.
T Consensus        93 ~i~~~~~aGad~I~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t  161 (229)
T 3q58_A           93 DVDALAQAGADIIAF-DASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT  161 (229)
T ss_dssp             HHHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHHcCCCEEEE-CccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence            356678899998866 887777899999999999874  3445555554     57778999999999977777663

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=88.15  E-value=2.1  Score=41.99  Aligned_cols=82  Identities=11%  Similarity=0.063  Sum_probs=70.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+++..+ .++|-+|. +|+..-++..+..|-++|
T Consensus        30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G  109 (307)
T 3s5o_A           30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVG  109 (307)
T ss_dssp             SCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999994   788999999999998774 45666665 678888999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus       110 adavlv~  116 (307)
T 3s5o_A          110 ADAAMVV  116 (307)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977654

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=88.14  E-value=9.7  Score=37.05  Aligned_cols=122  Identities=13%  Similarity=0.022  Sum_probs=83.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     -.|.+|-.+-++.+++.++...++|.+.+         +..+.+...++++
T Consensus        32 ~lv~~li~~Gv~gl~v~GttGE~~-----~Ls~~Er~~v~~~~~~~~~g~rvpviaGv---------g~~~t~~ai~la~   97 (301)
T 3m5v_A           32 RLIKRQIENGIDAVVPVGTTGESA-----TLTHEEHRTCIEIAVETCKGTKVKVLAGA---------GSNATHEAVGLAK   97 (301)
T ss_dssp             HHHHHHHHTTCCEEECSSTTTTGG-----GSCHHHHHHHHHHHHHHHTTSSCEEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCCCCCeEEEeC---------CCCCHHHHHHHHH
Confidence            366778889999998887777753     45777777777666666654345554211         2345788899999


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEE-----eCCCcCcHHHHHHH
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVH-----LHDTYGQSLPNILI  367 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH-----~Hnd~GlA~ANaLa  367 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+ .||-++     .+.++...+..-|+
T Consensus        98 ~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilYn~P~~tg~~l~~~~~~~La  159 (301)
T 3m5v_A           98 FAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVD-IPVLLYNVPGRTGCEISTDTIIKLF  159 (301)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEEEECHHHHSCCCCHHHHHHHH
T ss_pred             HHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEeCchhhCcCCCHHHHHHHH
Confidence            9999999966554 33344577889999999988874 355543     34555555544443

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=88.08  E-value=5  Score=38.49  Aligned_cols=114  Identities=8%  Similarity=0.003  Sum_probs=67.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee-----cCCCC------C-
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV-----GCPVE------G-  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~-----g~p~~------~-  298 (452)
                      +.++.+.++|.+.|-++.....    ...+.+       ..++.+.+++.|+++.. +...+     ..|+.      . 
T Consensus        33 ~~l~~~a~~G~~~VEl~~~~~~----~~~~~~-------~~~~~~~l~~~GL~v~~-~~~~~~~~~~~~p~~~~~~~~~~  100 (303)
T 3l23_A           33 ANLRKVKDMGYSKLELAGYGKG----AIGGVP-------MMDFKKMAEDAGLKIIS-SHVNPVDTSISDPFKAMIFKYSK  100 (303)
T ss_dssp             HHHHHHHHTTCCEEEECCEETT----EETTEE-------HHHHHHHHHHTTCEEEE-EECCCBCTTCSSTTTTBCCSCCT
T ss_pred             HHHHHHHHcCCCEEEeccccCc----ccCCCC-------HHHHHHHHHHcCCeEEE-EecccccccccCcccccccccch
Confidence            4788999999999999752110    001111       23455778889999852 22111     11111      0 


Q ss_pred             ---CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-----CCcc--EEEEeCC
Q 012949          299 ---AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-----PVEK--LAVHLHD  356 (452)
Q Consensus       299 ---r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-----p~~~--l~vH~Hn  356 (452)
                         ....+.+.+.++.+.++|++.|.+.-.....++.....+++.+++..     -++.  |.+|.|+
T Consensus       101 ~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~  168 (303)
T 3l23_A          101 EVTPKIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN  168 (303)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence               01134567788889999999998862211235556555555554432     2578  9999997

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=88.08  E-value=4.1  Score=37.19  Aligned_cols=71  Identities=14%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      .++.+.++|++.|.+- +.-...| ..+.++++.+++.+|+..+.+-.|+     ...+..+.++|+++|-++..|..
T Consensus        80 ~i~~~~~~Gad~v~l~-~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~t  151 (223)
T 1y0e_A           80 EVDELIESQCEVIALD-ATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYT  151 (223)
T ss_dssp             HHHHHHHHTCSEEEEE-CSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHhCCCCEEEEe-eecccCcccCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcCc
Confidence            3455678899998873 3333345 4678899999998887777766664     45577789999999977665553

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=87.97  E-value=3.1  Score=43.61  Aligned_cols=130  Identities=18%  Similarity=0.181  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      +-.+.++.|.++|++.|++.+.. +.    .....+.++.+++. ++..+  ++-+..                      
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~-g~----~~~~~~~i~~ir~~~p~~~V--i~g~v~----------------------  281 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSH-GH----SEGVLQRIRETRAAYPHLEI--IGGNVA----------------------  281 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTCCE--EEEEEC----------------------
T ss_pred             chHHHHHHHHhccCceEEecccc-cc----chHHHHHHHHHHHHCCCceE--EEcccC----------------------
Confidence            34677889999999999998642 11    01122344444432 33332  221111                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEe-cCChHHH--hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFA-SASEAFS--KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~-s~Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                       +.++++.+.++|+|.|.+.. +.+....  ....+..   .+..+.++++++++.+++|.+         +.+-.+++.
T Consensus       282 -t~e~a~~l~~aGaD~I~Vg~g~Gs~~~tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIa---------~GGI~~~~d  348 (496)
T 4fxs_A          282 -TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGD  348 (496)
T ss_dssp             -SHHHHHHHHHHTCSEEEECSSCCTTBCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHH
T ss_pred             -cHHHHHHHHHhCCCEEEECCCCCcCcccccccCCCcc---HHHHHHHHHHHhccCCCeEEE---------eCCCCCHHH
Confidence             23478889999999998752 1111101  1112222   345556777788888888752         234456666


Q ss_pred             HHHHHHHHHHCCcCEEEEcC
Q 012949          305 VAYVAKELHDMGCFEISLGD  324 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~D  324 (452)
                      +.+.    .++||+.+.+.=
T Consensus       349 i~ka----la~GAd~V~iGs  364 (496)
T 4fxs_A          349 ISKA----IAAGASCVMVGS  364 (496)
T ss_dssp             HHHH----HHTTCSEEEEST
T ss_pred             HHHH----HHcCCCeEEecH
Confidence            6554    347999888753

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=87.93  E-value=4.1  Score=40.01  Aligned_cols=135  Identities=13%  Similarity=0.179  Sum_probs=85.1

Q ss_pred             HHHHHHcCCCEEEEEec-CCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFAS-ASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s-~Sd-~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ...+.++|++.|.+..+ ++- .+-..- .-.|.++.+..++.+.+.+   ..+|.+-+      |...-.+++.+.+.+
T Consensus        30 A~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD~------d~Gyg~~~~~~~~~v  100 (295)
T 1xg4_A           30 ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC---SLPLLVDA------DIGFGSSAFNVARTV  100 (295)
T ss_dssp             HHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC---CSCEEEEC------TTCSSSSHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC---CCCEEecC------CcccCCCHHHHHHHH
Confidence            34556789998877544 221 111111 2357888888776665543   35554222      222223789999999


Q ss_pred             HHHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCCccEEEEeCCC------cCcHHHHHHHHHHcC
Q 012949          310 KELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT------YGQSLPNILISLQMG  372 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd------~GlA~ANaLaAl~aG  372 (452)
                      +.+.++|+..|.|-|..+           +...+...+.|++.++......+-+-.-.|      +--++.-+.+..+||
T Consensus       101 ~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~eAG  180 (295)
T 1xg4_A          101 KSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAG  180 (295)
T ss_dssp             HHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHHHcC
Confidence            999999999999999974           333445667777777764222333433333      134677888899999


Q ss_pred             CCEE
Q 012949          373 ISTV  376 (452)
Q Consensus       373 a~~V  376 (452)
                      |+.|
T Consensus       181 Ad~i  184 (295)
T 1xg4_A          181 AEML  184 (295)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            9965

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=87.91  E-value=0.86  Score=43.66  Aligned_cols=79  Identities=15%  Similarity=0.041  Sum_probs=53.3

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHH--HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT--VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~--v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .|...+.+.++.+.++|+|++-+-=+-|...|.-  =.++++.+|+..|..++.+|.+=+.--..  .-.+.++||++|.
T Consensus        37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGAd~it  114 (246)
T 3inp_A           37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGATSIV  114 (246)
T ss_dssp             SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTCSEEE
T ss_pred             CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCCCEEE
Confidence            4667788999999999999554422225544322  12578888888877889999994433222  3446689999887


Q ss_pred             ecc
Q 012949          378 CSV  380 (452)
Q Consensus       378 ~Sv  380 (452)
                      .-.
T Consensus       115 vH~  117 (246)
T 3inp_A          115 FHP  117 (246)
T ss_dssp             ECG
T ss_pred             Ecc
Confidence            653

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=87.90  E-value=2.3  Score=43.03  Aligned_cols=101  Identities=10%  Similarity=0.117  Sum_probs=78.8

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+.+.++++.+.+.|++.|.++-|+|   .++.++-.++++.+.+...+ ++|-++. +++..-++..+..|-++
T Consensus        74 dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~  153 (360)
T 4dpp_A           74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAV  153 (360)
T ss_dssp             TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999   67888888889888887643 5666655 57888888899999999


Q ss_pred             CCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          372 GISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       372 Ga~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      ||+.+=..-      ||-.    .++-|+++..++.
T Consensus       154 Gadavlvv~------PyY~----k~sq~gl~~hf~~  179 (360)
T 4dpp_A          154 GMHAALHIN------PYYG----KTSIEGLIAHFQS  179 (360)
T ss_dssp             TCSEEEEEC------CCSS----CCCHHHHHHHHHT
T ss_pred             CCCEEEEcC------CCCC----CCCHHHHHHHHHH
Confidence            999775542      3221    1456777777663

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=87.86  E-value=2.2  Score=42.04  Aligned_cols=73  Identities=16%  Similarity=0.192  Sum_probs=52.2

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC-C-----cCCCcHHHHHHHH---HHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD-T-----IGVGTPGTVVPML---EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D-T-----~G~~~P~~v~~li---~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      +++...+.++.+.+.|||.|-+.= +     ..+...+++.+++   +.+++.+ +++|.+...+     ..-+.+|+++
T Consensus        61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~~-----~~V~~aAl~a  134 (297)
T 1tx2_A           61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTYK-----AEVAKQAIEA  134 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECSC-----HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCCC-----HHHHHHHHHc
Confidence            578888899999999999998873 2     2233345555555   6667665 4579997753     3566788889


Q ss_pred             CCCEEeec
Q 012949          372 GISTVDCS  379 (452)
Q Consensus       372 Ga~~VD~S  379 (452)
                      |+++|+-.
T Consensus       135 Ga~iINdv  142 (297)
T 1tx2_A          135 GAHIINDI  142 (297)
T ss_dssp             TCCEEEET
T ss_pred             CCCEEEEC
Confidence            99999543

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=87.80  E-value=3.3  Score=40.25  Aligned_cols=62  Identities=16%  Similarity=0.019  Sum_probs=44.5

Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                      +.++++.+++.|+..||+.+.-..+......+.-.+..++.+.++|++|+++|+.|...+-.
T Consensus        30 ~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~~g~~~~~~~~~l~~~v~~a~~~Gi~vildlh~   91 (343)
T 1ceo_A           30 TEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMHH   91 (343)
T ss_dssp             CHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEecCCHHHhccccCCCcccHHHHHHHHHHHHHHHHCCCEEEEEecC
Confidence            34689999999999999987633221111112223567899999999999999999877665

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=87.75  E-value=0.96  Score=46.69  Aligned_cols=147  Identities=18%  Similarity=0.099  Sum_probs=88.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc--EEEEEEeeecCCC---------C-C
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP--VRGYVSCVVGCPV---------E-G  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~--V~~~l~~~~g~p~---------~-~  298 (452)
                      +.+..++++|...|++=.|.+..  ..++-.+.+-..++..+++++|++. ..  +.+.|.++.|.++         . +
T Consensus       108 e~i~~aI~aGFtSVMiD~S~~~~--~~~~pl~eNi~~~rt~elv~~Ah~~-~~~~~eaElG~vgG~Ev~v~~~~~~~~~~  184 (420)
T 2fiq_A          108 ELVKAYVRAGFSKIHLDASMSCA--GDPIPLAPETVAERAAVLCFAAESV-ATDCQREQLSYVIGTEVPVPGGEASAIQS  184 (420)
T ss_dssp             HHHHHHHHTTCCEEEECCCSCCB--TCCSSCCHHHHHHHHHHHHHHHHHH-CCHHHHHHCEEEEECSSCC----------
T ss_pred             HHHHHHHHhCCCEEEECCCCCCC--CCCCCccHHHHHHHHHHHHHHHHHH-cccCCcccceEEeeeecCCCCCcccccCC
Confidence            47788999999999986554211  0011112222334468888998886 32  2122222233331         1 1


Q ss_pred             --CCCHHHHHHHHH----HHHHCCcCE-----EEEcCCcCC-----CcHHHHHHHHHHHHHhCCCcc-EEEEeCCCcCcH
Q 012949          299 --AIPPSKVAYVAK----ELHDMGCFE-----ISLGDTIGV-----GTPGTVVPMLEAVMAVVPVEK-LAVHLHDTYGQS  361 (452)
Q Consensus       299 --r~d~e~l~~~a~----~l~~~Gad~-----I~L~DT~G~-----~~P~~v~~li~~l~~~~p~~~-l~vH~Hnd~GlA  361 (452)
                        .++|+...++++    .+.+.|+|.     |.|+=.+|.     ..|.-=.+.++.|++.++. | |.+-.|.+-|+.
T Consensus       185 ~~~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l~~I~~~v~~-P~LVle~HGgSg~~  263 (420)
T 2fiq_A          185 VHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIEN-TRMVYEAHSTDYQT  263 (420)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGGHHHHHHHTT-SSCEEEESCCTTCC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHHHHHHHhcCC-CCEEEecCCCCCCC
Confidence              588998888887    677889765     335533332     1122222334444444433 4 777779999999


Q ss_pred             HHHHHHHHHcCCCEEe-eccc
Q 012949          362 LPNILISLQMGISTVD-CSVA  381 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD-~Sv~  381 (452)
                      -.+...+++.|+..|+ +|-.
T Consensus       264 ~e~l~~~v~~Gi~kiNV~t~l  284 (420)
T 2fiq_A          264 RTAYWELVRDHFAILKVGPAL  284 (420)
T ss_dssp             HHHHHHHHHTTEEEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEECHHH
Confidence            9999999999999888 4433

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=87.71  E-value=2  Score=42.36  Aligned_cols=82  Identities=15%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .++.++-.++++.+++... .++|-++. +|+..-++..+..|-++|
T Consensus        38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~G  117 (315)
T 3si9_A           38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAG  117 (315)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998   4678888888888887653 35666664 678888899999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.|=..
T Consensus       118 adavlv~  124 (315)
T 3si9_A          118 ADAVLVV  124 (315)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=87.66  E-value=2.6  Score=41.24  Aligned_cols=115  Identities=15%  Similarity=0.105  Sum_probs=80.6

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCC-cCCCcHHHHHHHHHHHHHhCCCc
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDT-IGVGTPGTVVPMLEAVMAVVPVE  348 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT-~G~~~P~~v~~li~~l~~~~p~~  348 (452)
                      +++.+.|++.|+-|-+     |.     -.+.+.+..+++.+.+.+.. +|.+.-. ..+.....+..+++.+.+.++ +
T Consensus         7 ~~ll~~A~~~~yAv~A-----fN-----v~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~-V   75 (286)
T 1gvf_A            7 KYLLQDAQANGYAVPA-----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-M   75 (286)
T ss_dssp             HHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHCCCEEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCC-C
Confidence            5677899999987742     21     13568888888888888866 5555443 233445677888888888776 4


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      |+.+|.  |-|........|+++|.+  ++|+|-..+-|         | .-|.+++...+.
T Consensus        76 PValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~lp~ee---------Ni~~Tk~vv~~ah~  126 (286)
T 1gvf_A           76 PLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHS  126 (286)
T ss_dssp             CBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHHH---------HHHHHHHHHHHHHH
T ss_pred             cEEEEc--CCCCCHHHHHHHHHcCCCeEEECCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            777765  455568999999999998  77999776655         4 345566666653

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=87.61  E-value=4.7  Score=39.69  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+++... .++|-+|. +++..-++..+..|-++|
T Consensus        40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  119 (315)
T 3na8_A           40 GGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLG  119 (315)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999995   678888889988888753 35666665 578888899999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus       120 adavlv~  126 (315)
T 3na8_A          120 AEAVMVL  126 (315)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9977654

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=87.51  E-value=5.8  Score=38.72  Aligned_cols=83  Identities=17%  Similarity=0.142  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++... .++|-++. +++..-++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  106 (303)
T 2wkj_A           27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG  106 (303)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999988   6788898999999888764 35676665 456777888888999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      |+.+=..-
T Consensus       107 adavlv~~  114 (303)
T 2wkj_A          107 FDAVSAVT  114 (303)
T ss_dssp             CSEEEEEC
T ss_pred             CCEEEecC
Confidence            99776553

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=87.46  E-value=14  Score=35.11  Aligned_cols=102  Identities=16%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             HHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc------CC-------------Cc
Q 012949          271 RAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI------GV-------------GT  330 (452)
Q Consensus       271 ~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~------G~-------------~~  330 (452)
                      .+..+.+|+.|-+ +..+|.       .+-.+.+...++++.+.+.|+|.|-+.=..      |.             .+
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~-------~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~   77 (268)
T 1qop_A            5 ENLFAQLNDRREGAFVPFVT-------LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVT   77 (268)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCceEEEEee-------CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCC
Confidence            3445555655554 344553       233456888999999999999987772111      11             12


Q ss_pred             HHHHHHHHHHHHHhCCCccEEEEe-CCC-cCcHHHH-HHHHHHcCCCEEeec
Q 012949          331 PGTVVPMLEAVMAVVPVEKLAVHL-HDT-YGQSLPN-ILISLQMGISTVDCS  379 (452)
Q Consensus       331 P~~v~~li~~l~~~~p~~~l~vH~-Hnd-~GlA~AN-aLaAl~aGa~~VD~S  379 (452)
                      ...+.++++.+++..+..|+.+=. -|. +-.++.. .-.+.++|++.|-.-
T Consensus        78 ~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~  129 (268)
T 1qop_A           78 PAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA  129 (268)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc
Confidence            344568899999884444544411 111 1122233 334668999966543

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=87.41  E-value=9.1  Score=36.06  Aligned_cols=139  Identities=15%  Similarity=0.089  Sum_probs=87.6

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-C-CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-L-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      -.+.|.+.|+.-|-+.-.                       .++.+++ + |++    ++.+.|.|... .+.+.-+.-+
T Consensus        22 l~~~A~~~~~~aVcv~p~-----------------------~v~~a~~~l~gv~----v~tvigFP~G~-~~~~~k~~E~   73 (226)
T 1vcv_A           22 GARKAEELGVAAYCVNPI-----------------------YAPVVRPLLRKVK----LCVVADFPFGA-LPTASRIALV   73 (226)
T ss_dssp             HHHHHHHHTCSEEEECGG-----------------------GHHHHGGGCSSSE----EEEEESTTTCC-SCHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEECHH-----------------------HHHHHHHHhCCCe----EEEEeCCCCCC-CchHHHHHHH
Confidence            567788888887775421                       1234443 2 332    44556777654 4555555566


Q ss_pred             HHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC--cc--EEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc-
Q 012949          310 KELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVA-  381 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~--~~--l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~-  381 (452)
                      +. .+.||+.|-+.=-+|   ...-..+.+-|+.+++..+.  ++  |+...=++ -.=...+..|+++|||+|=+|-+ 
T Consensus        74 ~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~-eei~~a~~ia~eaGADfVKTSTGf  151 (226)
T 1vcv_A           74 SR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRD-EERYTLYDIIAEAGAHFIKSSTGF  151 (226)
T ss_dssp             HH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH-HHHHHHHHHHHHHTCSEEECCCSC
T ss_pred             HH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCH-HHHHHHHHHHHHcCCCEEEeCCCC
Confidence            67 889999998888788   45567888888998887653  22  22111122 12234567788999999999842 


Q ss_pred             -------CCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          382 -------GLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       382 -------GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                             ++|.       +|++.+|++-.+.+.
T Consensus       152 ~~~~~~~~~~~-------~~gAt~~dv~lm~~~  177 (226)
T 1vcv_A          152 AEEAYAARQGN-------PVHSTPERAAAIARY  177 (226)
T ss_dssp             CCHHHHHHTTC-------CSSCCHHHHHHHHHH
T ss_pred             CccccccccCC-------CCCCCHHHHHHHHHH
Confidence                   1222       467888888766654

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=87.37  E-value=1.5  Score=44.21  Aligned_cols=88  Identities=19%  Similarity=0.284  Sum_probs=66.8

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      .|.+..++.++++.++||+.|+++    +-++ +..+.++.+++..+ +||..-.|-|+-+|++    |+++|++.+  .
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRva----vp~~-~~a~al~~I~~~~~-vPlvaDiHf~~~lal~----a~e~G~dkl--R  110 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVA----VPHK-EDVEALEEIVKKSP-MPVIADIHFAPSYAFL----SMEKGVHGI--R  110 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEE----CCSH-HHHHHHHHHHHHCS-SCEEEECCSCHHHHHH----HHHTTCSEE--E
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeC----CCCh-HHHHHHHHHHhcCC-CCEEEeCCCCHHHHHH----HHHhCCCeE--E
Confidence            578888999999999999999883    3333 44677899999886 5899999999988765    899999974  3


Q ss_pred             ccCCCCCCCCCCCCCcc----cHHHHHHHHHcCCC
Q 012949          380 VAGLGGCPYAKGASGNV----ATEDVVYMLSGLGV  410 (452)
Q Consensus       380 v~GlGecP~a~graGNa----alE~vv~~L~~~Gi  410 (452)
                      |+           .||.    -.++|+...++.|+
T Consensus       111 IN-----------PGNig~~~~~~~vv~~ak~~~~  134 (366)
T 3noy_A          111 IN-----------PGNIGKEEIVREIVEEAKRRGV  134 (366)
T ss_dssp             EC-----------HHHHSCHHHHHHHHHHHHHHTC
T ss_pred             EC-----------CcccCchhHHHHHHHHHHHcCC
Confidence            44           3444    46778887776554

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=87.36  E-value=4  Score=39.76  Aligned_cols=78  Identities=14%  Similarity=0.171  Sum_probs=51.0

Q ss_pred             CCC-CCHHHHHHHHHHHHHCCcCEEEEcC-Cc--C---CCcHHHH---HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHH
Q 012949          297 EGA-IPPSKVAYVAKELHDMGCFEISLGD-TI--G---VGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNIL  366 (452)
Q Consensus       297 ~~r-~d~e~l~~~a~~l~~~Gad~I~L~D-T~--G---~~~P~~v---~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaL  366 (452)
                      .++ .+++.+.+.++.+.+.|||.|-+.= ++  |   +...+++   ...|+.+++.  +++|.++..+     ..-+.
T Consensus        22 gg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT~~-----~~va~   94 (280)
T 1eye_A           22 GGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDTMR-----ADVAR   94 (280)
T ss_dssp             SCCCCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEECSC-----HHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeCCC-----HHHHH
Confidence            344 4789999999999999999998873 21  1   1123444   4445555543  5689998765     35667


Q ss_pred             HHHHcCCCEEeeccc
Q 012949          367 ISLQMGISTVDCSVA  381 (452)
Q Consensus       367 aAl~aGa~~VD~Sv~  381 (452)
                      +|+++|+++|+-.-+
T Consensus        95 aAl~aGa~iINdvsg  109 (280)
T 1eye_A           95 AALQNGAQMVNDVSG  109 (280)
T ss_dssp             HHHHTTCCEEEETTT
T ss_pred             HHHHcCCCEEEECCC
Confidence            899999999965433

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=87.29  E-value=2.3  Score=41.46  Aligned_cols=73  Identities=19%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcC-Cc--C---CC---cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGD-TI--G---VG---TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~D-T~--G---~~---~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      +++.+.+.++.+.+.|||.|-+.= ++  |   +.   ...++..+|+.+++++ +.+|.+++.+     ..-+.+|+++
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~-----~~va~aAl~a  109 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSK-----PEVIRESAKV  109 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCC-----HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCC-----HHHHHHHHHc
Confidence            578899999999999999998875 32  2   11   1234566677777666 4689998765     3566789999


Q ss_pred             CCCEEeec
Q 012949          372 GISTVDCS  379 (452)
Q Consensus       372 Ga~~VD~S  379 (452)
                      |+++|+-.
T Consensus       110 Ga~iINdv  117 (282)
T 1aj0_A          110 GAHIINDI  117 (282)
T ss_dssp             TCCEEEET
T ss_pred             CCCEEEEC
Confidence            99999643

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=87.24  E-value=6  Score=38.66  Aligned_cols=83  Identities=23%  Similarity=0.136  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-++ .+|+..-++..+..|-++|
T Consensus        32 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~G  111 (304)
T 3cpr_A           32 GDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG  111 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   67888888999988877643 556554 5667888889999999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      |+.+=..-
T Consensus       112 adavlv~~  119 (304)
T 3cpr_A          112 ADGLLVVT  119 (304)
T ss_dssp             CSEEEEEC
T ss_pred             CCEEEECC
Confidence            99776553

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=87.23  E-value=12  Score=36.60  Aligned_cols=189  Identities=13%  Similarity=0.108  Sum_probs=108.6

Q ss_pred             hhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--------CH
Q 012949          111 DIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--------DA  182 (452)
Q Consensus       111 ~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--------D~  182 (452)
                      -..+|++++++-.++-..+-=+   |+.-   -+-.+   -.+.+.|.++|+.-+ +-|+..--+-.+++        -.
T Consensus        80 iv~e~~~evlp~v~~iPV~Agv---~~~D---P~~~~---g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm~~  149 (286)
T 2p10_A           80 IVVDMAREVLPVVRHTPVLAGV---NGTD---PFMVM---STFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGMSY  149 (286)
T ss_dssp             HHHHHHHHHGGGCSSSCEEEEE---CTTC---TTCCH---HHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTCCH
T ss_pred             HHHHHHHhhhccCCCCCEEEEE---CCcC---CCcCH---HHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCCCH
Confidence            5678899999876653222212   2211   11233   334499999999999 87752110000000        12


Q ss_pred             HHHHHHHHhc--cCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChH-HHhhhc
Q 012949          183 RDVMEAVRDL--EGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEA-FSKSNI  259 (452)
Q Consensus       183 e~v~~~i~~~--~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~-~~~~~~  259 (452)
                      +++.+.++..  .+.-..+.+.+.                          ++.+++.++|.|.|-+-.+...- .+-...
T Consensus       150 ~~eve~I~~A~~~gL~Ti~~v~~~--------------------------eeA~amA~agpDiI~~h~glT~gglIG~~~  203 (286)
T 2p10_A          150 AQEVEMIAEAHKLDLLTTPYVFSP--------------------------EDAVAMAKAGADILVCHMGLTTGGAIGARS  203 (286)
T ss_dssp             HHHHHHHHHHHHTTCEECCEECSH--------------------------HHHHHHHHHTCSEEEEECSCC---------
T ss_pred             HHHHHHHHHHHHCCCeEEEecCCH--------------------------HHHHHHHHcCCCEEEECCCCCCCCcccCCC
Confidence            3344444432  232222233332                          37778889999999888774321 112234


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHH-HHHHH
Q 012949          260 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT-VVPML  338 (452)
Q Consensus       260 ~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v~~li  338 (452)
                      ..|.+++.+.+.++++.+|+..-.|. -|++  |.|.   .+++++.++.+..  .|++-+..+-++--+.|++ +.+++
T Consensus       204 avs~~~~~e~i~~i~~a~~~vnpdvi-vLc~--gGpI---stpeDv~~~l~~t--~G~~G~~gASsier~p~e~ai~~~~  275 (286)
T 2p10_A          204 GKSMDDCVSLINECIEAARTIRDDII-ILSH--GGPI---ANPEDARFILDSC--QGCHGFYGASSMERLPAEEAIRSQT  275 (286)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHCSCCE-EEEE--STTC---CSHHHHHHHHHHC--TTCCEEEESHHHHHHHHHHHHHHHH
T ss_pred             cccHHHhHHHHHHHHHHHHHhCCCcE-EEec--CCCC---CCHHHHHHHHhcC--CCccEEEeehhhhcCCHHHHHHHHH
Confidence            46888988999999999999776654 2332  2233   4678887766532  2789999888777766554 56666


Q ss_pred             HHHHH
Q 012949          339 EAVMA  343 (452)
Q Consensus       339 ~~l~~  343 (452)
                      +.+|.
T Consensus       276 ~~fk~  280 (286)
T 2p10_A          276 LAFKA  280 (286)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66665

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=87.12  E-value=4.5  Score=41.36  Aligned_cols=126  Identities=13%  Similarity=0.207  Sum_probs=68.9

Q ss_pred             HHHHHHHHHCCCCEEEEecC-CCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEATSF-VSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVY  229 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~-~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~  229 (452)
                      .+.++.|.++|++.|.+.+. ..|.      ...+.++.+++..+..  +++.+..                       +
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~------~~~e~I~~ik~~~~i~--Vi~g~V~-----------------------t  194 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSL------NIIRTLKEIKSKMNID--VIVGNVV-----------------------T  194 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBH------HHHHHHHHHHTTCCCE--EEEEEEC-----------------------S
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcc------cHHHHHHHHHhcCCCe--EEEeecC-----------------------C
Confidence            68899999999999998532 2221      1123344444322333  3322211                       2


Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhh---hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKS---NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVA  306 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~---~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~  306 (452)
                      .+..+.+.++|+|.|.+....-..+...   ..+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.
T Consensus       195 ~e~A~~a~~aGAD~I~vG~g~Gs~~~tr~~~g~g~p---~~~al~~v~~~~~~~~IPVIA---------~GGI~~~~di~  262 (400)
T 3ffs_A          195 EEATKELIENGADGIKVGIGPGSICTTRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIG  262 (400)
T ss_dssp             HHHHHHHHHTTCSEEEECC---------CCSCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCcccccccccchh---HHHHHHHHHHHHHhcCCCEEe---------cCCCCCHHHHH
Confidence            3578889999999999842111111111   01122   244455666666667888752         23444566555


Q ss_pred             HHHHHHHHCCcCEEEEc
Q 012949          307 YVAKELHDMGCFEISLG  323 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~  323 (452)
                      +.    .++||+.|.+.
T Consensus       263 ka----lalGAd~V~vG  275 (400)
T 3ffs_A          263 KA----LAVGASSVMIG  275 (400)
T ss_dssp             HH----HTTTCSEEEEC
T ss_pred             HH----HHcCCCEEEEC
Confidence            43    45799988874

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=87.07  E-value=4.1  Score=37.94  Aligned_cols=196  Identities=9%  Similarity=-0.032  Sum_probs=104.5

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.+.++|++.||+.....   .|. .+.+++.+.+++ .++++....+. . +      |.. ...+-+    ...
T Consensus        26 ~~~l~~a~~~G~~~vEl~~~~~---~~~-~~~~~~~~~l~~-~gl~i~~~~~~-~-~------~~~-~~~~~~----~~~   87 (264)
T 1yx1_A           26 ASFLPLLAMAGAQRVELREELF---AGP-PDTEALTAAIQL-QGLECVFSSPL-E-L------WRE-DGQLNP----ELE   87 (264)
T ss_dssp             GGGHHHHHHHTCSEEEEEGGGC---SSC-CCHHHHHHHHHH-TTCEEEEEEEE-E-E------ECT-TSSBCT----THH
T ss_pred             HHHHHHHHHcCCCEEEEEHHhc---CCC-HHHHHHHHHHHH-cCCEEEEecch-h-h------cCC-chhHHH----HHH
Confidence            4567788899999999974311   111 145555555554 35555444332 1 0      110 000001    123


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|++.|.+.......          .   ..+.++.++|++.|+.+.  +...   +...-.+++.+.++++
T Consensus        88 ~~i~~A~~lGa~~v~~~~g~~~~----------~---~~l~~l~~~a~~~Gv~l~--lEn~---~~~~~~~~~~~~~ll~  149 (264)
T 1yx1_A           88 PTLRRAEACGAGWLKVSLGLLPE----------Q---PDLAALGRRLARHGLQLL--VEND---QTPQGGRIEVLERFFR  149 (264)
T ss_dssp             HHHHHHHHTTCSEEEEEEECCCS----------S---CCHHHHHHHHTTSSCEEE--EECC---SSHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEecCCCCc----------H---HHHHHHHHHHHhcCCEEE--EecC---CCCCCCCHHHHHHHHH
Confidence            47889999999999987643211          0   145677888999997654  3321   0000125677777777


Q ss_pred             HHHHCCcCEEEEcCCcCCC-cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCC
Q 012949          311 ELHDMGCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYA  389 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a  389 (452)
                      .+.+.+...=..-||.-.. ......+.++.+..+    -..+|.+|..+-.          +-+...   ..+|     
T Consensus       150 ~v~~~~~~vg~~~D~g~~~~~~~d~~~~~~~~~~~----i~~vHlkD~~~~~----------~~~~~~---~~~G-----  207 (264)
T 1yx1_A          150 LAERQQLDLAMTFDIGNWRWQEQAADEAALRLGRY----VGYVHCKAVIRNR----------DGKLVA---VPPS-----  207 (264)
T ss_dssp             HHHHTTCSEEEEEETTGGGGGTCCHHHHHHHHGGG----EEEEEECEEEECT----------TSCEEE---ECCC-----
T ss_pred             HHHhcCCCeEEEEehhhhhhcCCCHHHHHHHhhhh----EEEEEeecccCCC----------CCceee---ECCC-----
Confidence            7755554422333883222 122333444444322    3678998865421          111111   1233     


Q ss_pred             CCCCCc-ccHHHHHHHHHc
Q 012949          390 KGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       390 ~graGN-aalE~vv~~L~~  407 (452)
                         .|. .+...++..|+.
T Consensus       208 ---~G~~id~~~~~~~L~~  223 (264)
T 1yx1_A          208 ---AADLQYWQRLLQHFPE  223 (264)
T ss_dssp             ---HHHHHHHHHHHTTSCT
T ss_pred             ---CCCccCHHHHHHHhhc
Confidence               478 888888888875

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=87.07  E-value=12  Score=36.72  Aligned_cols=107  Identities=14%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.     ...|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        48 ~lv~~li~~Gv~Gl~v~GtTGE~-----~~Ls~~Er~~v~~~~v~~~~g-rvpViaGv---------g~~st~eai~la~  112 (314)
T 3qze_A           48 KLVDFHLQEGTNAIVAVGTTGES-----ATLDVEEHIQVIRRVVDQVKG-RIPVIAGT---------GANSTREAVALTE  112 (314)
T ss_dssp             HHHHHHHHHTCCEEEESSGGGTG-----GGCCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEeC---------CCcCHHHHHHHHH
Confidence            36677788999999888777775     346788877777777777654 35554211         2346788899999


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      .+.++|+|.+.+. =..--.+++.+.+.++.+.+..+ .||-++
T Consensus       113 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiilY  155 (314)
T 3qze_A          113 AAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVA-IPQILY  155 (314)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSC-SCEEEE
T ss_pred             HHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEEE
Confidence            9999999966554 33445677889999999988874 355553

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}

Probab=87.01  E-value=31  Score=35.84  Aligned_cols=228  Identities=13%  Similarity=0.059  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHH-HHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIR-RLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~-~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ++..++..|.. ...+.|+|.|-+.|-.++      .|..++.+.+... ....+.+-+-+..                 
T Consensus       179 lTekD~~dl~~~~~~~~~vD~Ia~SfVr~a------~Dv~~~r~~l~~~g~~~~iiaKIE~~e-----------------  235 (461)
T 3qtg_A          179 PAEEDVEALKAISPIRDNIDYVAISLAKSC------KDVDSVRSLLTELGFQSQVAVKIETKG-----------------  235 (461)
T ss_dssp             SCHHHHHHHHHHGGGGGGCCEEEECSCCSH------HHHHHHHHHHHHTTCCCEEEEEECSHH-----------------
T ss_pred             CCHHHHHHHHHHHHhhcCCCEEEecCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHH-----------------
Confidence            56677666642 667889999998653322      1333334444332 1233333332221                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-CCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-~~r~d  301 (452)
                            -.+.++..++. .|.|.|.-  .|.-.    -...++.....+++++.|+++|.+|...-.+ .-+.. ..+.+
T Consensus       236 ------av~nldeIl~~-sDgImVaR--GDLgv----ei~~e~v~~~Qk~ii~~~~~~gkpvi~ATQM-LeSMi~~p~PT  301 (461)
T 3qtg_A          236 ------AVNNLEELVQC-SDYVVVAR--GDLGL----HYGLDALPIVQRRIVHTSLKYGKPIAVATQL-LDSMQSSPIPT  301 (461)
T ss_dssp             ------HHHTHHHHHHT-CSEEEEEH--HHHTT----TSCTTTHHHHHHHHHHHHHHTTCCEEEESSS-SGGGGTCSSCC
T ss_pred             ------HHHhHHHHHHh-cccEEEcc--ccccc----cCCHHHHHHHHHHHHHHHHHhCCCEEEeccc-hHhhccCCCcc
Confidence                  11245555555 57666642  23211    1234455666678999999999997521111 10111 12345


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCc--CcHHHHHHHHHHcCCCEEee
Q 012949          302 PSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTY--GQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~--GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ..++.+++.+..+ |+|.|.|. .|+-.-.|-+..+++..+..+.-...-.++...+.  ..|.|...+|-..+|.+|-.
T Consensus       302 RAEvsDVanAV~d-GaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~aia~aa~~~a~~~~a~Iv~~  380 (461)
T 3qtg_A          302 RAEINDVFTTASM-GVDSLWLTNETASGKYPLAAVSWLSRILMNVEYQIPQSPLLQNSRDRFAKGLVELAQDLGANILVF  380 (461)
T ss_dssp             HHHHHHHHHHHHT-TCSEEEECHHHHTSSCHHHHHHHHHHHHHTCCCCCCCCCCCCSHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHHHHh-CCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHhcCCCEEEE
Confidence            6788888887765 99999997 57777799998888888887653211011111122  23344455566778887777


Q ss_pred             cccCCCC------CCCCCCCCCcccHHHHHHHHHcC-CCC
Q 012949          379 SVAGLGG------CPYAKGASGNVATEDVVYMLSGL-GVE  411 (452)
Q Consensus       379 Sv~GlGe------cP~a~graGNaalE~vv~~L~~~-Gi~  411 (452)
                      |-.|--.      .|-+|- -..++-+.+...|.-+ |+.
T Consensus       381 T~SG~tA~~vsr~RP~~pI-ia~T~~~~~~r~l~l~~GV~  419 (461)
T 3qtg_A          381 SMSGTLARRIAKFRPRGVV-YVGTPNVRVARSLSIVWALE  419 (461)
T ss_dssp             CSSSHHHHHHHTTCCSSCE-EEEESCHHHHHHHTTSTTEE
T ss_pred             CCCcHHHHHHHhhCCCCCE-EEeCCCHHHHhhceeccceE
Confidence            7776321      111111 1235567777777643 654

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=86.93  E-value=5.3  Score=39.65  Aligned_cols=82  Identities=10%  Similarity=0.005  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-++ .+|+..-++..+..|-++|
T Consensus        50 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  129 (332)
T 2r8w_A           50 GRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAG  129 (332)
T ss_dssp             CCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998   67888989999998887643 556554 5567788888999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      ||.|=..
T Consensus       130 adavlv~  136 (332)
T 2r8w_A          130 ADALLLA  136 (332)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9987554

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=86.90  E-value=9  Score=38.47  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=50.1

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+.++.+.++|+|.|.| |+. ...|..+.+.++.+++.++ +++.+..=    .....+..++++|||.|.+++
T Consensus       107 ~e~a~~l~eaGad~I~l-d~a-~G~~~~~~~~i~~i~~~~~-~~Vivg~v----~t~e~A~~l~~aGaD~I~VG~  174 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVL-DSA-HGHSLNIIRTLKEIKSKMN-IDVIVGNV----VTEEATKELIENGADGIKVGI  174 (361)
T ss_dssp             HHHHHHHHHTTCSEEEE-CCS-CCSBHHHHHHHHHHHHHCC-CEEEEEEE----CSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHHHcCcCeEEE-eCC-CCCcHHHHHHHHHHHHhcC-CcEEEccC----CCHHHHHHHHHcCcCEEEEec
Confidence            56788889999999887 433 3467888899999999884 45655211    234567888999999999843

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=86.89  E-value=0.97  Score=43.50  Aligned_cols=170  Identities=15%  Similarity=0.094  Sum_probs=97.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ++...-..+.+...+. ||.+-+|+..+.     +.+.+.+.+.+.......+.+. |+-. ++...  +.+        
T Consensus        23 lg~~~~~d~Le~~g~y-ID~lKfg~Gt~~-----l~~~~~l~eki~l~~~~gV~v~-~GGT-l~E~~--~~q--------   84 (251)
T 1qwg_A           23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSA-----VIDRDVVKEKINYYKDWGIKVY-PGGT-LFEYA--YSK--------   84 (251)
T ss_dssp             CCHHHHHHHHHHHGGG-CSEEEECTTGGG-----GSCHHHHHHHHHHHHTTTCEEE-ECHH-HHHHH--HHT--------
T ss_pred             CCHHHHHHHHHHhhhh-cceEEecCceee-----ecCHHHHHHHHHHHHHcCCeEE-CCcH-HHHHH--HHc--------
Confidence            5666666665554443 888899876432     1223334444443222222221 2210 01100  000        


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIP  301 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d  301 (452)
                        -...+-++.+.+.|.+.|-|....-++        +    .+.-.++|+.+++.|++|-..    +|.-+.   ...+
T Consensus        85 --g~~~~yl~~~k~lGf~~iEiS~G~i~l--------~----~~~~~~~I~~~~~~G~~v~~E----vG~k~~~~~~~~~  146 (251)
T 1qwg_A           85 --GKFDEFLNECEKLGFEAVEISDGSSDI--------S----LEERNNAIKRAKDNGFMVLTE----VGKKMPDKDKQLT  146 (251)
T ss_dssp             --TCHHHHHHHHHHHTCCEEEECCSSSCC--------C----HHHHHHHHHHHHHTTCEEEEE----ECCSSHHHHTTCC
T ss_pred             --CcHHHHHHHHHHcCCCEEEECCCcccC--------C----HHHHHHHHHHHHHCCCEEeee----ccccCCcccCCCC
Confidence              012357888999999999998754442        1    244457889999999998533    343332   3578


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc-----------CCcCCCcHHHHHHHHHHHHHhCCCccEEEEe
Q 012949          302 PSKVAYVAKELHDMGCFEISLG-----------DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHL  354 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~-----------DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~  354 (452)
                      ++.+.+.++...++||+.|.+-           |..|-.....+.    .+.+++|..+|-|-+
T Consensus       147 ~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~~~g~~r~d~v~----~i~~~l~~eklifEA  206 (251)
T 1qwg_A          147 IDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELD----VLAKNVDINKVIFEA  206 (251)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHH----HHHTTSCGGGEEEEC
T ss_pred             HHHHHHHHHHHHHCCCcEEEEeeecccCCcccCCCCCCCcHHHHH----HHHHhCChhhEEEEC
Confidence            9999999999999999877663           334444444444    444444544455544

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=86.84  E-value=11  Score=35.18  Aligned_cols=115  Identities=14%  Similarity=0.006  Sum_probs=65.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH-------H
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-------S  303 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~-------e  303 (452)
                      +.++.+.+.|.+.|.+....  .     ...+    -..+.++.+.+++.|+++............. ..++       +
T Consensus        21 ~~l~~~~~~G~~~vEl~~~~--~-----~~~~----~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~-~~d~~~r~~~~~   88 (294)
T 3vni_A           21 YYIEKVAKLGFDILEIAASP--L-----PFYS----DIQINELKACAHGNGITLTVGHGPSAEQNLS-SPDPDIRKNAKA   88 (294)
T ss_dssp             HHHHHHHHHTCSEEEEESTT--G-----GGCC----HHHHHHHHHHHHHTTCEEEEEECCCGGGCTT-CSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCcc--c-----CCcC----HHHHHHHHHHHHHcCCeEEEeecCCCCcCCC-CCCHHHHHHHHH
Confidence            47888999999999998532  0     0111    1334566778889999986422111000011 1122       4


Q ss_pred             HHHHHHHHHHHCCcCEEEE--cCCcC------CCcHHHHHHHHHHHHHhC-----CCccEEEEeCCC
Q 012949          304 KVAYVAKELHDMGCFEISL--GDTIG------VGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDT  357 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L--~DT~G------~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd  357 (452)
                      .+.+.++.+.++|++.|.+  ....+      .........+++.+++..     -++.|.+|.|+.
T Consensus        89 ~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  155 (294)
T 3vni_A           89 FYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNR  155 (294)
T ss_dssp             HHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             HHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCc
Confidence            5667888888999999874  22222      112233444444333321     246899999974

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=86.78  E-value=2.8  Score=41.03  Aligned_cols=83  Identities=22%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++... .++|-++ .+++..-++..+..|-++|
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  107 (301)
T 1xky_A           28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG  107 (301)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   6788898999998887754 3455554 4567788888999999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      |+.+=..-
T Consensus       108 adavlv~~  115 (301)
T 1xky_A          108 VDAVMLVA  115 (301)
T ss_dssp             CSEEEEEC
T ss_pred             CCEEEEcC
Confidence            99776543

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=86.67  E-value=1.8  Score=44.03  Aligned_cols=68  Identities=12%  Similarity=0.195  Sum_probs=52.3

Q ss_pred             HHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          306 AYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      .+.++.+.++|++.|.| ++ +...|..+.++|+.+++.+|+.+|.+ ..+     ...-+..+.++|||.|.++.
T Consensus       155 ~~~a~~~~~~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v~-----~~~~a~~a~~~Gad~I~vg~  223 (404)
T 1eep_A          155 IERVEELVKAHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNIV-----TKEAALDLISVGADCLKVGI  223 (404)
T ss_dssp             HHHHHHHHHTTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHHCCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCCC-----cHHHHHHHHhcCCCEEEECC
Confidence            45567788899999988 43 33578889999999999997667776 333     25677888899999999954

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=86.65  E-value=2.6  Score=41.46  Aligned_cols=82  Identities=17%  Similarity=0.082  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .++.++-.++++.+.+... .++|-+|. +++..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  102 (311)
T 3h5d_A           23 GSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG  102 (311)
T ss_dssp             SSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999   5888999999999998864 35676765 677888888899999999


Q ss_pred             C-CEEeec
Q 012949          373 I-STVDCS  379 (452)
Q Consensus       373 a-~~VD~S  379 (452)
                      + +.+=..
T Consensus       103 a~davlv~  110 (311)
T 3h5d_A          103 GFAAGLAI  110 (311)
T ss_dssp             CCSEEEEE
T ss_pred             CCcEEEEc
Confidence            7 877554

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=86.65  E-value=2.8  Score=43.89  Aligned_cols=70  Identities=14%  Similarity=0.077  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ..+.++.+.++|+|.|.| |+.- ..+..+.++|+.+++.+|+.++.+-.    .....-+..++++||+.|.+.+
T Consensus       230 ~~~~a~~l~~aG~d~I~i-d~a~-g~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~vg~  299 (490)
T 4avf_A          230 TGERVAALVAAGVDVVVV-DTAH-GHSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKVGI  299 (490)
T ss_dssp             HHHHHHHHHHTTCSEEEE-ECSC-CSBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECS
T ss_pred             hHHHHHHHhhcccceEEe-cccC-CcchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEECC
Confidence            345678888999999988 4432 34678889999999999876665521    1334667889999999998743

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=86.63  E-value=7.4  Score=36.47  Aligned_cols=111  Identities=9%  Similarity=-0.010  Sum_probs=65.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH-------H
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-------S  303 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~-------e  303 (452)
                      +.++.+.+.|.+.|.+...--+               ..+.++.+.+++.|+++.. +...+.. .-...++       +
T Consensus        42 ~~l~~~~~~G~~~vEl~~~~~~---------------~~~~~~~~~l~~~gl~v~~-~~~~~~~-~l~~~d~~~r~~~~~  104 (287)
T 3kws_A           42 EKLDFMEKLGVVGFEPGGGGLA---------------GRVNEIKQALNGRNIKVSA-ICAGFKG-FILSTDPAIRKECMD  104 (287)
T ss_dssp             HHHHHHHHTTCCEEECBSTTCG---------------GGHHHHHHHHTTSSCEECE-EECCCCS-CTTBSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCchH---------------HHHHHHHHHHHHcCCeEEE-EecCCCC-cCCCCCHHHHHHHHH
Confidence            4788899999999998865211               2244566778899998752 2211100 0011233       4


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCC------CcHHHHHHHHHHHHHh---C--CCccEEEEeCCCc
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGV------GTPGTVVPMLEAVMAV---V--PVEKLAVHLHDTY  358 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~------~~P~~v~~li~~l~~~---~--p~~~l~vH~Hnd~  358 (452)
                      .+.+.++.+.++|++.|.+.-..+.      ..+.....+++.+++.   .  -++.|.+|.||.+
T Consensus       105 ~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~  170 (287)
T 3kws_A          105 TMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIFEPLNRK  170 (287)
T ss_dssp             HHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEECCCCTT
T ss_pred             HHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcc
Confidence            6677888889999999887432221      2334444444443322   1  2468999999743

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=86.54  E-value=1.7  Score=42.92  Aligned_cols=100  Identities=11%  Similarity=-0.010  Sum_probs=77.0

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+..|.+-+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+.+... .++|-++.-++.--++..+..|-++|
T Consensus        27 dg~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~G  106 (316)
T 3e96_A           27 DGSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAG  106 (316)
T ss_dssp             TCCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcC
Confidence            35789999999999999999999999999984   678888888988888764 35777776557777788888899999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      |+.+=..      .||-..    ++-|+++..++
T Consensus       107 adavlv~------~P~y~~----~s~~~l~~~f~  130 (316)
T 3e96_A          107 ADAVMIH------MPIHPY----VTAGGVYAYFR  130 (316)
T ss_dssp             CSEEEEC------CCCCSC----CCHHHHHHHHH
T ss_pred             CCEEEEc------CCCCCC----CCHHHHHHHHH
Confidence            9977643      244322    35666666665

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=86.51  E-value=9.6  Score=37.59  Aligned_cols=145  Identities=14%  Similarity=0.053  Sum_probs=81.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCC------CC-CC
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------GA-IP  301 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~------~r-~d  301 (452)
                      ++++.+++.|+..||+-+-+++.     -+.   ..++.+.++++.||++|++|...+-+.  +..|-.      -. .+
T Consensus        31 ~~~~ilk~~G~n~vRlri~v~P~-----~g~---~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~  102 (334)
T 1fob_A           31 ALETILADAGINSIRQRVWVNPS-----DGS---YDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTD  102 (334)
T ss_dssp             CHHHHHHHHTCCEEEEEECSCCT-----TCT---TCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSC
T ss_pred             hHHHHHHHcCCCEEEEEEEECCC-----CCc---cCHHHHHHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccCC
Confidence            37788889999999986543331     010   125677788999999999988655321  111210      00 11


Q ss_pred             HH--------HHHHHHHHHHHCC--cCEEEEcC--CcCCC-------cHHHHHHH----HHHHHHhC--CCccEEEEeCC
Q 012949          302 PS--------KVAYVAKELHDMG--CFEISLGD--TIGVG-------TPGTVVPM----LEAVMAVV--PVEKLAVHLHD  356 (452)
Q Consensus       302 ~e--------~l~~~a~~l~~~G--ad~I~L~D--T~G~~-------~P~~v~~l----i~~l~~~~--p~~~l~vH~Hn  356 (452)
                      .+        +...+++.+.+.|  ++.+.+..  +.|.+       ....+..+    ++++|+..  |..++.+|+.+
T Consensus       103 ~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~v~~h~~~  182 (334)
T 1fob_A          103 LGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDD  182 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCeEEEEcCC
Confidence            11        2334556677766  56665543  23444       23444444    44466667  77789999987


Q ss_pred             CcCcHHHH--HHHHHHcC------CCEEeecccCC
Q 012949          357 TYGQSLPN--ILISLQMG------ISTVDCSVAGL  383 (452)
Q Consensus       357 d~GlA~AN--aLaAl~aG------a~~VD~Sv~Gl  383 (452)
                      -..-+.-+  ...+...|      .|+|-.+....
T Consensus       183 ~~~~~~~~~~~~~~~~~g~~~~~~~DvIG~syYp~  217 (334)
T 1fob_A          183 GWSWDQQNYFYETVLATGELLSTDFDYFGVSYYPF  217 (334)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCSS
T ss_pred             cCchHHHHHHHHHHHHcCCCCCCCcCEEEEeCCCC
Confidence            32211111  12234556      47777776643

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=86.46  E-value=6  Score=39.43  Aligned_cols=124  Identities=11%  Similarity=-0.021  Sum_probs=73.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCCh--HHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec-CCCCCC-------
Q 012949          231 QGFEAAIAAGAKEVAIFASASE--AFSKS-NINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG-CPVEGA-------  299 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd--~~~~~-~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g-~p~~~r-------  299 (452)
                      +.++.+.+.|+..|+|......  .+... ..+-......+.++.+++.|+++|+.|....-.... .++.++       
T Consensus        57 ~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p~i~~~~g~w~g~i~~~~~~  136 (343)
T 3civ_A           57 ASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKPTVNCRDGTWRGEIRFEKEH  136 (343)
T ss_dssp             HHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEEEEEETTCCCGGGCCCSBSC
T ss_pred             HHHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHCCCEEEEEEEeeccCCcccccccccCcC
Confidence            4778888899999988643211  11100 011100123566778899999999998653332210 111111       


Q ss_pred             --CCH----------HHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeC
Q 012949          300 --IPP----------SKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLH  355 (452)
Q Consensus       300 --~d~----------e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~H  355 (452)
                        .++          .++..+++.+...+++.+.+.-=.  +...+....+|++.+|+.+|. +|.++..
T Consensus       137 ~~~~~~w~~~f~~y~~~i~~~a~~a~~~~V~~~~IGNE~~~~~~~~~~~~~Li~~vR~~~~g-~VTya~~  205 (343)
T 3civ_A          137 GPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYDG-LVTYNCN  205 (343)
T ss_dssp             CTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHHHHHHCCS-EEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHccCCCceEEEECCCCCCCCchHHHHHHHHHHHHhhCCC-CEEEEec
Confidence              011          234445555556688988886311  122678899999999999987 7887753

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=86.41  E-value=5.2  Score=37.59  Aligned_cols=112  Identities=13%  Similarity=0.083  Sum_probs=66.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee-cC--------------CC
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV-GC--------------PV  296 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~-g~--------------p~  296 (452)
                      .++.+.++|.+.|.++..-..       ..+    -+.+.++.+.+++.|+++.. +...+ |.              ++
T Consensus        26 ~l~~~~~~G~~~vEl~~~~~~-------~~~----~~~~~~~~~~l~~~gl~~~~-~~~~~~g~~~~~~~~~~~~~~~~~   93 (290)
T 3tva_A           26 HLEVAQDLKVPTVQVHAPHPH-------TRT----REHAQAFRAKCDAAGIQVTV-IFGGFDGESYADIPTTARTVGLVP   93 (290)
T ss_dssp             CHHHHHHTTCSEEEEECCCGG-------GCS----HHHHHHHHHHHHHTTCEEEE-EECCCTTCCCSSHHHHHHHSSSCS
T ss_pred             HHHHHHHcCCCEEEecCCCCC-------cCC----HHHHHHHHHHHHHcCCEEEE-EeeccCCcccccccccccccCCCC
Confidence            788999999999999864221       012    13345667788899998764 22111 11              11


Q ss_pred             CC--CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949          297 EG--AIPPSKVAYVAKELHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAV---V--PVEKLAVHLHDT  357 (452)
Q Consensus       297 ~~--r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~---~--p~~~l~vH~Hnd  357 (452)
                      ..  ....+.+.+.++.+.++|++.|.+.  .|..   .......+++.+++.   .  -++.|.+|.|.+
T Consensus        94 ~~~r~~~~~~~~~~i~~a~~lG~~~v~~~--~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~  162 (290)
T 3tva_A           94 LETRASRVAEMKEISDFASWVGCPAIGLH--IGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQE  162 (290)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHTCSEEEEC--CCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEc--CCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence            10  1123567778888889999998873  1221   334444444444332   1  246789998864

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=86.40  E-value=1.7  Score=41.03  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=52.4

Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      .++.+.++|+|.|.+ |+.....|..+.++++.+++.  +..+..-+|+     ...+..|.++|+++|=+++.|+
T Consensus        93 ~i~~~~~~Gad~V~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~  160 (232)
T 3igs_A           93 DVDALAQAGAAIIAV-DGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGY  160 (232)
T ss_dssp             HHHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred             HHHHHHHcCCCEEEE-CccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccC
Confidence            356678899998866 887777899999999999874  3445555554     5677889999999997666665

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=86.37  E-value=2.6  Score=40.67  Aligned_cols=121  Identities=7%  Similarity=0.021  Sum_probs=68.0

Q ss_pred             HhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHH-HHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC--C----CCH
Q 012949          231 QGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIED-SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG--A----IPP  302 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~-~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~--r----~d~  302 (452)
                      +.++.+.++|.+.|-++..- ++.   ...+...+. .-+.+.++.+.+++.|+++.. +.  ++.+...  .    ...
T Consensus        40 ~~l~~aa~~G~~~VEl~~~~~~~~---~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~--~~~~~~~~~~~~~~~~~  113 (305)
T 3obe_A           40 NGLNRLAKAGYTDLEIFGYREDTG---KFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SH--LTPSLREYTKENMPKFD  113 (305)
T ss_dssp             HHHHHHHHHTCCEEEECCBCTTTC---CBCCC----CCCBCHHHHHHHHHHTTCEEEE-EB--CCCSCCCCCGGGHHHHH
T ss_pred             HHHHHHHHcCCCEEEecccccccc---cccCcCcccccccCHHHHHHHHHHCCCeEEE-ee--ccccccccchhhHHHHH
Confidence            47788999999999998531 100   001111110 001234556778889998752 21  1111110  0    113


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-----CCccEEEEeCCC
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-----PVEKLAVHLHDT  357 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd  357 (452)
                      +.+.+.++.+.++|++.|.+.-.-...++.....+++.+++..     -++.|.+|.|+.
T Consensus       114 ~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  173 (305)
T 3obe_A          114 EFWKKATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGILWGYHNHSN  173 (305)
T ss_dssp             HHHHHHHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCEEEEECCSG
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence            4567778888889999999863222235566655555555432     246899999985

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=86.33  E-value=5  Score=39.46  Aligned_cols=84  Identities=12%  Similarity=-0.019  Sum_probs=68.2

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++... .++|-++.=.+..-++..+..|-++|
T Consensus        27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~G  106 (314)
T 3d0c_A           27 TREIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSG  106 (314)
T ss_dssp             TCCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcC
Confidence            3578999999999999999999999999988   6788888999998887764 35666665445566778888899999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      ||.|=..-
T Consensus       107 adavlv~~  114 (314)
T 3d0c_A          107 ADCVMIHQ  114 (314)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            99776553

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=86.32  E-value=2.5  Score=41.75  Aligned_cols=115  Identities=18%  Similarity=0.159  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCCC
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      ++++.+.|++.|+-|-+     |.     -.+.+.+..+.+.+.+.+.. +|.+.- +..++....+..+++.+.+  ..
T Consensus         5 ~~~ll~~A~~~~yAV~A-----fN-----v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~--~~   72 (305)
T 1rvg_A            5 GLEILKKAREEGYGVGA-----FN-----VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE--AR   72 (305)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH--CS
T ss_pred             HHHHHHHHHHCCCEEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh--CC
Confidence            35777899999987742     21     23578888999999999876 444432 1223334556777777776  44


Q ss_pred             ccEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          348 EKLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       348 ~~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      +|+.+|.  |.|......+.|+++|.+  ++|+|-..+-+         | .-|.+++.+.+.
T Consensus        73 VPValHl--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~  124 (305)
T 1rvg_A           73 VPVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFET---------NVRETRRVVEAAHA  124 (305)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHH
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeeeeCCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            6777765  555668999999999998  78999776655         4 446667777763

>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...

Probab=86.26  E-value=2.4  Score=42.52  Aligned_cols=222  Identities=15%  Similarity=0.144  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecch---------hhhhhhhhhhhhcc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNL---------KVILQRSILFQQCH  218 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~---------~~~i~r~~~~~~~~  218 (452)
                      .+.++.+.++|++.||+.......+.+...+..+..+.+++.   .++++.++.++.         .        +....
T Consensus        36 ~e~l~~aa~~G~~~VEl~~~~~~p~~~~~~~~~~~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~--------l~~~d  107 (386)
T 1muw_A           36 VETVQRLAELGAHGVTFHDDDLIPFGSSDTERESHIKRFRQALDATGMTVPMATTNLFTHPVFKDGG--------FTAND  107 (386)
T ss_dssp             HHHHHHHHHHTCCEEEEEHHHHSCTTCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCS--------TTCSS
T ss_pred             HHHHHHHHHcCCCEEEeeCCCCCcccCcccccHHHHHHHHHHHHHhCCeEEEEecccccccccccCC--------CCCCC


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCC--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS--EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S--d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                      .++-+.......+.++.|.+.|++.|.+.....  +...........+...+.+.++.++|++.|..|+..+...-+-|.
T Consensus       108 ~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~~~e~~  187 (386)
T 1muw_A          108 RDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEPR  187 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCCCCc


Q ss_pred             CCCCCHHHHHHHHHHHHHCCcC--EEEEcCCcCCCcHH-HHHHHHHHHH--HhCCCccEEEEeCCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCF--EISLGDTIGVGTPG-TVVPMLEAVM--AVVPVEKLAVHLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~~P~-~v~~li~~l~--~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..-. ...++.+.+.+.+-.  .=..-||.=..... ...+.++.+.  .++..    +|++|+.|.           
T Consensus       188 ~~~~~~-t~~~~~~li~~v~~pn~vgl~lD~~H~~~~g~d~~~~l~~~~~~~rI~~----vHl~D~~g~-----------  251 (386)
T 1muw_A          188 GDILLP-TVGHALAFIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFH----IDLNGQSGI-----------  251 (386)
T ss_dssp             SEESSC-SHHHHHHHHTTSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHTTCBCC----CEECBCCSS-----------
T ss_pred             ccccCC-CHHHHHHHHHHhCCccceEEEeeccchhhcCCCHHHHHHHhcccCcEEE----EEeCCCCCC-----------


Q ss_pred             CCCEEeecccC---CCCCCCCCCCCCcccH-HHHHHHHHcCCCC
Q 012949          372 GISTVDCSVAG---LGGCPYAKGASGNVAT-EDVVYMLSGLGVE  411 (452)
Q Consensus       372 Ga~~VD~Sv~G---lGecP~a~graGNaal-E~vv~~L~~~Gi~  411 (452)
                             ..-.   +|.        |+... ..++..|+..|++
T Consensus       252 -------~~d~~l~~G~--------G~i~~~~~~~~~L~~~Gy~  280 (386)
T 1muw_A          252 -------KYDQDLRFGA--------GDLRAAFWLVDLLESAGYE  280 (386)
T ss_dssp             -------SSCCCBCTTS--------SSHHHHHHHHHHHHHHTCC
T ss_pred             -------CCCCCccCCC--------cchHHHHHHHHHHHhcCCC

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}

Probab=86.25  E-value=26  Score=34.09  Aligned_cols=112  Identities=13%  Similarity=0.061  Sum_probs=68.4

Q ss_pred             hHHHHHHcC--CCEEEEEecC-Ch-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          232 GFEAAIAAG--AKEVAIFASA-SE-AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       232 ~ie~a~~~G--i~~V~i~~s~-Sd-~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      .++...++|  .+.+.+.+.. ++ .|.+.. +......++++.+.++.+++.|+.+.+.+.  + .+...   .+.+.+
T Consensus       184 ~l~~L~~~g~~~~~l~isld~~~~e~~~~i~-~~~~~~~~~~~~~~i~~l~~~g~~v~i~~~--l-~~g~n---~~~~~~  256 (342)
T 2yx0_A          184 RLEEMIKEDKLPTQLYVSITAPDIETYNSVN-IPMIPDGWERILRFLELMRDLPTRTVVRLT--L-VKGEN---MHSPEK  256 (342)
T ss_dssp             HHHHHHHTTCCCSEEEEEECCSSHHHHHHHH-CBSSSCHHHHHHHHHHHHTTCSSEEEEEEE--E-CTTTT---CCCHHH
T ss_pred             HHHHHHhcCCCCCEEEEEccCCCHHHHHHHh-CCCcccHHHHHHHHHHHHHhCCCCEEEEEE--E-ECCcc---HHHHHH
Confidence            567777877  8999988755 33 332221 111123456666777888888987764443  3 12111   122666


Q ss_pred             HHHHHHHCCcCEEEEc--------C----CcCCCcHHHHHHHHHHHHHhCCCccE
Q 012949          308 VAKELHDMGCFEISLG--------D----TIGVGTPGTVVPMLEAVMAVVPVEKL  350 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~--------D----T~G~~~P~~v~~li~~l~~~~p~~~l  350 (452)
                      +++.+.+.|++.|.+.        .    .....+++++.++.+.+++.+|...|
T Consensus       257 l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~~e~~~~~~~~l~~~l~~~~I  311 (342)
T 2yx0_A          257 YAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPSHQDIREFAEALVKHLPGYHI  311 (342)
T ss_dssp             HHHHHHHHCCSEEEEEECC------CCCCGGGSCCHHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHcCCCEEEEEeeeecCCCcccccccCCCCHHHHHHHHHHHHHhccCCce
Confidence            6666777788877641        1    12245678899999999988875444

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=86.08  E-value=3.6  Score=42.26  Aligned_cols=140  Identities=13%  Similarity=-0.037  Sum_probs=82.4

Q ss_pred             HhHHHHHHcCCCEEEEEecC--------ChHHH--hhhcCCCH-HHHHHHHHHHHHHHHhC-------CCcEEEEEEeee
Q 012949          231 QGFEAAIAAGAKEVAIFASA--------SEAFS--KSNINCSI-EDSLVRYRAVAHAAKVL-------SIPVRGYVSCVV  292 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~--------Sd~~~--~~~~~~s~-e~~l~~~~~~v~~Ak~~-------G~~V~~~l~~~~  292 (452)
                      +..++|+++|.|.|.|-..-        |+..+  ...+|-|. ++=.+.+.++++.+|+.       .+.|.+-|+..-
T Consensus       174 ~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~  253 (419)
T 3l5a_A          174 DATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEE  253 (419)
T ss_dssp             HHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCE
T ss_pred             HHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEeccccc
Confidence            34566778999999997542        33322  22356676 77667777777776653       344544444210


Q ss_pred             cCCCCC--CCCHHHHHHHHHHHHH-CCcCEEEEcCCcC----CC---cH-HHHHHHHHHHHHhCC-CccEEEEeCCCcCc
Q 012949          293 GCPVEG--AIPPSKVAYVAKELHD-MGCFEISLGDTIG----VG---TP-GTVVPMLEAVMAVVP-VEKLAVHLHDTYGQ  360 (452)
Q Consensus       293 g~p~~~--r~d~e~l~~~a~~l~~-~Gad~I~L~DT~G----~~---~P-~~v~~li~~l~~~~p-~~~l~vH~Hnd~Gl  360 (452)
                      .  ..+  -.+.+...++++.+.+ +|+|.|.+.....    ..   .+ ..-.++++.+++.++ .++|..=.--   .
T Consensus       254 ~--~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI---~  328 (419)
T 3l5a_A          254 T--RGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGI---N  328 (419)
T ss_dssp             E--ETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSC---C
T ss_pred             c--cCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCC---C
Confidence            0  011  2467889999999999 9999999877432    11   11 112346677777764 2455432210   1


Q ss_pred             HHHHHHHHHHcCCCEE
Q 012949          361 SLPNILISLQMGISTV  376 (452)
Q Consensus       361 A~ANaLaAl~aGa~~V  376 (452)
                      -...+..+++. ||.|
T Consensus       329 t~e~Ae~~L~~-aDlV  343 (419)
T 3l5a_A          329 SPESALDALQH-ADMV  343 (419)
T ss_dssp             SHHHHHHHGGG-CSEE
T ss_pred             CHHHHHHHHHh-CCcH
Confidence            24566777777 6654

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=86.05  E-value=6.1  Score=39.18  Aligned_cols=135  Identities=13%  Similarity=0.067  Sum_probs=86.2

Q ss_pred             HHHHHHcCCCEEEEEe-cCCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFA-SASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~-s~Sd-~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ...+.++|++.|.+.. +++- .+-..- .-.|.++.+..++.+.+.++  .++|.+.+      |... -+++.+.+.+
T Consensus        52 A~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~--~~PviaD~------d~Gy-g~~~~v~~tv  122 (318)
T 1zlp_A           52 AAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP--NLCVVVDG------DTGG-GGPLNVQRFI  122 (318)
T ss_dssp             HHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS--SSEEEEEC------TTCS-SSHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc--CCCEEEeC------CCCC-CCHHHHHHHH
Confidence            3456678999888765 2331 111111 24578888888777666543  45665322      3332 2788999999


Q ss_pred             HHHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCCccEEEEeCCC-cC-----cHHHHHHHHHHcC
Q 012949          310 KELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT-YG-----QSLPNILISLQMG  372 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd-~G-----lA~ANaLaAl~aG  372 (452)
                      +++.++|+..|.|-|..+           +...++..+.|+++++......+-+-.-.| +.     -++.-+.+-.+||
T Consensus       123 ~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~eAG  202 (318)
T 1zlp_A          123 RELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYKEAG  202 (318)
T ss_dssp             HHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHHHcC
Confidence            999999999999999973           333445667788887764222233433333 22     4677788888999


Q ss_pred             CCEE
Q 012949          373 ISTV  376 (452)
Q Consensus       373 a~~V  376 (452)
                      |+.|
T Consensus       203 Ad~i  206 (318)
T 1zlp_A          203 ADAT  206 (318)
T ss_dssp             CSEE
T ss_pred             CCEE
Confidence            9965

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=86.04  E-value=17  Score=35.36  Aligned_cols=101  Identities=15%  Similarity=0.203  Sum_probs=68.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++..++.|++.|-+.-+..|.+     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        37 ~lv~~li~~Gv~gl~v~GtTGE~~-----~Ls~eEr~~v~~~~~~~~~g-rvpViaGv---------g~~~t~~ai~la~  101 (301)
T 1xky_A           37 KLVNYLIDNGTTAIVVGGTTGESP-----TLTSEEKVALYRHVVSVVDK-RVPVIAGT---------GSNNTHASIDLTK  101 (301)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCC-CceEEeCC---------CCCCHHHHHHHHH
Confidence            366777889999998887777753     35777777766666666543 34554211         2345677888999


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+ +=..--.+++.+.+.++.+.+..+
T Consensus       102 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  138 (301)
T 1xky_A          102 KATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP  138 (301)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS
T ss_pred             HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999986554 333334577788888888877654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=86.03  E-value=14  Score=35.73  Aligned_cols=101  Identities=19%  Similarity=0.193  Sum_probs=67.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+-+.-+..|.     ...|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv---------g~~~t~~ai~la~   90 (291)
T 3tak_A           26 KLVEWHIEQGTNSIVAVGTTGEA-----STLSMEEHTQVIKEIIRVANK-RIPIIAGT---------GANSTREAIELTK   90 (291)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECcccccc-----ccCCHHHHHHHHHHHHHHhCC-CCeEEEeC---------CCCCHHHHHHHHH
Confidence            36677788999999887777775     345777777766666666653 24554211         2345678888888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+.+. =..--.+++.+.+.++.+.+..+
T Consensus        91 ~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~  127 (291)
T 3tak_A           91 AAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVE  127 (291)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            8888999865543 33334567778888888777653

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=85.97  E-value=3.9  Score=39.77  Aligned_cols=82  Identities=16%  Similarity=0.176  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+.+.... ++|-+| .+++..-++..+..|-++|
T Consensus        19 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   98 (294)
T 3b4u_A           19 GTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG   98 (294)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999885   8889999999999987643 456554 5667888888999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus        99 adavlv~  105 (294)
T 3b4u_A           99 ARNILLA  105 (294)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977554

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=85.96  E-value=26  Score=33.88  Aligned_cols=123  Identities=17%  Similarity=0.136  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCc-CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH-HHHcCCCEEe
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI-SLQMGISTVD  377 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa-Al~aGa~~VD  377 (452)
                      .+++.+.+.++.+.+.|+..|.|.+-- -.+.++.+.++++.+++.  +  +.+++++  |+-....+. -.++|++.+.
T Consensus        84 ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~--~--~~i~~s~--g~l~~e~l~~L~~ag~~~v~  157 (348)
T 3iix_A           84 MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKM--G--VAVTLSL--GEWPREYYEKWKEAGADRYL  157 (348)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTT--S--CEEEEEC--CCCCHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhc--C--ceEEEec--CCCCHHHHHHHHHhCCCEEe
Confidence            478999999999999999999995432 223347889999999876  3  4455433  333344444 4468999998


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHH---cCCCCC---------CCChhhHHHHHHHHHHH
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLS---GLGVET---------NVDLRKLMLAGDFINKH  429 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~---~~Gi~t---------~iDl~~L~~la~~v~~~  429 (452)
                      .++-+.-.=-+..- .+..+.++++..++   ..|+..         +-+.+.+.++.+++.+.
T Consensus       158 i~let~~~~~~~~i-~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l  220 (348)
T 3iix_A          158 LRHETANPVLHRKL-RPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEH  220 (348)
T ss_dssp             CCCBCSCHHHHHHH-STTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHH
T ss_pred             eeeeeCCHHHHHHh-CCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhc
Confidence            87776521000000 11126676666655   345432         23566777777777764

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=85.92  E-value=7.1  Score=38.81  Aligned_cols=121  Identities=24%  Similarity=0.252  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEEeeec---C-----------------CCC-----C-----CCCH-------HHH
Q 012949          263 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG---C-----------------PVE-----G-----AIPP-------SKV  305 (452)
Q Consensus       263 ~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g---~-----------------p~~-----~-----r~d~-------e~l  305 (452)
                      .++.++..+++++.+++.|-++.+-|.+. |   .                 |-+     +     ..+.       +.+
T Consensus        76 ~d~~i~~~~~~~~~vh~~G~~i~~Ql~H~-Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f  154 (349)
T 3hgj_A           76 SEDHLPGLKELARRIREAGAVPGIQLAHA-GRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAF  154 (349)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCCeEEEEeccC-CccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHH
Confidence            34567888899999999999887667653 1   0                 000     0     0122       244


Q ss_pred             HHHHHHHHHCCcCEEEEc-------------------CCcCCCcH---HHHHHHHHHHHHhCC-CccEEEEeCCC----c
Q 012949          306 AYVAKELHDMGCFEISLG-------------------DTIGVGTP---GTVVPMLEAVMAVVP-VEKLAVHLHDT----Y  358 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~-------------------DT~G~~~P---~~v~~li~~l~~~~p-~~~l~vH~Hnd----~  358 (452)
                      .+.|+.+.++|.|.|.|-                   |-.|...-   .-+.++|+++++.++ +.+|.+-.+-+    -
T Consensus       155 ~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~  234 (349)
T 3hgj_A          155 VEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEG  234 (349)
T ss_dssp             HHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTT
T ss_pred             HHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCC
Confidence            556778889999987774                   33343222   336889999999986 44677765532    1


Q ss_pred             CcHHHH----HHHHHHcCCCEEeecccCCC
Q 012949          359 GQSLPN----ILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       359 GlA~AN----aLaAl~aGa~~VD~Sv~GlG  384 (452)
                      |.-...    +...-++|+++|+.+..+.-
T Consensus       235 g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~  264 (349)
T 3hgj_A          235 GWSLEDTLAFARRLKELGVDLLDCSSGGVV  264 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEecCCcC
Confidence            333333    33334689999999976553

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=85.92  E-value=17  Score=33.79  Aligned_cols=115  Identities=13%  Similarity=0.025  Sum_probs=66.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH-------H
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP-------S  303 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~-------e  303 (452)
                      +.++.+.+.|++.|.+.......       .+ +   ..+.++.+.+++.|+++.....+.......+ .++       +
T Consensus        21 ~~l~~~~~~G~~~vEl~~~~~~~-------~~-~---~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~-~d~~~r~~~~~   88 (290)
T 2qul_A           21 ATAKRIAGLGFDLMEISLGEFHN-------LS-D---AKKRELKAVADDLGLTVMCCIGLKSEYDFAS-PDKSVRDAGTE   88 (290)
T ss_dssp             HHHHHHHHTTCSEEEEESTTGGG-------SC-H---HHHHHHHHHHHHHTCEEEEEEEECGGGCTTC-SCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEecCCccc-------cc-h---hhHHHHHHHHHHcCCceEEecCCCCCCCCCC-CCHHHHHHHHH
Confidence            36788899999999998642111       11 1   3345666788889999875221110001111 122       5


Q ss_pred             HHHHHHHHHHHCCcCEEEEcC--CcCC-------CcHHHHHHHHHHHHHhC-----CCccEEEEeCCC
Q 012949          304 KVAYVAKELHDMGCFEISLGD--TIGV-------GTPGTVVPMLEAVMAVV-----PVEKLAVHLHDT  357 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~D--T~G~-------~~P~~v~~li~~l~~~~-----p~~~l~vH~Hnd  357 (452)
                      .+.+.++.+.++|++.|.+.=  ..|.       ........+++.+++..     -++.|.+|.|+.
T Consensus        89 ~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~  156 (290)
T 2qul_A           89 YVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYALEVVNR  156 (290)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEEEECCCT
T ss_pred             HHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCcc
Confidence            677788888899999887521  0132       33444555555554321     146899999984

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=85.91  E-value=2.9  Score=40.55  Aligned_cols=81  Identities=12%  Similarity=0.010  Sum_probs=67.6

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      + .|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-+| .+|+..-++..+..|-++|
T Consensus        18 g-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~G   96 (291)
T 3a5f_A           18 G-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG   96 (291)
T ss_dssp             S-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             C-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcC
Confidence            5 8999999999999999999999999988   67888888899988876543 455554 4567788888999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus        97 adavlv~  103 (291)
T 3a5f_A           97 VDGLLVI  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=85.88  E-value=0.83  Score=43.10  Aligned_cols=98  Identities=10%  Similarity=0.076  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHH--HHHHHHHHHHhC-CCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGT--VVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~--v~~li~~l~~~~-p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .|...+.+.++.+.++|+|++.+-=+-|...|.-  =.++++.+|+.+ |..++.+|.|-+.--..  .-.+.++||++|
T Consensus        14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~aGad~i   91 (228)
T 3ovp_A           14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAVAGANQY   91 (228)
T ss_dssp             SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHHHTCSEE
T ss_pred             CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHHcCCCEE
Confidence            4677888899999999999555422225543322  134677888876 77789999886432222  345678999988


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..-.    |       ++. .+..++..++.+|.+
T Consensus        92 tvH~----E-------a~~-~~~~~i~~i~~~G~k  114 (228)
T 3ovp_A           92 TFHL----E-------ATE-NPGALIKDIRENGMK  114 (228)
T ss_dssp             EEEG----G-------GCS-CHHHHHHHHHHTTCE
T ss_pred             EEcc----C-------Cch-hHHHHHHHHHHcCCC
Confidence            7632    3       112 355666666655543

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=85.71  E-value=13  Score=36.36  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=69.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     ..|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        40 ~lv~~li~~Gv~gi~v~GttGE~~-----~Lt~~Er~~v~~~~~~~~~g-rvpviaGv---------g~~~t~~ai~la~  104 (304)
T 3l21_A           40 RLANHLVDQGCDGLVVSGTTGESP-----TTTDGEKIELLRAVLEAVGD-RARVIAGA---------GTYDTAHSIRLAK  104 (304)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-TSEEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCccccchh-----hCCHHHHHHHHHHHHHHhCC-CCeEEEeC---------CCCCHHHHHHHHH
Confidence            366777889999998888877753     45777777766666666543 34554211         2345688888999


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus       105 ~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  141 (304)
T 3l21_A          105 ACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATE  141 (304)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCS
T ss_pred             HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999966554 33344567788888888877653

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=85.68  E-value=13  Score=37.51  Aligned_cols=104  Identities=13%  Similarity=0.067  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHh-----CCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc-------------
Q 012949          265 DSLVRYRAVAHAAKV-----LSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI-------------  326 (452)
Q Consensus       265 ~~l~~~~~~v~~Ak~-----~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~-------------  326 (452)
                      +.+..+.+.++.+++     ..++|.+-+.     |+   .+.+.+.++++.+.++|+|.|.+-.|.             
T Consensus       199 ~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~-----p~---~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~  270 (367)
T 3zwt_A          199 AELRRLLTKVLQERDGLRRVHRPAVLVKIA-----PD---LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRS  270 (367)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGCCEEEEEEC-----SC---CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTT
T ss_pred             HHHHHHHHHHHHHHhhccccCCceEEEEeC-----CC---CCHHHHHHHHHHHHHcCCCEEEEeCCCccccccccccccc
Confidence            455555555555432     3566654443     22   356789999999999999999988775             


Q ss_pred             --CCCc----HHHHHHHHHHHHHhCC-CccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          327 --GVGT----PGTVVPMLEAVMAVVP-VEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       327 --G~~~----P~~v~~li~~l~~~~p-~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                        |.++    +....++|+.+++.++ .++|-.=.-=.   -..-++.++++||+.|-..
T Consensus       271 ~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~---s~~da~~~l~~GAd~V~vg  327 (367)
T 3zwt_A          271 ETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVS---SGQDALEKIRAGASLVQLY  327 (367)
T ss_dssp             SSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCC---SHHHHHHHHHHTCSEEEES
T ss_pred             ccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCC---CHHHHHHHHHcCCCEEEEC
Confidence              2122    2334578899998885 34443322111   1366788888999987654

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=85.68  E-value=17  Score=35.11  Aligned_cols=101  Identities=12%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+-+.-+..|.+     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        25 ~lv~~li~~Gv~gl~~~GttGE~~-----~Ls~~Er~~v~~~~~~~~~g-rvpviaGv---------g~~~t~~ai~la~   89 (294)
T 2ehh_A           25 NLIEFHVDNGTDAILVCGTTGESP-----TLTFEEHEKVIEFAVKRAAG-RIKVIAGT---------GGNATHEAVHLTA   89 (294)
T ss_dssp             HHHHHHHTTTCCEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSEEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHH
Confidence            366777889999988887777753     35677777666666665543 34443211         2345677888888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus        90 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  126 (294)
T 2ehh_A           90 HAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVD  126 (294)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            8889999866553 33333467778888888877754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=85.59  E-value=4.7  Score=45.87  Aligned_cols=136  Identities=14%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      .++.+.++|+|.|.|-++.-....+..+|.+...-.+.+.++++.+|+. +++|.+-+.     ++     .+.+.++++
T Consensus       653 ~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-----~~-----~~~~~~~a~  722 (1025)
T 1gte_A          653 LSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-----PN-----VTDIVSIAR  722 (1025)
T ss_dssp             HHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-----SC-----SSCHHHHHH
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-----CC-----hHHHHHHHH
Confidence            5566667899988886542111111123332222345555666776664 777764332     22     234677888


Q ss_pred             HHHHCCcCEEEEcCCc-------------------------CCCcH---HHHHHHHHHHHHhCCCccEEEEeCCCcCcHH
Q 012949          311 ELHDMGCFEISLGDTI-------------------------GVGTP---GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSL  362 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~-------------------------G~~~P---~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~  362 (452)
                      .+.++|+|.|.+..|.                         |+..|   ....++++.+++.+|.++|-.=.-=..+   
T Consensus       723 ~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~---  799 (1025)
T 1gte_A          723 AAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSA---  799 (1025)
T ss_dssp             HHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSH---
T ss_pred             HHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCH---
Confidence            9999999999994321                         11111   1124688888888865666543333222   


Q ss_pred             HHHHHHHHcCCCEEeecc
Q 012949          363 PNILISLQMGISTVDCSV  380 (452)
Q Consensus       363 ANaLaAl~aGa~~VD~Sv  380 (452)
                      ..+..++.+||+.|-..-
T Consensus       800 ~da~~~l~~Ga~~v~vg~  817 (1025)
T 1gte_A          800 ESGLQFLHSGASVLQVCS  817 (1025)
T ss_dssp             HHHHHHHHTTCSEEEESH
T ss_pred             HHHHHHHHcCCCEEEEee
Confidence            456667779999876644

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=85.51  E-value=7.9  Score=35.44  Aligned_cols=171  Identities=14%  Similarity=0.068  Sum_probs=89.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.+.+ .++.+++|....-.+.      .++++.+++. ++..+.  . ..+             ..++.
T Consensus        13 ~~~~~~~~~~~~~~~-~v~~~kv~~~~f~~~G------~~~i~~l~~~~p~~~v~--l-D~k-------------l~dip   69 (216)
T 1q6o_A           13 QTMDSAYETTRLIAE-EVDIIEVGTILCVGEG------VRAVRDLKALYPHKIVL--A-DAK-------------IADAG   69 (216)
T ss_dssp             SSHHHHHHHHHHHGG-GCSEEEECHHHHHHHC------THHHHHHHHHCTTSEEE--E-EEE-------------ECSCH
T ss_pred             CCHHHHHHHHHHhcc-cCCEEEECHHHHHHhC------HHHHHHHHHhCCCCeEE--E-EEE-------------ecccH
Confidence            356777778877764 5788999842100011      1356666653 233321  1 011             00011


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                            ..-++.+.++|++.|.+-....+               +.+.++++.+++.|..+.+.+...+        + .
T Consensus        70 ------~t~~~~~~~~Gad~itvh~~~g~---------------~~l~~~~~~~~~~g~~~~~~ll~~~--------t-~  119 (216)
T 1q6o_A           70 ------KILSRMCFEANADWVTVICCADI---------------NTAKGALDVAKEFNGDVQIELTGYW--------T-W  119 (216)
T ss_dssp             ------HHHHHHHHHTTCSEEEEETTSCH---------------HHHHHHHHHHHHTTCEEEEEECSCC--------C-H
T ss_pred             ------HHHHHHHHhCCCCEEEEeccCCH---------------HHHHHHHHHHHHcCCCceeeeeeCC--------C-h
Confidence                  01345788999999988765432               2244667888888988653332111        1 1


Q ss_pred             HHHHHHHHHHHCCcCEEEE---cCC--cCCC-cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          304 KVAYVAKELHDMGCFEISL---GDT--IGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L---~DT--~G~~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                         .-.+.+.+.|.+.+.+   .++  .|.. .|+.+..+-+.+..   ..+|.+    +-|....|+-.++++||+.|-
T Consensus       120 ---~~~~~l~~~~~~~~vl~~a~~~~~~G~~g~~~~i~~lr~~~~~---~~~i~v----~GGI~~~~~~~~~~aGad~iv  189 (216)
T 1q6o_A          120 ---EQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDM---GFKVTV----TGGLALEDLPLFKGIPIHVFI  189 (216)
T ss_dssp             ---HHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHT---TCEEEE----ESSCCGGGGGGGTTSCCSEEE
T ss_pred             ---hhHHHHHhcCcHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC---CCcEEE----ECCcChhhHHHHHHcCCCEEE
Confidence               1223334557777766   333  2333 46666554333311   223444    234444556778899999765


Q ss_pred             e
Q 012949          378 C  378 (452)
Q Consensus       378 ~  378 (452)
                      +
T Consensus       190 v  190 (216)
T 1q6o_A          190 A  190 (216)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=85.50  E-value=5.7  Score=37.15  Aligned_cols=118  Identities=7%  Similarity=-0.044  Sum_probs=65.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC--CCHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--IPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r--~d~e~l~~~  308 (452)
                      +.++.+.++|.+.|-++..- ..+.       ....-..+.++.+.+++.|+++.. ++..++.++...  ...+.+.+.
T Consensus        19 ~~l~~~~~~G~~~vEl~~~~-~~~~-------~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~~~~~~~~~~~~~~~~   89 (286)
T 3dx5_A           19 DIVQFAYENGFEGIELWGTH-AQNL-------YMQEYETTERELNCLKDKTLEITM-ISDYLDISLSADFEKTIEKCEQL   89 (286)
T ss_dssp             HHHHHHHHTTCCEEEEEHHH-HHHH-------HHHCHHHHHHHHHHTGGGTCCEEE-EECCCCCSTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEcccc-cccc-------cccCHHHHHHHHHHHHHcCCeEEE-EecCCCCCCchhHHHHHHHHHHH
Confidence            47889999999999996421 1000       000113455667788899999863 322222222211  113466778


Q ss_pred             HHHHHHCCcCEEEEc-CCc--CCCcHHHHHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949          309 AKELHDMGCFEISLG-DTI--GVGTPGTVVPMLEAVMAV---V--PVEKLAVHLHDT  357 (452)
Q Consensus       309 a~~l~~~Gad~I~L~-DT~--G~~~P~~v~~li~~l~~~---~--p~~~l~vH~Hnd  357 (452)
                      ++.+.++|++.|.+. -..  +...+.....+++.+++.   .  -++.|.+|.|..
T Consensus        90 i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~  146 (286)
T 3dx5_A           90 AILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPN  146 (286)
T ss_dssp             HHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTT
T ss_pred             HHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCC
Confidence            888888999988762 111  122333334443333322   1  246899999854

>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A

Probab=85.21  E-value=32  Score=35.89  Aligned_cols=251  Identities=13%  Similarity=0.093  Sum_probs=126.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH---HHHhc-c-CCceeEEecchhhhhhhhhhhhhcc
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME---AVRDL-E-GARLPVLTPNLKVILQRSILFQQCH  218 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~---~i~~~-~-~~~l~~l~~~~~~~i~r~~~~~~~~  218 (452)
                      .++..++..| +...+.|++.|-+.|-         .+++++.+   .++.. . .+.+.+.+-+..             
T Consensus       169 ~ltekD~~Di-~~~l~~gvD~I~lsfV---------~saeDv~~~~~~l~~~~~~~i~IiakIEt~e-------------  225 (470)
T 1e0t_A          169 ALAEKDKQDL-IFGCEQGVDFVAASFI---------RKRSDVIEIREHLKAHGGENIHIISKIENQE-------------  225 (470)
T ss_dssp             SSCHHHHHHH-HHHHHHTCSEEEESSC---------CSHHHHHHHHHHHHTTTCTTCEEEEEECSHH-------------
T ss_pred             CCCcCCHHHH-HHHHHcCCCEEEECCC---------CCHHHHHHHHHHHHHhcCCCceEEEEECCHH-------------
Confidence            3666776666 5556679999988542         33444444   33332 1 233333332211             


Q ss_pred             chhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-C
Q 012949          219 ASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-E  297 (452)
Q Consensus       219 ~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-~  297 (452)
                                -.+.++..++. .|.  ++++-.|.-.+    ...++.......++..|+++|.+|...-.+ .-+.. .
T Consensus       226 ----------av~nldeI~~~-sDg--ImVargDLgve----ig~e~v~~~qk~ii~~araaGkpvI~ATQM-LeSMi~~  287 (470)
T 1e0t_A          226 ----------GLNNFDEILEA-SDG--IMVARGDLGVE----IPVEEVIFAQKMMIEKCIRARKVVITATMM-LDSMIKN  287 (470)
T ss_dssp             ----------HHHTHHHHHHH-SSE--EEEEHHHHHHH----SCHHHHHHHHHHHHHHHHHHTCEEEEECC---------
T ss_pred             ----------HHHhHHHHHHH-CCE--EEECchHhhhh----cCHHHHHHHHHHHHHHHHHcCCCEEEechh-hHhhccC
Confidence                      01234444443 564  44444554333    224566666678899999999987521111 00001 1


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-cc----EEEEe--CC-CcCcHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EK----LAVHL--HD-TYGQSLPNILIS  368 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~----l~vH~--Hn-d~GlA~ANaLaA  368 (452)
                      .+.+..++.+++.+..+ |+|.|.|. .|+-.-.|.+..+++..+..+.-. ..    +.-+.  ++ +-..|.|...+|
T Consensus       288 p~PTRAEvsDVanAV~d-G~DavMLSgETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~aia~aa~~~a  366 (470)
T 1e0t_A          288 PRPTDAEAGDVANAILD-GTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETA  366 (470)
T ss_dssp             -CCCHHHHHHHHHHHHH-TCSEEEECCC------CHHHHHHHHHHHHHHHTTCCCCCC---------CHHHHHHHHHHHH
T ss_pred             CCccHHHHhhhhHhhhc-CccEEEecccccCCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhccccchHHHHHHHHHHHH
Confidence            23456788888888776 89999994 566666888877777766654311 10    11011  11 112455555667


Q ss_pred             HHcCCC-EEeecccCCCC------CCCCCCCCCcccHHHHHHHHHc-CCCCC-----CCChhhHHHHHHHHHHHhCCCCC
Q 012949          369 LQMGIS-TVDCSVAGLGG------CPYAKGASGNVATEDVVYMLSG-LGVET-----NVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       369 l~aGa~-~VD~Sv~GlGe------cP~a~graGNaalE~vv~~L~~-~Gi~t-----~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ...+|. +|-.|-.|--.      .|-+|- -..++-+.+...|.- .|+.+     .-|.+.+...+.......|.--+
T Consensus       367 ~~l~a~aIv~~T~sG~ta~~isr~RP~~pI-~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~  445 (470)
T 1e0t_A          367 EKLDAPLIVVATQGGKSARAVRKYFPDATI-LALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHK  445 (470)
T ss_dssp             HHTTCSBEEEECSSSHHHHHHHTTCCSSBE-EEEESCHHHHHHGGGSTTEEEEECSCCCSHHHHHHHHHHHHHHTSSSCT
T ss_pred             HhcCCCEEEEECCChhHHHHHHhhCCCCCE-EEECCCHHHHHHhhhhccceEEEecCCCCHHHHHHHHHHHHHHCCCCCC
Confidence            778887 55566555321      111111 123455677666664 35432     23456665555555555565444


Q ss_pred             CC
Q 012949          436 SK  437 (452)
Q Consensus       436 ~~  437 (452)
                      ..
T Consensus       446 GD  447 (470)
T 1e0t_A          446 GD  447 (470)
T ss_dssp             TC
T ss_pred             cC
Confidence            43

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.09  E-value=2.7  Score=40.74  Aligned_cols=83  Identities=13%  Similarity=0.047  Sum_probs=68.6

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-+| .+|+..-++..+..|-++
T Consensus        15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~   94 (289)
T 2yxg_A           15 NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDV   94 (289)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence            3568899999999999999999999999988   57888888999988877643 556554 556778888899999999


Q ss_pred             CCCEEeec
Q 012949          372 GISTVDCS  379 (452)
Q Consensus       372 Ga~~VD~S  379 (452)
                      |||.+=..
T Consensus        95 Gadavlv~  102 (289)
T 2yxg_A           95 GADAVLSI  102 (289)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977655

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.00  E-value=17  Score=35.04  Aligned_cols=101  Identities=12%  Similarity=0.047  Sum_probs=64.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+-+.-+..|..     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        25 ~lv~~li~~Gv~gl~~~GttGE~~-----~Ls~~Er~~v~~~~~~~~~g-r~pviaGv---------g~~~t~~ai~la~   89 (289)
T 2yxg_A           25 ENINFLIENGVSGIVAVGTTGESP-----TLSHEEHKKVIEKVVDVVNG-RVQVIAGA---------GSNCTEEAIELSV   89 (289)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSEEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEeC---------CCCCHHHHHHHHH
Confidence            366777889999988887777753     35667766666666655543 24443211         2335677778888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus        90 ~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~  126 (289)
T 2yxg_A           90 FAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESIN  126 (289)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            8888888865543 33333466777777777777654

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=84.97  E-value=6.3  Score=36.72  Aligned_cols=121  Identities=9%  Similarity=-0.004  Sum_probs=63.8

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE---EEEEEe--eecCCCCC--CCCHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV---RGYVSC--VVGCPVEG--AIPPSK  304 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V---~~~l~~--~~g~p~~~--r~d~e~  304 (452)
                      .++.+.+.|.+.|.++... +.. -.....+.    +.+.++.+.+++.|+++   .+...+  .++.++..  ....+.
T Consensus        17 ~l~~~~~~G~~~iEl~~~~-~~~-~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~   90 (287)
T 2x7v_A           17 VPQDTVNIGGNSFQIFPHN-ARS-WSAKLPSD----EAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVEL   90 (287)
T ss_dssp             HHHHHHHTTCSEEEECSCC-CSS-SCCCCCCH----HHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCC-ccc-ccccCCCH----HHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHH
Confidence            6788999999999996421 100 00001121    23445667788899984   321111  01111100  011245


Q ss_pred             HHHHHHHHHHCCcCEEEEcC--CcCCCcHHHHHHHHHHHH---HhCCCccEEEEeCCCc
Q 012949          305 VAYVAKELHDMGCFEISLGD--TIGVGTPGTVVPMLEAVM---AVVPVEKLAVHLHDTY  358 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~li~~l~---~~~p~~~l~vH~Hnd~  358 (452)
                      +.+.++.+.++|++.|.+.=  ..+.........+++.++   +...++.|.+|.|+..
T Consensus        91 ~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~  149 (287)
T 2x7v_A           91 LKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQK  149 (287)
T ss_dssp             HHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCC
Confidence            66778888889999887731  112112233344444444   3334578999999764

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=84.90  E-value=9.8  Score=37.34  Aligned_cols=133  Identities=15%  Similarity=0.212  Sum_probs=82.6

Q ss_pred             HHHHHcCCCEEEEEe-cCCh-HHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          234 EAAIAAGAKEVAIFA-SASE-AFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       234 e~a~~~Gi~~V~i~~-s~Sd-~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ..+.++|++.|.+.. +++- .+-..- .-.|.++.+..++.+.+.   ..++|.+.+      |.. --+++.+.+.++
T Consensus        36 ~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~---~~~PviaD~------d~G-yg~~~~v~~~v~  105 (298)
T 3eoo_A           36 KMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNA---TNLPLLVDI------DTG-WGGAFNIARTIR  105 (298)
T ss_dssp             HHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHH---CCSCEEEEC------TTC-SSSHHHHHHHHH
T ss_pred             HHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhh---cCCeEEEEC------CCC-CCCHHHHHHHHH
Confidence            445567999888753 3331 111111 134788888877666554   355654322      332 237888999999


Q ss_pred             HHHHCCcCEEEEcCCcC-----------CCcHHHHHHHHHHHHHhCCCccEEEEeCCC------cCcHHHHHHHHHHcCC
Q 012949          311 ELHDMGCFEISLGDTIG-----------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDT------YGQSLPNILISLQMGI  373 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd------~GlA~ANaLaAl~aGa  373 (452)
                      .+.++|+..|.|-|.++           +...++..+.|++.++...+..+-+-.--|      +--|+.-+.+-.+|||
T Consensus       106 ~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGA  185 (298)
T 3eoo_A          106 SFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVEAGA  185 (298)
T ss_dssp             HHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCC
Confidence            99999999999999986           334556666677666654222333333322      2226677778889999


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      |.|
T Consensus       186 D~i  188 (298)
T 3eoo_A          186 DMI  188 (298)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            966

>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}

Probab=84.76  E-value=2.8  Score=41.24  Aligned_cols=107  Identities=9%  Similarity=0.020  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcC-CCcHHHHH--------HHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHH-HcCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIG-VGTPGTVV--------PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISL-QMGI  373 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~--------~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl-~aGa  373 (452)
                      .+.++++...++|++.|.+.|+.| .++|....        ++++.+++. |+.++-+|+..+     .+.+..+ +.|+
T Consensus       180 ~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g~-----~~~l~~l~~~g~  253 (338)
T 2eja_A          180 TVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRGS-----SSFIDLAVDYRA  253 (338)
T ss_dssp             HHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESSH-----HHHHHHHTTSCC
T ss_pred             HHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCCc-----HHHHHHHHHcCC
Confidence            344566677789999999999754 56887654        445666655 566788888544     3344444 5788


Q ss_pred             CEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhH----HHHHHHHHHHhC
Q 012949          374 STVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKL----MLAGDFINKHLG  431 (452)
Q Consensus       374 ~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L----~~la~~v~~~~g  431 (452)
                      +.++.     ..         .++++++...+ ..-+.-++|...|    .++.+.+.+++.
T Consensus       254 d~~~~-----d~---------~~dl~~~~~~~-~~~l~Gn~dp~~l~gt~e~i~~~v~~~l~  300 (338)
T 2eja_A          254 DALSV-----DW---------SVDIPELFKIY-DKGFQGNLEPAVLYASEEVIEEKTLGLLR  300 (338)
T ss_dssp             SEEEC-----CT---------TSCHHHHHHHC-CSEEECCBCGGGGGSCHHHHHHHHHHHHT
T ss_pred             CEEEe-----CC---------CCCHHHHHHhC-CeEEEECCCHHHhcCCHHHHHHHHHHHHH
Confidence            87754     22         25677666555 3111113444333    234455555553

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=84.74  E-value=8.6  Score=37.23  Aligned_cols=83  Identities=10%  Similarity=0.067  Sum_probs=69.1

Q ss_pred             CCCCHHHHHHHHHHHHH-CCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEE-eCCCcCcHHHHHHHHHHc
Q 012949          298 GAIPPSKVAYVAKELHD-MGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQM  371 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH-~Hnd~GlA~ANaLaAl~a  371 (452)
                      +..|.+.+.++++.+.+ .|++.|.++-|+|=   +++++-.++++.+++... .++|-+| .+|+..-++..+..|-++
T Consensus        19 g~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~   98 (293)
T 1f6k_A           19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhc
Confidence            57899999999999999 99999999999885   888898999999887764 3555554 566778888899999999


Q ss_pred             CCCEEeecc
Q 012949          372 GISTVDCSV  380 (452)
Q Consensus       372 Ga~~VD~Sv  380 (452)
                      |||.+=..-
T Consensus        99 Gadavlv~~  107 (293)
T 1f6k_A           99 GYDCLSAVT  107 (293)
T ss_dssp             TCSEEEEEC
T ss_pred             CCCEEEECC
Confidence            999776653

>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A

Probab=84.64  E-value=5.4  Score=38.94  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEE----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISL----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +.+|+.+++-+.++.++||..+-+    .|-.....|+.++++++.+|+..|++.|.+-..-..+....--++.++..-+
T Consensus        30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe  109 (282)
T 2y7e_A           30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPE  109 (282)
T ss_dssp             CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCC
Confidence            368899999999999999865443    4555677899999999999988888777776644433344444455544555


Q ss_pred             EEeecccCCCCCCCCCC--CCCcccHHHHHHHHHcCCCCCC---CChhhHHHHHHHHHH
Q 012949          375 TVDCSVAGLGGCPYAKG--ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFINK  428 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~g--raGNaalE~vv~~L~~~Gi~t~---iDl~~L~~la~~v~~  428 (452)
                      +...++   |..=|...  ......+++++..+++.|+.+.   +|...|..+..++.+
T Consensus       110 ~asl~~---gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~  165 (282)
T 2y7e_A          110 MATLNA---GTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKK  165 (282)
T ss_dssp             EEEEEC---CCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHT
T ss_pred             EEEecc---cccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHc
Confidence            543332   22001000  1223568999999998898763   899999988887766

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=84.59  E-value=14  Score=32.54  Aligned_cols=68  Identities=21%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      ++.+.+.+.+.|.+......             .++.+.++++..|+.|. .+.+.    +|    +....+.+    ..
T Consensus        62 v~aa~~~~~diV~lS~~~~~-------------~~~~~~~~i~~L~~~g~~~i~v~----vG----G~~~~~~~----~~  116 (161)
T 2yxb_A           62 AMAAVQEDVDVIGVSILNGA-------------HLHLMKRLMAKLRELGADDIPVV----LG----GTIPIPDL----EP  116 (161)
T ss_dssp             HHHHHHTTCSEEEEEESSSC-------------HHHHHHHHHHHHHHTTCTTSCEE----EE----ECCCHHHH----HH
T ss_pred             HHHHHhcCCCEEEEEeechh-------------hHHHHHHHHHHHHhcCCCCCEEE----Ee----CCCchhcH----HH
Confidence            34566677888888765432             24666778888888775 23211    22    22223332    34


Q ss_pred             HHHCCcCEEEEcCC
Q 012949          312 LHDMGCFEISLGDT  325 (452)
Q Consensus       312 l~~~Gad~I~L~DT  325 (452)
                      +.+.|+|.++..|+
T Consensus       117 l~~~G~d~v~~~~~  130 (161)
T 2yxb_A          117 LRSLGIREIFLPGT  130 (161)
T ss_dssp             HHHTTCCEEECTTC
T ss_pred             HHHCCCcEEECCCC
Confidence            56789999887776

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=84.58  E-value=3.2  Score=40.28  Aligned_cols=81  Identities=19%  Similarity=0.112  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+++...+ -+.=-.+|+..-++..+..|-++|||
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~Gad   93 (288)
T 2nuw_A           15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDIL   93 (288)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999985   7888889999999887766 23334667778888899999999999


Q ss_pred             EEeec
Q 012949          375 TVDCS  379 (452)
Q Consensus       375 ~VD~S  379 (452)
                      .+=..
T Consensus        94 avlv~   98 (288)
T 2nuw_A           94 GVSSH   98 (288)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77654

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=84.49  E-value=23  Score=34.44  Aligned_cols=101  Identities=11%  Similarity=0.082  Sum_probs=68.7

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        41 ~lv~~li~~Gv~gl~v~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv---------g~~st~~ai~la~  105 (304)
T 3cpr_A           41 EVAAYLVDKGLDSLVLAGTTGES-----PTTTAAEKLELLKAVREEVGD-RAKLIAGV---------GTNNTRTSVELAE  105 (304)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTT-----TTSCHHHHHHHHHHHHHHHTT-TSEEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEecC---------CCCCHHHHHHHHH
Confidence            36677788999999888777774     345777777766666666543 34443211         2345678888999


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+ +=..--.+++.+.+.++.+.+..+
T Consensus       106 ~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~  142 (304)
T 3cpr_A          106 AAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATE  142 (304)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999996654 333444567888888888887754

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=84.43  E-value=27  Score=33.32  Aligned_cols=123  Identities=8%  Similarity=0.027  Sum_probs=68.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      ..+..++.|++.|.|-....+        .+.++-++++...++.  ..++++.      +   |..  ++    +++++
T Consensus        30 ~a~~~v~~GAdiIDIg~g~~~--------v~~~ee~~rvv~~i~~--~~~~pis------I---DT~--~~----~v~~a   84 (262)
T 1f6y_A           30 WARRQEEGGARALDLNVGPAV--------QDKVSAMEWLVEVTQE--VSNLTLC------L---DST--NI----KAIEA   84 (262)
T ss_dssp             HHHHHHHHTCSEEEEBCC------------CHHHHHHHHHHHHHT--TCCSEEE------E---ECS--CH----HHHHH
T ss_pred             HHHHHHHCCCcEEEECCCCCC--------CChHHHHHHHHHHHHH--hCCCeEE------E---eCC--CH----HHHHH
Confidence            445566789999999864322        2445556655555543  1244443      1   222  23    45555


Q ss_pred             HHHC--CcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc----------HHHHHHHHHHcCCC----E
Q 012949          312 LHDM--GCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ----------SLPNILISLQMGIS----T  375 (452)
Q Consensus       312 l~~~--Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl----------A~ANaLaAl~aGa~----~  375 (452)
                      +.++  |++.|+  |..|.  .+.+.+++..+++ +...-+..|.. ..|.          .....-.|.++|+.    +
T Consensus        85 Al~a~~Ga~iIN--dvs~~--~d~~~~~~~~~a~-~~~~vvlmh~~-~~G~p~t~~~~~~~~~~~~~~a~~~Gi~~~~Ii  158 (262)
T 1f6y_A           85 GLKKCKNRAMIN--STNAE--REKVEKLFPLAVE-HGAALIGLTMN-KTGIPKDSDTRLAFAMELVAAADEFGLPMEDLY  158 (262)
T ss_dssp             HHHHCSSCEEEE--EECSC--HHHHHHHHHHHHH-TTCEEEEESCC-SSCSCSSHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             HHhhCCCCCEEE--ECCCC--cccHHHHHHHHHH-hCCcEEEEcCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCcccEE
Confidence            5665  888775  55555  3444556665544 44433566652 2344          12334457789996    7


Q ss_pred             EeecccCCCC
Q 012949          376 VDCSVAGLGG  385 (452)
Q Consensus       376 VD~Sv~GlGe  385 (452)
                      +|..+.++|.
T Consensus       159 lDPg~g~~g~  168 (262)
T 1f6y_A          159 IDPLILPANV  168 (262)
T ss_dssp             EECCCCCTTT
T ss_pred             EeCCCCcCCC
Confidence            8999865554

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=84.40  E-value=9.9  Score=36.96  Aligned_cols=128  Identities=16%  Similarity=0.081  Sum_probs=76.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHh--hhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCC-CCHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSK--SNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGA-IPPSKVAY  307 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~--~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r-~d~e~l~~  307 (452)
                      ....+-++|++.|.+-.++.-...-  .-...|.++.+...+.+.+.+   ... |.+      ..|+.+. .+++...+
T Consensus        29 sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~---~~~~vva------D~pfgsy~~s~~~a~~   99 (275)
T 1o66_A           29 FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA---KNAMIVS------DLPFGAYQQSKEQAFA   99 (275)
T ss_dssp             HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC---SSSEEEE------ECCTTSSSSCHHHHHH
T ss_pred             HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC---CCCeEEE------ECCCCCccCCHHHHHH
Confidence            4455667999988553333211000  012456888877665554433   222 221      2345443 57899999


Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeC------CCc------------CcHHHHHHHHH
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLH------DTY------------GQSLPNILISL  369 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~H------nd~------------GlA~ANaLaAl  369 (452)
                      .+.++.++||+.|.|-|.      .++.+.|+++.+.  .+|+--|.=      |.+            --++.-+.+-.
T Consensus       100 na~rl~kaGa~aVklEdg------~e~~~~I~al~~a--gIpV~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~  171 (275)
T 1o66_A          100 AAAELMAAGAHMVKLEGG------VWMAETTEFLQMR--GIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHD  171 (275)
T ss_dssp             HHHHHHHTTCSEEEEECS------GGGHHHHHHHHHT--TCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEECCc------HHHHHHHHHHHHc--CCCeEeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHH
Confidence            888999999999999997      3567777777764  223333321      111            23455666777


Q ss_pred             HcCCCEE
Q 012949          370 QMGISTV  376 (452)
Q Consensus       370 ~aGa~~V  376 (452)
                      +|||+.|
T Consensus       172 eAGA~~i  178 (275)
T 1o66_A          172 DAGAAVV  178 (275)
T ss_dssp             HTTCSEE
T ss_pred             HcCCcEE
Confidence            8999965

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=84.37  E-value=3.8  Score=39.62  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=68.9

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      .+..|.+-+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+++...+ -+.=-.+++..-++..+..|-++||
T Consensus        13 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~Ga   91 (286)
T 2r91_A           13 GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGA   91 (286)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcCC
Confidence            35688999999999999999999999999885   7889999999999988866 2333466778888889999999999


Q ss_pred             CEEeec
Q 012949          374 STVDCS  379 (452)
Q Consensus       374 ~~VD~S  379 (452)
                      |.+=..
T Consensus        92 davlv~   97 (286)
T 2r91_A           92 EAVASL   97 (286)
T ss_dssp             SEEEEC
T ss_pred             CEEEEc
Confidence            977654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=84.32  E-value=9.7  Score=39.75  Aligned_cols=131  Identities=17%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++-.+.++.|.++|++.|++..... .  +  ....+.++.+++. ++..+  ++.+..                     
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~g-~--~--~~~~~~v~~i~~~~p~~~V--i~g~v~---------------------  279 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAHG-H--S--KGVIERVRWVKQTFPDVQV--IGGNIA---------------------  279 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCC-S--B--HHHHHHHHHHHHHCTTSEE--EEEEEC---------------------
T ss_pred             cchHHHHHHHhhcccceEEecccCC-c--c--hhHHHHHHHHHHHCCCceE--EEeeeC---------------------
Confidence            3456778899999999999975321 1  0  1123444555432 33332  222111                     


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecC-Ch--HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASA-SE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~-Sd--~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                        +.++++.+.++|+|.|.+-... +.  .+....++..   .+..+.++.+.+++.+++|.+         +.+-.+++
T Consensus       280 --t~e~a~~l~~aGaD~I~vg~g~Gs~~~t~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~  345 (490)
T 4avf_A          280 --TAEAAKALAEAGADAVKVGIGPGSICTTRIVAGVGVP---QISAIANVAAALEGTGVPLIA---------DGGIRFSG  345 (490)
T ss_dssp             --SHHHHHHHHHTTCSEEEECSSCSTTCHHHHHTCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHH
T ss_pred             --cHHHHHHHHHcCCCEEEECCCCCcCCCccccCCCCcc---HHHHHHHHHHHhccCCCcEEE---------eCCCCCHH
Confidence              2357888999999999973211 11  1111112222   345556677777778888752         23445666


Q ss_pred             HHHHHHHHHHHCCcCEEEEcC
Q 012949          304 KVAYVAKELHDMGCFEISLGD  324 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~D  324 (452)
                      .+.+..    ++||+.+.+.=
T Consensus       346 di~kal----~~GAd~V~vGs  362 (490)
T 4avf_A          346 DLAKAM----VAGAYCVMMGS  362 (490)
T ss_dssp             HHHHHH----HHTCSEEEECT
T ss_pred             HHHHHH----HcCCCeeeecH
Confidence            666543    45999888864

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=84.31  E-value=17  Score=35.95  Aligned_cols=100  Identities=17%  Similarity=0.089  Sum_probs=65.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++..++.|++.|-+.-+..|..     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++.
T Consensus        60 lv~~li~~Gv~Gl~v~GtTGE~~-----~Ls~eEr~~vi~~~ve~~~g-rvpViaGv---------g~~st~eai~la~~  124 (332)
T 2r8w_A           60 LIARLDAAEVDSVGILGSTGIYM-----YLTREERRRAIEAAATILRG-RRTLMAGI---------GALRTDEAVALAKD  124 (332)
T ss_dssp             HHHHHHHHTCSEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSEEEEEE---------CCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHHH
Confidence            56677788999988887777753     35677777666666665543 34454222         22356777888888


Q ss_pred             HHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus       125 A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~  160 (332)
T 2r8w_A          125 AEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATA  160 (332)
T ss_dssp             HHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             HHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            888898866553 23333466778888888777654

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=84.29  E-value=2.1  Score=41.56  Aligned_cols=82  Identities=9%  Similarity=-0.039  Sum_probs=67.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-+| .+++..-++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (292)
T 2ojp_A           17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   67888888999988876543 456554 5567777888888888999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus        97 adavlv~  103 (292)
T 2ojp_A           97 IVGCLTV  103 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=84.14  E-value=5.7  Score=41.75  Aligned_cols=68  Identities=15%  Similarity=0.100  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      ..+.++.+.++|++.|.+-.+-|  .+..+.++|+.+++.+|+.++.+-.=.    ....+..++++||+.|.+
T Consensus       257 ~~era~aLveaGvd~I~Id~a~g--~~~~v~~~i~~i~~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~v  324 (511)
T 3usb_A          257 AMTRIDALVKASVDAIVLDTAHG--HSQGVIDKVKEVRAKYPSLNIIAGNVA----TAEATKALIEAGANVVKV  324 (511)
T ss_dssp             HHHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEE
T ss_pred             hHHHHHHHHhhccceEEeccccc--chhhhhhHHHHHHHhCCCceEEeeeec----cHHHHHHHHHhCCCEEEE
Confidence            34567788999999999965543  467888999999999987666543211    345678899999999996

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=84.04  E-value=6  Score=38.79  Aligned_cols=135  Identities=12%  Similarity=0.027  Sum_probs=77.8

Q ss_pred             HHHHHHcCCCEEEEE-ecCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIF-ASASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~-~s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ...+.++|++.|.+. .+++-.+-..- ...|.++.+..++.+.+.   ..++|.+-+      |.. --+++.+.+.++
T Consensus        32 A~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~---~~~PviaD~------d~G-yg~~~~v~~~v~  101 (295)
T 1s2w_A           32 ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDA---SDVPILLDA------DTG-YGNFNNARRLVR  101 (295)
T ss_dssp             HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHT---CSSCEEEEC------CSS-CSSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEecC------CCC-CCCHHHHHHHHH
Confidence            344556799988776 33331111111 123556666555444432   345654333      222 225678889999


Q ss_pred             HHHHCCcCEEEEcCCc--------C----CCcH-HHHHHHHHHHHHhCCCccEEEEeCCCc-------CcHHHHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTI--------G----VGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTY-------GQSLPNILISLQ  370 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~--------G----~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~-------GlA~ANaLaAl~  370 (452)
                      .+.++|+..|.|-|..        |    .+.| ++..+.|+++++......+-+-.-.|-       --++.-+.+-.+
T Consensus       102 ~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~e  181 (295)
T 1s2w_A          102 KLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYRN  181 (295)
T ss_dssp             HHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHHH
Confidence            9999999999999997        3    2444 456677777777642222333333221       246777888889


Q ss_pred             cCCCEEe
Q 012949          371 MGISTVD  377 (452)
Q Consensus       371 aGa~~VD  377 (452)
                      |||+.|=
T Consensus       182 AGAd~i~  188 (295)
T 1s2w_A          182 AGADAIL  188 (295)
T ss_dssp             TTCSEEE
T ss_pred             cCCCEEE
Confidence            9999653

>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A

Probab=84.01  E-value=31  Score=36.38  Aligned_cols=258  Identities=14%  Similarity=0.097  Sum_probs=139.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++..++..|.+.-.+.|+|+|-+.|-.++      .|-.++.+.+... ....+.+.+-+..                 
T Consensus       204 ~lTekD~~Dl~~f~~~~~vD~Ia~SFVr~a------~Dv~~~r~~l~~~~~~~~iiaKIE~~e-----------------  260 (511)
T 3gg8_A          204 VIGEKDKHDILNFGIPMGCNFIAASFVQSA------DDVRYIRGLLGPRGRHIRIIPKIENVE-----------------  260 (511)
T ss_dssp             SSCHHHHHHHHHTTTTTTCCEEEETTCCSH------HHHHHHHHHHTGGGTTCEEEEEECSHH-----------------
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCCeEEEEECCHH-----------------
Confidence            367788888867788899999988653222      1333333344332 2334433332221                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d  301 (452)
                            -.+.++..++. .|.|.|.  -.|.-.+    ...++.....+++++.|+++|.+|...-.+ .-+. ...+.+
T Consensus       261 ------av~nldeIl~~-sDgimVa--RGDLgve----i~~e~v~~~qk~ii~~~~~~gkpvi~ATQm-LeSMi~~p~PT  326 (511)
T 3gg8_A          261 ------GLVNFDEILAE-ADGIMIA--RGDLGME----IPPEKVFLAQKMMIAKCNVVGKPVITATQM-LESMIKNPRPT  326 (511)
T ss_dssp             ------HHHTHHHHHHH-CSCEEEE--HHHHHHH----SCHHHHHHHHHHHHHHHHHTTCCEEEESSS-SGGGGTCSSCC
T ss_pred             ------HHHhHHHHHHh-CCeEEEe--cchhcCc----CCHHHHHHHHHHHHHHHHHcCCCeEEehHH-HHHhhcCCCcc
Confidence                  01234444443 3666654  2233222    235666777788999999999997521111 1011 112445


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCC-ccE--EE-----EeCC--Cc--CcHHHHHHHH
Q 012949          302 PSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPV-EKL--AV-----HLHD--TY--GQSLPNILIS  368 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~-~~l--~v-----H~Hn--d~--GlA~ANaLaA  368 (452)
                      ..++.+++.+..+ |+|.|.|. .|+-.-.|.+..+++..+..+.-. ...  .+     +.+.  +.  ..|.|...+|
T Consensus       327 RAEvsDVAnAV~d-GaDavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A  405 (511)
T 3gg8_A          327 RAEAADVANAVLD-GTDCVMLSGETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETA  405 (511)
T ss_dssp             HHHHHHHHHHHHH-TCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCEEEecccccCCCCHHHHHHHHHHHHHHHHhchhHHHHHhhhhhcccCCCCHHHHHHHHHHHHH
Confidence            6788888888776 89999994 666667898887777776654311 000  00     1111  11  2445555667


Q ss_pred             HHcCCC-EEeecccCCCC------CCCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCC
Q 012949          369 LQMGIS-TVDCSVAGLGG------CPYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       369 l~aGa~-~VD~Sv~GlGe------cP~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ...+|. +|-.|-.|--.      -|-+|- -..++-+.+...|.-+ |+.+     .-|.+.+...+.......|.--+
T Consensus       406 ~~l~a~aIv~~T~SG~tA~~iSr~RP~~PI-ia~T~~~~~~r~l~L~~GV~p~~~~~~~~~d~~~~~a~~~~~~~g~~~~  484 (511)
T 3gg8_A          406 ECVNAAIILALTETGQTARLIAKYRPMQPI-LALSASESTIKHLQVIRGVTTMQVPSFQGTDHVIRNAIVVAKERELVTE  484 (511)
T ss_dssp             HHHTCSEEEEECSSSHHHHHHHHTCCSSCE-EEEESCHHHHHHGGGSTTEEEEECCC--CHHHHHHHHHHHHHHTTSCCT
T ss_pred             HhcCCCEEEEECCCchHHHHHHhhCCCCCE-EEEcCCHHHHHHhhccCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCCCC
Confidence            788888 56667776311      011111 1234557777666643 5532     23455555555555555665555


Q ss_pred             CCccc
Q 012949          436 SKTAI  440 (452)
Q Consensus       436 ~~~pi  440 (452)
                      ...-+
T Consensus       485 GD~vV  489 (511)
T 3gg8_A          485 GESIV  489 (511)
T ss_dssp             TCEEE
T ss_pred             cCEEE
Confidence            44444

>3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400}

Probab=83.97  E-value=9.2  Score=37.77  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=89.3

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-C
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-G  372 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-G  372 (452)
                      +.+|+.+++-+.++.++||..|-|     .|-.....|+.+++++..+|++.|. .|.+-..-..++....=++.+.. .
T Consensus        28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-iI~~TTgg~~~~~~eerla~~~~~~  106 (311)
T 3e49_A           28 PVTPDEVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTDA-VINLTTGGSPHMTVEERLRPATHYM  106 (311)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCCC-EEEECSCSCTTSCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-EEEECCCCCCCCCHHHHHHHHHhcC
Confidence            468899999999999999876655     3556688899999999999998764 56666666677777777777643 5


Q ss_pred             CCEEeecccC--CCCCCCCC------------------C---CCCcccHHHHHHHHHcCCCCCC---CChhhHHHHHHHH
Q 012949          373 ISTVDCSVAG--LGGCPYAK------------------G---ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFI  426 (452)
Q Consensus       373 a~~VD~Sv~G--lGecP~a~------------------g---raGNaalE~vv~~L~~~Gi~t~---iDl~~L~~la~~v  426 (452)
                      -++.....+-  +|..|.+.                  .   ......+++++..++..|+.+.   +|...|..+..++
T Consensus       107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~  186 (311)
T 3e49_A          107 PELASLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFKNTFADIEFILKTCGGNGTRFEFECYDTSHLYNLAHFV  186 (311)
T ss_dssp             CSEEEEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHH
T ss_pred             CCeeeecCCCcccccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeeEEEEECHHHHHHHHHHH
Confidence            5655333222  33212110                  0   0112358888888888898753   8889999888877


Q ss_pred             HH
Q 012949          427 NK  428 (452)
Q Consensus       427 ~~  428 (452)
                      .+
T Consensus       187 ~~  188 (311)
T 3e49_A          187 DR  188 (311)
T ss_dssp             HT
T ss_pred             Hc
Confidence            66

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=83.96  E-value=12  Score=36.96  Aligned_cols=117  Identities=18%  Similarity=0.095  Sum_probs=68.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCC------CCCCH-
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVE------GAIPP-  302 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~------~r~d~-  302 (452)
                      .++.++++|+..||+.+-+.+.     -+.   ..++.+.++++.||++|++|-..+=+.  +..|-.      -..+. 
T Consensus        32 ~~~ilk~~G~N~VRi~~w~~P~-----~g~---~~~~~~~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~~  103 (332)
T 1hjs_A           32 LENILAANGVNTVRQRVWVNPA-----DGN---YNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDID  103 (332)
T ss_dssp             HHHHHHHTTCCEEEEEECSSCT-----TCT---TSHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSHH
T ss_pred             HHHHHHHCCCCEEEEeeeeCCC-----CCc---CCHHHHHHHHHHHHHCCCEEEEEeccCCCcCCccccCCccccccchH
Confidence            6677789999999997644332     011   125667788899999999987554220  101110      00111 


Q ss_pred             -------HHHHHHHHHHHHCC--cCEEEEcC--CcCCC-------cHHHHHHH----HHHHHHhC--CCccEEEEeCC
Q 012949          303 -------SKVAYVAKELHDMG--CFEISLGD--TIGVG-------TPGTVVPM----LEAVMAVV--PVEKLAVHLHD  356 (452)
Q Consensus       303 -------e~l~~~a~~l~~~G--ad~I~L~D--T~G~~-------~P~~v~~l----i~~l~~~~--p~~~l~vH~Hn  356 (452)
                             ++..++++.+.+.|  ++.+.+.-  +.|.+       ......++    ++.+|+..  |..++.+|..+
T Consensus       104 ~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~  181 (332)
T 1hjs_A          104 NLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDN  181 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence                   23345667777777  45554433  12222       33555444    44566666  77778888876

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=83.88  E-value=3.3  Score=40.23  Aligned_cols=81  Identities=17%  Similarity=0.120  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+++...+ -+.=-.+++..-++..+..|-++||+
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~~Gad   93 (293)
T 1w3i_A           15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFDIV   93 (293)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGGSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999885   7888999999999988765 23334667778888888889999999


Q ss_pred             EEeec
Q 012949          375 TVDCS  379 (452)
Q Consensus       375 ~VD~S  379 (452)
                      .+=..
T Consensus        94 avlv~   98 (293)
T 1w3i_A           94 GIASY   98 (293)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            77554

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=83.78  E-value=4  Score=40.72  Aligned_cols=83  Identities=10%  Similarity=-0.001  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+++... .++|-++. +++..-++..+..|-++|
T Consensus        47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  126 (343)
T 2v9d_A           47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG  126 (343)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999985   788888899998887764 35666654 577788888999999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      ||.|=..-
T Consensus       127 adavlv~~  134 (343)
T 2v9d_A          127 ADGIVVIN  134 (343)
T ss_dssp             CSEEEEEC
T ss_pred             CCEEEECC
Confidence            99776553

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=83.77  E-value=16  Score=35.22  Aligned_cols=101  Identities=16%  Similarity=0.079  Sum_probs=65.4

Q ss_pred             HhHHHHHH-cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIA-AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~-~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++..++ .|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...+++
T Consensus        28 ~lv~~li~~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv---------g~~~t~~ai~la   92 (293)
T 1f6k_A           28 QIIRHNIDKMKVDGLYVGGSTGEN-----FMLSTEEKKEIFRIAKDEAKD-QIALIAQV---------GSVNLKEAVELG   92 (293)
T ss_dssp             HHHHHHHHTSCCSEEEESSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSEEEEEC---------CCSCHHHHHHHH
T ss_pred             HHHHHHHhhCCCcEEEeCccccch-----hhCCHHHHHHHHHHHHHHhCC-CCeEEEec---------CCCCHHHHHHHH
Confidence            36677788 999998887776664     335677777666666665543 34443211         234567778888


Q ss_pred             HHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          310 KELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       310 ~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus        93 ~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~  130 (293)
T 1f6k_A           93 KYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG  130 (293)
T ss_dssp             HHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            88888888865543 33333466777777777777654

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=83.75  E-value=11  Score=37.90  Aligned_cols=127  Identities=13%  Similarity=0.194  Sum_probs=68.5

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.+.++|++.|++.+....   |  ....+.++.+++..+..  +++-+..                       +.
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~---~--~~~~~~i~~i~~~~~~~--Vivg~v~-----------------------t~  156 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGH---S--LNIIRTLKEIKSKMNID--VIVGNVV-----------------------TE  156 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCS---B--HHHHHHHHHHHHHCCCE--EEEEEEC-----------------------SH
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCC---c--HHHHHHHHHHHHhcCCc--EEEccCC-----------------------CH
Confidence            67788999999999998643210   1  01112333333322333  3221111                       23


Q ss_pred             HhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                      +.++.+.++|+|.|.+....-..   ......+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.+
T Consensus       157 e~A~~l~~aGaD~I~VG~~~Gs~~~tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIA---------~GGI~~~~di~k  224 (361)
T 3khj_A          157 EATKELIENGADGIKVGIGPGSICTTRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIGK  224 (361)
T ss_dssp             HHHHHHHHTTCSEEEECSSCCTTCCHHHHTCBCCC---HHHHHHHHHHHHHHHTCCEEE---------ESCCCSHHHHHH
T ss_pred             HHHHHHHHcCcCEEEEecCCCcCCCcccccCCCCC---cHHHHHHHHHHHhhcCCeEEE---------ECCCCCHHHHHH
Confidence            47888999999999984211111   111112222   234445555666667888752         234445666554


Q ss_pred             HHHHHHHCCcCEEEEc
Q 012949          308 VAKELHDMGCFEISLG  323 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~  323 (452)
                      .    ..+||+.|.+.
T Consensus       225 a----la~GAd~V~vG  236 (361)
T 3khj_A          225 A----LAVGASSVMIG  236 (361)
T ss_dssp             H----HHHTCSEEEES
T ss_pred             H----HHcCCCEEEEC
Confidence            3    34699988875

>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}

Probab=83.69  E-value=21  Score=37.70  Aligned_cols=258  Identities=13%  Similarity=0.099  Sum_probs=137.5

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++..++..|.+...+.|+|.|-+.|-.++      .|..++.+.+... ....+.+.+-+..                 
T Consensus       213 ~lTekD~~dl~~f~~~~~vD~Ia~SFVr~a------~Dv~~~r~~l~~~g~~i~IIAKIE~~e-----------------  269 (520)
T 3khd_A          213 IISEKDKNDILNFAIPMGCNFIAASFIQSA------DDVRLIRNLLGPRGRHIKIIPKIENIE-----------------  269 (520)
T ss_dssp             SSCHHHHHHHHHTHHHHTCCEEEETTCCSH------HHHHHHHHHHTTTTTTSEEEEEECSHH-----------------
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCcEEEEECCHH-----------------
Confidence            367788888878888999999998653222      1223333333322 1233333332221                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIP  301 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d  301 (452)
                            -++.++..++. .|.|.|.  -.|.-.    -...++....-+++++.|+++|.+|.+.-.+ .-+. ...+.+
T Consensus       270 ------av~nldeIl~~-sDGIMVA--RGDLgv----Ei~~e~vp~~Qk~iI~~c~~aGKPVi~ATQM-LeSMi~~p~PT  335 (520)
T 3khd_A          270 ------GIIHFDKILAE-SDGIMIA--RGDLGM----EISPEKVFLAQKLMISKCNLQGKPIITATQM-LESMTKNPRPT  335 (520)
T ss_dssp             ------HHHTHHHHHHH-SSCEEEC--HHHHTT----TSCGGGHHHHHHHHHHHHHHHTCCEEECCCC-CGGGGTCSSCC
T ss_pred             ------HHHhHHHHHHh-CCcEEEc--cccccc----cCCHHHHHHHHHHHHHHHHHcCCCeEEeehh-hHHHhcCCCcc
Confidence                  01234444443 3655553  223211    1223455555678999999999987521111 1011 112345


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC-CccE--EE-----Ee--CCCc--CcHHHHHHHH
Q 012949          302 PSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP-VEKL--AV-----HL--HDTY--GQSLPNILIS  368 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p-~~~l--~v-----H~--Hnd~--GlA~ANaLaA  368 (452)
                      ..++.+++.+..+ |+|.|.|. .|+-.-.|-+..+++..+..+.- ....  .+     +.  ..+.  -.|.|...+|
T Consensus       336 RAEvsDVanAVld-GaDavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A  414 (520)
T 3khd_A          336 RAEVTDVANAVLD-GTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETA  414 (520)
T ss_dssp             HHHHHHHHHHHHH-TCSEEEESHHHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-CCCEEEecccccCCcCHHHHHHHHHHHHHHHHhhhhhhhhHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence            6788888888776 89999995 56666789888777777765431 1000  00     00  1111  2344455566


Q ss_pred             HHcCCC-EEeecccCCCC------CCCCCCCCCcccHHHHHHHHHcC-CCCC-----CCChhhHHHHHHHHHHHhCCCCC
Q 012949          369 LQMGIS-TVDCSVAGLGG------CPYAKGASGNVATEDVVYMLSGL-GVET-----NVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       369 l~aGa~-~VD~Sv~GlGe------cP~a~graGNaalE~vv~~L~~~-Gi~t-----~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ...+|. +|-.|-.|--.      .|-+|- -..++-+.+...|.-+ |+.+     .-|.+.+.+.+.......|.--+
T Consensus       415 ~~l~a~aIv~~T~SG~TA~~vSr~RP~~PI-ia~T~~~~~~r~l~L~~GV~p~~~~~~~~~d~~~~~a~~~~~~~g~~~~  493 (520)
T 3khd_A          415 ESIQASLIIALTETGYTARLIAKYKPSCTI-LALSASDSTVKCLNVHRGVTCIKVGSFQGTDIVIRNAIEIAKQRNMAKV  493 (520)
T ss_dssp             HHTTCSEEEEECSSSHHHHHHHHTCCSSEE-EEEESCHHHHHHGGGSTTEEEEECCSCCCHHHHHHHHHHHHHHTTSSCT
T ss_pred             HhcCCCEEEEECCCcHHHHHHHhcCCCCCE-EEEcCCHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCCCC
Confidence            678888 55666665321      111111 1235557777766643 5532     23566666555555555665545


Q ss_pred             CCccc
Q 012949          436 SKTAI  440 (452)
Q Consensus       436 ~~~pi  440 (452)
                      ...-+
T Consensus       494 GD~vV  498 (520)
T 3khd_A          494 GDSVI  498 (520)
T ss_dssp             TCEEE
T ss_pred             cCEEE
Confidence            44433

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=83.62  E-value=5.3  Score=41.75  Aligned_cols=70  Identities=14%  Similarity=0.114  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      ..+.++.+.++|++.|.| |+. ...|....++++.+++.+|+.++....=    ....-+..+.++||+.|++++
T Consensus       256 ~~~~a~~~~~aG~d~v~i-~~~-~G~~~~~~~~i~~i~~~~~~~pvi~~~v----~t~~~a~~l~~aGad~I~vg~  325 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVL-DSS-QGNSVYQIAMVHYIKQKYPHLQVIGGNV----VTAAQAKNLIDAGVDGLRVGM  325 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEE-CCS-CCCSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEECS
T ss_pred             hHHHHHHHHHcCCCEEEe-ecc-CCcchhHHHHHHHHHHhCCCCceEeccc----chHHHHHHHHHcCCCEEEECC
Confidence            456778889999999998 332 2356677899999999997777765311    335567888999999999955

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=83.60  E-value=19  Score=35.24  Aligned_cols=101  Identities=15%  Similarity=0.058  Sum_probs=67.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        49 ~lv~~li~~Gv~Gi~v~GtTGE~-----~~Ls~~Er~~v~~~~v~~~~g-rvpViaGv---------g~~~t~~ai~la~  113 (315)
T 3na8_A           49 RSIERLIDGGVHAIAPLGSTGEG-----AYLSDPEWDEVVDFTLKTVAH-RVPTIVSV---------SDLTTAKTVRRAQ  113 (315)
T ss_dssp             HHHHHHHHTTCSEEECSSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSCBEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCCCHHHHHHHHH
Confidence            36677788999998888777764     345677777666666666543 24444211         2345677888888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus       114 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  150 (315)
T 3na8_A          114 FAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIG  150 (315)
T ss_dssp             HHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            8888998866554 33344567778888888777764

>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*

Probab=83.58  E-value=47  Score=34.90  Aligned_cols=257  Identities=16%  Similarity=0.095  Sum_probs=136.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      ++..++..| +...+.|++.|-+.|-.++      .|..++.+.+... ..+.+.+.+-+..                  
T Consensus       190 ltekD~~dl-~~~~~~~vD~i~~sfVr~a------~dv~~~r~~l~~~~~~i~IiaKIE~~e------------------  244 (499)
T 3hqn_D          190 VSAKDRVDL-QFGVEQGVDMIFASFIRSA------EQVGDVRKALGPKGRDIMIICKIENHQ------------------  244 (499)
T ss_dssp             SCHHHHHHH-HHHHHTTCSEEEETTCCSH------HHHHHHHHHHCGGGTTSEEEEEECSHH------------------
T ss_pred             CCHHHHHHH-HHHHHcCCCEEEecCCCCH------HHHHHHHHHHHhcCCCCeEEEEECCHH------------------
Confidence            566676666 6777899999998653222      1223333333321 2334433332221                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCCH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPP  302 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d~  302 (452)
                           -.+.++..++. .|.|.|.  -.|.-.+    ...++....-+++++.|+++|.+|...-.+ .-+. ...+.+.
T Consensus       245 -----av~nldeIl~~-sDgImVa--RGDLgvE----i~~e~vp~~Qk~iI~~c~~agkpVi~ATQm-LeSMi~~p~PTR  311 (499)
T 3hqn_D          245 -----GVQNIDSIIEE-SDGIMVA--RGDLGVE----IPAEKVVVAQKILISKCNVAGKPVICATQM-LESMTYNPRPTR  311 (499)
T ss_dssp             -----HHHTHHHHHHH-SSEEEEE--HHHHHHH----SCHHHHHHHHHHHHHHHHHHTCCEEEESSS-SGGGGTSSSCCH
T ss_pred             -----HHHhHHHHHHh-CCcEEEc--cccccCc----CCHHHHHHHHHHHHHHHHHcCCCeEEeehh-HHHhccCCCccH
Confidence                 11244554544 5766654  2343222    235666777788999999999997521111 1011 1123456


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhC---CCccEEE---Ee----CCCc--CcHHHHHHHHH
Q 012949          303 SKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVV---PVEKLAV---HL----HDTY--GQSLPNILISL  369 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~---p~~~l~v---H~----Hnd~--GlA~ANaLaAl  369 (452)
                      .++.+++.+..+ |+|.|.|. .|.-.-.|-+..+++..+..+.   ..-.-.+   +.    ..+.  -.|.|...+|.
T Consensus       312 AEvsDVanaV~d-G~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~  390 (499)
T 3hqn_D          312 AEVSDVANAVFN-GADCVMLSGETAKGKYPNEVVQYMARICLEAQSALNEYVFFNSIKKLQHIPMSADEAVCSSAVNSVY  390 (499)
T ss_dssp             HHHHHHHHHHHH-TCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCcEEEEeccccCCCCHHHHHHHHHHHHHHHHhcchhHHHHhhhhhccCCCCCHHHHHHHHHHHHHH
Confidence            788888887776 89999994 5666668988777777666543   1100000   01    1121  23444555666


Q ss_pred             HcCCC-EEeecccCCCC------CCCCCCCCCcccHHHHHHHHHcC-CCCCC-C---------ChhhHHHHHHHHHHHhC
Q 012949          370 QMGIS-TVDCSVAGLGG------CPYAKGASGNVATEDVVYMLSGL-GVETN-V---------DLRKLMLAGDFINKHLG  431 (452)
Q Consensus       370 ~aGa~-~VD~Sv~GlGe------cP~a~graGNaalE~vv~~L~~~-Gi~t~-i---------Dl~~L~~la~~v~~~~g  431 (452)
                      ..+|. +|-.|-.|--.      .|-+|- -..++-+.+...|.-+ |+.+- +         |.+.+.+.+.......|
T Consensus       391 ~l~a~aIv~~T~SG~tA~~isr~RP~~pI-ia~T~~~~~~r~l~L~~GV~p~~~~~~~~~~~~~~d~~~~~a~~~~~~~g  469 (499)
T 3hqn_D          391 ETKAKAMVVLSNTGRSARLVAKYRPNCPI-VCVTTRLQTCRQLNITQGVESVFFDADKLGHDEGKEHRVAAGVEFAKSKG  469 (499)
T ss_dssp             HHTCSEEEEECSSSHHHHHHHHTCCSSCE-EEEESCHHHHHHGGGSTTEEEEECCHHHHCCCTTCHHHHHHHHHHHHHTT
T ss_pred             hcCCCEEEEECCCcHHHHHHHhhCCCCCE-EEEcCCHHHHHHhhccCCeEEEEeccccccccCCHHHHHHHHHHHHHHcC
Confidence            78888 55666666311      122221 1235567777777653 65431 1         44555555555555566


Q ss_pred             CCCCCCcccc
Q 012949          432 RPSGSKTAIA  441 (452)
Q Consensus       432 ~~~p~~~pi~  441 (452)
                      .--+...-++
T Consensus       470 ~~~~GD~vVv  479 (499)
T 3hqn_D          470 YVQTGDYCVV  479 (499)
T ss_dssp             SCCTTCEEEE
T ss_pred             CCCCcCEEEE
Confidence            5444444333

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=83.57  E-value=4.3  Score=43.71  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC---------CCC-----CCCCH------------HHHHHHHHHHHHCC
Q 012949          263 IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------PVE-----GAIPP------------SKVAYVAKELHDMG  316 (452)
Q Consensus       263 ~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~---------p~~-----~r~d~------------e~l~~~a~~l~~~G  316 (452)
                      .++.++..+++++.+++.|-++.+-|... |-         |-+     ....|            +.+.+.|+.+.++|
T Consensus        76 ~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~-Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aG  154 (671)
T 1ps9_A           76 DASQIPHHRTITEAVHQEGGKIALQILHT-GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAG  154 (671)
T ss_dssp             SGGGHHHHHHHHHHHHHTTCCEEEEECCC-GGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEeccC-CcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            34567777888888999998887667642 10         000     01122            46677888889999


Q ss_pred             cCEEEEc-------------------CCcCCCc---HHHHHHHHHHHHHhCC-CccEEEEe------CC--CcCcHHHHH
Q 012949          317 CFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVP-VEKLAVHL------HD--TYGQSLPNI  365 (452)
Q Consensus       317 ad~I~L~-------------------DT~G~~~---P~~v~~li~~l~~~~p-~~~l~vH~------Hn--d~GlA~ANa  365 (452)
                      .|.|.|-                   |-.|...   +..+.++++++++.++ +.+|.+-.      |.  +...++.-+
T Consensus       155 fd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a  234 (671)
T 1ps9_A          155 YDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELA  234 (671)
T ss_dssp             CSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHH
T ss_pred             CCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHH
Confidence            9988883                   3344332   3447889999999885 44554411      22  111222333


Q ss_pred             HHHHHcCCCEEeecc
Q 012949          366 LISLQMGISTVDCSV  380 (452)
Q Consensus       366 LaAl~aGa~~VD~Sv  380 (452)
                      .+.-++|+++|+.+.
T Consensus       235 ~~l~~~g~d~i~v~~  249 (671)
T 1ps9_A          235 QAIEAAGATIINTGI  249 (671)
T ss_dssp             HHHHHHTCSEEEEEE
T ss_pred             HHHHhcCCCEEEcCC
Confidence            344479999999864

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=83.54  E-value=15  Score=35.41  Aligned_cols=101  Identities=12%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     -.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~~-----~Ls~~Er~~v~~~~~~~~~g-r~pviaGv---------g~~~t~~ai~la~   90 (292)
T 2ojp_A           26 KLIDYHVASGTSAIVSVGTTGESA-----TLNHDEHADVVMMTLDLADG-RIPVIAGT---------GANATAEAISLTQ   90 (292)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccchh-----hCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCccHHHHHHHHH
Confidence            366777888999998887777753     35777777766666666543 34554211         2335677888899


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+ +=..--.+++.+.+.++.+.+..+
T Consensus        91 ~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~  127 (292)
T 2ojp_A           91 RFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTD  127 (292)
T ss_dssp             HTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence            999999986654 333333577778888888877654

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=83.41  E-value=2.7  Score=40.89  Aligned_cols=82  Identities=10%  Similarity=0.045  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .++|-++ .+++..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   95 (292)
T 2vc6_A           16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG   95 (292)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcC
Confidence            568999999999999999999999999988   6788888889998887653 2455454 5567778888899999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus        96 adavlv~  102 (292)
T 2vc6_A           96 ADGVLIV  102 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=83.41  E-value=15  Score=37.09  Aligned_cols=126  Identities=18%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             HHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          151 VELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+.++.|.++|++.|++.... .+.      ...+.++.+++ .++..+  +.-+.                       .
T Consensus       110 ~~~~~~lieaGvd~I~idta~G~~~------~~~~~I~~ik~~~p~v~V--i~G~v-----------------------~  158 (366)
T 4fo4_A          110 EERVKALVEAGVDVLLIDSSHGHSE------GVLQRIRETRAAYPHLEI--IGGNV-----------------------A  158 (366)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSH------HHHHHHHHHHHHCTTCEE--EEEEE-----------------------C
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCH------HHHHHHHHHHHhcCCCce--Eeeee-----------------------C
Confidence            566888999999999985322 111      11122334443 234332  22111                       1


Q ss_pred             cHHhHHHHHHcCCCEEEEEecC-Ch--HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASA-SE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKV  305 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~-Sd--~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l  305 (452)
                      +.+.++.+.++|+|.|.+.... +.  .+.....+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+
T Consensus       159 t~e~A~~a~~aGAD~I~vG~gpGs~~~tr~~~g~g~p---~~~~l~~v~~~~~~~~iPVIA---------~GGI~~~~di  226 (366)
T 4fo4_A          159 TAEGARALIEAGVSAVKVGIGPGSICTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGDI  226 (366)
T ss_dssp             SHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHH
T ss_pred             CHHHHHHHHHcCCCEEEEecCCCCCCCcccccCcccc---hHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHH
Confidence            2347888999999999983211 11  1111112222   244455666667778888752         2344456654


Q ss_pred             HHHHHHHHHCCcCEEEEc
Q 012949          306 AYVAKELHDMGCFEISLG  323 (452)
Q Consensus       306 ~~~a~~l~~~Gad~I~L~  323 (452)
                      .+    +..+||+.|.+.
T Consensus       227 ~k----ala~GAd~V~vG  240 (366)
T 4fo4_A          227 SK----AIAAGASCVMVG  240 (366)
T ss_dssp             HH----HHHTTCSEEEES
T ss_pred             HH----HHHcCCCEEEEC
Confidence            43    345799988875

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=83.25  E-value=3.6  Score=39.31  Aligned_cols=95  Identities=21%  Similarity=0.337  Sum_probs=59.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.+++|++.|++.|-+.+..   +....-....+..|+++.+++++|+++|+.|.+      |   ++ .+.+.+..++ 
T Consensus       139 ~qi~aA~~~GA~~IELhTG~---Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA------G---Hg-L~y~Nv~~ia-  204 (243)
T 1m5w_A          139 EQIKAAAEVGAPFIEIHTGC---YADAKTDAEQAQELARIAKAATFAASLGLKVNA------G---HG-LTYHNVKAIA-  204 (243)
T ss_dssp             HHHHHHHHTTCSEEEEECHH---HHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE------E---SS-CCTTTHHHHH-
T ss_pred             HHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec------C---CC-CCHHHHHHHh-
Confidence            38899999999999998741   222211112456789999999999999999872      1   22 3344454443 


Q ss_pred             HHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHH
Q 012949          311 ELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAV  341 (452)
Q Consensus       311 ~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l  341 (452)
                      .+  -+...++|     ++.+=++.+..|+++.+.+
T Consensus       205 ~i--p~i~ElnIGHaiia~Al~~Gl~~aV~~m~~~~  238 (243)
T 1m5w_A          205 AI--PEMHELNIGHAIIGRAVMTGLKDAVAEMKRLM  238 (243)
T ss_dssp             TC--TTEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             hC--CCCeEEccCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            11  14566665     3444455666666665555

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=83.20  E-value=14  Score=42.01  Aligned_cols=78  Identities=13%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEc----CC-----cCC---CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLG----DT-----IGV---GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~----DT-----~G~---~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      .+++.+.++++.+.++|+|.|.|-    -+     .|.   -.|..+.++++.+++.++ +||.+-.--+.--...-+.+
T Consensus       645 ~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~-~Pv~vK~~~~~~~~~~~a~~  723 (1025)
T 1gte_A          645 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQ-IPFFAKLTPNVTDIVSIARA  723 (1025)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCS-SCEEEEECSCSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhC-CceEEEeCCChHHHHHHHHH
Confidence            367899999999999999988882    11     222   468899999999999874 46777655454445666788


Q ss_pred             HHHcCCCEEee
Q 012949          368 SLQMGISTVDC  378 (452)
Q Consensus       368 Al~aGa~~VD~  378 (452)
                      +.++|++.|.+
T Consensus       724 ~~~~G~d~i~v  734 (1025)
T 1gte_A          724 AKEGGADGVTA  734 (1025)
T ss_dssp             HHHHTCSEEEE
T ss_pred             HHHcCCCEEEE
Confidence            88999999988

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=83.13  E-value=2.9  Score=40.84  Aligned_cols=84  Identities=13%  Similarity=0.045  Sum_probs=68.7

Q ss_pred             CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHc
Q 012949          297 EGAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQM  371 (452)
Q Consensus       297 ~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~a  371 (452)
                      .+..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+++...+ ++|-++ .+|+..-++..+..|-++
T Consensus        15 dg~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~   94 (297)
T 2rfg_A           15 NGQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQA   94 (297)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhc
Confidence            3568999999999999999999999999988   67888888889888876543 455554 566778888899999999


Q ss_pred             CCCEEeecc
Q 012949          372 GISTVDCSV  380 (452)
Q Consensus       372 Ga~~VD~Sv  380 (452)
                      ||+.+=..-
T Consensus        95 Gadavlv~~  103 (297)
T 2rfg_A           95 GADAVLCVA  103 (297)
T ss_dssp             TCSEEEECC
T ss_pred             CCCEEEEcC
Confidence            999776653

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=83.13  E-value=14  Score=35.55  Aligned_cols=79  Identities=14%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHHCCcC-EEEEc----CCcC---C-CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc--HHHHHHHH
Q 012949          300 IPPSKVAYVAKELHDMGCF-EISLG----DTIG---V-GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ--SLPNILIS  368 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad-~I~L~----DT~G---~-~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl--A~ANaLaA  368 (452)
                      .+++.+.+.++.+.++|+| .|.|-    -+-|   + ..|+.+.++++.+++... .||.+-.--+...  ...-+..+
T Consensus       103 ~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~-~Pv~vKi~~~~~~~~~~~~a~~~  181 (311)
T 1jub_A          103 MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFT-KPLGVKLPPYFDLVHFDIMAEIL  181 (311)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCC-SCEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHH
Confidence            3678999999999999999 77762    1111   2 288999999999998763 4676655433321  11225566


Q ss_pred             HHcCCCEEeec
Q 012949          369 LQMGISTVDCS  379 (452)
Q Consensus       369 l~aGa~~VD~S  379 (452)
                      .++|++.|.++
T Consensus       182 ~~~G~d~i~v~  192 (311)
T 1jub_A          182 NQFPLTYVNSV  192 (311)
T ss_dssp             TTSCCCEEEEC
T ss_pred             HHcCCcEEEec
Confidence            78899988764

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=83.11  E-value=3.6  Score=38.47  Aligned_cols=73  Identities=21%  Similarity=0.259  Sum_probs=42.9

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEec-chhhhhhhhhhhhhccchhhhhhhh
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTP-NLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~-~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      +-.++++.+.+.|++.|-+....... ...-.+. +.++.+++..+  +++++- +.+                      
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~-~~~~~~~-~~i~~i~~~~~--ipvi~~Ggi~----------------------   89 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDG-TKSGYDT-EMIRFVRPLTT--LPIIASGGAG----------------------   89 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTT-CSSCCCH-HHHHHHGGGCC--SCEEEESCCC----------------------
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCccc-CCCcccH-HHHHHHHHhCC--CCEEEeCCCC----------------------
Confidence            45789999999999999886432110 0111233 34455554333  333332 111                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEe
Q 012949          228 VYLQGFEAAIAAGAKEVAIFA  248 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~  248 (452)
                       ..++++.+++.|++.|.+-.
T Consensus        90 -~~~~~~~~l~~Gad~V~ig~  109 (247)
T 3tdn_A           90 -KMEHFLEAFLRGADKVSINT  109 (247)
T ss_dssp             -SHHHHHHHHHTTCSEECCSH
T ss_pred             -CHHHHHHHHHcCCCeeehhh
Confidence             23588999999999888753

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=83.09  E-value=19  Score=35.03  Aligned_cols=101  Identities=10%  Similarity=0.073  Sum_probs=62.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        37 ~lv~~li~~Gv~gl~v~GtTGE~-----~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv---------g~~st~~ai~la~  101 (306)
T 1o5k_A           37 RLVRYQLENGVNALIVLGTTGES-----PTVNEDEREKLVSRTLEIVDG-KIPVIVGA---------GTNSTEKTLKLVK  101 (306)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTG-----GGCCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCccccch-----hhCCHHHHHHHHHHHHHHhCC-CCeEEEcC---------CCccHHHHHHHHH
Confidence            36677788999998887776664     335667766666666655543 34443211         2235567777888


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..+
T Consensus       102 ~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  138 (306)
T 1o5k_A          102 QAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTD  138 (306)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS
T ss_pred             HHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            8888888855443 22333466667777777766543

>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima}

Probab=83.07  E-value=25  Score=35.72  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=81.5

Q ss_pred             HHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHH---h-CC---CcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          237 IAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAK---V-LS---IPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       237 ~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak---~-~G---~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ...|.|.+..++-..+      ...+++++-+.+.+..++++   + +.   -.+.+        +..+-..++--.+-+
T Consensus       143 ~~lgsDI~m~lDe~~~------~~~~~~~~~~sv~rT~rWa~r~~~~~~~~~~~lfg--------iVQGg~~~dLR~~sa  208 (381)
T 2ash_A          143 IALGSDICMVFDHCPV------PDADYEEVKEATERTYRWALRSKKAFKTENQALFG--------IVQGGIYPDLRRESA  208 (381)
T ss_dssp             HHHTCSEEECCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHHCCCSSCEEEE--------EECCTTCHHHHHHHH
T ss_pred             HHhCCCEEEECCcCCC------CCCCHHHHHHHHHHHHHHHHHHHHHhhCCCCcEEE--------EEcCCCCHHHHHHHH
Confidence            3568898877653332      22455555555556555554   2 21   11221        234445666666778


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCcH-HHHHHHHHHcCCCEEeeccc
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQS-LPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~GlA-~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      +.+.+.+.+.+.|.--...-..+.+.+++..+...+|. .|.  |.   +|.+ ..+.+.++..|+|.+|.+.-
T Consensus       209 ~~l~~~~~~GyaIGGlsvGe~~~~~~~~l~~~~~~LP~~kPR--yL---mGvG~P~~il~~V~~GvDmFDcv~P  277 (381)
T 2ash_A          209 LQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPEDKPR--YF---MGGGSPELILELVDRGVDMFDSVFP  277 (381)
T ss_dssp             HHHHTTCCSEEEECSCSSSSCHHHHHHHHHHHHTTSCTTSCE--EE---CSCCCHHHHHHHHTTTCCEEEESHH
T ss_pred             HHHHhcCCceEEecCcccCCCHHHHHHHHHHHHhhCCCCCcE--EE---cCCCCHHHHHHHHHcCCCEEeCChh
Confidence            99999999999997643333567889999999998885 333  33   3333 46899999999999998764

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=83.02  E-value=16  Score=35.18  Aligned_cols=98  Identities=11%  Similarity=0.059  Sum_probs=66.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+..|.+     -.|.+|-.+-++.+++.++  |  |.+      |   .+..+.+...++++
T Consensus        23 ~lv~~li~~Gv~gl~v~GttGE~~-----~Ls~~Er~~v~~~~~~~~~--g--vi~------G---vg~~~t~~ai~la~   84 (286)
T 2r91_A           23 NHVKNITSKGVDVVFVAGTTGLGP-----ALSLQEKMELTDAATSAAR--R--VIV------Q---VASLNADEAIALAK   84 (286)
T ss_dssp             HHHHHHHHTTCCEEEETSTTTTGG-----GSCHHHHHHHHHHHHHHCS--S--EEE------E---CCCSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECccccChh-----hCCHHHHHHHHHHHHHHhC--C--EEE------e---eCCCCHHHHHHHHH
Confidence            366777889999998887777753     3567766666655555443  2  321      1   12345678888999


Q ss_pred             HHHHCCcCEEEEcCCc-CC-CcHHHHHHHHHHHHHhCC
Q 012949          311 ELHDMGCFEISLGDTI-GV-GTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~-G~-~~P~~v~~li~~l~~~~p  346 (452)
                      .+.++|+|.+-+.=.. -- .+++.+.+.++.+.+..+
T Consensus        85 ~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~  122 (286)
T 2r91_A           85 YAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVS  122 (286)
T ss_dssp             HHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCS
T ss_pred             HHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999977665333 22 477888888888888754

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=82.92  E-value=4.9  Score=42.28  Aligned_cols=131  Identities=18%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhhhhh
Q 012949          148 GVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVISSNL  226 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~  226 (452)
                      ++-.+.++.|.++|++.|++.... +.    .....+.++.+++. ++..  +++-+.                      
T Consensus       255 ~d~~era~aLveaGvd~I~Id~a~-g~----~~~v~~~i~~i~~~~~~~~--vi~g~v----------------------  305 (511)
T 3usb_A          255 ADAMTRIDALVKASVDAIVLDTAH-GH----SQGVIDKVKEVRAKYPSLN--IIAGNV----------------------  305 (511)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTSE--EEEEEE----------------------
T ss_pred             cchHHHHHHHHhhccceEEecccc-cc----hhhhhhHHHHHHHhCCCce--EEeeee----------------------
Confidence            344667889999999999998542 11    11122344444432 3322  222111                      


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHH---hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFS---KSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~---~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                       .+.++.+.+.++|+|.|.+-...--.+.   ...++..   .+..+.++.+.+++.+++|.+         +.+-.+++
T Consensus       306 -~t~e~a~~~~~aGad~i~vg~g~gsi~~~~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~  372 (511)
T 3usb_A          306 -ATAEATKALIEAGANVVKVGIGPGSICTTRVVAGVGVP---QLTAVYDCATEARKHGIPVIA---------DGGIKYSG  372 (511)
T ss_dssp             -CSHHHHHHHHHHTCSEEEECSSCSTTCCHHHHHCCCCC---HHHHHHHHHHHHHTTTCCEEE---------ESCCCSHH
T ss_pred             -ccHHHHHHHHHhCCCEEEECCCCccccccccccCCCCC---cHHHHHHHHHHHHhCCCcEEE---------eCCCCCHH
Confidence             1235788899999999987332111110   1112222   234555667778888888752         23445666


Q ss_pred             HHHHHHHHHHHCCcCEEEEcC
Q 012949          304 KVAYVAKELHDMGCFEISLGD  324 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~D  324 (452)
                      .+.+.    .++||+.+.+.=
T Consensus       373 di~ka----la~GA~~V~vGs  389 (511)
T 3usb_A          373 DMVKA----LAAGAHVVMLGS  389 (511)
T ss_dssp             HHHHH----HHTTCSEEEEST
T ss_pred             HHHHH----HHhCchhheecH
Confidence            66543    357999888763

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=82.84  E-value=15  Score=33.73  Aligned_cols=111  Identities=12%  Similarity=0.087  Sum_probs=60.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC---HHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP---PSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d---~e~l~~  307 (452)
                      +.++.+.++|.+.|.+.........  .-.       ..+.++.+.+++.|+++.. +...+  +... .+   .+.+.+
T Consensus        23 ~~l~~~~~~G~~~vEl~~~~~~~~~--~~~-------~~~~~~~~~~~~~gl~~~~-~~~~~--~~~~-~~~~~~~~~~~   89 (272)
T 2q02_A           23 AFFRLVKRLEFNKVELRNDMPSGSV--TDD-------LNYNQVRNLAEKYGLEIVT-INAVY--PFNQ-LTEEVVKKTEG   89 (272)
T ss_dssp             HHHHHHHHTTCCEEEEETTSTTSST--TTT-------CCHHHHHHHHHHTTCEEEE-EEEET--TTTS-CCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeecccccccc--ccc-------cCHHHHHHHHHHcCCeEEe-chhhh--ccCC-cHHHHHHHHHH
Confidence            4678899999999999752210000  000       2233455677888998742 22111  1111 12   245667


Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcH---HHH-HHHHHHHHHhC--CCccEEEEeCC
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTP---GTV-VPMLEAVMAVV--PVEKLAVHLHD  356 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P---~~v-~~li~~l~~~~--p~~~l~vH~Hn  356 (452)
                      .++.+.++|++.|.+.  .|...+   ..+ .+.++.+.+..  -++.|.+|.|+
T Consensus        90 ~i~~a~~lG~~~v~~~--~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~  142 (272)
T 2q02_A           90 LLRDAQGVGARALVLC--PLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLG  142 (272)
T ss_dssp             HHHHHHHHTCSEEEEC--CCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCC
T ss_pred             HHHHHHHhCCCEEEEc--cCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecC
Confidence            7788888899988873  222211   233 34444443322  24578888886

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=82.82  E-value=9.6  Score=37.47  Aligned_cols=182  Identities=15%  Similarity=0.095  Sum_probs=101.6

Q ss_pred             CHHHHHHHHHHHHHC----CCCEEEEecCCC-CCcccc-cC--CHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhh
Q 012949          146 PTGVKVELIRRLVSS----GLPVVEATSFVS-PKWVPQ-LA--DARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQ  216 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~----Gv~~IEvG~~~s-~~~~p~-~~--D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~  216 (452)
                      +.++..++++.|.++    |+..+=-++|-- |+=.|. +.  .-++=++.+++.. ...+++++--.            
T Consensus        53 s~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev~------------  120 (298)
T 3fs2_A           53 TRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDIH------------  120 (298)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEECC------------
T ss_pred             CHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeC------------
Confidence            788999999999876    566555444321 211110 00  1123334444321 22333333111            


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                                  ..+.++.+.+. ++.+.|...  +..   |        .    ++++++-+.|.+|-  ++.      
T Consensus       121 ------------D~~~v~~l~~~-vd~lkIgA~--~~~---n--------~----~LLr~va~~gkPVi--lK~------  162 (298)
T 3fs2_A          121 ------------TEEQCAAVAPV-VDVLQIPAF--LCR---Q--------T----DLLIAAARTGRVVN--VKK------  162 (298)
T ss_dssp             ------------SHHHHHHHTTT-CSEEEECGG--GTT---C--------H----HHHHHHHHTTSEEE--EEC------
T ss_pred             ------------CHHHHHHHHhh-CCEEEECcc--ccC---C--------H----HHHHHHHccCCcEE--EeC------
Confidence                        12366666666 888877542  110   0        1    23445556788876  332      


Q ss_pred             CCC-CCHHHHHHHHHHHHHCCcCEEEEcCCcCCC-cHH---HHHHHHHHHHHhCCCccEEE-EeCC-------------C
Q 012949          297 EGA-IPPSKVAYVAKELHDMGCFEISLGDTIGVG-TPG---TVVPMLEAVMAVVPVEKLAV-HLHD-------------T  357 (452)
Q Consensus       297 ~~r-~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~-~P~---~v~~li~~l~~~~p~~~l~v-H~Hn-------------d  357 (452)
                       +. .+++++...++.+.+.|.+.|.|+.-.-.. .+.   .++ .|..+++ + ..+|.+ ..|-             .
T Consensus       163 -Gms~t~~ei~~ave~i~~~Gn~~iiL~erg~~y~~~~~~vdl~-~i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~  238 (298)
T 3fs2_A          163 -GQFLAPWDMKNVLAKITESGNPNVLATERGVSFGYNTLVSDMR-ALPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQ  238 (298)
T ss_dssp             -CTTCCGGGHHHHHHHHHTTTCCCEEEEECCEECSSSCEECCTT-HHHHHHT-T-TSCEEEEHHHHTCCCC--------C
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCCccCHH-HHHHHHH-c-CCcEEEcCCCccccCCcccCCCCCc
Confidence             23 478888889999999998878777633211 111   122 2555676 6 457888 6664             2


Q ss_pred             cCcHHHHHHHHHHcCCC--EEeeccc
Q 012949          358 YGQSLPNILISLQMGIS--TVDCSVA  381 (452)
Q Consensus       358 ~GlA~ANaLaAl~aGa~--~VD~Sv~  381 (452)
                      +.+...-+++|+.+||+  .|+.=..
T Consensus       239 r~~v~~~a~AAvAlGAdGl~IE~H~t  264 (298)
T 3fs2_A          239 REFVETLARAAVAVGVAGFFIETHED  264 (298)
T ss_dssp             GGGHHHHHHHHHHHCCSEEEEEEESS
T ss_pred             hhhHHHHHHHHHHcCCCEEEEEecCC
Confidence            23447789999999999  7765443

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=82.68  E-value=32  Score=32.36  Aligned_cols=167  Identities=14%  Similarity=0.054  Sum_probs=91.8

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      +.++.+.++|.|.|++|.-..       -..+.+.+.++++....++++. |...                         
T Consensus        22 ~~~~~~~~~GtD~i~vGGs~g-------vt~~~~~~~v~~ik~~~~Pvvlfp~~~-------------------------   69 (228)
T 3vzx_A           22 EQLEILCESGTDAVIIGGSDG-------VTEDNVLRMMSKVRRFLVPCVLEVSAI-------------------------   69 (228)
T ss_dssp             THHHHHHTSSCSEEEECCCSC-------CCHHHHHHHHHHHTTSSSCEEEECSCG-------------------------
T ss_pred             HHHHHHHHcCCCEEEECCcCC-------CCHHHHHHHHHHhhccCCCEEEeCCCH-------------------------
Confidence            345567899999999996321       1234556666655445555433 4321                         


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-----cE--EEEEEeeecCCCCC-----
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-----PV--RGYVSCVVGCPVEG-----  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-----~V--~~~l~~~~g~p~~~-----  298 (452)
                      +.    +..|+|-+-+..=.|.-        +.+..+.   ..++.+|+.|+     ++  .+|+...   |...     
T Consensus        70 ~~----v~~gaD~~l~pslln~~--------~~~~i~g---~~~~a~~~~g~~~~~~e~i~~gYivv~---p~s~~~~~~  131 (228)
T 3vzx_A           70 EA----IVPGFDLYFIPSVLNSK--------NADWIVG---MHQKAMKEYGELMSMEEIVAEGYCIAN---PDCKAAALT  131 (228)
T ss_dssp             GG----CCSCCSEEEEEEETTBS--------SGGGTTH---HHHHHHHHHHHHHHHSCEEEEEEEECC---SSSHHHHHT
T ss_pred             HH----ccccCCEEEEeeecCCC--------Ccchhhh---HHHHHHHHcCCCCcccceeeeEEEEEC---CCCcceeee
Confidence            01    13588877665322210        0111111   22234567775     54  5666643   3321     


Q ss_pred             ----CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          299 ----AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       299 ----r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                          -.+++.+..++..+.-+|.+.|++-= .|.-.   -.++|+.+++..+..++.+=+    |.-.......+.+||+
T Consensus       132 ~a~~~~~~e~~~~~a~~a~~~g~~~VYld~-sG~~~---~~~~i~~i~~~~~~~Pv~vGG----GI~t~e~a~~~~~gAD  203 (228)
T 3vzx_A          132 EADADLNMDDIVAYARVSELLQLPIFYLEY-SGVLG---DIEAVKKTKAVLETSTLFYGG----GIKDAETAKQYAEHAD  203 (228)
T ss_dssp             TBCCCCCHHHHHHHHHHHHHTTCSEEEEEC-TTSCC---CHHHHHHHHHHCSSSEEEEES----SCCSHHHHHHHHTTCS
T ss_pred             cccCCCCHHHHHHHHHHHHHcCCCEEEecC-CCCcC---CHHHHHHHHHhcCCCCEEEeC----CCCCHHHHHHHHhCCC
Confidence                12568888888888888999998844 66533   367788888876333444422    2222333333347988


Q ss_pred             EE
Q 012949          375 TV  376 (452)
Q Consensus       375 ~V  376 (452)
                      .|
T Consensus       204 ~V  205 (228)
T 3vzx_A          204 VI  205 (228)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=82.66  E-value=4.1  Score=37.66  Aligned_cols=116  Identities=9%  Similarity=-0.064  Sum_probs=64.3

Q ss_pred             HhHHHHHHcCCCEEEEE-ecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEEeeecCCCCC--CCCHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG-YVSCVVGCPVEG--AIPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~-~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~-~l~~~~g~p~~~--r~d~e~l~  306 (452)
                      +.++.+.+.|.+.|.+. ..  ..+.. ...       ..+.++.+.+++.|+++.. .....++.++..  ....+.+.
T Consensus        18 ~~l~~~~~~G~~~vEl~~~~--~~~~~-~~~-------~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (278)
T 1i60_A           18 LDLELCEKHGYDYIEIRTMD--KLPEY-LKD-------HSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFK   87 (278)
T ss_dssp             HHHHHHHHTTCSEEEEETTT--HHHHH-TTS-------SCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccHH--HHHHH-hcc-------CCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHH
Confidence            46788999999999998 43  11100 000       1234556778899998752 221111111100  01134667


Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCC----c-HHHHHHHHHHHHH---hC--CCccEEEEeCCCc
Q 012949          307 YVAKELHDMGCFEISLGDTIGVG----T-PGTVVPMLEAVMA---VV--PVEKLAVHLHDTY  358 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~----~-P~~v~~li~~l~~---~~--p~~~l~vH~Hnd~  358 (452)
                      +.++.+.++|++.|.+.  .|..    . ......+++.+++   ..  -++.|.+|.|+..
T Consensus        88 ~~i~~a~~lG~~~v~~~--~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~  147 (278)
T 1i60_A           88 GMMETCKTLGVKYVVAV--PLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHP  147 (278)
T ss_dssp             HHHHHHHHHTCCEEEEE--CCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCT
T ss_pred             HHHHHHHHcCCCEEEEe--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCc
Confidence            78888888999988873  2221    2 3333444444332   22  2468999999875

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=82.66  E-value=19  Score=33.37  Aligned_cols=89  Identities=18%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCCccEEE--EeC-CCcCcHHHH
Q 012949          291 VVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPVEKLAV--HLH-DTYGQSLPN  364 (452)
Q Consensus       291 ~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~~~l~v--H~H-nd~GlA~AN  364 (452)
                      +.+.|.... ..+.....++.+.+.|++.|-+.=-.|.   ..+..+.+.++.+++..+.+.+-+  ..- -|......-
T Consensus        59 v~~~P~g~~-~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~  137 (225)
T 1mzh_A           59 VIGFPLGLN-KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKA  137 (225)
T ss_dssp             EESTTTCCS-CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHH
T ss_pred             EecCCCCcc-chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHH
Confidence            345566533 3343344567788899999985323333   356778888999998875222222  111 011123455


Q ss_pred             HHHHHHcCCCEEeecc
Q 012949          365 ILISLQMGISTVDCSV  380 (452)
Q Consensus       365 aLaAl~aGa~~VD~Sv  380 (452)
                      +..+.++|||.|.++-
T Consensus       138 a~~a~eaGad~I~tst  153 (225)
T 1mzh_A          138 VEICIEAGADFIKTST  153 (225)
T ss_dssp             HHHHHHHTCSEEECCC
T ss_pred             HHHHHHhCCCEEEECC
Confidence            7778899999996655

>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*

Probab=82.64  E-value=2.7  Score=42.03  Aligned_cols=70  Identities=14%  Similarity=0.038  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHCCcCEEEEcCCc-CCCcHHHH--------HHHHHHHH-HhCC----CccEEEEeCCCcCcHHHHHHHHHH
Q 012949          305 VAYVAKELHDMGCFEISLGDTI-GVGTPGTV--------VPMLEAVM-AVVP----VEKLAVHLHDTYGQSLPNILISLQ  370 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v--------~~li~~l~-~~~p----~~~l~vH~Hnd~GlA~ANaLaAl~  370 (452)
                      +.++++...++|++.|.+.|+. |.++|...        .++++.++ +..|    .+++-+|+.++ +.-+.   .-.+
T Consensus       199 ~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~---~l~~  274 (367)
T 1r3s_A          199 LVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALE---ELAQ  274 (367)
T ss_dssp             HHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHH---HHTT
T ss_pred             HHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHH---HHHh
Confidence            4456667778999999998854 56677664        44466666 5433    46788888776 33322   2236


Q ss_pred             cCCCEEee
Q 012949          371 MGISTVDC  378 (452)
Q Consensus       371 aGa~~VD~  378 (452)
                      .|++.++.
T Consensus       275 ~g~d~i~~  282 (367)
T 1r3s_A          275 AGYEVVGL  282 (367)
T ss_dssp             SSCSEEEC
T ss_pred             cCCCEEEe
Confidence            89987764

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=82.62  E-value=15  Score=35.92  Aligned_cols=99  Identities=13%  Similarity=0.079  Sum_probs=58.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +. +.+...++++.
T Consensus        38 lv~~li~~Gv~gl~v~GtTGE~-----~~Ls~eEr~~vi~~~~~~~~g-rvpViaGv---------g~-st~~ai~la~~  101 (314)
T 3d0c_A           38 NVEFLLQNGIEVIVPNGNTGEF-----YALTIEEAKQVATRVTELVNG-RATVVAGI---------GY-SVDTAIELGKS  101 (314)
T ss_dssp             HHHHHHHTTCSEECTTSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSEEEEEE---------CS-SHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECcccCCh-----hhCCHHHHHHHHHHHHHHhCC-CCeEEecC---------Cc-CHHHHHHHHHH
Confidence            5666777888887766555554     234666666655555555432 24443211         22 45667777777


Q ss_pred             HHHCCcCEEEEcC-CcCCCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISLGD-TIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L~D-T~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+-+.= ..--.+++.+++.++.+.+..+
T Consensus       102 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~  137 (314)
T 3d0c_A          102 AIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALD  137 (314)
T ss_dssp             HHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSS
T ss_pred             HHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            7777877655532 2223456667777777776654

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=82.56  E-value=3.9  Score=40.40  Aligned_cols=70  Identities=13%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHH----HHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPML----EAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li----~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.++++...++|++.|.+.|+.|.   ++|....+++    +.+.+.+... .-+|+.-+.+.-   .-.-.+.|++.+
T Consensus       191 ~~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~-~iih~~g~~~~~---l~~~~~~g~d~i  266 (348)
T 4ay7_A          191 ASIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSV-TVLHICGNVNPI---LSDMADCGFEGL  266 (348)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSE-EEEECCSCCHHH---HHHHHTSCCSEE
T ss_pred             HHHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCC-cEEEecCCcHHH---HHHHHHhccccc
Confidence            3445667777899999999999875   8998877764    4444555653 346777543222   122236899876


Q ss_pred             e
Q 012949          377 D  377 (452)
Q Consensus       377 D  377 (452)
                      +
T Consensus       267 ~  267 (348)
T 4ay7_A          267 S  267 (348)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=82.56  E-value=22  Score=34.36  Aligned_cols=161  Identities=14%  Similarity=0.121  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          149 VKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      +-.++++...+.|...|-+--  -+.|..  ... +.+..+++..  .++++.-.          |..            
T Consensus        80 dp~~~A~~y~~~GA~~IsVlt--d~~~f~--Gs~-~~L~~ir~~v--~lPVl~Kd----------fi~------------  130 (272)
T 3tsm_A           80 DPPALAKAYEEGGAACLSVLT--DTPSFQ--GAP-EFLTAARQAC--SLPALRKD----------FLF------------  130 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEC--CSTTTC--CCH-HHHHHHHHTS--SSCEEEES----------CCC------------
T ss_pred             CHHHHHHHHHHCCCCEEEEec--cccccC--CCH-HHHHHHHHhc--CCCEEECC----------ccC------------
Confidence            447799999999999998731  111111  122 3455565432  34444211          111            


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ....+..|.++|+|.|.+....=+              -+.+.+++++++++|+.+-+.+        +   +.+.    
T Consensus       131 d~~qi~ea~~~GAD~VlLi~a~L~--------------~~~l~~l~~~a~~lGl~~lvev--------h---~~eE----  181 (272)
T 3tsm_A          131 DPYQVYEARSWGADCILIIMASVD--------------DDLAKELEDTAFALGMDALIEV--------H---DEAE----  181 (272)
T ss_dssp             STHHHHHHHHTTCSEEEEETTTSC--------------HHHHHHHHHHHHHTTCEEEEEE--------C---SHHH----
T ss_pred             CHHHHHHHHHcCCCEEEEcccccC--------------HHHHHHHHHHHHHcCCeEEEEe--------C---CHHH----
Confidence            112578899999999998865322              1456788899999999876322        1   2333    


Q ss_pred             HHHHHHCCcCEEEEcC----CcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 012949          309 AKELHDMGCFEISLGD----TIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQ-SLPNILISLQMGISTV  376 (452)
Q Consensus       309 a~~l~~~Gad~I~L~D----T~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~V  376 (452)
                      ++.+.++|++.|.+.-    |.++ .+..+.+++    +.+|. .++-.=    -|. .......+.++||+.|
T Consensus       182 l~~A~~~ga~iIGinnr~l~t~~~-dl~~~~~L~----~~ip~~~~vIae----sGI~t~edv~~l~~~Ga~gv  246 (272)
T 3tsm_A          182 MERALKLSSRLLGVNNRNLRSFEV-NLAVSERLA----KMAPSDRLLVGE----SGIFTHEDCLRLEKSGIGTF  246 (272)
T ss_dssp             HHHHTTSCCSEEEEECBCTTTCCB-CTHHHHHHH----HHSCTTSEEEEE----SSCCSHHHHHHHHTTTCCEE
T ss_pred             HHHHHhcCCCEEEECCCCCccCCC-ChHHHHHHH----HhCCCCCcEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            3455688999888763    2222 234444443    44542 222211    222 2356666778898854

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}

Probab=82.55  E-value=13  Score=35.53  Aligned_cols=173  Identities=13%  Similarity=0.027  Sum_probs=0.0

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCccc------ccCCHHHHHHHHHhccCCceeEEecch--------------------
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVP------QLADARDVMEAVRDLEGARLPVLTPNL--------------------  204 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p------~~~D~e~v~~~i~~~~~~~l~~l~~~~--------------------  204 (452)
                      .+.++.+.++|++.||+...  +..++      .-.+.+++.+.+++ .++++.++....                    
T Consensus        18 ~~~l~~~~~~G~~~vEl~~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~g~~~~~p~~~~~~~~~~~~   94 (340)
T 2zds_A           18 EEVCRLARDFGYDGLELACW--GDHFEVDKALADPSYVDSRHQLLDK-YGLKCWAISNHLVGQAVCDAIIDERHEAILPA   94 (340)
T ss_dssp             HHHHHHHHHHTCSEEEEESS--TTTCCHHHHHHCTTHHHHHHHHHHH-TTCEEEEEEEHHHHHHHHCSCCSHHHHHHSCH
T ss_pred             HHHHHHHHHcCCCEEEeccc--cccCCccccccCHHHHHHHHHHHHH-cCCeEEEeeccccccccccccccccccccccc


Q ss_pred             --------hhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCC------------hHHHhhhcCCCHH
Q 012949          205 --------KVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASAS------------EAFSKSNINCSIE  264 (452)
Q Consensus       205 --------~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~S------------d~~~~~~~~~s~e  264 (452)
                              ...-++.+.+-..              .++.|.+.|++.|.+.....            +...+..+    +
T Consensus        95 ~l~~~~~~~~~r~~~~~~~~~--------------~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~----~  156 (340)
T 2zds_A           95 RIWGDGDAEGVRQRAAAEIKD--------------TARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGY----Q  156 (340)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHH--------------HHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHH----H
T ss_pred             cccccCCHHHHHHHHHHHHHH--------------HHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHH----H


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC--cCEEEEcCCcCCCcHH-HHHHHHHHH
Q 012949          265 DSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG--CFEISLGDTIGVGTPG-TVVPMLEAV  341 (452)
Q Consensus       265 ~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G--ad~I~L~DT~G~~~P~-~v~~li~~l  341 (452)
                      ...+.+.++.++|++.|+++.        -+............+.+.+.+.+  ...=..-|+.=...-. ...+.++.+
T Consensus       157 ~~~~~l~~l~~~a~~~Gv~l~--------lEn~~~~~~~~~~~~~~ll~~v~~~~~vg~~~D~~H~~~~g~d~~~~l~~~  228 (340)
T 2zds_A          157 DFADRWNPILDVFDAEGVRFA--------HEVHPSEIAYDYWTTHRALEAVGHRPAFGLNFDPSHFVWQDLDPVGFLWDF  228 (340)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEE--------EECCTTSSCCSHHHHHHHHHHTTTCTTEEEEECCHHHHHTTCCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCEEE--------EEcCCCcccCCHHHHHHHHHhcCCCCCeeEEEchhhHHHhCCCHHHHHHHH


Q ss_pred             HHhCCCccEEEEeCC
Q 012949          342 MAVVPVEKLAVHLHD  356 (452)
Q Consensus       342 ~~~~p~~~l~vH~Hn  356 (452)
                      ...+..    +|+||
T Consensus       229 ~~~i~~----vHl~D  239 (340)
T 2zds_A          229 RDRIYH----VDCKE  239 (340)
T ss_dssp             GGGEEE----EEECE
T ss_pred             HhhEEE----EEecc

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=82.55  E-value=2.8  Score=37.89  Aligned_cols=74  Identities=15%  Similarity=0.097  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE--EeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV--HLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v--H~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .+.+...++++.+.+ |++.|-+.|..  ..+ .-.++|+.+++.+|+.++.+  -.|| .  .---.-.|.++||+.|.
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~--~~~-~g~~~i~~l~~~~~~~~i~~~l~~~d-i--~~~~~~~a~~~Gad~v~   82 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPL--IKA-EGLSVITAVKKAHPDKIVFADMKTMD-A--GELEADIAFKAGADLVT   82 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHH--HHH-HCTHHHHHHHHHSTTSEEEEEEEECS-C--HHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHH--HHh-hCHHHHHHHHHhCCCCeEEEEEEecC-c--cHHHHHHHHhCCCCEEE
Confidence            467888889998888 88998886532  122 12356888888886655554  4554 1  11113568899999886


Q ss_pred             ecc
Q 012949          378 CSV  380 (452)
Q Consensus       378 ~Sv  380 (452)
                      ...
T Consensus        83 vh~   85 (207)
T 3ajx_A           83 VLG   85 (207)
T ss_dssp             EET
T ss_pred             Eec
Confidence            544

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=82.47  E-value=15  Score=36.55  Aligned_cols=111  Identities=13%  Similarity=0.087  Sum_probs=69.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.|++.|.+.....+                  .+.++.+|+.|+.|...+           .+++    .++
T Consensus       113 ~~~~~~~~~g~~~V~~~~g~~~------------------~~~i~~~~~~g~~v~~~v-----------~t~~----~a~  159 (369)
T 3bw2_A          113 AKLAVLLDDPVPVVSFHFGVPD------------------REVIARLRRAGTLTLVTA-----------TTPE----EAR  159 (369)
T ss_dssp             HHHHHHHHSCCSEEEEESSCCC------------------HHHHHHHHHTTCEEEEEE-----------SSHH----HHH
T ss_pred             HHHHHHHhcCCCEEEEeCCCCc------------------HHHHHHHHHCCCeEEEEC-----------CCHH----HHH
Confidence            4678889999999988654221                  134455667788765322           1233    356


Q ss_pred             HHHHCCcCEEEEcCC-----cCCCcH--------HHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHHcCCCEE
Q 012949          311 ELHDMGCFEISLGDT-----IGVGTP--------GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQMGISTV  376 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT-----~G~~~P--------~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~aGa~~V  376 (452)
                      .+.++|+|.|.+--.     .|...|        ....++++.+++.+. ++|..=    =|. -..|+.+++.+||+.|
T Consensus       160 ~a~~~GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~-iPViaa----GGI~~~~~~~~~l~~GAd~V  234 (369)
T 3bw2_A          160 AVEAAGADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVD-IPVVAA----GGIMRGGQIAAVLAAGADAA  234 (369)
T ss_dssp             HHHHTTCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCS-SCEEEE----SSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHcCCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcC-ceEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            678899999988221     232211        223567778877653 344332    345 4578888999999988


Q ss_pred             eec
Q 012949          377 DCS  379 (452)
Q Consensus       377 D~S  379 (452)
                      ...
T Consensus       235 ~vG  237 (369)
T 3bw2_A          235 QLG  237 (369)
T ss_dssp             EES
T ss_pred             EEC
Confidence            764

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=82.39  E-value=25  Score=34.33  Aligned_cols=76  Identities=9%  Similarity=-0.057  Sum_probs=47.1

Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcC----------------CCc---HHHHHHHHHHHHHhCC-CccEEEEeCCCcC
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIG----------------VGT---PGTVVPMLEAVMAVVP-VEKLAVHLHDTYG  359 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G----------------~~~---P~~v~~li~~l~~~~p-~~~l~vH~Hnd~G  359 (452)
                      .+.+.+.++++.+.++|+|.|.+..+..                +.-   .....++++.+++.++ .++|-.=.-=.. 
T Consensus       222 ~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~ipVi~~GGI~~-  300 (336)
T 1f76_A          222 LSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRLPIIGVGGIDS-  300 (336)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSSCEEEESSCCS-
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCCCEEEECCCCC-
Confidence            4567889999999999999999987631                111   1123366777777664 344433221111 


Q ss_pred             cHHHHHHHHHHcCCCEEee
Q 012949          360 QSLPNILISLQMGISTVDC  378 (452)
Q Consensus       360 lA~ANaLaAl~aGa~~VD~  378 (452)
                        -..+..++++||+.|-.
T Consensus       301 --~~da~~~l~~GAd~V~i  317 (336)
T 1f76_A          301 --VIAAREKIAAGASLVQI  317 (336)
T ss_dssp             --HHHHHHHHHHTCSEEEE
T ss_pred             --HHHHHHHHHCCCCEEEe
Confidence              24566677789887743

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=82.35  E-value=10  Score=35.97  Aligned_cols=115  Identities=10%  Similarity=0.019  Sum_probs=66.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC---CCCC-CCCHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---PVEG-AIPPSKVA  306 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~---p~~~-r~d~e~l~  306 (452)
                      +.++.+.++|.+.|.++..  +........       ..+.++.+.+++.|+++.. +.. ++.   ++.. +...+.+.
T Consensus        40 ~~l~~a~~~G~~~vEl~~~--~~~~~~~~~-------~~~~~~~~~l~~~gl~i~~-~~~-~~~~~~~~~~~~~~~~~~~  108 (296)
T 2g0w_A           40 KRVKVAAENGFDGIGLRAE--NYVDALAAG-------LTDEDMLRILDEHNMKVTE-VEY-ITQWGTAEDRTAEQQKKEQ  108 (296)
T ss_dssp             HHHHHHHHTTCSEEEEEHH--HHHHHHHTT-------CCHHHHHHHHHHTTCEEEE-EEC-BCCCSSTTTCCHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCHH--HHHHHHhcC-------CcHHHHHHHHHHcCCceEe-ehh-hhccccCChHHHHHHHHHH
Confidence            4788999999999999853  110000001       1234556778889998753 221 211   1110 00134667


Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                      +.++.+.++|++.|.+.-. +......+.+.++.+.+...++.|.+|.|+.
T Consensus       109 ~~i~~A~~lGa~~v~~g~~-~~~~~~~~~~~l~~l~~~a~Gv~l~lE~~~~  158 (296)
T 2g0w_A          109 TTFHMARLFGVKHINCGLL-EKIPEEQIIVALGELCDRAEELIIGLEFMPY  158 (296)
T ss_dssp             HHHHHHHHHTCCEEEECCC-SCCCHHHHHHHHHHHHHHHTTSEEEEECCTT
T ss_pred             HHHHHHHHcCCCEEEEcCC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCC
Confidence            7888888899999887321 2223345555555555443457899998864

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=82.34  E-value=29  Score=32.38  Aligned_cols=120  Identities=13%  Similarity=0.070  Sum_probs=67.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeee--cCCCCCCCC-------
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVV--GCPVEGAIP-------  301 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~--g~p~~~r~d-------  301 (452)
                      +.++.+.+.|.+.|.+.......+.. ....+.    +.+.++.+.+++.|+++.. +....  +.+..+ .+       
T Consensus        34 ~~l~~~~~~G~~~iEl~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~~~~~~~~l~~-~d~~~r~~~  106 (295)
T 3cqj_A           34 ERLQLAKTLGFDFVEMSVDETDERLS-RLDWSR----EQRLALVNAIVETGVRVPS-MCLSAHRRFPLGS-EDDAVRAQG  106 (295)
T ss_dssp             HHHHHHHHTTCSEEEEECCSSHHHHG-GGGCCH----HHHHHHHHHHHHHCCEEEE-EEEGGGGTSCTTC-SSHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEecCCcccccC-cccCCH----HHHHHHHHHHHHcCCeEEE-EecCcccCCCCCC-CCHHHHHHH
Confidence            47888999999999998654322111 112221    3344666778889998753 22110  001111 12       


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCc---CCCcHHHHHHHHHHHHHh---C--CCccEEEEeCCC
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTI---GVGTPGTVVPMLEAVMAV---V--PVEKLAVHLHDT  357 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~---G~~~P~~v~~li~~l~~~---~--p~~~l~vH~Hnd  357 (452)
                      .+.+.+.++.+.++|++.|.+.-..   +.........+++.+++.   .  -++.|.+|.|+.
T Consensus       107 ~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  170 (295)
T 3cqj_A          107 LEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDY  170 (295)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSS
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCC
Confidence            2456778888889999999885110   112233444444444332   1  146799999986

>3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400}

Probab=82.25  E-value=10  Score=37.39  Aligned_cols=129  Identities=14%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHc-C
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQM-G  372 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~a-G  372 (452)
                      +.+|+.+++-+.++.++||..|-|     .|-.....|+.+++++..+|++.|. .|.+-..-..++....=++.+.. .
T Consensus        28 PvTpeEia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d~-iI~~TTgg~~~~~~eerla~~~~~~  106 (311)
T 3e02_A           28 PITPEEIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTDA-ILNITTGGGLGMSLDERLAPARAAR  106 (311)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCCC-EEEECSSCSTTCCHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCCc-EEEECCCCCCCCCHHHHHHHHHhcC
Confidence            468899999999999999876655     3556688899999999999998764 57666666677777777777643 5


Q ss_pred             CCEEeeccc--CCCCCCCCC------------------C---CCCcccHHHHHHHHHcCCCCCC---CChhhHHHHHHHH
Q 012949          373 ISTVDCSVA--GLGGCPYAK------------------G---ASGNVATEDVVYMLSGLGVETN---VDLRKLMLAGDFI  426 (452)
Q Consensus       373 a~~VD~Sv~--GlGecP~a~------------------g---raGNaalE~vv~~L~~~Gi~t~---iDl~~L~~la~~v  426 (452)
                      -++.....+  -+|..|++.                  .   ......+++++..++..|+.+.   +|...|..+..++
T Consensus       107 Pe~aSln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~  186 (311)
T 3e02_A          107 PEVASMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFECYDVGHLYNLAHFV  186 (311)
T ss_dssp             CSEEEEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHH
T ss_pred             CCeeeecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHH
Confidence            555533322  122112110                  0   0112348888888888898763   8889999888877


Q ss_pred             HH
Q 012949          427 NK  428 (452)
Q Consensus       427 ~~  428 (452)
                      .+
T Consensus       187 ~~  188 (311)
T 3e02_A          187 DR  188 (311)
T ss_dssp             HT
T ss_pred             Hc
Confidence            66

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=82.00  E-value=2.5  Score=41.34  Aligned_cols=82  Identities=7%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEE-eCCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVH-LHDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH-~Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+++...+ ++|-++ .+++..-++..+..|-++|
T Consensus        20 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G   99 (300)
T 3eb2_A           20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG   99 (300)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   7888888999988887543 455555 4688888999999999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.+=..
T Consensus       100 adavlv~  106 (300)
T 3eb2_A          100 ADGILAI  106 (300)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9987653

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=81.95  E-value=12  Score=35.42  Aligned_cols=231  Identities=13%  Similarity=0.065  Sum_probs=116.8

Q ss_pred             cCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE
Q 012949          121 KGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL  200 (452)
Q Consensus       121 ~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l  200 (452)
                      +.++.++-|.-.++++       ..+.   .+.++.+.++|++.||+.......+.+.-.+.+++.+.+++ .++++.++
T Consensus        19 ~~~~~klgi~~~~~~~-------~~~~---~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~   87 (296)
T 2g0w_A           19 NLKKCPITISSYTLGT-------EVSF---PKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-HNMKVTEV   87 (296)
T ss_dssp             ---CCCEEECGGGGTT-------TSCH---HHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-TTCEEEEE
T ss_pred             CcCCCCceeechhcCC-------CCCH---HHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHH-cCCceEee
Confidence            4566677787777765       1344   44566778899999999753100011111244555555554 36666655


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                      .+...        |....... +.......+.++.|.+.|++.|.+... .        +.+.+...+.+.++.++|  .
T Consensus        88 ~~~~~--------~~~~~~~~-~~~~~~~~~~i~~A~~lGa~~v~~g~~-~--------~~~~~~~~~~l~~l~~~a--~  147 (296)
T 2g0w_A           88 EYITQ--------WGTAEDRT-AEQQKKEQTTFHMARLFGVKHINCGLL-E--------KIPEEQIIVALGELCDRA--E  147 (296)
T ss_dssp             ECBCC--------CSSTTTCC-HHHHHHHHHHHHHHHHHTCCEEEECCC-S--------CCCHHHHHHHHHHHHHHH--T
T ss_pred             hhhhc--------cccCChHH-HHHHHHHHHHHHHHHHcCCCEEEEcCC-C--------CCCHHHHHHHHHHHHHHh--c
Confidence            43111        10000000 000001134778888999999877321 1        124677888888888888  7


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      |+.+.  +...   +...-.+++.+.++++.+-. .--.+++ ||.=.    ..|.      . +.+.+++--..+|++|
T Consensus       148 Gv~l~--lE~~---~~~~~~~~~~~~~l~~~v~~-~~vgl~~-D~~H~~~~g~d~~------~-~~~~~~~~i~~vHl~D  213 (296)
T 2g0w_A          148 ELIIG--LEFM---PYSGVADLQAAWRVAEACGR-DNAQLIC-DTWHWARANQTAE------S-IKNVPADRIVSIQLCD  213 (296)
T ss_dssp             TSEEE--EECC---TTSSSCSHHHHHHHHHHHTC-TTEEEEE-EHHHHHHTTCCGG------G-GTTCCGGGEEEEEECB
T ss_pred             CCEEE--EEec---CCCCCCCHHHHHHHHHHhCC-CCeEEEE-ehhHhhccCCCHH------H-HHhcChhhEEEEEecC
Confidence            87654  4321   11223456667766665521 1113333 65211    1221      1 1122333346789998


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      ..+....          ...+.+..  +.+  .+| .|..+.+.++..|+..|++
T Consensus       214 ~~~~~~~----------~~~~~~~~--~r~--~pG-~G~id~~~i~~~L~~~gy~  253 (296)
T 2g0w_A          214 VHETPYK----------ELREESLH--DRL--APG-EGYGDTVGFAKILKEHGVN  253 (296)
T ss_dssp             CCSSCCS----------SHHHHHHH--BCB--CTT-SSSSCHHHHHHHHHHHTCC
T ss_pred             CCCCCch----------hhhhHHHh--cCC--CCC-CCCccHHHHHHHHHHcCCC
Confidence            7643110          00000000  011  122 5789999999999986664

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=81.90  E-value=24  Score=31.61  Aligned_cols=109  Identities=9%  Similarity=0.011  Sum_probs=66.7

Q ss_pred             cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCC
Q 012949          239 AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL--SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMG  316 (452)
Q Consensus       239 ~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~--G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~G  316 (452)
                      .|+|.|.+-.+.+               +..-.+.++..|+.  +.++.+++...        ..++   .+++.+.++|
T Consensus        24 ~~~diie~G~p~~---------------~~~g~~~i~~ir~~~~~~~i~~~~~~~--------~~~~---~~~~~~~~~G   77 (211)
T 3f4w_A           24 DDVDIIEVGTPFL---------------IREGVNAIKAIKEKYPHKEVLADAKIM--------DGGH---FESQLLFDAG   77 (211)
T ss_dssp             GGCSEEEECHHHH---------------HHHTTHHHHHHHHHCTTSEEEEEEEEC--------SCHH---HHHHHHHHTT
T ss_pred             cCccEEEeCcHHH---------------HhccHHHHHHHHHhCCCCEEEEEEEec--------cchH---HHHHHHHhcC
Confidence            5788877765211               12223455666664  67776666542        1122   2478888999


Q ss_pred             cCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeec
Q 012949          317 CFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       317 ad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~S  379 (452)
                      +|.|.+.+..+   ++.+.++++.+++. + .++.+-.++- ......+..+.++|+++|-+.
T Consensus        78 ad~v~v~~~~~---~~~~~~~~~~~~~~-g-~~~~v~~~~~-~t~~~~~~~~~~~g~d~i~v~  134 (211)
T 3f4w_A           78 ADYVTVLGVTD---VLTIQSCIRAAKEA-G-KQVVVDMICV-DDLPARVRLLEEAGADMLAVH  134 (211)
T ss_dssp             CSEEEEETTSC---HHHHHHHHHHHHHH-T-CEEEEECTTC-SSHHHHHHHHHHHTCCEEEEE
T ss_pred             CCEEEEeCCCC---hhHHHHHHHHHHHc-C-CeEEEEecCC-CCHHHHHHHHHHcCCCEEEEc
Confidence            99999987643   46667778877764 3 3444432221 223455788889999998553

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=81.78  E-value=6.4  Score=36.86  Aligned_cols=115  Identities=13%  Similarity=0.047  Sum_probs=61.1

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC-HHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP-PSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d-~e~l~~~a~  310 (452)
                      .++.+.++|+|.|.+......               +.+..+++.+++.|..|.  +-...+.+.. ... .+.+..+++
T Consensus        83 ~~~~~~~~gad~vtvh~~~G~---------------~~l~~~~~~~~~~g~~v~--vLt~~s~~~~-~~~~~~~~~~~a~  144 (228)
T 3m47_A           83 ICRATFKAGADAIIVHGFPGA---------------DSVRACLNVAEEMGREVF--LLTEMSHPGA-EMFIQGAADEIAR  144 (228)
T ss_dssp             HHHHHHHTTCSEEEEESTTCH---------------HHHHHHHHHHHHHTCEEE--EECCCCSGGG-GTTHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEeccCCH---------------HHHHHHHHHHHhcCCCeE--EEEeCCCccH-HHHHHHHHHHHHH
Confidence            667788899999988764432               334456677777776553  2111222221 111 145566888


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-ccEEEEeCCCcCc--HHHHHHHHHHcCCCEEee
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-EKLAVHLHDTYGQ--SLPNILISLQMGISTVDC  378 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-~~l~vH~Hnd~Gl--A~ANaLaAl~aGa~~VD~  378 (452)
                      ...+.|++.+..    |.-.|+++..    +++..|. ..+ +    +.|-  .-++. .++++|++++=+
T Consensus       145 ~a~~~G~~GvV~----~at~~~e~~~----ir~~~~~~~~i-v----~PGI~~~g~~p-~~~~aGad~iVv  201 (228)
T 3m47_A          145 MGVDLGVKNYVG----PSTRPERLSR----LREIIGQDSFL-I----SPGVGAQGGDP-GETLRFADAIIV  201 (228)
T ss_dssp             HHHHTTCCEEEC----CSSCHHHHHH----HHHHHCSSSEE-E----ECC----------CGGGTCSEEEE
T ss_pred             HHHHhCCcEEEE----CCCChHHHHH----HHHhcCCCCEE-E----ecCcCcCCCCH-hHHHcCCCEEEE
Confidence            888999987653    3334666554    4444442 111 0    1111  11244 888999986533

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=81.72  E-value=3.8  Score=39.76  Aligned_cols=97  Identities=21%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.+++|.+.|++.|-+.+..   +.........+..|+++.+++++|+++|+.|.+      |   ++ .+.+.+..+++
T Consensus       167 ~qI~aA~~~GAd~IELhTG~---YA~a~~~~~~~~el~rl~~aA~~A~~lGL~VnA------G---HG-L~y~Nv~~ia~  233 (278)
T 3gk0_A          167 AQIRAAHETGAPVIELHTGR---YADAHDAAEQQREFERIATGVDAGIALGLKVNA------G---HG-LHYTNVQAIAA  233 (278)
T ss_dssp             HHHHHHHHHTCSEEEECCHH---HHTCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE------C---TT-CCTTTHHHHHT
T ss_pred             HHHHHHHHhCcCEEEEecch---hhccCCchhHHHHHHHHHHHHHHHHHcCCEEec------C---CC-CCHHHHHHHHh
Confidence            48999999999999997641   111100112556899999999999999999872      1   22 33444544432


Q ss_pred             HHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHHH
Q 012949          311 ELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       311 ~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~~  343 (452)
                       +  -+...++|     ++.+=++.+..|+++.+.+++
T Consensus       234 -i--p~i~ElnIGHaiIa~Al~~Gl~~AVr~mk~lm~~  268 (278)
T 3gk0_A          234 -L--PGIAELNIGHAIVAHAVFVGWDNAVREMKAIMVA  268 (278)
T ss_dssp             -C--TTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             -C--CCCeEEecCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             1  24677776     455666677777777766654

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=81.58  E-value=5.7  Score=38.95  Aligned_cols=22  Identities=14%  Similarity=0.083  Sum_probs=10.4

Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE
Q 012949          301 PPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      +.+.-.++++.+.++|++.|-+
T Consensus        26 ~~e~k~~i~~~L~~~Gv~~IE~   47 (307)
T 1ydo_A           26 ATEDKITWINQLSRTGLSYIEI   47 (307)
T ss_dssp             CHHHHHHHHHHHHTTTCSEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEE
Confidence            3444444455555555444444

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=81.55  E-value=13  Score=38.63  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=72.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +-+++|++++.+...+..++++               +++.++...|++.|..|.+  +    .+     +.+.+.++.+
T Consensus       166 evleaALea~a~~~plI~sat~---------------dn~e~m~~lAa~y~~pVi~--~----~~-----dl~~lkelv~  219 (446)
T 4djd_C          166 DVLKEALAGVADRKPLLYAATG---------------ANYEAMTALAKENNCPLAV--Y----GN-----GLEELAELVD  219 (446)
T ss_dssp             HHHHHHHGGGGGGCCEEEEECT---------------TTHHHHHHHHHHTTCCEEE--E----CS-----SHHHHHHHHH
T ss_pred             HHHHHHHHhhcCcCCeeEecch---------------hhHHHHHHHHHHcCCcEEE--E----ec-----cHHHHHHHHH
Confidence            3778899888776556666553               4556677888999988762  2    11     6789999999


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh----------CCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV----------VPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~----------~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.++|++.|.| |...... ...++....+|..          +|.  |.+-...|--+-..-+...+..|+++|
T Consensus       220 ~a~~~GI~~IvL-DPG~~g~-~~t~~~~~~iRr~AL~~~d~~LgyPv--i~~~sr~d~~~E~t~A~~~i~kga~Iv  291 (446)
T 4djd_C          220 KIVALGHKQLVL-DPGARET-SRAIADFTQIRRLAIKKRFRSFGYPI--IALTTAANPLDEVLQAVNYVTKYASLV  291 (446)
T ss_dssp             HHHHTTCCCEEE-ECCCCSH-HHHHHHHHHHHHHHHHSCCGGGCSCB--EEECCCSSHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHCCCCcEEE-CCCchhH-HHHHHHHHHHHHHhhhccCcccCCCE--EeccCCccHHHHHHHHHHHHHcCCeEE
Confidence            999999998877 6543222 2333322223332          242  555566553333444455667788765

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=81.50  E-value=28  Score=33.88  Aligned_cols=100  Identities=14%  Similarity=0.122  Sum_probs=61.7

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++.
T Consensus        34 lv~~li~~Gv~gl~v~GtTGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaGv---------g~~~t~~ai~la~~   98 (309)
T 3fkr_A           34 AVDFMIDAGSDGLCILANFSEQ-----FAITDDERDVLTRTILEHVAG-RVPVIVTT---------SHYSTQVCAARSLR   98 (309)
T ss_dssp             HHHHHHHTTCSCEEESSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECccccCc-----ccCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCchHHHHHHHHHH
Confidence            5667778899988887666664     235666666666555555532 34443211         22345677778888


Q ss_pred             HHHCCcCEEEEcCCcC----CCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G----~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+-+.=..=    -.+++.+.+.++.+.+..+
T Consensus        99 A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a~~  137 (309)
T 3fkr_A           99 AQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDAIA  137 (309)
T ss_dssp             HHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHHCS
T ss_pred             HHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHhcC
Confidence            8888888666543331    2356777777777766653

>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3

Probab=81.45  E-value=17  Score=34.35  Aligned_cols=57  Identities=9%  Similarity=-0.139  Sum_probs=42.0

Q ss_pred             cHHhHHHHH-HcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          229 YLQGFEAAI-AAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       229 ~~~~ie~a~-~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                      +.++++..+ +.|+..||+.+.-.+.   ...-.+.+..++.+.+++++|++.|+.|...+
T Consensus        40 ~~~d~~~l~~~~G~N~vR~~~~~~~~---~~~~~~~~~~~~~ld~~v~~a~~~Gi~vild~   97 (291)
T 1egz_A           40 TADTVASLKKDWKSSIVRAAMGVQES---GGYLQDPAGNKAKVERVVDAAIANDMYAIIGW   97 (291)
T ss_dssp             SHHHHHHHHHTTCCCEEEEEEECSST---TSTTTCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHHHHHHcCCCEEEEecccccc---CCCcCCHHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence            346898888 8999999998764310   01111345678999999999999999987655

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=81.40  E-value=20  Score=35.90  Aligned_cols=124  Identities=13%  Similarity=0.055  Sum_probs=78.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC--------------CCC---------------C----CCCHH---
Q 012949          260 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC--------------PVE---------------G----AIPPS---  303 (452)
Q Consensus       260 ~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~--------------p~~---------------~----r~d~e---  303 (452)
                      +...++.++..+++++.+++.|-.+.+-|... |-              |-+               .    ..+.+   
T Consensus        71 gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~-Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~  149 (362)
T 4ab4_A           71 GIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHV-GRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEIN  149 (362)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCCEEEEEeccC-cccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHH
Confidence            44456778889999999999999887777652 10              000               0    01222   


Q ss_pred             ----HHHHHHHHHHHCCcCEEEEcCC-------------------cCCCc---HHHHHHHHHHHHHhCCCccEEEEeCCC
Q 012949          304 ----KVAYVAKELHDMGCFEISLGDT-------------------IGVGT---PGTVVPMLEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       304 ----~l~~~a~~l~~~Gad~I~L~DT-------------------~G~~~---P~~v~~li~~l~~~~p~~~l~vH~Hnd  357 (452)
                          .+.+.|+.+.++|.|.|.|-=.                   .|...   +.-+.++|+++++.++..+|.+-.+-+
T Consensus       150 ~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~  229 (362)
T 4ab4_A          150 DIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPR  229 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecc
Confidence                3445667788999998887433                   34322   234678899999988644777766643


Q ss_pred             --c-Cc--------HHHHHHHHHHcCCCEEeecccCCC
Q 012949          358 --Y-GQ--------SLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       358 --~-Gl--------A~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                        + |+        ++.-+.+.-++|+++|+.+-...|
T Consensus       230 ~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~  267 (362)
T 4ab4_A          230 ADAHDMGDADRAETFTYVARELGKRGIAFICSREREAD  267 (362)
T ss_dssp             CCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred             ccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence              1 11        222233344689999999876533

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=81.36  E-value=5  Score=38.96  Aligned_cols=37  Identities=11%  Similarity=0.123  Sum_probs=20.5

Q ss_pred             EEEEe-cCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 012949          244 VAIFA-SASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPV  284 (452)
Q Consensus       244 V~i~~-s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V  284 (452)
                      |.|+. ..-|-++......+.++.+    ++++...+.|++.
T Consensus         6 v~i~D~tlRDG~Q~~~~~~~~e~k~----~i~~~L~~~Gv~~   43 (298)
T 2cw6_A            6 VKIVEVGPRDGLQNEKNIVSTPVKI----KLIDMLSEAGLSV   43 (298)
T ss_dssp             CEEEECTTTHHHHTCSSCCCHHHHH----HHHHHHHHTTCSE
T ss_pred             eEEEECCCCcccCCCCCCCCHHHHH----HHHHHHHHcCcCE
Confidence            44543 4555544444556666555    3445556678764

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=81.36  E-value=24  Score=35.87  Aligned_cols=120  Identities=11%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecC---------------CCC-----------------CCCCH-------
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGC---------------PVE-----------------GAIPP-------  302 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~---------------p~~-----------------~r~d~-------  302 (452)
                      ..++.++..+++++.+++.|-++.+-|..+ |-               |-+                 ....|       
T Consensus        87 ~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~e  165 (402)
T 2hsa_B           87 FTKEQVREWKKIVDVVHAKGAVIFCQLWHV-GRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYE  165 (402)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHH
Confidence            345667778888889999998877667641 10               000                 00123       


Q ss_pred             -----HHHHHHHHHHHHCCcCEEEEc-------------------CCcCCCc---HHHHHHHHHHHHHhCCCccEEEEeC
Q 012949          303 -----SKVAYVAKELHDMGCFEISLG-------------------DTIGVGT---PGTVVPMLEAVMAVVPVEKLAVHLH  355 (452)
Q Consensus       303 -----e~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~li~~l~~~~p~~~l~vH~H  355 (452)
                           +.+.+.|+.+.++|.|.|.|-                   |-.|...   +.-+.++|+++++.++..+|.+-..
T Consensus       166 I~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls  245 (402)
T 2hsa_B          166 ISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVS  245 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence                 567778888999999988762                   3344433   4447899999999987447888754


Q ss_pred             CC-------cCc----HHHHHHHHHHcC------CCEEeecccC
Q 012949          356 DT-------YGQ----SLPNILISLQMG------ISTVDCSVAG  382 (452)
Q Consensus       356 nd-------~Gl----A~ANaLaAl~aG------a~~VD~Sv~G  382 (452)
                      -+       .|.    ++.-+-+.-++|      +++|+.+-..
T Consensus       246 ~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~  289 (402)
T 2hsa_B          246 PAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR  289 (402)
T ss_dssp             SSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCC
T ss_pred             cccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCc
Confidence            32       223    222333334688      9999997543

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=81.09  E-value=22  Score=33.11  Aligned_cols=141  Identities=18%  Similarity=0.151  Sum_probs=87.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -++.|.+.|++-|-+.-.    +            +..+   .+..+..++.    ++.+.|+|.. ..+.+....-++.
T Consensus        24 l~~~a~~~~~~aVcv~p~----~------------v~~~---~~~l~~~~v~----v~~vigFP~G-~~~~~~k~~e~~~   79 (220)
T 1ub3_A           24 AAEEALEYGFYGLCIPPS----Y------------VAWV---RARYPHAPFR----LVTVVGFPLG-YQEKEVKALEAAL   79 (220)
T ss_dssp             HHHHHHHHTCSEEECCGG----G------------HHHH---HHHCTTCSSE----EEEEESTTTC-CSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEECHH----H------------HHHH---HHHhCCCCce----EEEEecCCCC-CCchHHHHHHHHH
Confidence            567778888887765421    1            1111   1222222344    3444566754 4556666677888


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCC--cc--EEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPV--EK--LAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~--~~--l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.|||.|-+.=-+|.+   .-..+.+-+..+++..+.  ++  |+.-..++-- =...+..|.++|||+|=++- |. 
T Consensus        80 Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~-i~~a~~ia~eaGADfVKTsT-Gf-  156 (220)
T 1ub3_A           80 ACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEE-IARLAEAAIRGGADFLKTST-GF-  156 (220)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHH-HHHHHHHHHHHTCSEEECCC-SS-
T ss_pred             HHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHH-HHHHHHHHHHhCCCEEEeCC-CC-
Confidence            999999999887777753   567788888888887643  22  2323333222 23456678899999999885 22 


Q ss_pred             CCCCCCCCCCcccHHHHHHHHH
Q 012949          385 GCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~  406 (452)
                             .+|++..|++-.+.+
T Consensus       157 -------~~~gat~~dv~~m~~  171 (220)
T 1ub3_A          157 -------GPRGASLEDVALLVR  171 (220)
T ss_dssp             -------SSCCCCHHHHHHHHH
T ss_pred             -------CCCCCCHHHHHHHHH
Confidence                   235677787777665

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=81.01  E-value=8.8  Score=38.19  Aligned_cols=91  Identities=18%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             hCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEc----------CCcCCC---cHHHHHHHHHHHHHhC
Q 012949          279 VLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLG----------DTIGVG---TPGTVVPMLEAVMAVV  345 (452)
Q Consensus       279 ~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~li~~l~~~~  345 (452)
                      ..+.++.+.|.   |      .+++.+.+.++.+.++|+|.|.|-          |-.|..   .|..+.++++.+++.+
T Consensus        55 ~~~~p~~vQL~---g------~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v  125 (350)
T 3b0p_A           55 PEEHPIALQLA---G------SDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV  125 (350)
T ss_dssp             GGGCSEEEEEE---C------SCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEeC---C------CCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh
Confidence            44556655453   2      257888888888888999877664          444443   4888999999999887


Q ss_pred             CCccEEEEe---CCCcC---cHHHHHHHHHHcCCCEEeec
Q 012949          346 PVEKLAVHL---HDTYG---QSLPNILISLQMGISTVDCS  379 (452)
Q Consensus       346 p~~~l~vH~---Hnd~G---lA~ANaLaAl~aGa~~VD~S  379 (452)
                      . .+|.+-.   -++..   ..+.-+..+.++|++.|.++
T Consensus       126 ~-~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~  164 (350)
T 3b0p_A          126 R-VPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVH  164 (350)
T ss_dssp             S-SCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             C-CceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEe
Confidence            3 4677732   23322   23444556668999988875

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=80.98  E-value=12  Score=35.27  Aligned_cols=130  Identities=18%  Similarity=0.127  Sum_probs=75.2

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      .+.++.|.+.|++.|-++--... ++-...-...+.+.+++..++  +++....                          
T Consensus        56 ~~aa~~L~~ag~d~i~~aCtsas-~~~G~~~~~~~~~~l~~~~~i--Pv~~~~~--------------------------  106 (240)
T 3ixl_A           56 VDHARRLQKQGAAVVSLMCTSLS-FYRGAAFNAALTVAMREATGL--PCTTMST--------------------------  106 (240)
T ss_dssp             HHHHHHHHHTTEEEEEECCHHHH-HTTCHHHHHHHHHHHHHHHSS--CEEEHHH--------------------------
T ss_pred             HHHHHHhccCCCCEEEECCcHHH-HhcccchHHHHHHHHHhccCC--CEECHHH--------------------------
Confidence            44478898999999999621100 000000112455666654343  3333211                          


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC---CCCCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV---EGAIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~---~~r~d~e~l~~  307 (452)
                      .-++++...|+++|.+..+-..               +.-....++.++.|++|..--+  ++.++   .++.+++.+.+
T Consensus       107 A~~~al~~~g~~rvglltpy~~---------------~~~~~~~~~l~~~Giev~~~~~--~~~~~~~~~~~~~~~~~~~  169 (240)
T 3ixl_A          107 AVLNGLRALGVRRVALATAYID---------------DVNERLAAFLAEESLVPTGCRS--LGITGVEAMARVDTATLVD  169 (240)
T ss_dssp             HHHHHHHHTTCSEEEEEESSCH---------------HHHHHHHHHHHHTTCEEEEEEE--CCCCCHHHHHTCCHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEEeCChH---------------HHHHHHHHHHHHCCCEEecccc--CCCCCcchhhcCCHHHHHH
Confidence            1456667789999999876322               1112334566678998753322  22222   23567888888


Q ss_pred             HHHH-H-HHCCcCEEEEcCCc
Q 012949          308 VAKE-L-HDMGCFEISLGDTI  326 (452)
Q Consensus       308 ~a~~-l-~~~Gad~I~L~DT~  326 (452)
                      +++. + .+-|+|.|.|.-|-
T Consensus       170 ~~~~~l~~~~~adaivL~CT~  190 (240)
T 3ixl_A          170 LCVRAFEAAPDSDGILLSSGG  190 (240)
T ss_dssp             HHHHHHHTSTTCSEEEEECTT
T ss_pred             HHHHHhhcCCCCCEEEEeCCC
Confidence            8888 6 66789999998663

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=80.93  E-value=11  Score=35.00  Aligned_cols=118  Identities=17%  Similarity=0.090  Sum_probs=66.4

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCC-----CCCHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEG-----AIPPSK  304 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~-----r~d~e~  304 (452)
                      +.++.+.+.|.+.|.++.......  .....+.    +.+.++.+.+++.|+ .+.+.-.+..  ...+     ....+.
T Consensus        18 ~~~~~~~~~G~~~vEl~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~gl~~~~~h~~~~~--~l~s~~~~r~~~~~~   89 (270)
T 3aam_A           18 GAVEEATALGLTAFQIFAKSPRSW--RPRALSP----AEVEAFRALREASGGLPAVIHASYLV--NLGAEGELWEKSVAS   89 (270)
T ss_dssp             HHHHHHHHHTCSCEEEESSCTTCC--SCCCCCH----HHHHHHHHHHHHTTCCCEEEECCTTC--CTTCSSTHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCCCCcC--cCCCCCH----HHHHHHHHHHHHcCCceEEEecCccc--CCCCCHHHHHHHHHH
Confidence            367889999999999965321100  0011121    234456677888998 5542211110  0111     012345


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCC---CccEEEEeCCCc
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVP---VEKLAVHLHDTY  358 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p---~~~l~vH~Hnd~  358 (452)
                      +.+.++.+.++|+..|.+--  |...+..+.+.++.+.+...   ++.|.++.|+..
T Consensus        90 ~~~~i~~a~~lGa~~vv~h~--g~~~~~~~~~~l~~l~~~a~~~~gv~l~lEn~~~~  144 (270)
T 3aam_A           90 LADDLEKAALLGVEYVVVHP--GSGRPERVKEGALKALRLAGVRSRPVLLVENTAGG  144 (270)
T ss_dssp             HHHHHHHHHHHTCCEEEECC--CBSCHHHHHHHHHHHHHHHTCCSSSEEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCEEEECC--CCCCHHHHHHHHHHHHHhhcccCCCEEEEecCCCC
Confidence            67777888889999887631  22234566666666655542   567888888544

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=80.87  E-value=15  Score=35.48  Aligned_cols=100  Identities=16%  Similarity=0.117  Sum_probs=63.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++
T Consensus        26 ~lv~~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-r~pvi~Gv---------g~~~t~~ai~la~   90 (291)
T 3a5f_A           26 ELIEWHIKSKTDAIIVCGTTGEA-----TTMTETERKETIKFVIDKVNK-RIPVIAGT---------GSNNTAASIAMSK   90 (291)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEeC---------CcccHHHHHHHHH
Confidence            36677788999998887776664     335777777766666666543 34554211         2345677888999


Q ss_pred             HHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhC
Q 012949          311 ELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~  345 (452)
                      .+.++|+|.+-+. =..--.+++.+.+.++.+.+..
T Consensus        91 ~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~  126 (291)
T 3a5f_A           91 WAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAV  126 (291)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGC
T ss_pred             HHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999866543 3333345666666666665554

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=80.70  E-value=28  Score=33.54  Aligned_cols=100  Identities=13%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++..++.|++.|-+.-+..|.     .-.|.+|-.+-++.+++.++. .++|.+.+         +..+.+...++++.
T Consensus        26 lv~~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-r~pviaGv---------g~~~t~~ai~la~~   90 (292)
T 2vc6_A           26 LVEWQIEEGSFGLVPCGTTGES-----PTLSKSEHEQVVEITIKTANG-RVPVIAGA---------GSNSTAEAIAFVRH   90 (292)
T ss_dssp             HHHHHHHTTCSEEETTSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSCBEEEC---------CCSSHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCccHHHHHHHHHH
Confidence            6677778899988777666664     235667666666666655543 24443211         22345677778888


Q ss_pred             HHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCC
Q 012949          312 LHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVP  346 (452)
Q Consensus       312 l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p  346 (452)
                      +.++|+|.+-+ +=..--.+++.+.+.++.+.+..+
T Consensus        91 A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~  126 (292)
T 2vc6_A           91 AQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAAST  126 (292)
T ss_dssp             HHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS
T ss_pred             HHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            88888885544 333333466777777777777654

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=80.67  E-value=10  Score=37.95  Aligned_cols=123  Identities=18%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeec---CC-----------------------CC-----C------CCCH
Q 012949          260 NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVG---CP-----------------------VE-----G------AIPP  302 (452)
Q Consensus       260 ~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g---~p-----------------------~~-----~------r~d~  302 (452)
                      +...++.++..+++++.+++.|-.+.+-|.+. |   .+                       -.     +      ..+.
T Consensus        72 ~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~  150 (363)
T 3l5l_A           72 GIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHA-GRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTL  150 (363)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCH
T ss_pred             eecCHHHHHHHHHHHHHHHhcCCEEEEEeccC-CccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCH
Confidence            44456778889999999999999887767653 1   00                       00     0      0122


Q ss_pred             H-------HHHHHHHHHHHCCcCEEEEc-------------------CCcCCCcHH---HHHHHHHHHHHhCC-CccEEE
Q 012949          303 S-------KVAYVAKELHDMGCFEISLG-------------------DTIGVGTPG---TVVPMLEAVMAVVP-VEKLAV  352 (452)
Q Consensus       303 e-------~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~P~---~v~~li~~l~~~~p-~~~l~v  352 (452)
                      +       .+.+.|+.+.++|.|.|.|-                   |-.|...-.   -+.++|+++++.++ +.+|.+
T Consensus       151 ~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~v  230 (363)
T 3l5l_A          151 DDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTA  230 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEE
Confidence            2       34456677888999988774                   444443222   36788999999886 345666


Q ss_pred             EeCC----CcC-cHHHH----HHHHHHcCCCEEeecccCC
Q 012949          353 HLHD----TYG-QSLPN----ILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       353 H~Hn----d~G-lA~AN----aLaAl~aGa~~VD~Sv~Gl  383 (452)
                      -..-    +-| .-...    +-..-++|+++|+.+..+.
T Consensus       231 Ris~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~  270 (363)
T 3l5l_A          231 RFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFT  270 (363)
T ss_dssp             EEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence            4431    113 22232    3334468999999987653

>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}

Probab=80.60  E-value=66  Score=34.96  Aligned_cols=102  Identities=15%  Similarity=0.089  Sum_probs=57.3

Q ss_pred             HhHHHHHHcCCC--EEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          231 QGFEAAIAAGAK--EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       231 ~~ie~a~~~Gi~--~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                      ..+..|+++|++  .+.++.+.          ++.++ ++   .++ .+++.|..+...    +    .   +.+.+..+
T Consensus       153 gEl~~al~aG~~p~~iIv~nG~----------K~~ee-I~---~Al-~~~~~G~~v~iv----V----D---S~~ELe~L  206 (666)
T 3nzq_A          153 AELMAVLAHAGMTRSVIVCNGY----------KDREY-IR---LAL-IGEKMGHKVYLV----I----E---KMSEIAIV  206 (666)
T ss_dssp             HHHHHHHHHHTTSCCEEEECSC----------CCHHH-HH---HHH-HHHHTTCEEEEE----E----C---SHHHHHHH
T ss_pred             HHHHHHHHcCCCCCcEEEEcCC----------CCHHH-HH---HHH-HhhccCCCEEEE----E----C---CHHHHHHH
Confidence            478888888875  35455432          22221 21   222 223567655321    2    1   35677777


Q ss_pred             HHHHHHCCc--C-EEEE--c--------CCcC-----CCcHHHHHHHHHHHHHhCCCcc--EEEEeCCCcC
Q 012949          309 AKELHDMGC--F-EISL--G--------DTIG-----VGTPGTVVPMLEAVMAVVPVEK--LAVHLHDTYG  359 (452)
Q Consensus       309 a~~l~~~Ga--d-~I~L--~--------DT~G-----~~~P~~v~~li~~l~~~~p~~~--l~vH~Hnd~G  359 (452)
                      .+.+.+.|.  . .|++  .        +|.|     ..+|.++.++++.+++ .+...  .++|+|---+
T Consensus       207 ~~~A~~~g~~~~V~LRVnp~~~~~~~~i~TG~~~SKFGi~~~e~~~ll~~l~~-~~~L~~l~GLHfHiGSq  276 (666)
T 3nzq_A          207 LDEAERLNVVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLRE-AGRLDSLQLLHFHLGSQ  276 (666)
T ss_dssp             HHHHHHTTCCCCEEEEBCCSSSCSSTTCSSSSSCCCSCBCHHHHHHHHHHHHH-TTCTTTEEEEECCCCSS
T ss_pred             HHHHHHcCCCceEEEEEEecCCCCcCccccCCCCCcCcCCHHHHHHHHHHHHh-CCCCCCeEEEEEECCCC
Confidence            777777663  2 3333  1        2221     2478889999988876 45543  5999997655

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=80.52  E-value=12  Score=36.55  Aligned_cols=134  Identities=16%  Similarity=0.052  Sum_probs=83.3

Q ss_pred             HHHHHHcCCCEEEEEe-cCChHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFA-SASEAFSKSN-INCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~-s~Sd~~~~~~-~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ...+.++|++.|.+.- +++-.+-..- .-.|.++.+..++.+.+.   ...+|.+.      .|... -+++.+.+.++
T Consensus        28 A~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~---~~~PviaD------~d~Gy-g~~~~~~~~v~   97 (290)
T 2hjp_A           28 AKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIAST---VSIPLIAD------IDTGF-GNAVNVHYVVP   97 (290)
T ss_dssp             HHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTT---CSSCEEEE------CTTTT-SSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEEE------CCCCC-CCHHHHHHHHH
Confidence            3455568999888763 3332211111 235788888776655443   34555422      23332 27889999999


Q ss_pred             HHHHCCcCEEEEcCCcC------------CCcHH-HHHHHHHHHHHhC--CCccEEEEeCCC-----cCcHHHHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIG------------VGTPG-TVVPMLEAVMAVV--PVEKLAVHLHDT-----YGQSLPNILISLQ  370 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G------------~~~P~-~v~~li~~l~~~~--p~~~l~vH~Hnd-----~GlA~ANaLaAl~  370 (452)
                      .+.++|+..|.|-|..+            .+.|. +..+.|+++++..  ++..|---.-..     .--++.-+.+-.+
T Consensus        98 ~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~e  177 (290)
T 2hjp_A           98 QYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAYEE  177 (290)
T ss_dssp             HHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHHHH
Confidence            99999999999999973            14444 5677788887763  332233333222     2346677778889


Q ss_pred             cCCCEE
Q 012949          371 MGISTV  376 (452)
Q Consensus       371 aGa~~V  376 (452)
                      |||+.|
T Consensus       178 AGAd~i  183 (290)
T 2hjp_A          178 AGADAI  183 (290)
T ss_dssp             TTCSEE
T ss_pred             cCCcEE
Confidence            999955

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=80.44  E-value=21  Score=34.89  Aligned_cols=182  Identities=12%  Similarity=0.109  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHHC----CCCEEEEecCCC-CCcccc-cC--CHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhh
Q 012949          146 PTGVKVELIRRLVSS----GLPVVEATSFVS-PKWVPQ-LA--DARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQ  216 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~----Gv~~IEvG~~~s-~~~~p~-~~--D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~  216 (452)
                      +.++.+++++.|.++    |+..+=-++|-- |+-.|. +.  .-++=++.+++.. ...+.+++--..           
T Consensus        29 ~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev~d-----------   97 (288)
T 3tml_A           29 SEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDVHS-----------   97 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEEECCS-----------
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCC-----------
Confidence            788999999999876    887664443321 211110 10  1123334444321 223333331111           


Q ss_pred             ccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC
Q 012949          217 CHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV  296 (452)
Q Consensus       217 ~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~  296 (452)
                                   .+.++.+.+. ++.+.|...  +..   |        .    ++++++-+.|.+|.  ++.      
T Consensus        98 -------------~~~v~~l~~~-vd~lkIgA~--~~~---n--------~----~LLr~~a~~gkPVi--lK~------  138 (288)
T 3tml_A           98 -------------IDEIEQVASV-VDVLQTPAF--LCR---Q--------T----DFIHACARSGKPVN--IKK------  138 (288)
T ss_dssp             -------------GGGHHHHHHH-CSEEEECGG--GTT---C--------H----HHHHHHHTSSSCEE--EEC------
T ss_pred             -------------HHHHHHHHHh-CCEEEECcc--ccc---C--------H----HHHHHHHccCCcEE--EeC------
Confidence                         1366667777 888887642  110   0        1    23445557888876  332      


Q ss_pred             CCC-CCHHHHHHHHHHHHHCCc------CEEEEcCCcCCCcHH----HHHHHHHHHHHhCCCccEEE-EeCC--------
Q 012949          297 EGA-IPPSKVAYVAKELHDMGC------FEISLGDTIGVGTPG----TVVPMLEAVMAVVPVEKLAV-HLHD--------  356 (452)
Q Consensus       297 ~~r-~d~e~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~----~v~~li~~l~~~~p~~~l~v-H~Hn--------  356 (452)
                       +. .+++++...++.+.+.|.      +.|.|+.-.-...+.    .++. |..+++ + ..+|.+ +.|-        
T Consensus       139 -G~~~t~~e~~~ave~i~~~Gn~~~~~~~~i~L~erg~~y~~~~~~vdl~~-i~~lk~-~-~~pV~~D~sHs~q~p~~~~  214 (288)
T 3tml_A          139 -GQFLAPHDMKNVIDKARDAAREAGLSEDRFMACERGVSFGYNNLVSDMRS-LAIMRE-T-NAPVVFDATHSVQLPGGQG  214 (288)
T ss_dssp             -CTTCCTTHHHHHHHHHHHHHHTTTCCSCCEEEEECCEECSSSCEECCHHH-HHHGGG-G-SSCEEEEHHHHTCCCC---
T ss_pred             -CCCCCHHHHHHHHHHHHHcCCCccCCCCcEEEEeCCCCCCCCcCcCCHHH-HHHHHh-c-CCcEEEcCCcccccCCccc
Confidence             23 367788888888888887      767777632211122    2333 445665 5 457888 7774        


Q ss_pred             -----CcCcHHHHHHHHHHcCCC--EEeeccc
Q 012949          357 -----TYGQSLPNILISLQMGIS--TVDCSVA  381 (452)
Q Consensus       357 -----d~GlA~ANaLaAl~aGa~--~VD~Sv~  381 (452)
                           ++.+-..-+++|+.+||+  .|+.=..
T Consensus       215 ~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~~  246 (288)
T 3tml_A          215 TSSGGQREFVPVLARAAVATGVAGLFMETHPN  246 (288)
T ss_dssp             -----CTTHHHHHHHHHHHHCCSEEEEEEESS
T ss_pred             CCCCCchhhHHHHHHHHHHcCCCEEEEeeccC
Confidence                 223347789999999999  7765443

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=80.36  E-value=23  Score=34.95  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=73.2

Q ss_pred             hHHHHHHcCCCEEEEEec-CChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFAS-ASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s-~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      ..+..++.|++.|.|-.. .-+-........+.++-++++..+|+..++. ++.+.      +   |..  .+    +++
T Consensus        54 ~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpIS------I---DT~--~~----~Va  118 (314)
T 3tr9_A           54 TAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLIS------V---DTS--RP----RVM  118 (314)
T ss_dssp             HHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEE------E---ECS--CH----HHH
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEE------E---eCC--CH----HHH
Confidence            455667899999999852 2211000000124567788888999888764 65543      1   222  22    566


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc----------------HHHHHHHHHHcCC
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ----------------SLPNILISLQMGI  373 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl----------------A~ANaLaAl~aGa  373 (452)
                      +++.++|++.|+  |-.|...| ++.++++..  ..|  -+-.|...+...                .....-.|.++|+
T Consensus       119 ~aAl~aGa~iIN--DVsg~~~~-~m~~v~a~~--g~~--vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI  191 (314)
T 3tr9_A          119 REAVNTGADMIN--DQRALQLD-DALTTVSAL--KTP--VCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGI  191 (314)
T ss_dssp             HHHHHHTCCEEE--ETTTTCST-THHHHHHHH--TCC--EEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCEEE--ECCCCCch-HHHHHHHHh--CCe--EEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCC
Confidence            777778999664  77777655 444444432  133  355676544221                2234556788999


Q ss_pred             C----EEeecc
Q 012949          374 S----TVDCSV  380 (452)
Q Consensus       374 ~----~VD~Sv  380 (452)
                      +    ++|-.+
T Consensus       192 ~~~~IilDPG~  202 (314)
T 3tr9_A          192 SEDRIIIDPGF  202 (314)
T ss_dssp             CGGGEEEECCC
T ss_pred             CHhHEEEeCCC
Confidence            5    569854

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=80.20  E-value=5.7  Score=38.67  Aligned_cols=38  Identities=26%  Similarity=0.526  Sum_probs=22.3

Q ss_pred             HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH---cCCCC
Q 012949          369 LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS---GLGVE  411 (452)
Q Consensus       369 l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~---~~Gi~  411 (452)
                      -+.|.. |.+.|.=..+||++    |-++.|.++..++   ..|.+
T Consensus       134 ~~~G~~-V~~~l~~~~~~e~~----~~~~~~~~~~~~~~~~~~G~d  174 (302)
T 2ftp_A          134 RQHQVR-VRGYISCVLGCPYD----GDVDPRQVAWVARELQQMGCY  174 (302)
T ss_dssp             HHTTCE-EEEEEECTTCBTTT----BCCCHHHHHHHHHHHHHTTCS
T ss_pred             HHCCCe-EEEEEEEEeeCCcC----CCCCHHHHHHHHHHHHHcCCC
Confidence            356654 56666555566764    3466666666665   46654

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=80.03  E-value=46  Score=32.36  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=74.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC-CCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA-IPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r-~d~e~l~~~a~  310 (452)
                      .++.+.+ .++.+.|...  +..   +        .    ++++++-+.|.+|.  ++.       +. .+++.+...++
T Consensus       101 ~~~~l~~-~vd~~kIgA~--~~~---n--------~----~Ll~~~a~~~kPV~--lk~-------G~~~t~~ei~~Av~  153 (292)
T 1o60_A          101 QCQPVAD-VVDIIQLPAF--LAR---Q--------T----DLVEAMAKTGAVIN--VKK-------PQFLSPSQMGNIVE  153 (292)
T ss_dssp             GHHHHHT-TCSEEEECGG--GTT---C--------H----HHHHHHHHTTCEEE--EEC-------CTTSCGGGHHHHHH
T ss_pred             HHHHHHh-cCCEEEECcc--ccc---C--------H----HHHHHHHcCCCcEE--EeC-------CCCCCHHHHHHHHH
Confidence            5666666 7888887642  110   0        1    23444446788876  332       22 36788888888


Q ss_pred             HHHHCCcCEEEEcCCcCCCc-HH---HHHHHHHHHHHhCCCccEEE---Ee-----------CCCcCcHHHHHHHHHHcC
Q 012949          311 ELHDMGCFEISLGDTIGVGT-PG---TVVPMLEAVMAVVPVEKLAV---HL-----------HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~-P~---~v~~li~~l~~~~p~~~l~v---H~-----------Hnd~GlA~ANaLaAl~aG  372 (452)
                      .+...|.+.+.|+--.+... +.   .+.. +..+++.++..+|.+   |.           -....+...-+.+|+.+|
T Consensus       154 ~i~~~Gn~~i~L~~rg~~~~y~~~~~dl~~-i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~G  232 (292)
T 1o60_A          154 KIEECGNDKIILCDRGTNFGYDNLIVDMLG-FSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVG  232 (292)
T ss_dssp             HHHHTTCCCEEEEECCEECSTTCEECCTTH-HHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHC
T ss_pred             HHHHcCCCeEEEEECCCCCCCCccccCHHH-HHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcC
Confidence            88899987666665333211 11   3333 346788875568988   55           233444567778999999


Q ss_pred             CC--EEeecc
Q 012949          373 IS--TVDCSV  380 (452)
Q Consensus       373 a~--~VD~Sv  380 (452)
                      |+  +|+.=+
T Consensus       233 a~Gl~IE~H~  242 (292)
T 1o60_A          233 IAGLFLEAHP  242 (292)
T ss_dssp             CSEEEEEEES
T ss_pred             CCEEEEEecC
Confidence            99  887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d1sr9a2	310	c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu	3e-38
d1rqba2	303	c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-	1e-37
d1nvma2	289	c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas	1e-23

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  138 bits (349), Expect = 3e-38
 Identities = 43/333 (12%), Positives = 85/333 (25%), Gaps = 30/333 (9%)

Query: 113 RDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATS-FV 171
           R   ++ +   P +     V  RDG Q   + +    K  +   LV  G   +E      
Sbjct: 1   RTWPDRVIDRAPLWC---AVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSA 57

Query: 172 SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ 231
           S      + +  +      D+    L    P L                 I         
Sbjct: 58  SQTDFDFVREIIEQGAIPDDVTIQVLTQCRPEL-----------------IERTFQACSG 100

Query: 232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV 291
              A +        +        +++ +     D   +    A                 
Sbjct: 101 APRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESY 160

Query: 292 VGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA 351
            G  +E A                     +L  T+ + TP      +E +   +   +  
Sbjct: 161 TGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESV 220

Query: 352 ---VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGL 408
              +H H+  G ++    +    G   ++  + G G        +GNV    +   L   
Sbjct: 221 ILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNG------ERTGNVCLVTLGLNLFSR 274

Query: 409 GVETNVDLRKLMLAGDFINKHLGRPSGSKTAIA 441
           GV+  +D   +      +      P   +    
Sbjct: 275 GVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYG 307

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

 Score =  136 bits (344), Expect = 1e-37
 Identities = 51/315 (16%), Positives = 101/315 (32%), Gaps = 51/315 (16%)

Query: 124 PRFVKIVEVGPRDGLQNEKNT-VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA 182
           PR V I E+  RD  Q+   T +     V     + ++G   VE     +     +  + 
Sbjct: 8   PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67

Query: 183 RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAK 242
                     +      L                                    +    +
Sbjct: 68  DPWERLRTFRKLMPNSRL-----------------------------------QMLLRGQ 92

Query: 243 EVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-- 300
            +  +   ++      ++ S E+ +  +R         ++          G   +G I  
Sbjct: 93  NLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICY 152

Query: 301 ------PPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVM-AVVPVEKLAVH 353
                        +A +L DMG   I+L D   +  P     +++A+        ++ +H
Sbjct: 153 TISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLH 212

Query: 354 LHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETN 413
            H T G +  +++ +++ G+  VD +++ +   P      G+  TE V  ML G G  TN
Sbjct: 213 CHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTN 266

Query: 414 VDLRKLMLAGDFINK 428
           +D  +L    D    
Sbjct: 267 LDYDRLHKIRDHFKA 281

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

 Score = 98.2 bits (243), Expect = 1e-23
 Identities = 56/311 (18%), Positives = 99/311 (31%), Gaps = 48/311 (15%)

Query: 127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQLADARD 184
           + I +V  RDG    ++         + R L  + +  +E       +            
Sbjct: 8   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67

Query: 185 VMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEV 244
            +E +  + G                         + +       +   + A  AGA+ V
Sbjct: 68  DLEYIEAVAGE------------------ISHAQIATLLLPGIGSVHDLKNAYQAGARVV 109

Query: 245 AIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK 304
            +    +EA                       A+ L +   G+        +   IP  K
Sbjct: 110 RVATHCTEADVSKQHI--------------EYARNLGMDTVGF------LMMSHMIPAEK 149

Query: 305 VAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKL-AVHLHDTYGQSLP 363
           +A   K +   G   I + D+ G  +   +   + A  AV+  E    +H H      + 
Sbjct: 150 LAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVA 209

Query: 364 NILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLM-LA 422
           N +++++ G   VD S+AG+G         GN   E  + +   LG     DL  LM  A
Sbjct: 210 NSIVAVEEGCDRVDASLAGMGAGA------GNAPLEVFIAVAERLGWNHGTDLYTLMDAA 263

Query: 423 GDFINKHLGRP 433
            D +     RP
Sbjct: 264 DDIVRPLQDRP 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	100.0
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	100.0
d1sr9a2	310	2-isopropylmalate synthase LeuA, catalytic domain	100.0
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	98.1
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	97.24
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	97.23
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	97.11
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	97.06
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	96.97
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	96.84
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.54
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	96.34
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	96.31
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	96.3
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	96.3
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.26
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	96.25
d1qtwa_	285	Endonuclease IV {Escherichia coli [TaxId: 562]}	96.21
d1xp3a1	297	Endonuclease IV {Bacillus anthracis [TaxId: 1392]}	95.81
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	95.8
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	95.71
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	95.68
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	95.44
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	95.16
d1dosa_	358	Fructose-bisphosphate aldolase (FBP aldolase) {Esc	95.04
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	94.86
d1k77a_	260	Hypothetical protein YgbM (EC1530) {Escherichia co	94.82
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	94.81
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	94.73
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	94.17
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	93.99
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	93.99
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	93.99
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	93.74
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	93.39
d1tv8a_	327	Molybdenum cofactor biosynthesis protein A MoaA {S	93.3
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	93.16
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	92.92
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	92.87
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	92.85
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	92.63
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	92.54
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	92.52
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	92.13
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	91.45
d1bxba_	387	D-xylose isomerase {Thermus aquaticus, subsp. Ther	91.44
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	91.35
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	91.22
d1olta_	441	Oxygen-independent coproporphyrinogen III oxidase	91.2
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	91.05
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	90.89
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	90.59
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	90.26
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	90.04
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	90.01
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	89.86
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	89.78
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	89.39
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	89.17
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	89.07
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	88.48
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	88.48
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	88.06
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	87.87
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	87.59
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	87.55
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	87.54
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	87.48
d1xima_	392	D-xylose isomerase {Actinoplanes missouriensis [Ta	87.38
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	86.9
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	86.55
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	86.2
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	86.18
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	86.17
d1ceoa_	340	Endoglucanase CelC {Clostridium thermocellum [TaxI	85.65
d2amxa1	357	Adenosine deaminase (ADA) {Plasmodium yoelii [TaxI	85.5
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	85.39
d1f61a_	418	Isocitrate lyase {Mycobacterium tuberculosis [TaxI	85.02
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	84.97
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	84.85
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	84.62
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	84.46
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	84.44
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	83.88
d2pb1a1	394	Exo-beta-(1,3)-glucanase {Yeast (Candida albicans)	83.5
d1u83a_	249	(2r)-phospho-3-sulfolactate synthase ComA {Bacillu	83.41
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	83.37
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	83.26
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	83.07
d1j93a_	343	Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic	82.66
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	82.49
d1foba_	334	Beta-1,4-galactanase {Fungus (Aspergillus aculeatu	82.48
d2j78a1	443	Beta-glucosidase A {Thermotoga maritima [TaxId: 23	82.4
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	82.26
d1vffa1	423	Beta-glucosidase A {Archaeon Pyrococcus horikoshii	81.87
d1wcga1	462	Thioglucosidase {Cabbage aphid (Brevicoryne brassi	81.85
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	81.7
d1ur4a_	387	Beta-1,4-galactanase {Bacillus licheniformis [TaxI	81.04
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	80.98
d1vjza_	325	Endoglucanase homologue TM1752 {Thermotoga maritim	80.86
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	80.78
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	80.75
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	80.74
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	80.73
d1wkya2	297	Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449	80.18

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=100.00  E-value=2e-54  Score=426.74  Aligned_cols=293  Identities=18%  Similarity=0.228  Sum_probs=250.2

Q ss_pred             cCCCCccEEEeCCccccCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccC--CHHHHHHHHH-hccCCc
Q 012949          121 KGIPRFVKIVEVGPRDGLQNE-KNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLA--DARDVMEAVR-DLEGAR  196 (452)
Q Consensus       121 ~~~p~~V~I~D~TLRDG~Q~~-~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~--D~e~v~~~i~-~~~~~~  196 (452)
                      ..+|++|+|+|||||||+|+. +..|++++|++|++.|+++||+.||+|+|++++..|++.  +..+....+. ...+.+
T Consensus         5 ~~~p~~i~I~D~tlRDG~Qs~~~~~~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (303)
T d1rqba2           5 VSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMPNSR   84 (303)
T ss_dssp             CCCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCTTSC
T ss_pred             CCCCCeeEEEECCCcccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhhhHH
Confidence            678999999999999999985 456999999999999999999999999999888778774  4444444443 456677


Q ss_pred             eeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH
Q 012949          197 LPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA  276 (452)
Q Consensus       197 l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~  276 (452)
                      +.++.+..+     ...+...+...+.       ..+......+.+.+++....++              ++.+..++++
T Consensus        85 ~~~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~~~~~~~~r~~~~~~~--------------~~~~~~~~~~  138 (303)
T d1rqba2          85 LQMLLRGQN-----LLGYRHYNDEVVD-------RFVDKSAENGMDVFRVFDAMND--------------PRNMAHAMAA  138 (303)
T ss_dssp             EEEEECGGG-----TTSSSCCCHHHHH-------HHHHHHHHTTCCEEEECCTTCC--------------THHHHHHHHH
T ss_pred             HHHHhcccc-----cccccccchhhhH-------HHHHHHHHhhhhHHhhhhhHHH--------------HHHHHHHHHH
Confidence            777776544     3334444433332       2566777889999999877655              3666788899


Q ss_pred             HHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-CCccEEEEeC
Q 012949          277 AKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLH  355 (452)
Q Consensus       277 Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-p~~~l~vH~H  355 (452)
                      ++..|..+.+++++.    +..+++++++.++++.+.++|+++|+|+||+|.++|.++.++++.+++++ |+++|++|+|
T Consensus       139 ~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~i~i~~H~H  214 (303)
T d1rqba2         139 VKKAGKHAQGTICYT----ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCH  214 (303)
T ss_dssp             HHHTTCEEEEEEECC----CSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEB
T ss_pred             HHHcCCeEEEEEEec----CCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcCCcccceeccC
Confidence            999999988877754    45567899999999999999999999999999999999999999999998 6789999999


Q ss_pred             CCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCCCC
Q 012949          356 DTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRPSG  435 (452)
Q Consensus       356 nd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~~p  435 (452)
                      ||+|||+||+++|+++||++||+|++||||      |+||++||+|+.+|+.+|+++++|+++|.+++++++++...-.|
T Consensus       215 nd~Gla~AN~laA~~aG~~~id~ti~GlG~------~~GN~~te~lv~~L~~~g~~t~idl~~L~~i~~~~~~ir~~y~~  288 (303)
T d1rqba2         215 STTGVTEVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKK  288 (303)
T ss_dssp             CTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGG
T ss_pred             chHHHHHHHHHHHHHcCCCEEEECCccCCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999      88999999999999999999999999999999999998766555


Q ss_pred             -CCcccccchhhhhc
Q 012949          436 -SKTAIALNRIAADA  449 (452)
Q Consensus       436 -~~~pi~G~~vf~h~  449 (452)
                       .++|++|.++|+|+
T Consensus       289 ~~~~~~v~~~~~~h~  303 (303)
T d1rqba2         289 FESKTLVDTSIFKSQ  303 (303)
T ss_dssp             GCCSCSCCCTHHHHC
T ss_pred             cccCCCCChHHhccC
Confidence             47899999999997

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=100.00  E-value=1e-52  Score=411.74  Aligned_cols=272  Identities=22%  Similarity=0.258  Sum_probs=231.8

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCC--ccccc---CCHHHHHHHHH-hccCCce
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPK--WVPQL---ADARDVMEAVR-DLEGARL  197 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~--~~p~~---~D~e~v~~~i~-~~~~~~l  197 (452)
                      .++|+|+|||||||+|++++.|++++|++|++.|+++||++||+|+++.++  ..+..   ....+..+.+. .+.+.++
T Consensus         5 ~kkI~I~D~TlRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i   84 (289)
T d1nvma2           5 SKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQI   84 (289)
T ss_dssp             CCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEE
T ss_pred             CCCeEEEECCcccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHH
Confidence            467999999999999999999999999999999999999999999886542  11111   12234444444 3456667


Q ss_pred             eEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          198 PVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       198 ~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      .++....+                      ...+++..+.+++++.+++++..++.              +.+.+.++++
T Consensus        85 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~r~~~~~~~~--------------~~~~~~~~~a  128 (289)
T d1nvma2          85 ATLLLPGI----------------------GSVHDLKNAYQAGARVVRVATHCTEA--------------DVSKQHIEYA  128 (289)
T ss_dssp             EEEECBTT----------------------BCHHHHHHHHHHTCCEEEEEEETTCG--------------GGGHHHHHHH
T ss_pred             HHHHhhhh----------------------hhHHHHHHHHHhcccceEEEeehhhh--------------hhHhHHHHHH
Confidence            66653322                      12347888999999999999998875              3345677899


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC-CCccEEEEeCC
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV-PVEKLAVHLHD  356 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~-p~~~l~vH~Hn  356 (452)
                      |++|+++..+++      +.++.+++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|++|+||
T Consensus       129 ~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn  202 (289)
T d1nvma2         129 RNLGMDTVGFLM------MSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHH  202 (289)
T ss_dssp             HHHTCEEEEEEE------STTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBC
T ss_pred             HHhCCceeeEee------eccccCchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhcccccceeeech
Confidence            999999875544      56789999999999999999999999999999999999999999999998 67789999999


Q ss_pred             CcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHH-HHHhCCCCC
Q 012949          357 TYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFI-NKHLGRPSG  435 (452)
Q Consensus       357 d~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v-~~~~g~~~p  435 (452)
                      |+|||+||+++|+++||++||+|++|||+      |+||++||+|+.+|+.+|+++++|+++|.++++.+ ++..+.|+|
T Consensus       203 ~~g~a~an~l~A~~~G~~~id~si~GlG~------~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~p~~  276 (289)
T d1nvma2         203 NLSLGVANSIVAVEEGCDRVDASLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVR  276 (289)
T ss_dssp             TTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSCCS
T ss_pred             HHHHHHHHHHHHHHhCCcEeeccccccCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999999999999999999      99999999999999999999999999999987554 677799999


Q ss_pred             CCcccccc
Q 012949          436 SKTAIALN  443 (452)
Q Consensus       436 ~~~pi~G~  443 (452)
                      +++|++|.
T Consensus       277 ~~~~~vg~  284 (289)
T d1nvma2         277 VDRETLGL  284 (289)
T ss_dssp             CCHHHHHH
T ss_pred             CCCCeecC
Confidence            99999994

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=9.8e-49  Score=384.40  Aligned_cols=283  Identities=17%  Similarity=0.128  Sum_probs=222.4

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhc---cCCceeE
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDL---EGARLPV  199 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~---~~~~l~~  199 (452)
                      .+...|+|||||||+|+.+..|++++|++|++.|+++||++||+|||. +|+      +.+.+.......   ......+
T Consensus         9 ~~~~~~~D~tLRDG~Q~~~~~~~~~~k~~i~~~L~~aGv~~IEvG~p~~s~~------~~~~~~~~~~~~~~~~~~~~~~   82 (310)
T d1sr9a2           9 DRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQT------DFDFVREIIEQGAIPDDVTIQV   82 (310)
T ss_dssp             CSCCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTCHH------HHHHHHHHHHTTCSCTTCEEEE
T ss_pred             cCCCeeeECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCHH------HHHHHHHHHHhccccccceeee
Confidence            344578899999999999999999999999999999999999999964 432      333344443322   2233344


Q ss_pred             EecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHH---
Q 012949          200 LTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHA---  276 (452)
Q Consensus       200 l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~---  276 (452)
                      +.+.....+                     ....+.........+.++.+.+..+.+.+.+.+..+...........   
T Consensus        83 ~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (310)
T d1sr9a2          83 LTQCRPELI---------------------ERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVE  141 (310)
T ss_dssp             EEESCHHHH---------------------HHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             eeeechhhh---------------------HHHHHhhcCcceeeEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHH
Confidence            444333100                     01222333344456777888889999999999988877766554433   


Q ss_pred             -HHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHH------CCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCC-
Q 012949          277 -AKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHD------MGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPV-  347 (452)
Q Consensus       277 -Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~------~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~-  347 (452)
                       +++. +..+...    +++++.++.+.+.+.+.++.+.+      .|++.|+|+||+|.++|.++.++++.+++.+|. 
T Consensus       142 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~  217 (310)
T d1sr9a2         142 QAAKYPGTQWRFE----YSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANR  217 (310)
T ss_dssp             HHHHSCSSEEEEE----EEEETGGGSCHHHHHHHHHHHHHHHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSG
T ss_pred             HHHHhhcceeEEE----EecccCCCCcHHHHHHHHHHHHHHhhhhhcCceEEeecccccccchhHHHHHHHHHHHhccCc
Confidence             3332 3333222    33445667788887776665544      478999999999999999999999999999975 


Q ss_pred             --ccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHH
Q 012949          348 --EKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDF  425 (452)
Q Consensus       348 --~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~  425 (452)
                        ++|++|+|||+|||+||+++|+++||++||+|+.|||+      |+||++||+++.+|+.+|+++++|+++|.+++++
T Consensus       218 ~~i~i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG~------~aGN~~tE~lv~~l~~~g~~~~idl~~L~~~~~~  291 (310)
T d1sr9a2         218 ESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRT  291 (310)
T ss_dssp             GGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHH
T ss_pred             cceeeeeccccchhhhhHHHHHHHhccCCEEecCCccccc------ccCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence              57999999999999999999999999999999999999      9999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCcccccc
Q 012949          426 INKHLGRPSGSKTAIALN  443 (452)
Q Consensus       426 v~~~~g~~~p~~~pi~G~  443 (452)
                      +++++|+|+|+++|+||+
T Consensus       292 v~~~~~~~~~~~~p~vG~  309 (310)
T d1sr9a2         292 VEYCNQLPVHERHPYGGD  309 (310)
T ss_dssp             HHHHHSCCCCTTCTTTST
T ss_pred             HHHHhCCCCCCCCCCccC
Confidence            999999999999999996

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=0.00039  Score=65.68  Aligned_cols=224  Identities=11%  Similarity=0.066  Sum_probs=141.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .++.++.++.++.+.+.|+..+-+.....+.. +  ...+.+.+.++.+....+.+.+....                  
T Consensus        72 ~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~-~--~~~~~~~~~i~~~~~~~~~~~~~~~~------------------  130 (312)
T d1r30a_          72 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH-E--RDMPYLEQMVQGVKAMGLEACMTLGT------------------  130 (312)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC-T--TTHHHHHHHHHHHHHTTSEEEEECSS------------------
T ss_pred             ccchHHHHHHHHHHHHcCCEEEEEccCCCCCc-h--hhHHHHHHHHHhcccccceeeecccc------------------
Confidence            57899999999999999999888765432210 0  13455666666543322222221110                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCC-hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASAS-EAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~S-d~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                          ...+.++..+++|++.+.+..-.+ +.+.+..-+.+.++.+    ++++.|+++|+++.++++  +|.+ +   +.
T Consensus       131 ----l~~e~l~~lk~aG~~~i~~~iEs~~~~~~~~~~~~~~~~~~----~~~~~a~~~Gi~~~~~~i--~G~~-e---t~  196 (312)
T d1r30a_         131 ----LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERL----DTLEKVRDAGIKVCSGGI--VGLG-E---TV  196 (312)
T ss_dssp             ----CCHHHHHHHHHHCCCEEECCCBSCHHHHHHHCCSSCHHHHH----HHHHHHHHHHCEEECCEE--ECSS-C---CH
T ss_pred             ----chHHHHHHhhcccceeEecccchhhhhhccCCCCCCHHHHH----HHHHHHHHhccceecceE--ecCc-C---cH
Confidence                123578889999999988776444 4444444566666544    567889999999987776  5543 2   35


Q ss_pred             HHHHHHHHHHHHCCcC--EEE------EcCC----cCCCcHHHHHHHHHHHHHhCCCccEEEEe-CCCcCcHHHHHHHHH
Q 012949          303 SKVAYVAKELHDMGCF--EIS------LGDT----IGVGTPGTVVPMLEAVMAVVPVEKLAVHL-HDTYGQSLPNILISL  369 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad--~I~------L~DT----~G~~~P~~v~~li~~l~~~~p~~~l~vH~-Hnd~GlA~ANaLaAl  369 (452)
                      ++..+....+.+++.+  .|.      ...|    ....+|.++..+++..|=.+|+..+.+=+ -...|.  --...|+
T Consensus       197 ~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~--~~~~~~L  274 (312)
T d1r30a_         197 KDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCF  274 (312)
T ss_dssp             HHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCH--HHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCH--HHHHHHH
Confidence            6677777777766543  332      2334    23457788888898888888874443332 234444  3334689


Q ss_pred             HcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          370 QMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       370 ~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      .+||+.+   +.  |+ .|  =.+++...++.+.+++.+|+.+
T Consensus       275 ~~Gan~~---~~--~~-~~--~t~~~~~~~~~~~~i~~~G~~P  309 (312)
T d1r30a_         275 MAGANSI---FY--GC-KL--LTTPNPEEDKDLQLFRKLGLNP  309 (312)
T ss_dssp             HHTCCEE---EC--SS-BS--SSSBCCCHHHHHHHHHHTTCCS
T ss_pred             hcCCcEE---Ee--cC-cc--ccCCCCCHHHHHHHHHHcCCCc
Confidence            9999833   22  22 00  0355678899999999998865

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.24  E-value=0.0039  Score=57.45  Aligned_cols=194  Identities=15%  Similarity=0.167  Sum_probs=123.6

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchh
Q 012949          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLK  205 (452)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~  205 (452)
                      .++|-|+=      +...+.++..++++.-.+.|+..+.+-    |.|++      ...+.++. .++++.+.+  |.- 
T Consensus        22 ~~ID~TlL------~~~~T~~~i~~lc~~A~~~~~~avcV~----p~~v~------~a~~~l~~-s~v~v~tVigFP~G-   83 (234)
T d1n7ka_          22 SRIDSTLL------SPRATEEDVRNLVREASDYGFRCAVLT----PVYTV------KISGLAEK-LGVKLCSVIGFPLG-   83 (234)
T ss_dssp             TTEEEECC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----HHHHH------HHHHHHHH-HTCCEEEEESTTTC-
T ss_pred             HHhhhcCC------CCCCCHHHHHHHHHHHHHhCCeEEEEC----cHhHH------HHHHHhhc-CCCceEEEEecCCC-
Confidence            45777762      335789999999999999999988873    22222      12233332 356665544  221 


Q ss_pred             hhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          206 VILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       206 ~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                                ..+.+       .....++.|++.|+++|.+.+..+-         -.+...+.+.+.++.+++.|..+-
T Consensus        84 ----------~~~~~-------~k~~E~~~Ai~~GAdEID~Vin~~~---------~~~~~~~ev~~~~~~~~~~g~~lK  137 (234)
T d1n7ka_          84 ----------QAPLE-------VKLVEAQTVLEAGATELDVVPHLSL---------GPEAVYREVSGIVKLAKSYGAVVK  137 (234)
T ss_dssp             ----------CSCHH-------HHHHHHHHHHHHTCCEEEECCCGGG---------CHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ----------CCcHH-------HHHHHHHHHHHcCCCeEEEEechhh---------hhhhhHHHHHHHHHHHhccCceEE
Confidence                      11111       1235788999999999999875432         234556677788888888887665


Q ss_pred             EEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          286 GYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       286 ~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      +-|.       ....+.+.+..+++.+.++|+|-|-  =++|.    .+|..+..+.+..+..    .+++..------ 
T Consensus       138 VIlE-------t~~L~~~~i~~a~~~a~~aGadFVK--TSTG~~~~gat~~~~~~l~~~~~~~----~vgIKasGGIrt-  203 (234)
T d1n7ka_         138 VILE-------APLWDDKTLSLLVDSSRRAGADIVK--TSTGVYTKGGDPVTVFRLASLAKPL----GMGVKASGGIRS-  203 (234)
T ss_dssp             EECC-------GGGSCHHHHHHHHHHHHHTTCSEEE--SCCSSSCCCCSHHHHHHHHHHHGGG----TCEEEEESSCCS-
T ss_pred             EEEe-------ccccchHHHHHHHHHHHHhhhhhee--ecccccCCCCCHHHHHHHHHHhcCC----CCcEEeeCCcCC-
Confidence            3222       2356788999999999999999665  45563    5777777666655421    244444221111 


Q ss_pred             HHHHHHHHHcCCCEEeec
Q 012949          362 LPNILISLQMGISTVDCS  379 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~S  379 (452)
                      ...++.-+++||++|-+|
T Consensus       204 ~~~a~~~i~aGa~rIGtS  221 (234)
T d1n7ka_         204 GIDAVLAVGAGADIIGTS  221 (234)
T ss_dssp             HHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHccCceeecc
Confidence            246677789999987554

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.23  E-value=0.015  Score=53.09  Aligned_cols=222  Identities=13%  Similarity=0.041  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+|.++.++.   ..++|++.||+.........+...+.+++.+.+++ .++++.++.+...        |........+
T Consensus        17 ~l~lee~l~~---a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~-~gl~i~~l~~~~~--------~~~~~~~~~~   84 (271)
T d2q02a1          17 GLSIEAFFRL---VKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYP--------FNQLTEEVVK   84 (271)
T ss_dssp             TSCHHHHHHH---HHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETT--------TTSCCHHHHH
T ss_pred             CCCHHHHHHH---HHHhCCCEEEEecCcccccccccCCHHHHHHHHHH-cCCcEEEeecccc--------cCCCCHHHHH
Confidence            3577766554   46789999999532111112222345666666654 4666665543211        1111111111


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                      .    .++-++.|.+.|++.|++.....      ....+.++..+.+.++.++|++.|+.+.  +.. .+.+...-.+.+
T Consensus        85 ~----~~~~i~~a~~lG~~~v~~~~~~~------~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~-~~~~~~~~~~~~  151 (271)
T d2q02a1          85 K----TEGLLRDAQGVGARALVLCPLND------GTIVPPEVTVEAIKRLSDLFARYDIQGL--VEP-LGFRVSSLRSAV  151 (271)
T ss_dssp             H----HHHHHHHHHHHTCSEEEECCCCS------SBCCCHHHHHHHHHHHHHHHHTTTCEEE--ECC-CCSTTCSCCCHH
T ss_pred             H----HHHHHHHHHHcCCcEEEEecCCC------CccchHHHHHHHHHHHHHHhccCCeEEE--Eee-cCCcCcccCCHH
Confidence            1    13467888899999999864422      2334567888889999999999998764  332 111112223566


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCC-cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVG-TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAG  382 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~-~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~G  382 (452)
                      .+.++++... ..+ .+.+ |+.-.. .+....+   .+.+..++--..+|.+|..+.....         +..|.. ..
T Consensus       152 ~~~~li~~~~-~~~-g~~~-D~~H~~~~g~~~~~---~~~~l~~~~i~~vH~~d~~~~~~~~---------~~~~~~-r~  215 (271)
T d2q02a1         152 WAQQLIREAG-SPF-KVLL-DTFHHHLYEEAEKE---FASRIDISAIGLVHLSGVEDTRPTE---------ALADEQ-RI  215 (271)
T ss_dssp             HHHHHHHHHT-CCC-EEEE-EHHHHHHCTTHHHH---HHHHCCGGGEEEEEECBCCCCSCGG---------GCCGGG-CB
T ss_pred             HHHHHHHHhC-Ccc-ceec-cchhHHHcCCChHH---HHHHhCcCcEEEEEEEeCCCCCccc---------cccccc-ee
Confidence            7777776653 333 5555 864211 1222222   2333233334578988854432110         011100 01


Q ss_pred             CCCCCCCCCCCCcccHHHHHHHHHcCCCCC
Q 012949          383 LGGCPYAKGASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       383 lGecP~a~graGNaalE~vv~~L~~~Gi~t  412 (452)
                      +.      ++.|+.+...++..|+..|++-
T Consensus       216 ~~------~G~G~id~~~i~~~L~~~GY~G  239 (271)
T d2q02a1         216 ML------SEKDVMQNYQQVQRLENMGYRG  239 (271)
T ss_dssp             CC------CTTCSSCHHHHHHHHHHTTCCS
T ss_pred             cc------CCCcccCHHHHHHHHHHcCCCc
Confidence            11      1468999999999999877763

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.11  E-value=0.0081  Score=54.93  Aligned_cols=194  Identities=13%  Similarity=0.097  Sum_probs=116.4

Q ss_pred             EEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhh
Q 012949          129 IVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVIL  208 (452)
Q Consensus       129 I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i  208 (452)
                      ++|-|+      .+...+.++..++++...+.||..+.+-    |.|+|.      ..+   .+.++++.+.+ +-.   
T Consensus         7 ~ID~Tl------L~~~~t~~~i~~lc~~A~~~~~~aVcV~----P~~v~~------a~~---~l~~vkv~tVi-gFP---   63 (225)
T d1mzha_           7 YIDNAA------LKPHLSEKEIEEFVLKSEELGIYAVCVN----PYHVKL------ASS---IAKKVKVCCVI-GFP---   63 (225)
T ss_dssp             GEEEEE------CCTTCCHHHHHHHHHHHHHTTCSEEEEC----GGGHHH------HHH---HCSSSEEEEEE-STT---
T ss_pred             hhhhcc------CCCCCCHHHHHHHHHHHHHhCCcEEEEC----HHHHHH------HHh---hccCCceEEEe-ccC---
Confidence            456655      2345799999999999999999999883    334431      112   23456666544 111   


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                         .|.  .+.+       .....++.|++.|+++|.+....+...     ....+...+.+..+++.+.  |..+-  +
T Consensus        64 ---~G~--~~~~-------~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~--~~~lK--V  122 (225)
T d1mzha_          64 ---LGL--NKTS-------VKVKEAVEAVRDGAQELDIVWNLSAFK-----SEKYDFVVEELKEIFRETP--SAVHK--V  122 (225)
T ss_dssp             ---TCC--SCHH-------HHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHTCT--TSEEE--E
T ss_pred             ---CCC--CcHH-------HHHHHHHHHHHcCCCeEEEeechhhhh-----cccHHHHHHHHHHHHHhcc--Cceee--h
Confidence               111  1111       123478899999999999998654431     1234555555555544443  33222  2


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC----CcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGV----GTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      ...     .+..+.+.+.+.++.+.++|+|-|--  ++|.    .+|+.++.+-+.+    ++ .+++..------ +..
T Consensus       123 IlE-----t~~L~~~ei~~a~~~a~~aGadfiKT--STG~~~~gat~e~v~~m~~~~----~~-~~~iKasGGIrt-~~~  189 (225)
T d1mzha_         123 IVE-----TPYLNEEEIKKAVEICIEAGADFIKT--STGFAPRGTTLEEVRLIKSSA----KG-RIKVKASGGIRD-LET  189 (225)
T ss_dssp             ECC-----GGGCCHHHHHHHHHHHHHHTCSEEEC--CCSCSSSCCCHHHHHHHHHHH----TT-SSEEEEESSCCS-HHH
T ss_pred             hhh-----hccCCHHHHHHHHHHHHHcccceEee--cCCCCCCCCCHHHHHHHHHHh----CC-CceEECcCCCCC-HHH
Confidence            211     23457788999999999999997654  4443    5777766654444    33 344444322111 467


Q ss_pred             HHHHHHcCCCEEeec
Q 012949          365 ILISLQMGISTVDCS  379 (452)
Q Consensus       365 aLaAl~aGa~~VD~S  379 (452)
                      ++.-+++|+++|-+|
T Consensus       190 a~~~i~~Ga~RiGtS  204 (225)
T d1mzha_         190 AISMIEAGADRIGTS  204 (225)
T ss_dssp             HHHHHHTTCSEEEES
T ss_pred             HHHHHHhchhheecC
Confidence            778889999987443

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.0086  Score=54.22  Aligned_cols=189  Identities=18%  Similarity=0.130  Sum_probs=117.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe--cchhhhhhhhhhhhhccch
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT--PNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~--~~~~~~i~r~~~~~~~~~~  220 (452)
                      ...+.++..++++...+.|+..+.+-    |.|+|      ...+.++. .++++.+.+  |.-         ....  +
T Consensus        13 ~~~T~~~i~~lc~~A~~~~~~aVcV~----P~~v~------~a~~~l~~-s~v~v~~VigFP~G---------~~~~--~   70 (211)
T d1ub3a_          13 PTATLEEVAKAAEEALEYGFYGLCIP----PSYVA------WVRARYPH-APFRLVTVVGFPLG---------YQEK--E   70 (211)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEECC----GGGHH------HHHHHCTT-CSSEEEEEESTTTC---------CSCH--H
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHccC-CCCceEEEEecccc---------cCcH--H
Confidence            35789999999999999999988873    33332      12233322 345555544  221         1111  1


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                             .....++.|++.|+++|.+.+..+-+     .....+...+.+..+++.+.+.-++|.  |       ..+..
T Consensus        71 -------~k~~e~~~ai~~GA~EiD~V~n~~~~-----~~g~~~~v~~ei~~v~~~~~~~~lKVI--l-------Et~~L  129 (211)
T d1ub3a_          71 -------VKALEAALACARGADEVDMVLHLGRA-----KAGDLDYLEAEVRAVREAVPQAVLKVI--L-------ETGYF  129 (211)
T ss_dssp             -------HHHHHHHHHHHTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHSTTSEEEEE--C-------CGGGS
T ss_pred             -------HHHHHHHHHHHcCCCeEEEeeccchh-----hcCCHHHHHHHHHHHHHhccCCceEEE--e-------ccccC
Confidence                   12347889999999999999875432     123455666666666666643322332  1       12356


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEee
Q 012949          301 PPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                      +.+.+.+.++.+.++|+|-|--.--.  +..+|++++-|.+.+..     .++++.---- --+..+++-+++|++++-+
T Consensus       130 ~~~ei~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~~~-----~~~iKasGGI-rt~~~a~~~l~aGa~riGt  203 (211)
T d1ub3a_         130 SPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQG-----RAQVKAAGGI-RDRETALRMLKAGASRLGT  203 (211)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHTT-----SSEEEEESSC-CSHHHHHHHHHTTCSEEEE
T ss_pred             CHHHHHHHHHHHHHhccceEEecCCCCCCCCCHHHHHHHHHHhCC-----CceEECcCCC-CCHHHHHHHHHHhhhHhcc
Confidence            78899999999999999977665422  23688888877666543     3444442110 1235567778999999877


Q ss_pred             cc
Q 012949          379 SV  380 (452)
Q Consensus       379 Sv  380 (452)
                      |-
T Consensus       204 Ss  205 (211)
T d1ub3a_         204 SS  205 (211)
T ss_dssp             TT
T ss_pred             Cc
Confidence            63

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.97  E-value=0.015  Score=53.88  Aligned_cols=197  Identities=13%  Similarity=0.057  Sum_probs=122.3

Q ss_pred             EeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhh
Q 012949          130 VEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQ  209 (452)
Q Consensus       130 ~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~  209 (452)
                      +|-||      .+-..+.++..++++.-.+.||..+.+-    |.|+|      ...+.++. .++++.+.+ +..    
T Consensus        39 ID~Tl------L~p~~t~e~i~~lc~~A~~~~~aaVcV~----P~~v~------~a~~~L~g-s~v~v~tVi-gFP----   96 (251)
T d1o0ya_          39 IEHTN------LKPFATPDDIKKLCLEARENRFHGVCVN----PCYVK------LAREELEG-TDVKVVTVV-GFP----   96 (251)
T ss_dssp             EEEEE------CCTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------HHHHHHTT-SCCEEEEEE-STT----
T ss_pred             ccccC------CCCCCCHHHHHHHHHHHhhcCceEEEEC----HHHHH------HHHHHhcC-CCceEEeec-cCC----
Confidence            56665      3446799999999999999999999883    33332      23334432 355655444 111    


Q ss_pred             hhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949          210 RSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  289 (452)
Q Consensus       210 r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~  289 (452)
                        .  +..+.+       .....++.|++.|+++|.+.+..+-+     .....+...+.+..+++.++  |..+-+  .
T Consensus        97 --~--G~~~~~-------~K~~Ea~~Ai~~GAdEID~Vin~~~l-----~~g~~~~v~~ei~~v~~~~~--~~~lKV--I  156 (251)
T d1o0ya_          97 --L--GANETR-------TKAHEAIFAVESGADEIDMVINVGML-----KAKEWEYVYEDIRSVVESVK--GKVVKV--I  156 (251)
T ss_dssp             --T--CCSCHH-------HHHHHHHHHHHHTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEEE--E
T ss_pred             --C--CCCcHH-------HHHHHHHHHHHcCCceEEEEeccchh-----hcCCHHHHHHHHHHHHHHhc--ccceee--e
Confidence              1  111111       12347888999999999999876543     23355666677767766664  444432  2


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHH
Q 012949          290 CVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILI  367 (452)
Q Consensus       290 ~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLa  367 (452)
                      .     .....+.+.+.+.++.+.++|+|-|--.--.  |..+|+.+.-+-+.+    ++ .+++..----- -+..++.
T Consensus       157 l-----Et~~L~~~e~~~a~~ia~~aGadfvKTSTGf~~~gat~e~V~~m~~~~----~~-~~giKasGGIr-t~~~a~~  225 (251)
T d1o0ya_         157 I-----ETCYLDTEEKIAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIV----GD-EMGVKASGGIR-TFEDAVK  225 (251)
T ss_dssp             C-----CGGGCCHHHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHH----CT-TSEEEEESSCC-SHHHHHH
T ss_pred             e-----cccccCcHHHHHHHHHHHHhCcceeeccCCCCCCCcCHHHHHHHHHHh----CC-CceEeccCCcC-CHHHHHH
Confidence            1     1235667788899999999999977665532  456888876654443    33 34554332111 1456677


Q ss_pred             HHHcCCCEEeec
Q 012949          368 SLQMGISTVDCS  379 (452)
Q Consensus       368 Al~aGa~~VD~S  379 (452)
                      -+++|+++|-+|
T Consensus       226 ~i~aGa~riGtS  237 (251)
T d1o0ya_         226 MIMYGADRIGTS  237 (251)
T ss_dssp             HHHTTCSEEEES
T ss_pred             HHHHhhHHhCCC
Confidence            789999988554

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=96.84  E-value=0.0078  Score=57.47  Aligned_cols=195  Identities=20%  Similarity=0.217  Sum_probs=127.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      ..+.++...++++-.+...+.|---++..-++.+     .+....+... ....+++.+. +.          .+     
T Consensus        24 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~-----~~~~~~~~~~a~~~~vpv~lH-lD----------H~-----   82 (305)
T d1rvga_          24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGG-----RALTLMAVELAKEARVPVAVH-LD----------HG-----   82 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHH-----HHHHHHHHHHHHHCSSCEEEE-EE----------EE-----
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCccHHhHcc-----HHHHHHHHHHHhccCCcEEEe-eh----------hc-----
Confidence            4788999999999999999977554332111111     1122222211 1122232221 00          01     


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC-----
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE-----  297 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~-----  297 (452)
                           ...+.+.+|+++|.+-|.+=.|.          .+.++.++..++++++|+..|+.|++.|-..-|.++.     
T Consensus        83 -----~~~e~i~~ai~~GftSVMiDgS~----------l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~  147 (305)
T d1rvga_          83 -----SSYESVLRALRAGFTSVMIDKSH----------EDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDE  147 (305)
T ss_dssp             -----CSHHHHHHHHHTTCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------
T ss_pred             -----cChhhhHHHHhcCCceEEEcCcc----------ccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccc
Confidence                 12357899999999988875443          2468899999999999999999999988886555542     


Q ss_pred             ---CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCCc----HHHHHHHHHHHHHhCCCccEEEEe--------------
Q 012949          298 ---GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVGT----PGTVVPMLEAVMAVVPVEKLAVHL--------------  354 (452)
Q Consensus       298 ---~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~~----P~~v~~li~~l~~~~p~~~l~vH~--------------  354 (452)
                         ..++|+...+++++   .|+|.+.++  -.=|.-.    |.-=.++++.+++..+ +||.+|+              
T Consensus       148 ~~~~~T~peea~~Fv~~---TgvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~-~PLVlHGgS~vp~~~~~~~~~  223 (305)
T d1rvga_         148 KDALLTNPEEARIFMER---TGADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRA  223 (305)
T ss_dssp             CCTTCCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHH---hCccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccC-CCeeccCCccccHHHHhhhcc
Confidence               13688887777654   599965553  3334321    2233567788888776 4898887              


Q ss_pred             -----CCCcCcHHHHHHHHHHcCCCEEee
Q 012949          355 -----HDTYGQSLPNILISLQMGISTVDC  378 (452)
Q Consensus       355 -----Hnd~GlA~ANaLaAl~aGa~~VD~  378 (452)
                           |...|+.-.....|+..|+.-|+.
T Consensus       224 ~g~~lhg~sG~~~e~i~~ai~~GV~KiNi  252 (305)
T d1rvga_         224 SGGEIGEAAGIHPEDIKKAISLGIAKINT  252 (305)
T ss_dssp             TTCCCCSCBCCCHHHHHHHHHTTEEEEEE
T ss_pred             cCcccCCCCCCCHHHHHHHHHcCeEEEEe
Confidence                 667799999999999999876543

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.54  E-value=0.016  Score=53.65  Aligned_cols=182  Identities=16%  Similarity=0.188  Sum_probs=104.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-cccc-----------CCHHHHHHHHHhc---cCCceeEEecchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQL-----------ADARDVMEAVRDL---EGARLPVLTPNLKVIL  208 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~-----------~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i  208 (452)
                      .+.+.-.++++.|++ |++.||+|+|-| |.. .|..           .+.+++++.++++   .++.+..|.       
T Consensus        16 P~~~~s~~~l~~l~~-g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~-------   87 (248)
T d1geqa_          16 PDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMT-------   87 (248)
T ss_dssp             SCHHHHHHHHHHHGG-GBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEE-------
T ss_pred             CCHHHHHHHHHHHHc-CCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEe-------
Confidence            467888899999976 999999998754 320 1111           0224444444432   222222222       


Q ss_pred             hhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          209 QRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       209 ~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                           |-..   +   ++....+.++.+.++|++.+-+.+-.-                +...+..+.++++|+....-+
T Consensus        88 -----Y~N~---i---~~~G~~~f~~~~~~~Gv~GliipDLP~----------------eE~~~~~~~~~~~gl~~I~lv  140 (248)
T d1geqa_          88 -----YYNP---I---YRAGVRNFLAEAKASGVDGILVVDLPV----------------FHAKEFTEIAREEGIKTVFLA  140 (248)
T ss_dssp             -----CHHH---H---HHHCHHHHHHHHHHHTCCEEEETTCCG----------------GGHHHHHHHHHHHTCEEEEEE
T ss_pred             -----cccc---c---cccCHHHHhhhhcccCeeEEeccCCcH----------------HHHHHHHhhccccCcceEEEe
Confidence                 1110   0   111234578899999999998875321                223466788899999764211


Q ss_pred             EeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH-
Q 012949          289 SCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN-  364 (452)
Q Consensus       289 ~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN-  364 (452)
                           .|   .++++.+.++++...  | +..+...-++|.-  .|.++.++++.+|+.. +.|+.+    -+|..... 
T Consensus       141 -----aP---tt~~~ri~~i~~~s~--gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~v----GFGI~~~e~  205 (248)
T d1geqa_         141 -----AP---NTPDERLKVIDDMTT--GFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAV----GFGVSKREH  205 (248)
T ss_dssp             -----CT---TCCHHHHHHHHHHCS--SEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEE----ESCCCSHHH
T ss_pred             -----cc---cchhHHHHHHHhcCC--CeEEEEecccccccchhhhhhHHHHHHHHhhhc-ccceee----ecccCCHHH
Confidence                 12   234556666665432  2 4555556666644  5688999999999985 357766    34554443 


Q ss_pred             HHHHHHcCCCEE
Q 012949          365 ILISLQMGISTV  376 (452)
Q Consensus       365 aLaAl~aGa~~V  376 (452)
                      +..++.+|||.|
T Consensus       206 v~~~~~~~ADGv  217 (248)
T d1geqa_         206 VVSLLKEGANGV  217 (248)
T ss_dssp             HHHHHHTTCSEE
T ss_pred             HHHHHhcCCCEE
Confidence            445678898854

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=96.34  E-value=0.032  Score=50.46  Aligned_cols=150  Identities=19%  Similarity=0.160  Sum_probs=102.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      -+.++-+++++.|.+.||+.||+++.. |       ++.+.++.+++ .+++.+.+-+=                     
T Consensus        26 ~~~~~a~~~~~al~~~Gi~~iEitl~~-p-------~a~~~i~~l~~~~p~~~vGaGTV---------------------   76 (216)
T d1mxsa_          26 AREEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTV---------------------   76 (216)
T ss_dssp             SCGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECC---------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHhCCCcceeeeee---------------------
Confidence            356888999999999999999999742 2       23455666653 45655544220                     


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.++++|++.+.-  +..+                  .+++++|++.|+.+..           +-.+|.
T Consensus        77 ----~~~~~~~~a~~aGa~Fivs--P~~~------------------~~v~~~a~~~~i~~iP-----------Gv~Tps  121 (216)
T d1mxsa_          77 ----LDRSMFAAVEAAGAQFVVT--PGIT------------------EDILEAGVDSEIPLLP-----------GISTPS  121 (216)
T ss_dssp             ----CSHHHHHHHHHHTCSSEEC--SSCC------------------HHHHHHHHHCSSCEEC-----------EECSHH
T ss_pred             ----ecHHHHHHHHhCCCCEEEC--CCCc------------------HHHHHHHHhcCCCccC-----------CcCCHH
Confidence                1235899999999986542  2211                  3677999999998652           223454


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHH---HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTV---VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v---~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      ++.    .+.++|++.+-+       .|...   ...++.++.-+|++++-    -+=|.-..|.-.=+.+|+
T Consensus       122 Ei~----~A~~~G~~~vKl-------FPA~~~~g~~~ikal~~p~p~~~fi----ptGGV~~~n~~~yl~~~~  179 (216)
T d1mxsa_         122 EIM----MGYALGYRRFKL-------FPAEISGGVAAIKAFGGPFGDIRFC----PTGGVNPANVRNYMALPN  179 (216)
T ss_dssp             HHH----HHHTTTCCEEEE-------TTHHHHTHHHHHHHHHTTTTTCEEE----EBSSCCTTTHHHHHHSTT
T ss_pred             HHH----HHHHCCCCEEEe-------ccccccccHHHHHHHhcccccCcee----ccCCCCHHHHHHHHhcCC
Confidence            443    467899999988       77653   46788888888875443    355666778887788774

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=96.31  E-value=0.03  Score=51.83  Aligned_cols=214  Identities=14%  Similarity=0.142  Sum_probs=128.5

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHC--CCCEEEEecCCCCCcccccCCHHHHHHHHHhc--cCCceeEEe-
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS--GLPVVEATSFVSPKWVPQLADARDVMEAVRDL--EGARLPVLT-  201 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~--Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~--~~~~l~~l~-  201 (452)
                      ++++|-|+      .....+.++..++++.-.+.  |+-.+.|    +|.|+|      ...+.++..  +++++...+ 
T Consensus        12 ~~~iD~T~------L~~~~T~~~i~~lc~~A~~~~~~~aaVCV----~P~~v~------~a~~~l~~~~~~~v~v~tVig   75 (250)
T d1p1xa_          12 LKLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLKEQGTPEIRIATVTN   75 (250)
T ss_dssp             HTTEEEEC------CCTTCCHHHHHHHHHHTEETTEECSEEEC----CGGGHH------HHHHHHHHTTCTTSEEEEEES
T ss_pred             hhhccCCC------CCCCCCHHHHHHHHHHHHhhcCCeEEEEE----ChHHHH------HHHHHhhhcCCCcceEEEEec
Confidence            44677766      23346788888888877665  6655555    455544      234555543  345665543 


Q ss_pred             -cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 012949          202 -PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL  280 (452)
Q Consensus       202 -~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~  280 (452)
                       |--           ..+.+       .....++.|++.|+++|.+.+..+-+.     .-..+...+.+..+.+.++..
T Consensus        76 FP~G-----------~~~~e-------~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~~~  132 (250)
T d1p1xa_          76 FPHG-----------NDDID-------IALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFDLVKACKEACAAA  132 (250)
T ss_dssp             TTTC-----------CSCHH-------HHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCCHHHHHHHHHHHHHHHHT
T ss_pred             cCCC-----------CccHh-------HHHHHHHHHHHcCCCeEEEeecchhhc-----cccHHHHHHHHHHHHHhhccC
Confidence             221           11111       123478899999999999998754431     122455566677777888888


Q ss_pred             CCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCc--CCCcHHHHHHHHHHHHHhCCCccEEEEeCC--
Q 012949          281 SIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTI--GVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--  356 (452)
Q Consensus       281 G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--  356 (452)
                      |..+-+-|..      ....+.+.+...++.+.++|+|-|--.--.  +..+|+.+..+.+.+++.....++++..--  
T Consensus       133 ~~~lKVIlEt------~~Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGI  206 (250)
T d1p1xa_         133 NVLLKVIIET------GELKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGV  206 (250)
T ss_dssp             TCEEEEECCH------HHHCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSC
T ss_pred             CceEEEEEec------cccCcHHHHHHHHHHHHHcCcCeEEecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCC
Confidence            8876632321      112344445567788899999976543332  256799999998888765322357776644  


Q ss_pred             -CcCcHHHHHHHHHH-cCCCEEeecccCCCC
Q 012949          357 -TYGQSLPNILISLQ-MGISTVDCSVAGLGG  385 (452)
Q Consensus       357 -d~GlA~ANaLaAl~-aGa~~VD~Sv~GlGe  385 (452)
                       |+..|.+-..++.+ .|.++++....-+|.
T Consensus       207 rt~~~a~~~i~~ga~~iG~~~~~~~~fRiGa  237 (250)
T d1p1xa_         207 RTAEDAQKYLAIADELFGADWADARHYRFGA  237 (250)
T ss_dssp             CSHHHHHHHHHHHHHHHCTTSCSTTTBCEEE
T ss_pred             CCHHHHHHHHHHHHHHhCccccccCceeeeH
Confidence             33333333333333 577777777777766

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.048  Score=48.73  Aligned_cols=154  Identities=21%  Similarity=0.254  Sum_probs=101.2

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh--ccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD--LEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~--~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      -+.++-+++++.|.+.|++.+|+++-. |       ++.+.++.++.  -++..+.+-+=                    
T Consensus        18 ~~~~~a~~~~~al~~~Gi~~iEitlr~-p-------~a~~~i~~l~~~~~~~~~vGaGTV--------------------   69 (202)
T d1wa3a1          18 NSVEEAKEKALAVFEGGVHLIEITFTV-P-------DADTVIKELSFLKEKGAIIGAGTV--------------------   69 (202)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHTHHHHHTTCEEEEESC--------------------
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCC-c-------cHHHHHHHHHHhcCCCcEEEeccc--------------------
Confidence            367899999999999999999998742 3       23445555543  24444433220                    


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                           .+.++++.|+++|++.+-  .+.-+                  .++++++++.|+.+..-           -.++
T Consensus        70 -----~~~~~~~~a~~aGa~fiv--sP~~~------------------~~v~~~~~~~~i~~iPG-----------v~Tp  113 (202)
T d1wa3a1          70 -----TSVEQCRKAVESGAEFIV--SPHLD------------------EEISQFCKEKGVFYMPG-----------VMTP  113 (202)
T ss_dssp             -----CSHHHHHHHHHHTCSEEE--CSSCC------------------HHHHHHHHHHTCEEECE-----------ECSH
T ss_pred             -----ccHHHHHHHHhhcccEEe--CCCCc------------------HHHHHHHHhcCCceeCC-----------cCcH
Confidence                 123589999999999773  22111                  36778999999876522           2345


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHH--HHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVV--PMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~--~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      .++..    +.++|++.+-+       .|..+.  .+++.++.-+|++++--    +=|--..|...-+++|+..|-
T Consensus       114 sEi~~----A~~~G~~~lK~-------fPa~~~G~~~lk~l~~p~p~i~~ip----tGGI~~~n~~~~l~aga~avg  175 (202)
T d1wa3a1         114 TELVK----AMKLGHTILKL-------FPGEVVGPQFVKAMKGPFPNVKFVP----TGGVNLDNVCEWFKAGVLAVG  175 (202)
T ss_dssp             HHHHH----HHHTTCCEEEE-------TTHHHHHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHHHTCSCEE
T ss_pred             HHHHH----HHHCCCCEEEe-------cchhhcCHHHHHHHhCcccCCcEEe----eCCCCHHHHHHHHHCCCeEEE
Confidence            54443    46799999988       444432  57888888788765532    345556788888889987553

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.30  E-value=0.023  Score=53.00  Aligned_cols=185  Identities=14%  Similarity=0.082  Sum_probs=107.9

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-cccc-----------CCHHHHHHHHHh---c-cCCceeEEecchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQL-----------ADARDVMEAVRD---L-EGARLPVLTPNLKV  206 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~-----------~D~e~v~~~i~~---~-~~~~l~~l~~~~~~  206 (452)
                      ..+.+.-.++++.|.+.|+|.||+|+|-| |.. .|-.           ...+++++.++.   . ....+..|+     
T Consensus        27 ~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~-----  101 (267)
T d1qopa_          27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLM-----  101 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEE-----
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEe-----
Confidence            35788999999999999999999998743 320 0111           022334444432   1 122332222     


Q ss_pred             hhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 012949          207 ILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRG  286 (452)
Q Consensus       207 ~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~  286 (452)
                             |-..   +   ++....+.++.+.++|++.+-+.+-.-                +...+..+.++++|+....
T Consensus       102 -------Y~N~---i---~~~G~~~f~~~~~~~Gv~GliipDlP~----------------ee~~~~~~~~~~~~l~~I~  152 (267)
T d1qopa_         102 -------YANL---V---FNNGIDAFYARCEQVGVDSVLVADVPV----------------EESAPFRQAALRHNIAPIF  152 (267)
T ss_dssp             -------CHHH---H---HTTCHHHHHHHHHHHTCCEEEETTCCG----------------GGCHHHHHHHHHTTCEEEC
T ss_pred             -------eccc---h---hhcCchHHHHHHHhcCCCceeccchhh----------------hhhHHHHHhhhccCceEEE
Confidence                   1000   0   011123578899999999998875321                1223556789999997541


Q ss_pred             EEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCc--HHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          287 YVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGT--PGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       287 ~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      -+     .|   .++.+.+.++++..... +..+...-++|.-.  +.++.++++.+|+.. +.||.+=    +|....-
T Consensus       153 lv-----aP---tt~~~Ri~~i~~~a~gF-iY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vG----FGI~~~e  218 (267)
T d1qopa_         153 IC-----PP---NADDDLLRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQG----FGISSPE  218 (267)
T ss_dssp             EE-----CT---TCCHHHHHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEE----SSCCSHH
T ss_pred             Ee-----cc---cccHHHHHHHHhhCchh-hhhhcccccCCcccccchhHHHHHHHHhhhc-cCCceee----cccCCHH
Confidence            11     12   24556777777654321 45666666666544  577899999999865 4466542    3555544


Q ss_pred             H-HHHHHcCCCEE
Q 012949          365 I-LISLQMGISTV  376 (452)
Q Consensus       365 a-LaAl~aGa~~V  376 (452)
                      - ..++.+|||.|
T Consensus       219 ~v~~~~~~~ADGv  231 (267)
T d1qopa_         219 QVSAAVRAGAAGA  231 (267)
T ss_dssp             HHHHHHHTTCSEE
T ss_pred             HHHHHHhcCCCEE
Confidence            4 45688898855

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.26  E-value=0.026  Score=51.95  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=88.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      +++.|++.|++-|-+.+...+-        ..++.++++.++++.|+++|+++.+- .+.+|.......+++.+...++.
T Consensus        95 sve~a~rlGadaV~~~v~~g~~--------~e~~~l~~~~~v~~e~~~~glP~v~e-~~p~g~~~~~~~~~~~v~~aari  165 (251)
T d1ojxa_          95 SVEEAVSLGASAVGYTIYPGSG--------FEWKMFEELARIKRDAVKFDLPLVVW-SYPRGGKVVNETAPEIVAYAARI  165 (251)
T ss_dssp             CHHHHHHTTCSEEEEEECTTST--------THHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHH
T ss_pred             CHHHHHhchhceEEEEEeCCCC--------chHHHHHHHHHHHHHHHHcCCeEEEE-EeecCCccccCCCHHHHHHHHHH
Confidence            7889999999977665533221        23578999999999999999997643 34555555667789999999999


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.++|||.|.+.=+      ....++-..+....+ .++-+   =-..+..-.+.....|+++||..|-
T Consensus       166 a~ElGaDivK~~~p------~~~~~~~~~v~~a~~-~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~  227 (251)
T d1ojxa_         166 ALELGADAMKIKYT------GDPKTFSWAVKVAGK-VPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIA  227 (251)
T ss_dssp             HHHHTCSEEEECCC------SSHHHHHHHHHHTTT-SCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhCCCEEEecCC------CcHHHHHHHHHhcCC-CceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence            99999999887422      222232222222222 23322   2345666677888899999987553

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.039  Score=49.83  Aligned_cols=152  Identities=21%  Similarity=0.136  Sum_probs=101.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHh-ccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRD-LEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~-~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      -+.++-+++++.|.+.|++.||+++- +|       ++.+.++.+++ .++..+.+-+=                     
T Consensus        24 ~~~~~a~~~~~al~~~Gi~~iEitl~-tp-------~a~~~I~~l~~~~p~~~vGaGTV---------------------   74 (213)
T d1wbha1          24 KKLEHAVPMAKALVAGGVRVLNVTLR-TE-------CAVDAIRAIAKEVPEAIVGAGTV---------------------   74 (213)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEESC-ST-------THHHHHHHHHHHCTTSEEEEESC---------------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCeeecccc---------------------
Confidence            36788899999999999999999973 23       34556666654 46655443221                     


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                          .+.++++.|+++|++.+.-.  .-+                  .+++++|++.++.+..-+           .+|.
T Consensus        75 ----~~~~~~~~a~~aGa~FivSP--~~~------------------~~v~~~a~~~~i~~iPGv-----------~Tps  119 (213)
T d1wbha1          75 ----LNPQQLAEVTEAGAQFAISP--GLT------------------EPLLKAATEGTIPLIPGI-----------STVS  119 (213)
T ss_dssp             ----CSHHHHHHHHHHTCSCEEES--SCC------------------HHHHHHHHHSSSCEEEEE-----------SSHH
T ss_pred             ----ccHHHHHHHHHCCCcEEECC--CCC------------------HHHHHHHHhcCCCccCCc-----------CCHH
Confidence                12458999999999976532  212                  367799999999875322           2344


Q ss_pred             HHHHHHHHHHHCCcCEEEEc--CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          304 KVAYVAKELHDMGCFEISLG--DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      ++.    .+.++|++.+-+=  ++.|   |   ..+++.++.-+|++++-    -+=|.-..|.-.=+.+|+.
T Consensus       120 Ei~----~A~~~G~~~vKlFPA~~~G---g---~~~lkal~~p~p~~~~~----ptGGV~~~n~~~yl~~g~v  178 (213)
T d1wbha1         120 ELM----LGMDYGLKEFKFFPAEANG---G---VKALQAIAGPFSQVRFC----PTGGISPANYRDYLALKSV  178 (213)
T ss_dssp             HHH----HHHHTTCCEEEETTTTTTT---H---HHHHHHHHTTCTTCEEE----EBSSCCTTTHHHHHTSTTB
T ss_pred             HHH----HHHHCCCCEEEeccchhcC---h---HHHHHHhcCcccCCcee----eeCCCCHHHHHHHHhCCCE
Confidence            443    3678999988872  3333   1   35678888878875443    3456666788777888863

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

Probab=96.21  E-value=0.26  Score=44.31  Aligned_cols=171  Identities=15%  Similarity=0.166  Sum_probs=91.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|++.|.+..+.-.      ...+.++.++.+.+.++.+......+...+...-..+...-.+++.+.++.+
T Consensus        93 ~~i~~a~~lG~~~vv~h~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~v~i~le~~~~~~~~~~~~~~~~~~i~~  166 (285)
T d1qtwa_          93 DEMQRCEQLGLSLLNFHPGSHL------MQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIID  166 (285)
T ss_dssp             HHHHHHHHTTCCEEEECCCBCT------TTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCceeeeceecc------CcccHHHHHHHHHHHHHHHHHhccCCeEEEeeccccCCcCcCCHHHHHHHHH
Confidence            4677888899998888653211      2345677788777776665544444444454432222222346777777766


Q ss_pred             HHHHCCcCEEEEc-CCcC-------CCcHHHHHHHHHHHHHhC-CCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          311 ELHDMGCFEISLG-DTIG-------VGTPGTVVPMLEAVMAVV-PVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       311 ~l~~~Gad~I~L~-DT~G-------~~~P~~v~~li~~l~~~~-p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+..  -..+.++ ||.=       ...+....+.+....... ++-...+|.||..+--        -.+.++ +.   
T Consensus       167 ~~~~--~~~vgl~lD~~H~~~~G~d~~~~~~~~~~~~~~~~~~~~~~i~~vH~~D~~~~~--------g~~~d~-H~---  232 (285)
T d1qtwa_         167 GVED--KSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTF--------GSRVDR-HH---  232 (285)
T ss_dssp             HCSC--GGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT--------TCCCCC-EE---
T ss_pred             Hhcc--cccceEecccchHHHcCCCcccHHHHHHHHHHHHHHhhhhhheEEeeccCCCCC--------CCCccc-cc---
Confidence            4421  2233332 5321       334544444444333333 3334688999864321        011121 22   


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcC---CC----CCCCChhhHHHHHHHHHHHh
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGL---GV----ETNVDLRKLMLAGDFINKHL  430 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~---Gi----~t~iDl~~L~~la~~v~~~~  430 (452)
                      .+|        .|+.+.+.++..|+..   |+    ++ .+.+...+-.+++++..
T Consensus       233 ~~G--------~G~id~~~~~~~L~~~~~~g~~iilE~-~~~~~~~~~i~~lr~~~  279 (285)
T d1qtwa_         233 SLG--------EGNIGHDAFRWIMQDDRFDGIPLILET-INPDIWAEEIAWLKAQQ  279 (285)
T ss_dssp             CTT--------TSSSCSHHHHHHHTCGGGTTSEEEECC-SCGGGHHHHHHHHHHHT
T ss_pred             CCC--------CCCcCHHHHHHHHhhhCCCCCeEEEeC-CCCccCHHHHHHHHHhh
Confidence            244        4899999999999974   43    22 23334444455666554

>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Bacillus anthracis [TaxId: 1392]

Probab=95.81  E-value=0.13  Score=47.99  Aligned_cols=220  Identities=11%  Similarity=0.136  Sum_probs=120.1

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcc--ccc--CCHHHHHHHHHhccCC-ceeEEecchhhhhhhhhhhhhccch-hhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWV--PQL--ADARDVMEAVRDLEGA-RLPVLTPNLKVILQRSILFQQCHAS-VISS  224 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~--p~~--~D~e~v~~~i~~~~~~-~l~~l~~~~~~~i~r~~~~~~~~~~-~i~~  224 (452)
                      ...++...+.|.+.+++ |..+|+-.  +.+  .+.++..+.+++ .+. .+.+..|=.-+       ......+ ..+.
T Consensus        16 ~~a~~~a~~~g~~~~Qi-F~~~p~~~~~~~~~~~~~~~~~~~~~~-~~i~~i~vHapY~iN-------las~~~~~~r~~   86 (297)
T d1xp3a1          16 LAASEEAVSYGATTFMI-YTGAPQNTRRKPIEELNIEAGRKHMEQ-NGIEEIIIHAPYIIN-------VGNTTKPETFQL   86 (297)
T ss_dssp             HHHHHHHHTTTCSSEEE-CSSCTTCCCCCCGGGGCHHHHHHHHHH-TTCCCEEEECCTTCC-------TTCCSCHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEE-ECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCchhhhcCceEee-------ccccccHHHHHH
Confidence            44556777889999988 33344311  112  244444445543 233 24444442110       0000011 1111


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                      ......++++.|.+.|+..+.|+-+-+      ..+.+++++++++.+.++.+.+....+...+...-+....-..+++.
T Consensus        87 Si~~l~~~l~~a~~lG~a~~vV~HpG~------~~~~~~e~~l~~~~~~l~~i~~~~~~~~i~lE~~a~~~~~~g~~~ee  160 (297)
T d1xp3a1          87 GVDFLRMEIERTSALGVAKQIVLHPGA------HVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMAGKGTECGRSFEE  160 (297)
T ss_dssp             HHHHHHHHHHHHHHSSSCCEEEECCEE------CTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCCCCTTEECCSHHH
T ss_pred             HHHHHHHHHHHHHHhccCcEEeeCCcc------cccCCHHHHHHHHHHHHHHHhhhcccceEEEEeccccccccCCCHHH
Confidence            111123578889999964444443321      24567899999999888887555445544454432222222356788


Q ss_pred             HHHHHHHHHHCCcCEEEEc-CC-----cCCCcHHHHHHHHHHHHHhCCCccE-EEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          305 VAYVAKELHDMGCFEISLG-DT-----IGVGTPGTVVPMLEAVMAVVPVEKL-AVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~-DT-----~G~~~P~~v~~li~~l~~~~p~~~l-~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      +.++.+.+..  .+.+.+| ||     .|+-......+++..+.+..+...| .+|+||..+--        -.+.|. +
T Consensus       161 l~~ii~~~~~--~~~vgvClDt~H~~aaG~~~~~~~~~~l~~f~~~~G~~~i~~iHlnDs~~~~--------gs~~Dr-H  229 (297)
T d1xp3a1         161 IAKIIDGVKY--NEKLSVCFDTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQVLHINDSKNVR--------GAGKDR-H  229 (297)
T ss_dssp             HHHHHHHCTT--GGGEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT--------TCCCCC-E
T ss_pred             HHHHHHHhcc--ccceeeeccHHHHHHhccChhhHHHHHHHHHHHhhchhheeEEEEecccCcC--------CCCccc-c
Confidence            8887776542  2333333 65     4555566778888888887764344 78999975421        122342 2


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .   -+|        .|+.+.+.+...|+.
T Consensus       230 ~---~iG--------~G~I~~~~l~~ll~~  248 (297)
T d1xp3a1         230 E---NIG--------FGHIGYKALHHIVHH  248 (297)
T ss_dssp             E---CTT--------SSSSCHHHHHHHHTC
T ss_pred             C---CCC--------CCCcCHHHHHHHHhc
Confidence            2   233        478888888888875

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=95.80  E-value=0.082  Score=47.85  Aligned_cols=212  Identities=14%  Similarity=0.146  Sum_probs=106.2

Q ss_pred             HHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhcc----chhhhhhh
Q 012949          152 ELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCH----ASVISSNL  226 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~----~~~i~~~~  226 (452)
                      +.++...++|++.||+.... .+.. ..-.+.+++.+.+.. .++++.++.+...        |....    ...++.  
T Consensus        18 ~~l~~a~~~Gf~~IEl~~~~~~~~~-~~~~~~~~l~~~l~~-~gl~i~~~~~~~~--------~~~~~~~~~~~~~~~--   85 (278)
T d1i60a_          18 LDLELCEKHGYDYIEIRTMDKLPEY-LKDHSLDDLAEYFQT-HHIKPLALNALVF--------FNNRDEKGHNEIITE--   85 (278)
T ss_dssp             HHHHHHHHTTCSEEEEETTTHHHHH-TTSSCHHHHHHHHHT-SSCEEEEEEEEEC--------CSSCCHHHHHHHHHH--
T ss_pred             HHHHHHHHHCcCEEEeCCccccccc-cCcccHHHHHHHHHH-cCCcEEEEecCCC--------CCCCCHHHHHHHHHH--
Confidence            34567779999999995321 0110 001234555555543 3555555442211        11100    111111  


Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCS----IEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s----~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                        ....++.|...|++.|.+.....+      .+.+    .+..++.+.++.++|++.|+.+.  +.. .+-+...-.++
T Consensus        86 --~~~~i~~a~~lG~~~i~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~-~~~~~~~~~~~  154 (278)
T d1i60a_          86 --FKGMMETCKTLGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEF-VGHPQCTVNTF  154 (278)
T ss_dssp             --HHHHHHHHHHHTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EEC-CCCTTBSSCSH
T ss_pred             --HHHHHHHHHHcCCCccccccccCC------CCCCHHHHHHHHHHHHHHHHHHHHHhCCeee--eee-ccccccccCCH
Confidence              124678888899999887653221      1223    34566677788899999998764  331 11122222356


Q ss_pred             HHHHHHHHHHHHCCcC--EEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecc
Q 012949          303 SKVAYVAKELHDMGCF--EISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSV  380 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad--~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv  380 (452)
                      +.+.++++.+   +-+  .+++ ||. .+.  ....-+..+.+..+.-...+|.+|..+...         | ...+..-
T Consensus       155 ~~~~~ll~~v---~~~~vg~~~-D~~-h~~--~~~~~~~~~~~~~~~~i~~vHl~D~~~~~~---------~-~~~~~~~  217 (278)
T d1i60a_         155 EQAYEIVNTV---NRDNVGLVL-DSF-HFH--AMGSNIESLKQADGKKIFIYHIDDTEDFPI---------G-FLTDEDR  217 (278)
T ss_dssp             HHHHHHHHHH---CCTTEEEEE-EHH-HHH--HTTCCHHHHHTSCGGGEEEEEECEECCCCT---------T-TCCGGGE
T ss_pred             HHHHHHHHHh---hcccccccc-cch-hhh--cCCCCHHHHHHhccccceEEEEeecccccc---------c-ccccccc
Confidence            6666666544   333  3333 642 110  001112233333333235789888654421         0 0000000


Q ss_pred             cCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          381 AGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       381 ~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      .       .|| .|..+..+++..|+..|++
T Consensus       218 ~-------~pG-~G~id~~~~~~~l~~~gy~  240 (278)
T d1i60a_         218 V-------WPG-QGAIDLDAHLSALKEIGFS  240 (278)
T ss_dssp             E-------STT-SSSSCHHHHHHHHHHTTCC
T ss_pred             c-------CCC-CcccCHHHHHHHHHHHCCC
Confidence            0       122 4789999999999987765

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.71  E-value=0.15  Score=47.69  Aligned_cols=191  Identities=13%  Similarity=0.135  Sum_probs=122.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEecchhhhhhhhhhhhhccch
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .++.++...+++...+..-+.|--.+...-++.    ..+.+...++.+   .++.+.....             .+   
T Consensus        24 v~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vpV~lHlD-------------H~---   83 (284)
T d1gvfa_          24 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLD-------------HH---   83 (284)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEEE-------------EE---
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhC----CHHHHHHHHHHHHHhcCCeEEeeec-------------cc---
Confidence            478899999999999988886644333211111    223333333322   2332222110             01   


Q ss_pred             hhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---
Q 012949          221 VISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---  297 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---  297 (452)
                             ...+.+++|+++|.+-|.+=.|.          .+.+|.++..++++++|+..|+.|++.|-..-|.++.   
T Consensus        84 -------~~~e~i~~ai~~GftSVMiD~S~----------lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~  146 (284)
T d1gvfa_          84 -------ESLDDIRRKVHAGVRSAMIDGSH----------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSV  146 (284)
T ss_dssp             -------CCHHHHHHHHHTTCCEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC--------
T ss_pred             -------cchHHHHHHHhcCCCeEEEECCC----------CCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccc
Confidence                   12358899999999988864432          2468999999999999999999999888875444332   


Q ss_pred             -----CCCCHHHHHHHHHHHHHCCcCEEEEc--CCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          298 -----GAIPPSKVAYVAKELHDMGCFEISLG--DTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       298 -----~r~d~e~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                           ..++|+...+++++   .|+|.+.++  -+=|.-  .|.-=.++++.+++.++ +||.+|  -.-|..-.....|
T Consensus       147 ~~~~~~~T~peea~~Fv~~---TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~-vPLVlH--GgSG~~~e~i~~a  220 (284)
T d1gvfa_         147 DAESAFLTDPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLH--GASDVPDEFVRRT  220 (284)
T ss_dssp             ---CCSSCCHHHHHHHHHH---HCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCC-SCEEEC--CCTTCCHHHHHHH
T ss_pred             cccccccCCHHHHHHHHHH---hCCCEEeeecCceeeccCCCCccccchhhhhhcccc-CCeEee--CCCCCCHHHHHHH
Confidence                 14788888877764   589976553  222221  22223467888888876 478775  5668888899999


Q ss_pred             HHcCCCEEe
Q 012949          369 LQMGISTVD  377 (452)
Q Consensus       369 l~aGa~~VD  377 (452)
                      +..|+.-|+
T Consensus       221 i~~Gi~KiN  229 (284)
T d1gvfa_         221 IELGVTKVN  229 (284)
T ss_dssp             HHTTEEEEE
T ss_pred             HHcCeEEEE
Confidence            999987554

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.12  Score=46.44  Aligned_cols=149  Identities=21%  Similarity=0.232  Sum_probs=98.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +.++-.++++.|.+.||+.||+++- +|       .+.+.++.++ +.+++.+.+-+  .                    
T Consensus        24 ~~~~~~~~~~al~~~Gi~~iEitl~-~~-------~a~~~I~~l~~~~p~~~vGaGT--V--------------------   73 (212)
T d1vhca_          24 NADDILPLADTLAKNGLSVAEITFR-SE-------AAADAIRLLRANRPDFLIAAGT--V--------------------   73 (212)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEETT-ST-------THHHHHHHHHHHCTTCEEEEES--C--------------------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHhcCCCceEeeee--c--------------------
Confidence            5678899999999999999999974 22       2345556664 34565544322  0                    


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHH
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSK  304 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~  304 (452)
                         .+.+++++++++|++.+.-  +.-+                  .+++++|++.++.+..           +-.+|.+
T Consensus        74 ---~~~~~~~~a~~aGa~FivS--P~~~------------------~~v~~~a~~~~i~~iP-----------Gv~TpsE  119 (212)
T d1vhca_          74 ---LTAEQVVLAKSSGADFVVT--PGLN------------------PKIVKLCQDLNFPITP-----------GVNNPMA  119 (212)
T ss_dssp             ---CSHHHHHHHHHHTCSEEEC--SSCC------------------HHHHHHHHHTTCCEEC-----------EECSHHH
T ss_pred             ---ccHHHHHHHHhhCCcEEEC--CCCC------------------HHHHHHHHhcCCCccC-----------CcCCHHH
Confidence               1245899999999996642  2211                  3678999999998652           2234544


Q ss_pred             HHHHHHHHHHCCcCEEEEcCCcCCCcHHH-H--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCC
Q 012949          305 VAYVAKELHDMGCFEISLGDTIGVGTPGT-V--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGI  373 (452)
Q Consensus       305 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~-v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa  373 (452)
                      +.    .+.++|++.+-+       .|.. +  ..+++.++.-+|++++-    -+=|....|.-.=+.+|+
T Consensus       120 i~----~A~~~G~~~vK~-------FPA~~~gG~~~lkal~~p~p~~~~~----ptGGV~~~N~~~yl~~g~  176 (212)
T d1vhca_         120 IE----IALEMGISAVKF-------FPAEASGGVKMIKALLGPYAQLQIM----PTGGIGLHNIRDYLAIPN  176 (212)
T ss_dssp             HH----HHHHTTCCEEEE-------TTTTTTTHHHHHHHHHTTTTTCEEE----EBSSCCTTTHHHHHTSTT
T ss_pred             HH----HHHHCCCCEEEE-------ccccccchHHHHHHHhccccCCeEE----ecCCCCHHHHHHHHhCCC
Confidence            43    467799998887       3322 1  34678888878875442    345666677777777775

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.44  E-value=0.045  Score=50.81  Aligned_cols=180  Identities=21%  Similarity=0.265  Sum_probs=106.7

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCc-cccc-----------CCHHHHHHHHHhc---cCCceeEEecchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PKW-VPQL-----------ADARDVMEAVRDL---EGARLPVLTPNLKVI  207 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~-~p~~-----------~D~e~v~~~i~~~---~~~~l~~l~~~~~~~  207 (452)
                      ..+.+.-.++++.|.+.|+|.||+|+|-| |.. .|..           .+.+.+++.++++   ....+..|. -.+  
T Consensus        27 ~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~-Y~n--  103 (261)
T d1rd5a_          27 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLS-YYK--  103 (261)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC-CSH--
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeee-eec--
Confidence            46789999999999999999999998754 320 0110           1234445545432   112221111 111  


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                                  .+..       .+++.+.++|++.+-+.+-.-|                ...+..+.++++|+....-
T Consensus       104 ------------~~~~-------~~~~~~~~~GvdG~IipDlp~e----------------E~~~~~~~~~~~gl~~I~l  148 (261)
T d1rd5a_         104 ------------PIMF-------RSLAKMKEAGVHGLIVPDLPYV----------------AAHSLWSEAKNNNLELVLL  148 (261)
T ss_dssp             ------------HHHS-------CCTHHHHHTTCCEEECTTCBTT----------------THHHHHHHHHHTTCEECEE
T ss_pred             ------------chhh-------HHHHHHHhcCceeeeecCccHH----------------HHHHHHHHHhccccceEEE
Confidence                        1111       1677889999999988652211                2246668899999975321


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCCC--cHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHH
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGVG--TPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPN  364 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~AN  364 (452)
                      +     .|   .++.+.+.++++...  | +..+...=++|.-  .+.++.++++.+|+.. +.||.+=    +|...+.
T Consensus       149 v-----aP---tt~~~Ri~~i~~~a~--gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vG----FGI~~~e  213 (261)
T d1rd5a_         149 T-----TP---AIPEDRMKEITKASE--GFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVG----FGISKPE  213 (261)
T ss_dssp             E-----CT---TSCHHHHHHHHHHCC--SCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEE----SCCCSHH
T ss_pred             e-----cc---CCchhHHHHHHhcCc--chhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEE----cCCCCHH
Confidence            1     12   245566776666443  3 4455556676744  4568899999999875 4455552    3555555


Q ss_pred             HHHH-HHcCCCEE
Q 012949          365 ILIS-LQMGISTV  376 (452)
Q Consensus       365 aLaA-l~aGa~~V  376 (452)
                      -... .++|||.|
T Consensus       214 ~v~~~~~~gaDGv  226 (261)
T d1rd5a_         214 HVKQIAQWGADGV  226 (261)
T ss_dssp             HHHHHHHTTCSEE
T ss_pred             HHHHHHhcCCCEE
Confidence            5544 55688643

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=95.16  E-value=1.1  Score=40.57  Aligned_cols=214  Identities=14%  Similarity=0.052  Sum_probs=130.7

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc----cCCceeEEecchhhhhhhhhh-hhhccch
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL----EGARLPVLTPNLKVILQRSIL-FQQCHAS  220 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~----~~~~l~~l~~~~~~~i~r~~~-~~~~~~~  220 (452)
                      +.++.++-+..+...|.|.||+-...-.+    ..+.+++.+.++.+    .+..+-+-++...+     =| |.- .++
T Consensus        26 ~~~~~~~~~~~~~~~~aD~vE~RlD~l~~----~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~e-----GG~~~~-~~~   95 (252)
T d1gqna_          26 DINSVKAEALAYREATFDILEWRVDHFMD----IASTQSVLTAARVIRDAMPDIPLLFTFRSAKE-----GGEQTI-TTQ   95 (252)
T ss_dssp             SHHHHHHHHHHHTTSCCSEEEEEGGGCSC----TTCHHHHHHHHHHHHHHCTTSCEEEECCBGGG-----TCSBCC-CHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEEEccccc----cCCHHHHHHHHHHHHHhcCCCCEEEEEechhh-----CCCCCC-CHH
Confidence            56777777788888999999998653221    23455666655543    22222222222110     00 000 000


Q ss_pred             hhhhhhhccHHhHHHHHHcC-CCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIAAG-AKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~~G-i~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r  299 (452)
                             .+.+-++.+++.| ++.|.|-....+               +.+.+.++.+++.|.++.  +|+-.   +...
T Consensus        96 -------~~~~ll~~~~~~~~~d~iDiEl~~~~---------------~~~~~li~~a~~~~~~vI--~S~Hd---f~~T  148 (252)
T d1gqna_          96 -------HYLTLNRAAIDSGLVDMIDLELFTGD---------------ADVKATVDYAHAHNVYVV--MSNHD---FHQT  148 (252)
T ss_dssp             -------HHHHHHHHHHHHSCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEE--EEEEE---SSCC
T ss_pred             -------HHHHHHHHHHHcCCCceEeccccccH---------------HHHHHHHHHhhcCCCeEE--EEecC---CCCC
Confidence                   1234567888888 789988765433               233466788899998876  33310   1233


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHH---HHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAV---MAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l---~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .+.+.+.+..+.+.+.|||.+-|+=+  .-++.++.+++...   ++..+..|+-.-+=-.  ++...=+.+-..|....
T Consensus       149 P~~~~l~~~~~~m~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~--~G~~SRi~~~~~GS~~t  224 (252)
T d1gqna_         149 PSAEEMVSRLRKMQALGADIPKIAVM--PQSKHDVLTLLTATLEMQQHYADRPVITMSMAK--EGVISRLAGEVFGSAAT  224 (252)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTT--TTHHHHHCHHHHTCCEE
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEEec--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCC--cchhHHHHHHHhCCceE
Confidence            45689999999999999999988754  34677777776554   4444444544433222  34556677777898888


Q ss_pred             eecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          377 DCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       377 D~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      -+++.   + |-|   .|+.+++++-..|+.
T Consensus       225 ya~~~---~-~sA---PGQ~~~~~l~~~l~~  248 (252)
T d1gqna_         225 FGAVK---Q-ASA---PGQIAVNDLRSVLMI  248 (252)
T ss_dssp             ECBSS---S-CCS---TTCCBHHHHHHHHHH
T ss_pred             eccCC---C-CCC---CCCCCHHHHHHHHHH
Confidence            88874   3 444   559999998877764

>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Escherichia coli [TaxId: 562]

Probab=95.04  E-value=0.17  Score=48.94  Aligned_cols=136  Identities=20%  Similarity=0.175  Sum_probs=94.2

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----------CCCC
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----------GAIP  301 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----------~r~d  301 (452)
                      .+.+++..|.+-|.+=.|.          .+.++.++.-++++++|++.|+.|++.|-..-|.++.          -.++
T Consensus       129 ~~~~~~~~gfsSVMiDgS~----------l~~eeNi~~Tk~vve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~  198 (358)
T d1dosa_         129 HFAATGKPLFSSHMIDLSE----------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQ  198 (358)
T ss_dssp             HHHHHSSCSCSEEEECCTT----------SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCC
T ss_pred             HHHHhCCCCCccccCCCCc----------CCHHHHHHHHHHHHHHHhhhCCeEEEeeeeeecccCCccccccchhhccCC
Confidence            3444555568887764442          3568999999999999999999999888776554441          1478


Q ss_pred             HHHHHHHHHHHH-HCCcCEEEEc--CCcCC-------CcHHHHHHHHHHHHHhC--CCccEEEEeCCCcCcHHHHHHHHH
Q 012949          302 PSKVAYVAKELH-DMGCFEISLG--DTIGV-------GTPGTVVPMLEAVMAVV--PVEKLAVHLHDTYGQSLPNILISL  369 (452)
Q Consensus       302 ~e~l~~~a~~l~-~~Gad~I~L~--DT~G~-------~~P~~v~~li~~l~~~~--p~~~l~vH~Hnd~GlA~ANaLaAl  369 (452)
                      |+...+.++++. .-|+|.+.++  -.=|.       +.|.-..++.+.+++..  |..++.+=.|--.|..-.....|+
T Consensus       199 peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai  278 (358)
T d1dosa_         199 PEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSV  278 (358)
T ss_dssp             HHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCccceeeeeccchhhhcCCCCccCCchhhHHHHHHHHHHhCCCCcccceeccCCCCCcHHHHHHHH
Confidence            888876665544 4578755443  22222       36777888888888764  433344445667899999999999


Q ss_pred             HcCCCEEe
Q 012949          370 QMGISTVD  377 (452)
Q Consensus       370 ~aGa~~VD  377 (452)
                      +.|+.-|+
T Consensus       279 ~~GV~KiN  286 (358)
T d1dosa_         279 SYGVVKMN  286 (358)
T ss_dssp             HTTEEEEE
T ss_pred             HcCCeEEe
Confidence            99987654

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=94.86  E-value=0.28  Score=43.85  Aligned_cols=172  Identities=16%  Similarity=0.139  Sum_probs=108.0

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      .+-++.|.+.|++.|-+-..- -.++|.+.-..+.++.++......+-+  ++-+..                       
T Consensus        17 ~~ei~~l~~~~~d~iHiDimD-g~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~-----------------------   72 (220)
T d1h1ya_          17 AAEADRMVRLGADWLHMDIMD-GHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPS-----------------------   72 (220)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEB-SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGG-----------------------
T ss_pred             HHHHHHHHHcCCCEEEEeeec-CccccccccCchhhhhhhhhcchhhhhHHHhcchh-----------------------
Confidence            445567888999987774210 012333332245667777655554443  221111                       


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHH
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYV  308 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~  308 (452)
                        +.++..+++|.+.|.+-.-+..               ....++++++|+.|.++...+.     |.   ++.+.+..+
T Consensus        73 --~~i~~~~~~g~~~I~~H~E~~~---------------~~~~~~i~~i~~~g~~~Glal~-----p~---t~~~~~~~~  127 (220)
T d1h1ya_          73 --DYVEPLAKAGASGFTFHIEVSR---------------DNWQELIQSIKAKGMRPGVSLR-----PG---TPVEEVFPL  127 (220)
T ss_dssp             --GGHHHHHHHTCSEEEEEGGGCT---------------TTHHHHHHHHHHTTCEEEEEEC-----TT---SCGGGGHHH
T ss_pred             --hhhHHhhhcccceeeecccccc---------------hhHHHHHHHHHHcCCCcceeec-----cc---cchhHHHHH
Confidence              2677788899999988764322               1234667889999998774443     22   345555555


Q ss_pred             HHHHHHCCcCEEEEc----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          309 AKELHDMGCFEISLG----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       309 a~~l~~~Gad~I~L~----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      ...+.  -+|.|.+.    .-.|...-..+.+.|+.+++..|+..|.+    |=|.-.-|+-...++||+.+=
T Consensus       128 l~~~~--~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~~~~~I~V----DGGIn~~~i~~l~~aGad~~V  194 (220)
T d1h1ya_         128 VEAEN--PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIV  194 (220)
T ss_dssp             HHSSS--CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             Hhccc--ccceEEEEecCCCCcccccchhhhHHHHHHHhcCCCceEEE----EecCCHHHHHHHHHCCCCEEE
Confidence            43221  25655443    44555555677888899999888877777    888888899999999999663

>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Hypothetical protein YgbM (EC1530)
domain: Hypothetical protein YgbM (EC1530)
species: Escherichia coli [TaxId: 562]

Probab=94.82  E-value=0.23  Score=43.44  Aligned_cols=213  Identities=10%  Similarity=-0.013  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      +|.++.+   +...++|++.||+-.+       .-.+.+++.+.+++ .+.++..+...... ++.............+.
T Consensus        15 ~pl~e~i---~~a~~~Gf~gIEl~~~-------~~~~~~~~~~~l~~-~gl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   82 (260)
T d1k77a_          15 VPFIERF---AAARKAGFDAVEFLFP-------YNYSTLQIQKQLEQ-NHLTLALFNTAPGD-INAGEWGLSALPGREHE   82 (260)
T ss_dssp             SCGGGHH---HHHHHHTCSEEECSCC-------TTSCHHHHHHHHHH-TTCEEEEEECCCCC-GGGTCSCSTTCTTCHHH
T ss_pred             CCHHHHH---HHHHHhCCCEEEECCC-------CCCCHHHHHHHHHH-CCCcEEEEeccccc-ccccccccccCHHHHHH
Confidence            4565555   4566679999998432       12355666666665 24444333211100 00000000000000000


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEEeeec--CCCCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSI----EDSLVRYRAVAHAAKVLSIPVRGYVSCVVG--CPVEG  298 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~----e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g--~p~~~  298 (452)
                      .........+.+...|+..+.+......      ...+.    +...+.+.++..++.+.|+...  +.....  .+...
T Consensus        83 ~~~~~~~~~~~~~~l~~~~v~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~a~~~gi~~~--~e~~~~~~~~~~~  154 (260)
T d1k77a_          83 AHADIDLALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRIL--VEALSPGVKPHYL  154 (260)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBS
T ss_pred             HHHHHHHHHHHHHhhCCCeeeecCCCCC------CCccHHHHHHHHHHHHHHHhhHHHhcCceee--ccccccccccccc
Confidence            0001122456677788898887654332      12233    3445556677788889997754  221100  11112


Q ss_pred             CCCHHHHHHHHHHHHHCCcCEEEEc-CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEe
Q 012949          299 AIPPSKVAYVAKELHDMGCFEISLG-DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVD  377 (452)
Q Consensus       299 r~d~e~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD  377 (452)
                      -.+++.+.++++..   +.+.+.+. || +.+.... ...+..+++..+- -..+|..|..+-.                
T Consensus       155 ~~~~~~~~~l~~~v---~~~~~~~~~D~-~h~~~~~-~~~~~~~~~~~~~-i~~vH~~D~~~~~----------------  212 (260)
T d1k77a_         155 FSSQYQALAIVEEV---ARDNVFIQLDT-FHAQKVD-GNLTHLIRDYAGK-YAHVQIAGLPDRH----------------  212 (260)
T ss_dssp             CCSHHHHHHHHHHH---CCTTEEEEEEH-HHHHHHT-CCHHHHHHHTTTS-EEEEEECCTTTCC----------------
T ss_pred             cCCHHHHHHHHHHh---CCccccccccc-hhhhccC-CcHHHHHHHhccc-cceEeecCCCCCC----------------
Confidence            23455555555443   54434443 54 3222211 1223444443333 3678888865421                


Q ss_pred             ecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          378 CSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       378 ~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                          -.|        .|..+...++..|+..|++
T Consensus       213 ----~pG--------~G~id~~~i~~~L~~~GY~  234 (260)
T d1k77a_         213 ----EPD--------DGEINYPWLFRLFDEVGYQ  234 (260)
T ss_dssp             ----CSS--------SSSSCHHHHHHHHHHTTCC
T ss_pred             ----CCC--------CcccCHHHHHHHHHHhCCC
Confidence                122        4889999999999998876

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.81  E-value=0.68  Score=42.53  Aligned_cols=167  Identities=13%  Similarity=0.161  Sum_probs=95.9

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCC-CCcccccCCHHHHHHHHH----hccC--CceeEE
Q 012949          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVS-PKWVPQLADARDVMEAVR----DLEG--ARLPVL  200 (452)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~~~p~~~D~e~v~~~i~----~~~~--~~l~~l  200 (452)
                      -|+-.|+ |-..--+..++.+..++-++.|.+.|.+.|++|--++ |..-| . +.++.++++.    .+..  +.+++ 
T Consensus         7 GIlN~Tp-DSFsdgg~~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~-i-s~~eE~~Rl~pvi~~l~~~~~~iSI-   82 (264)
T d1ad1a_           7 GILNVTP-DSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEM-I-TVEEELNRVLPVVEAIVGFDVKISV-   82 (264)
T ss_dssp             EEEECCG-GGCSSTTTTCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-C-CHHHHHHHHHHHHHHHTTSSSEEEE-
T ss_pred             EEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCc-C-CHHHHHHhhhhHhhhhcccCcccch-
Confidence            3555665 5555555568999999999999999999999996432 32222 2 3444455443    2222  22221 


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEE-ecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIF-ASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~-~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                       ...                        ..+-.++|++.|++.|.=. ....|                  .++.+.+++
T Consensus        83 -DT~------------------------~~eVa~~al~~Ga~iINDVs~g~~d------------------~~~~~~va~  119 (264)
T d1ad1a_          83 -DTF------------------------RSEVAEACLKLGVDIINDQWAGLYD------------------HRMFQVVAK  119 (264)
T ss_dssp             -ECS------------------------CHHHHHHHHHTTCCEEEETTTTSSC------------------THHHHHHHH
T ss_pred             -hhh------------------------hHHHHHHHHhcCCcEeecccccccc------------------ccHHHHHhh
Confidence             111                        1236678999999999843 23333                  134466777


Q ss_pred             CCCcEEEEEEeeecCCCCCCCC---HHHHHHHHHHHHHCCcC--EEEEcCCcCCC-cHHHHHHHHHHHHH
Q 012949          280 LSIPVRGYVSCVVGCPVEGAIP---PSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMA  343 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~~r~d---~e~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~li~~l~~  343 (452)
                      .+..+.  +|+.-+.|.....-   .+++..-++.+..+|++  .|.+-=-.|.. ++++-.++++.+..
T Consensus       120 ~~~~~i--lmH~~~~~~~~~~~~~v~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~  187 (264)
T d1ad1a_         120 YDAEIV--LMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDE  187 (264)
T ss_dssp             TTCEEE--EECCCCTTCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHH
T ss_pred             cCccee--eeeeccccccCccchhhhhHHHHHHHHHHhhccccceEEeccCcCccccchhHHHHHHHHHH
Confidence            887654  56532222111000   12344455567788874  66664344543 56777777776643

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=94.73  E-value=0.024  Score=53.03  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=87.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCC-CC-ccccc-----------CCHHHHHHHHHhc---cCCceeEEecchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVS-PK-WVPQL-----------ADARDVMEAVRDL---EGARLPVLTPNLKVI  207 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s-~~-~~p~~-----------~D~e~v~~~i~~~---~~~~l~~l~~~~~~~  207 (452)
                      ..+.+.-+++++.|++ |+|.||+|+|-| |. -.|..           .+.+++++.++++   ....+..|+      
T Consensus        26 ~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~------   98 (271)
T d1ujpa_          26 FPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMT------   98 (271)
T ss_dssp             SSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEEC------
T ss_pred             CCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEe------
Confidence            3577888999999987 999999998754 31 00111           1223444444432   222222111      


Q ss_pred             hhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 012949          208 LQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGY  287 (452)
Q Consensus       208 i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~  287 (452)
                            |-..   +   +++...+.++.+.++|++.+-+.+-.-|                ...+..+.++++|+.... 
T Consensus        99 ------Y~N~---i---~~~G~~~F~~~~~~aGvdGliipDLP~e----------------e~~~~~~~~~~~gl~~I~-  149 (271)
T d1ujpa_          99 ------YLNP---V---LAWGPERFFGLFKQAGATGVILPDLPPD----------------EDPGLVRLAQEIGLETVF-  149 (271)
T ss_dssp             ------CHHH---H---HHHCHHHHHHHHHHHTCCEEECTTCCGG----------------GCHHHHHHHHHHTCEEEC-
T ss_pred             ------echh---h---hhCCchhHhHHHhhcCceeEeccchhhh----------------hHHHHHHHhhccccceee-
Confidence                  1110   0   1122345788999999998887653211                123556788889987531 


Q ss_pred             EEeeecCCCCCCCCHHHHHHHHHHHHHCC-cCEEEEcCCcCC--CcHHHHHHHHHHHHHhCCCccEEE
Q 012949          288 VSCVVGCPVEGAIPPSKVAYVAKELHDMG-CFEISLGDTIGV--GTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       288 l~~~~g~p~~~r~d~e~l~~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      +.    .|   .++.+.+.++++...  | +..|...-++|.  ..|.++.++++.+|+.. +.|+.+
T Consensus       150 lv----sP---tT~~eRi~~i~~~s~--GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~v  207 (271)
T d1ujpa_         150 LL----AP---TSTDARIATVVRHAT--GFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAV  207 (271)
T ss_dssp             EE----CT---TCCHHHHHHHHTTCC--SCEEEECC------------CCHHHHHHHHTTC-CSCEEE
T ss_pred             cc----CC---CcchHHHHHHHHhCc--chhhhhcccCccCccccchHHHHHHHHhhhccc-cCCeEE
Confidence            11    12   235666766665432  3 456666777777  46778999999999864 445544

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.17  E-value=0.067  Score=48.15  Aligned_cols=198  Identities=9%  Similarity=-0.069  Sum_probs=102.8

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHH
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQ  231 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~  231 (452)
                      .+++.+.++|++.||+.....    +.-.+.+++.+.++. .++++....+...        +... ....+.    ..+
T Consensus        23 ~~l~~~a~~G~dgIEi~~~~~----~~~~~~~~l~~~~~~-~GL~i~~~~~~~~--------~~~~-~~~~~~----~~~   84 (250)
T d1yx1a1          23 SFLPLLAMAGAQRVELREELF----AGPPDTEALTAAIQL-QGLECVFSSPLEL--------WRED-GQLNPE----LEP   84 (250)
T ss_dssp             GGHHHHHHHTCSEEEEEGGGC----SSCCCHHHHHHHHHH-TTCEEEEEEEEEE--------ECTT-SSBCTT----HHH
T ss_pred             HHHHHHHHhCCCEEEEecccC----CCcchHHHHHHHHHH-cCCEEEEeccccc--------ccCc-hhhHHH----HHH
Confidence            457888999999999963211    111356666666654 3555544332211        0000 000111    124


Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.|.+.|++.|++.......             .+.+.++.++|++.|+.+.  +..-   +...-.+++....+.+.
T Consensus        85 ~i~~A~~LG~~~v~~~~g~~~~-------------~~~l~~l~~~a~~~Gv~l~--iE~h---~~~~~~~~~~~~~~~~~  146 (250)
T d1yx1a1          85 TLRRAEACGAGWLKVSLGLLPE-------------QPDLAALGRRLARHGLQLL--VEND---QTPQGGRIEVLERFFRL  146 (250)
T ss_dssp             HHHHHHHTTCSEEEEEEECCCS-------------SCCHHHHHHHHTTSSCEEE--EECC---SSHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEeecccch-------------hHHHHHHHHHHHHcCCEEE--EEeC---CCcccCCHHHHHHHHHH
Confidence            7888999999999988653321             1335677889999998764  2210   00001133333334333


Q ss_pred             HHHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCC
Q 012949          312 LHDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAK  390 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~  390 (452)
                      +.......-...|+.=...- ....+.++.++.   - ...+|++|..+..          ..++     .-+|      
T Consensus       147 ~~~~~p~vg~~~D~~h~~~~g~dp~~~~~~~~~---~-i~~vHvkD~~~~~----------~~~~-----~~~g------  201 (250)
T d1yx1a1         147 AERQQLDLAMTFDIGNWRWQEQAADEAALRLGR---Y-VGYVHCKAVIRNR----------DGKL-----VAVP------  201 (250)
T ss_dssp             HHHTTCSEEEEEETTGGGGGTCCHHHHHHHHGG---G-EEEEEECEEEECT----------TSCE-----EEEC------
T ss_pred             hhccCCccccccchHHHHHcCCcHHHHHHHhcC---C-EEEEEeccccCCC----------CCce-----ecCC------
Confidence            33222333333477543221 112333444333   2 3678888854321          0011     1132      


Q ss_pred             CCCCcccHHHHHHHHHcCCCCC
Q 012949          391 GASGNVATEDVVYMLSGLGVET  412 (452)
Q Consensus       391 graGNaalE~vv~~L~~~Gi~t  412 (452)
                        .|..++..++..|+.+|++.
T Consensus       202 --~G~~d~~~~~~~L~~~~~d~  221 (250)
T d1yx1a1         202 --PSAADLQYWQRLLQHFPEGV  221 (250)
T ss_dssp             --CCHHHHHHHHHHHTTSCTTC
T ss_pred             --CCCCCHHHHHHHHHhCCCCc
Confidence              46789999999999877654

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.99  E-value=0.7  Score=43.63  Aligned_cols=140  Identities=19%  Similarity=0.049  Sum_probs=91.1

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGA  299 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r  299 (452)
                      +..++|.++|.|.|.|-..        .|+..++.  .+|-|.|+=++.+.++++.+|+. +.++.+-++..  ....+-
T Consensus       147 ~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~--~~~~~g  224 (337)
T d1z41a1         147 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSAS--DYTDKG  224 (337)
T ss_dssp             HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECC--CCSTTS
T ss_pred             HHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEeccc--ccccCc
Confidence            4556777899999999754        23333222  36778898888888898888875 45555444432  112234


Q ss_pred             CCHHHHHHHHHHHHHCCcCEEEEcCCcC-----CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-C
Q 012949          300 IPPSKVAYVAKELHDMGCFEISLGDTIG-----VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-I  373 (452)
Q Consensus       300 ~d~e~l~~~a~~l~~~Gad~I~L~DT~G-----~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a  373 (452)
                      .+.+....+++.+.++|+|.+.+.--.-     ...|....++.+.+|+.+.. ++..-..-+   -...+..+|+.| |
T Consensus       225 ~~~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~i~---~~~~ae~~l~~g~~  300 (337)
T d1z41a1         225 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADM-ATGAVGMIT---DGSMAEEILQNGRA  300 (337)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCC-EEEECSSCC---SHHHHHHHHHTTSC
T ss_pred             cchhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCc-eEEEeCCcC---CHHHHHHHHHCCCc
Confidence            6788999999999999999887742211     12344456677788887653 555433211   345667788998 7


Q ss_pred             CEE
Q 012949          374 STV  376 (452)
Q Consensus       374 ~~V  376 (452)
                      |.|
T Consensus       301 D~V  303 (337)
T d1z41a1         301 DLI  303 (337)
T ss_dssp             SEE
T ss_pred             cee
Confidence            754

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=93.99  E-value=0.19  Score=48.33  Aligned_cols=142  Identities=18%  Similarity=0.070  Sum_probs=87.0

Q ss_pred             HHhHHHHHHcCCCEEEEEecC--------ChHHHhhh--cCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEEeeecCCC-
Q 012949          230 LQGFEAAIAAGAKEVAIFASA--------SEAFSKSN--INCSIEDSLVRYRAVAHAAKVL-SIP-VRGYVSCVVGCPV-  296 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~--------Sd~~~~~~--~~~s~e~~l~~~~~~v~~Ak~~-G~~-V~~~l~~~~g~p~-  296 (452)
                      .+..++|.++|.|.|.|-..-        |+..++..  +|-|.|+=++.+.++++.+|+. |-. |..-++..-..++ 
T Consensus       163 ~~AA~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~  242 (363)
T d1vyra_         163 RQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNV  242 (363)
T ss_dssp             HHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTB
T ss_pred             HHHHHHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccch
Confidence            346677889999999987532        22222222  5778888888888888888764 432 4333332100111 


Q ss_pred             -CCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcC-CC
Q 012949          297 -EGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMG-IS  374 (452)
Q Consensus       297 -~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aG-a~  374 (452)
                       .+-.+.+...++++.+.+.|+|.|.+..+.-...|.-...+.+.+++.++..-+....+ |    ...+..+|+.| ||
T Consensus       243 ~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~-t----~~~ae~~l~~G~~D  317 (363)
T d1vyra_         243 DNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY-T----AEKAEDLIGKGLID  317 (363)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC-C----HHHHHHHHHTTSCS
T ss_pred             hhcccchHHHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCC-C----HHHHHHHHHCCCcc
Confidence             23345678889999999999998888644322222222345566677776433444433 3    56678899999 67


Q ss_pred             EE
Q 012949          375 TV  376 (452)
Q Consensus       375 ~V  376 (452)
                      .|
T Consensus       318 lV  319 (363)
T d1vyra_         318 AV  319 (363)
T ss_dssp             EE
T ss_pred             ee
Confidence            66

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.99  E-value=1.6  Score=39.10  Aligned_cols=165  Identities=16%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHH-hccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          143 NTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVR-DLEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       143 ~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~-~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      ...+.++..++++...+.|+..+.+-    |.|+|          .++ .+.++++.+.+ +-.      .|.  .+.+ 
T Consensus        12 p~~t~~~i~~~~~~A~~~~~aavcV~----P~~v~----------~a~~~l~~~~v~tVi-gFP------~G~--~~~~-   67 (226)
T d1vcva1          12 PYLTVDEAVAGARKAEELGVAAYCVN----PIYAP----------VVRPLLRKVKLCVVA-DFP------FGA--LPTA-   67 (226)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH----------HHGGGCSSSEEEEEE-STT------TCC--SCHH-
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH----------HHHHhccCCceEEEE-ecC------ccc--CcHH-
Confidence            35789999999999999999998883    33332          233 23566665543 111      111  1111 


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                            ......+ ++..|+++|.+.+..+-.     .....++..+.+..+++.+.  |..+-  +...     .+..+
T Consensus        68 ------~k~~e~~-a~~~GAdEID~Vin~~~~-----~~g~~~~v~~ei~~v~~~~~--~~~lK--VIlE-----t~~L~  126 (226)
T d1vcva1          68 ------SRIALVS-RLAEVADEIDVVAPIGLV-----KSRRWAEVRRDLISVVGAAG--GRVVK--VITE-----EPYLR  126 (226)
T ss_dssp             ------HHHHHHH-HHTTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEE--EECC-----GGGCC
T ss_pred             ------HHHHHHH-HHHcCCCeeEEEecHHHH-----hCCCHHHHHHHHHHHHhccC--CCeEE--EEec-----ccccC
Confidence                  1123444 556699999999876543     22345566666665555553  44333  2211     23457


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCC--------------CcHHHHHHHHHHHHHhCCCccEEEEeCC
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGV--------------GTPGTVVPMLEAVMAVVPVEKLAVHLHD  356 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~--------------~~P~~v~~li~~l~~~~p~~~l~vH~Hn  356 (452)
                      .+.+.++++.+.++|+|-|-  =++|.              .+|+.++.+-+.++. .+. ++++..--
T Consensus       127 ~~ei~~~~~~~~~aGadFIK--TSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~-~g~-~vgiKasG  191 (226)
T d1vcva1         127 DEERYTLYDIIAEAGAHFIK--SSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE-KGY-RLGVKMAG  191 (226)
T ss_dssp             HHHHHHHHHHHHHHTCSEEE--CCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH-HTC-CCEEEEES
T ss_pred             HHHHHHHHHHHHHcCcceee--ecccccCCcccccccCcccCcHHHHHHHHHHHHH-hCC-ceeEECcC
Confidence            78888899999999999764  46775              567777766555544 343 46666543

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.74  E-value=1.7  Score=39.93  Aligned_cols=177  Identities=14%  Similarity=0.105  Sum_probs=101.5

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC-CHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI-PPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~-d~e~l~~~a~  310 (452)
                      +++.+.+.|.+-|-+.+...+       .-+.+..++.+.++.+.|++.|+++.+.+. ..+.+..... .++.+...++
T Consensus       111 sv~~a~~~GadaVk~lv~~~~-------d~~~e~~~~~~~~l~~~c~~~glp~llE~l-~~~~~~~~~~~~~~~i~~a~r  182 (291)
T d1to3a_         111 NAQAVKRDGAKALKLLVLWRS-------DEDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAAK  182 (291)
T ss_dssp             CHHHHHHTTCCEEEEEEEECT-------TSCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHHH
T ss_pred             CHHHHHhccCceEEEEEeeCC-------cccHHHHHHHHHHHHHHHHHcCCcceEEEE-ecCCCcccccchHHHHHHHHH
Confidence            578899999997766542211       112345667788899999999998764432 2333333333 3667899999


Q ss_pred             HHHHCCcCEEEEcCCc-CCCcHHHHHHHHHHHHHhCCCccEEE-EeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 012949          311 ELHDMGCFEISLGDTI-GVGTPGTVVPMLEAVMAVVPVEKLAV-HLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  388 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~-G~~~P~~v~~li~~l~~~~p~~~l~v-H~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  388 (452)
                      .+.++|+|.+-+.=+. +-.........+..+....+. ++-+ =.--+.---....-.|+++||..|-..=+=...   
T Consensus       183 ~~~e~GaDi~K~~~p~~~~~~~~~~~~~~~~~~~~~~~-p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~---  258 (291)
T d1to3a_         183 ELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINM-PWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS---  258 (291)
T ss_dssp             HHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCS-CEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG---
T ss_pred             HHHhcCCcEEEEecCCCchhhhHHHHHHHHHHhhcCCC-cEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhC---
Confidence            9999999988876432 223344444445555554443 3222 222222233344455888998755431000001   


Q ss_pred             CCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCC
Q 012949          389 AKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGR  432 (452)
Q Consensus       389 a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~  432 (452)
                         ..+.+..+++   ++..+      .+.|.++.+.+.+.+++
T Consensus       259 ---~~~~~~~~~~---l~~~~------~~~l~~l~~i~~~~~~~  290 (291)
T d1to3a_         259 ---VIGLPDTELM---LRDVS------APKLQRLGEIVDEMMGK  290 (291)
T ss_dssp             ---GTTCSCHHHH---HHHTH------HHHHHHHHHHHHHHHHT
T ss_pred             ---cccCccHHHH---HHHHH------HHHHHHHHHHHHHHhcc
Confidence               1233455543   44432      35788888888887754

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.39  E-value=0.052  Score=49.08  Aligned_cols=219  Identities=13%  Similarity=0.066  Sum_probs=107.8

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .++.++.+   +...++|++.||+...-.....+.-.+.+++.+.++. .++++.++.+...        |...+. ...
T Consensus        14 ~~~lee~l---~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~--------~~~~~~-~~~   80 (275)
T d2g0wa1          14 EVSFPKRV---KVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-HNMKVTEVEYITQ--------WGTAED-RTA   80 (275)
T ss_dssp             TSCHHHHH---HHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-TTCEEEEEECBCC--------CSSTTT-CCH
T ss_pred             CCCHHHHH---HHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHH-cCCceEEEeeccc--------cCCCch-hHH
Confidence            45776555   5677899999999531000000111345556566654 4666655543211        111000 000


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                      ......++.++.|...|++.|.+.....         ...+...+.+.++.+.+++.|+.+.    +.   +...-.+.+
T Consensus        81 ~~~~~~~~~i~~A~~lG~~~v~~~~~~~---------~~~~~~~~~l~~l~~~a~~~gi~le----~~---~~~~~~t~~  144 (275)
T d2g0wa1          81 EQQKKEQTTFHMARLFGVKHINCGLLEK---------IPEEQIIVALGELCDRAEELIIGLE----FM---PYSGVADLQ  144 (275)
T ss_dssp             HHHHHHHHHHHHHHHHTCCEEEECCCSC---------CCHHHHHHHHHHHHHHHTTSEEEEE----CC---TTSSSCSHH
T ss_pred             HHHHHHHHHHHHHHHhCCceEecCCCCc---------hHHHHHHHHHHHHHHHHHhcCeeEe----ee---ccCCCCCHH
Confidence            0000112467778888999887754322         2356677778888888888775442    21   112223567


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      .+.++.+.+..  ...-..-|+.=...-   .+-...+.+.+++--..+|.+|...-.......--..+    . ..  .
T Consensus       145 ~~~~l~~~v~~--~~~g~~~D~~h~~~~---~~~~~~~~~~~~~ri~~vHikD~~~~~~~~~~~~~~~~----~-~~--p  212 (275)
T d2g0wa1         145 AAWRVAEACGR--DNAQLICDTWHWARA---NQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHD----R-LA--P  212 (275)
T ss_dssp             HHHHHHHHHTC--TTEEEEEEHHHHHHT---TCCGGGGTTCCGGGEEEEEECBCCSSCCSSHHHHHHHB----C-BC--T
T ss_pred             HHHHHHHHhcc--ccccccccchHHHhc---CCCHHHHHHhcccceeEEEEEeccCCcccccccccccc----c-cC--C
Confidence            77776665531  222222243211100   00011222333333467888886543211111100111    0 11  2


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCCCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLGVE  411 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~Gi~  411 (452)
                      |        .|..+...++.+|+..|++
T Consensus       213 G--------~G~id~~~i~~~L~~~gy~  232 (275)
T d2g0wa1         213 G--------EGYGDTVGFAKILKEHGVN  232 (275)
T ss_dssp             T--------SSSSCHHHHHHHHHHHTCC
T ss_pred             C--------CCCcCHHHHHHHHHHcCCC
Confidence            2        4789999999999987664

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=93.30  E-value=1.1  Score=40.58  Aligned_cols=143  Identities=13%  Similarity=0.084  Sum_probs=88.2

Q ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCccccc-CCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          144 TVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQL-ADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       144 ~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~-~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .++.++..++++.+.+.|+..+..+..     .|-+ .|..+++.............++-+.-                 
T Consensus        47 ~ls~e~~~~li~~~~~~g~~~v~~~GG-----Ep~l~~~~~e~i~~~~~~~~~~~~~~Tng~l-----------------  104 (327)
T d1tv8a_          47 LLTFDEMARIAKVYAELGVKKIRITGG-----EPLMRRDLDVLIAKLNQIDGIEDIGLTTNGL-----------------  104 (327)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEESS-----CGGGSTTHHHHHHHHTTCTTCCEEEEEECST-----------------
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEeCCC-----cccccccHHHHHHHHhhhccccccccccccc-----------------
Confidence            378999999999999999999887542     1222 23333444443333333223333321                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCCh--HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASE--AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd--~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                           ...+.++.++++|++.|.+.+...+  .|.... |.  .-.++.....++.+++.|+.+.+.+...      ...
T Consensus       105 -----l~~~~~~~l~~~g~~~i~iSldg~~~e~~~~~r-g~--~g~~~~~~~~~~~~~~~g~~~~~~~~v~------~~~  170 (327)
T d1tv8a_         105 -----LLKKHGQKLYDAGLRRINVSLDAIDDTLFQSIN-NR--NIKATTILEQIDYATSIGLNVKVNVVIQ------KGI  170 (327)
T ss_dssp             -----THHHHHHHHHHHTCCEEEEECCCSSHHHHHHHH-SS--CCCHHHHHHHHHHHHHTTCEEEEEEEEC------TTT
T ss_pred             -----cchhHHHHHHHcCCCEEeeecccCCHHHhhhhe-ee--ccccchhhhHHHHHHHcCCCcceeEEEe------cCc
Confidence                 1234778888999999999876553  233221 11  1225666778899999999987655432      123


Q ss_pred             CHHHHHHHHHHHHHCCcCEEEE
Q 012949          301 PPSKVAYVAKELHDMGCFEISL  322 (452)
Q Consensus       301 d~e~l~~~a~~l~~~Gad~I~L  322 (452)
                      ..+.+.++.+.+.+.+++...+
T Consensus       171 n~~~~~~~~~~~~~~~~~~~~~  192 (327)
T d1tv8a_         171 NDDQIIPMLEYFKDKHIEIRFI  192 (327)
T ss_dssp             TGGGHHHHHHHHHHTTCCEEEE
T ss_pred             cccccHHHHHHHHhhcccccee
Confidence            4566667788888888874443

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.16  E-value=0.48  Score=43.93  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=84.3

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVL-SIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~-G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      ..+.+.+.|+|.|.+-++.-.......++.......+.+.++++..|+. .+++.+-+.     |+.     +....+++
T Consensus       121 ~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~-----~~~-----~~~~~i~~  190 (312)
T d1gtea2         121 LSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-----PNV-----TDIVSIAR  190 (312)
T ss_dssp             HHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-----SCS-----SCHHHHHH
T ss_pred             HHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeeccc-----ccc-----hhHHHHHH
Confidence            3455667899977775543211111112111111123344555555553 556654443     222     23456778


Q ss_pred             HHHHCCcCEEEEcCCcC----------------------------CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCc-H
Q 012949          311 ELHDMGCFEISLGDTIG----------------------------VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-S  361 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G----------------------------~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A  361 (452)
                      .+.++|++.|.+.+|.+                            ........+.|+.+++.+|.++|.-=.    |- -
T Consensus       191 ~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~G----GI~~  266 (312)
T d1gtea2         191 AAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG----GIDS  266 (312)
T ss_dssp             HHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES----SCCS
T ss_pred             HHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEc----CCCC
Confidence            88899999999988853                            122344567788888888765543211    11 1


Q ss_pred             HHHHHHHHHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          362 LPNILISLQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       362 ~ANaLaAl~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      -.-++..+.+||+.|...-.=+-        .|.--++++...|+.
T Consensus       267 ~~d~~~~l~aGA~~Vqv~ta~~~--------~G~~~i~~i~~~L~~  304 (312)
T d1gtea2         267 AESGLQFLHSGASVLQVCSAVQN--------QDFTVIQDYCTGLKA  304 (312)
T ss_dssp             HHHHHHHHHTTCSEEEESHHHHT--------SCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCeeEECHhhhc--------cChHHHHHHHHHHHH
Confidence            24567788999998887544332        244556666555543

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=92.92  E-value=1.1  Score=40.86  Aligned_cols=210  Identities=14%  Similarity=0.161  Sum_probs=112.8

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEEecCCCCCcccccCCHHHHHHHHHhc---cCCceeEEe
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLP--VVEATSFVSPKWVPQLADARDVMEAVRDL---EGARLPVLT  201 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~--~IEvG~~~s~~~~p~~~D~e~v~~~i~~~---~~~~l~~l~  201 (452)
                      +.++|-||=      +...+.++..++++...+.|+.  .|.+    +|.|+|      ...+.++..   .++++...+
T Consensus        12 ~~liDhTlL------~p~~T~~~I~~lc~eA~~~~~~~aaVCV----~P~~V~------~a~~~L~~~~~~~~v~v~tVi   75 (256)
T d2a4aa1          12 ICLTDHTFL------DENGTEDDIRELCNESVKTCPFAAAVCV----YPKFVK------FINEKIKQEINPFKPKIACVI   75 (256)
T ss_dssp             HTTEEEECC------CTTCCHHHHHHHHHHHHSSSSCCSEEEE----CGGGHH------HHHHHHHHHSSSCCSEEEEEE
T ss_pred             HHhccccCC------CCCCCHHHHHHHHHHHHHhCCCeEEEEe----CHHHHH------HHHHHhhhhccCCCceEEeec
Confidence            345677762      3356899999999999888854  4555    455554      234455432   245555443


Q ss_pred             --cchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          202 --PNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       202 --~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                        |.-           ..+.+       .....++.|++.|+++|.+.+..+-+..      ...+.+......+..+++
T Consensus        76 gFP~G-----------~~~~~-------~K~~Ea~~Ai~~GAdEID~Vin~~~l~~------g~~~~v~e~~~~i~~~~~  131 (256)
T d2a4aa1          76 NFPYG-----------TDSME-------KVLNDTEKALDDGADEIDLVINYKKIIE------NTDEGLKEATKLTQSVKK  131 (256)
T ss_dssp             STTTC-----------CSCHH-------HHHHHHHHHHHHTCSEEEEECCHHHHHH------SHHHHHHHHHHHHHHHHT
T ss_pred             CCCcc-----------cchHH-------HHHHHHHHHHHcCCCeEEEeccHHHHhc------CcHHHHHHHHHHHHHHHh
Confidence              321           11111       1234788899999999999987654321      122334444444555554


Q ss_pred             C-C-CcEEEEEEeeecCCCCCCCCHHHH-HHHHHHHHHCCcCEEEEcCCcC----CCcHHHHHHHHHHHHHhCC-----C
Q 012949          280 L-S-IPVRGYVSCVVGCPVEGAIPPSKV-AYVAKELHDMGCFEISLGDTIG----VGTPGTVVPMLEAVMAVVP-----V  347 (452)
Q Consensus       280 ~-G-~~V~~~l~~~~g~p~~~r~d~e~l-~~~a~~l~~~Gad~I~L~DT~G----~~~P~~v~~li~~l~~~~p-----~  347 (452)
                      . + ..+-  +..    + .+..+.+.. ......+.++|+|-|  +=++|    ..+|+.+..+.+.+++.+.     .
T Consensus       132 ~~~~~~lK--VIl----E-t~~L~~~e~i~~~~~~~~~aGadFV--KTSTG~~~~gat~~~v~~m~~~v~e~~~~~~~~g  202 (256)
T d2a4aa1         132 LLTNKILK--VII----E-VGELKTEDLIIKTTLAVLNGNADFI--KTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKN  202 (256)
T ss_dssp             TCTTSEEE--EEC----C-HHHHCSHHHHHHHHHHHHTTTCSEE--ECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGT
T ss_pred             hccCCeeE--eee----h-hhhcCcHHHHHHHHHHHHhcccHHH--HhccCCCCCCCCHHHHHHHHHHHHHHHhhccccC
Confidence            3 3 3333  221    1 112333444 444455678999965  45555    5789999998888875321     1


Q ss_pred             ccEEEEeCC---CcCcHHHHHHHHHH-cCCCEEeecccCCCC
Q 012949          348 EKLAVHLHD---TYGQSLPNILISLQ-MGISTVDCSVAGLGG  385 (452)
Q Consensus       348 ~~l~vH~Hn---d~GlA~ANaLaAl~-aGa~~VD~Sv~GlGe  385 (452)
                      -+++++.--   |+..|..-..++.+ .|..+++....=+|-
T Consensus       203 ~~~gVKASGGIrt~~~a~~~i~~g~~~lG~~~~~~~~fRIGt  244 (256)
T d2a4aa1         203 NKIGLKVSGGISDLNTASHYILLARRFLSSLACHPDNFRIGS  244 (256)
T ss_dssp             TCCEEEEESSCCSHHHHHHHHHHHHHHTC------CCEEEEE
T ss_pred             CceeEEecCCCCCHHHHHHHHHHHHHhcccccccCCceeeeH
Confidence            256666543   33334333333332 466666666665555

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=1.3  Score=40.92  Aligned_cols=171  Identities=15%  Similarity=0.168  Sum_probs=103.5

Q ss_pred             CCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh----c---cCC
Q 012949          124 PRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD----L---EGA  195 (452)
Q Consensus       124 p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~----~---~~~  195 (452)
                      |+-.-|+.+|+ |-..--+..++.+..++-++.|.+.|.+.|++|--+ .|...|  -+.++.++++..    +   .+.
T Consensus        15 P~IMGIlNvTP-DSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~--vs~eeE~~Rl~pvi~~l~~~~~~   91 (282)
T d1ajza_          15 PHVMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE--VSVEEELQRVIPVVEAIAQRFEV   91 (282)
T ss_dssp             CEEEEEEECCT-TTSTTTTCSSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCC--CCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CeEEEEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccccccccC--CcHHHHHHHHHHHHHHHhhcccc
Confidence            44455777777 666655566888999999999999999999999643 343222  244555555532    1   122


Q ss_pred             ceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHH
Q 012949          196 RLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAH  275 (452)
Q Consensus       196 ~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~  275 (452)
                      .+++  ...                        ..+-.++|+++|++.|.=....++           ++.       ++
T Consensus        92 ~iSI--DT~------------------------~~eVa~~al~~Ga~iINDvsg~~~-----------~~~-------~~  127 (282)
T d1ajza_          92 WISV--DTS------------------------KPEVIRESAKVGAHIINDIRSLSE-----------PGA-------LE  127 (282)
T ss_dssp             EEEE--ECC------------------------CHHHHHHHHHTTCCEECCTTTTCS-----------TTH-------HH
T ss_pred             eEEE--Eec------------------------ChHHHHHHHhcCceEEechhhccc-----------chh-------HH
Confidence            2222  111                        123568899999998875443333           112       23


Q ss_pred             HHHhCCCcEEEEEEeeecCCCCCCC-----C-----HHHHHHHHHHHHHCCc--CEEEEcCCcCCCc-HHHHHHHHHHHH
Q 012949          276 AAKVLSIPVRGYVSCVVGCPVEGAI-----P-----PSKVAYVAKELHDMGC--FEISLGDTIGVGT-PGTVVPMLEAVM  342 (452)
Q Consensus       276 ~Ak~~G~~V~~~l~~~~g~p~~~r~-----d-----~e~l~~~a~~l~~~Ga--d~I~L~DT~G~~~-P~~v~~li~~l~  342 (452)
                      .+++.+..+.  +++.-|.|..-..     +     .+++.+..+.+.++|+  +.|.|==-.|.+. +.+-.++++.+.
T Consensus       128 ~va~~~~~~v--lmh~~g~p~~~~~~~~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK~~~~n~~ll~~l~  205 (282)
T d1ajza_         128 AAAETGLPVC--LMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLA  205 (282)
T ss_dssp             HHHHHTCCEE--EECCSSCTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGG
T ss_pred             HhhccCceEE--EeccCCCccccccCCcccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcCCChhhhHHHHhhcc
Confidence            3444565554  6665554432111     1     1466667788889998  5777755566654 777777777764


Q ss_pred             H
Q 012949          343 A  343 (452)
Q Consensus       343 ~  343 (452)
                      .
T Consensus       206 ~  206 (282)
T d1ajza_         206 E  206 (282)
T ss_dssp             G
T ss_pred             h
Confidence            4

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=92.85  E-value=0.64  Score=42.86  Aligned_cols=217  Identities=12%  Similarity=0.057  Sum_probs=118.8

Q ss_pred             HHHHHHCCCCEEEEecCC--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhhc
Q 012949          154 IRRLVSSGLPVVEATSFV--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLWV  228 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~  228 (452)
                      ++.+.++|++.|=++++.  ....+|-  +-+.+++++.++.+.+ +.+++++..-       .||+. +.++.      
T Consensus        29 Ar~~e~aGf~a~~~ss~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d-------~GyG~-~~~v~------   94 (275)
T d1s2wa_          29 ARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDAD-------TGYGN-FNNAR------   94 (275)
T ss_dssp             HHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECC-------SSCSS-HHHHH------
T ss_pred             HHHHHHcCCCEEEhhHHHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecc-------ccccc-chHHH------
Confidence            455667899999988642  1112231  1234677777777643 4566555322       24543 22332      


Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhc-----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC--CCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNI-----NCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE--GAIP  301 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~-----~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~--~r~d  301 (452)
                        +.++...++|+.-|+|-+...+-..-...     =.+.++...+++.+++..+...+-+.   ..+    |+  ....
T Consensus        95 --~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~~~i~---ARt----Da~~~~~g  165 (275)
T d1s2wa_          95 --RLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIV---ARV----EAFIAGWG  165 (275)
T ss_dssp             --HHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEE---EEE----CTTTTTCC
T ss_pred             --HHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcceeEE---ecc----hhhhhcCC
Confidence              37788899999999999987653211111     23577777777555543333333332   111    11  1134


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeeccc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVA  381 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~  381 (452)
                      .+...+=++...++|||.|.+.-.  .-.|+....+........   ++-+.. ...|.-..  -.--+.|+++|-....
T Consensus       166 l~eai~R~~aY~eAGAD~vf~~~~--~~~~~~~~~~~~~~~~~~---pl~~~~-~~~~~~~~--~eL~~lGv~~v~~g~~  237 (275)
T d1s2wa_         166 LDEALKRAEAYRNAGADAILMHSK--KADPSDIEAFMKAWNNQG---PVVIVP-TKYYKTPT--DHFRDMGVSMVIWANH  237 (275)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCC--SSSSHHHHHHHHHHTTCS---CEEECC-STTTTSCH--HHHHHHTCCEEEECSH
T ss_pred             HHHHHHHHHHHHhcCCCeeeeccc--cCcHHHHHHHHHhhcCCC---CEEEec-ccccccHH--HHHHHcCCCEEEEchH
Confidence            677778888889999999998321  123444444434332222   333322 22333222  3455689999876555


Q ss_pred             CCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          382 GLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       382 GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      .+        ++-..++++++..|...|
T Consensus       238 ~~--------~aa~~a~~~~~~~l~~~g  257 (275)
T d1s2wa_         238 NL--------RASVSAIQQTTKQIYDDQ  257 (275)
T ss_dssp             HH--------HHHHHHHHHHHHHHHHHS
T ss_pred             HH--------HHHHHHHHHHHHHHHHcC
Confidence            44        566788888888887644

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=92.63  E-value=1.7  Score=39.86  Aligned_cols=200  Identities=17%  Similarity=0.204  Sum_probs=111.4

Q ss_pred             cEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh----c---cCCcee
Q 012949          127 VKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD----L---EGARLP  198 (452)
Q Consensus       127 V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~----~---~~~~l~  198 (452)
                      +-|+-.|+ |-..--+..++.+..++-++.|.+.|.+.|++|--+ .|..-+  -+.++.++++..    +   .+..++
T Consensus        22 MGIlNiTp-DSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~--is~~eE~~rl~p~i~~~~~~~~~~iS   98 (273)
T d1tx2a_          22 MGILNVTP-DSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK--VSVEEEIKRVVPMIQAVSKEVKLPIS   98 (273)
T ss_dssp             EEECCCCC-CTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCC--CCHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred             EEEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEeeceeccccccc--cCHHHHHHhhchhHHhhhccceEEEe
Confidence            44666665 555544445788999999999999999999999643 333222  245555555542    1   222232


Q ss_pred             EEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHH
Q 012949          199 VLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAA  277 (452)
Q Consensus       199 ~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~A  277 (452)
                      +=+.                          ..+-+++|+++|++.|.=..+. .|.                  ++.+.+
T Consensus        99 IDT~--------------------------~~~Va~~al~~G~~iINDvsg~~~D~------------------~m~~~~  134 (273)
T d1tx2a_          99 IDTY--------------------------KAEVAKQAIEAGAHIINDIWGAKAEP------------------KIAEVA  134 (273)
T ss_dssp             EECS--------------------------CHHHHHHHHHHTCCEEEETTTTSSCT------------------HHHHHH
T ss_pred             hHHh--------------------------hHHHHHHHHHcCCeEEeccccccchh------------------HHHHHH
Confidence            2111                          1236688999999988854432 231                  233455


Q ss_pred             HhCCCcEEEEEEeeecCCCCCCC---CHHHHHHHHHHHHHCCcC--EEEEcCCcCCC-cHHHHHHHHHHHHHh----CCC
Q 012949          278 KVLSIPVRGYVSCVVGCPVEGAI---PPSKVAYVAKELHDMGCF--EISLGDTIGVG-TPGTVVPMLEAVMAV----VPV  347 (452)
Q Consensus       278 k~~G~~V~~~l~~~~g~p~~~r~---d~e~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~li~~l~~~----~p~  347 (452)
                      ++.+..+.  +|+.-+.|.....   -..++.+-.+.+.++|++  .|.+-=-.|.. ++.+-.++++.+..-    +|.
T Consensus       135 ~~~~~~~v--lmH~~~~~~~~~~~~~~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~~~g~Pi  212 (273)
T d1tx2a_         135 AHYDVPII--LMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV  212 (273)
T ss_dssp             HHHTCCEE--EECCCSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB
T ss_pred             Hhhccccc--ccccccccccccccchhhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHHHHHhhhcccccCCCcE
Confidence            55666654  5553322221110   113455567788889984  46663334443 456666676666432    242


Q ss_pred             ccEE------------EEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          348 EKLA------------VHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       348 ~~l~------------vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                       -++            ...++...-.+|.+..|+..||++|
T Consensus       213 -lvG~SRKsfig~~~~~~~~eRl~~Tla~~~~a~~~Ga~il  252 (273)
T d1tx2a_         213 -LLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFV  252 (273)
T ss_dssp             -EEECTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEE
T ss_pred             -EEEehHHHHHHHHhCCCHHHhhHHHHHHHHHHHHCCCCEE
Confidence             111            1234444444666777888888866

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.54  E-value=0.031  Score=50.41  Aligned_cols=164  Identities=15%  Similarity=0.134  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhccCCceeE--Eecchhhhhhhhhhhhhccchhhh
Q 012949          150 KVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPV--LTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       150 k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~--l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      -.+-++.|.+.|++.|-+    |.|+     |.+.-..+.++.+++.++..+-+  ++-+-.                  
T Consensus        16 l~~~i~~~~~~g~d~iHiDimDg~Fv-----pn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~------------------   72 (217)
T d2flia1          16 FASELARIEETDAEYVHIDIMDGQFV-----PNISFGADVVASMRKHSKLVFDCHLMVVDPE------------------   72 (217)
T ss_dssp             HHHHHHHHHHTTCCEEEEEEEBSSSS-----SCBCBCHHHHHHHHTTCCSEEEEEEESSSGG------------------
T ss_pred             HHHHHHHHHHcCCCEEEEEcccCcCC-----CccccCHHHHHHHHhcCCCceEeEEEecCHH------------------
Confidence            345567888999998777    4444     33332235567777766655544  222111                  


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                             +.++..+++|++.|.+-.-..                +...+.++++++.|.++...+.     |.   ++++
T Consensus        73 -------~~i~~~~~~ga~~i~~H~E~~----------------~~~~~~i~~i~~~g~~~Gial~-----p~---T~~~  121 (217)
T d2flia1          73 -------RYVEAFAQAGADIMTIHTEST----------------RHIHGALQKIKAAGMKAGVVIN-----PG---TPAT  121 (217)
T ss_dssp             -------GGHHHHHHHTCSEEEEEGGGC----------------SCHHHHHHHHHHTTSEEEEEEC-----TT---SCGG
T ss_pred             -------HHHHHHHHcCCcEEEeccccc----------------cCHHHHHHHHHhcCCeEEEEec-----CC---cchh
Confidence                   267888899999888765322                2235667899999998875443     32   3455


Q ss_pred             HHHHHHHHHHHCCcCEE-EEcCCcCCC---cHH----HHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          304 KVAYVAKELHDMGCFEI-SLGDTIGVG---TPG----TVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I-~L~DT~G~~---~P~----~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      .+..+..     -+|.| .++=..|..   .-.    ++.++-+.+.++.+...|.+    |=|.-.-|+-...++||+.
T Consensus       122 ~~~~~l~-----~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~v----DGGIn~~~i~~l~~aGad~  192 (217)
T d2flia1         122 ALEPLLD-----LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV----DGGVDNKTIRACYEAGANV  192 (217)
T ss_dssp             GGGGGTT-----TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE----ESSCCTTTHHHHHHHTCCE
T ss_pred             HHHhHHh-----hcCEEEEEEEcCcccccccchhhHHHHHHHHHHHHhcCCCeEEEE----eCCCCHHHHHHHHHCCCCE
Confidence            5544443     24432 333233332   223    34444344334445545555    4555566888888999997


Q ss_pred             E
Q 012949          376 V  376 (452)
Q Consensus       376 V  376 (452)
                      +
T Consensus       193 ~  193 (217)
T d2flia1         193 F  193 (217)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=92.52  E-value=0.48  Score=40.73  Aligned_cols=145  Identities=20%  Similarity=0.254  Sum_probs=90.3

Q ss_pred             hhhHHHHHhhhcCCCCccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHH
Q 012949          110 KDIRDITNKFLKGIPRFVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAV  189 (452)
Q Consensus       110 ~~~~~~~~~~~~~~p~~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i  189 (452)
                      ...|+.+..+...-.++++|+=.|+-.=.+      + --+.-++..|.+.|++++-.|.+++|         ++     
T Consensus        21 e~lr~~~~~~~~~~gr~pkVlla~~g~D~H------d-~G~~~va~~l~~~G~eVi~lg~~~~~---------e~-----   79 (168)
T d7reqa2          21 EEARELVEEFEQAEGRRPRILLAKMGQDGH------D-RGQKVIATAYADLGFDVDVGPLFQTP---------EE-----   79 (168)
T ss_dssp             HHHHHHHHHHHHHHSSCCEEEEECBTTCCC------C-HHHHHHHHHHHHTTCEEEECCTTBCH---------HH-----
T ss_pred             HHHHHHHHHHHHhhCCCCeEEEEeCCccHH------H-HHHHHHHHHHHhCCcceecCCCcCcH---------HH-----
Confidence            344555555554445556676666642222      2 23356678999999988888765432         22     


Q ss_pred             HhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHH
Q 012949          190 RDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVR  269 (452)
Q Consensus       190 ~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~  269 (452)
                                                                -++.+.+.++|.|.+......             .++.
T Consensus        80 ------------------------------------------iv~aa~~~~advI~iSs~~~~-------------~~~~  104 (168)
T d7reqa2          80 ------------------------------------------TARQAVEADVHVVGVSSLAGG-------------HLTL  104 (168)
T ss_dssp             ------------------------------------------HHHHHHHHTCSEEEEEECSSC-------------HHHH
T ss_pred             ------------------------------------------HHHHHHccCCCEEEEecCccc-------------chHH
Confidence                                                      345666778888888754332             3577


Q ss_pred             HHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC
Q 012949          270 YRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~  345 (452)
                      +.++++..|+.|.. +.+.    .|    +..+++..    +.+.++|++.|+=+.|   ..++.+.++++.+++++
T Consensus       105 ~~~l~~~L~~~g~~~v~Vi----vG----G~ip~~d~----~~l~~~Gv~~iF~pgt---~~~e~a~~~~~~~~~~~  166 (168)
T d7reqa2         105 VPALRKELDKLGRPDILIT----VG----GVIPEQDF----DELRKDGAVEIYTPGT---VIPESAISLVKKLRASL  166 (168)
T ss_dssp             HHHHHHHHHHTTCTTSEEE----EE----ESCCGGGH----HHHHHHTEEEEECTTC---CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCeEEE----Ee----CCCCHHHH----HHHHhCCCCEEECcCC---CHHHHHHHHHHHHHHHh
Confidence            78888999998853 3321    11    23333332    4466789998875554   35677888888888763

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.13  E-value=0.67  Score=41.66  Aligned_cols=140  Identities=17%  Similarity=0.152  Sum_probs=87.4

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      ..+.|.+.|+.-|-++    +.|            +       +.|++..-.|.  ++.+.|+|... .+.+.-..-++.
T Consensus        25 lc~~A~~~~~~aVcV~----P~~------------v-------~~a~~~l~~vk--v~tVigFP~G~-~~~~~K~~E~~~   78 (225)
T d1mzha_          25 FVLKSEELGIYAVCVN----PYH------------V-------KLASSIAKKVK--VCCVIGFPLGL-NKTSVKVKEAVE   78 (225)
T ss_dssp             HHHHHHHTTCSEEEEC----GGG------------H-------HHHHHHCSSSE--EEEEESTTTCC-SCHHHHHHHHHH
T ss_pred             HHHHHHHhCCcEEEEC----HHH------------H-------HHHHhhccCCc--eEEEeccCCCC-CcHHHHHHHHHH
Confidence            5677888898876664    211            1       22333222232  45567788754 566666667778


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc----cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE----KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~----~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.||+.|-+.=-.|.+   .-+.+.+-++.+++..++.    .|+...-++.. -...+..|+++||+.|=+|-+ .+
T Consensus        79 Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e-i~~a~~~a~~aGadfiKTSTG-~~  156 (225)
T d1mzha_          79 AVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEE-IKKAVEICIEAGADFIKTSTG-FA  156 (225)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHH-HHHHHHHHHHHTCSEEECCCS-CS
T ss_pred             HHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHH-HHHHHHHHHHcccceEeecCC-CC
Confidence            888999999776554543   2345666677777766542    23444444443 345677889999999998765 32


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHc
Q 012949          385 GCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~~  407 (452)
                              ++.+..|++-.+.+.
T Consensus       157 --------~~gat~e~v~~m~~~  171 (225)
T d1mzha_         157 --------PRGTTLEEVRLIKSS  171 (225)
T ss_dssp             --------SSCCCHHHHHHHHHH
T ss_pred             --------CCCCCHHHHHHHHHH
Confidence                    345777887666653

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=91.45  E-value=1.7  Score=39.33  Aligned_cols=106  Identities=14%  Similarity=0.181  Sum_probs=73.8

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|.+.-+.+|.+     ..|.+|-.+.++.+++.++. ..++.+.+         +..+.+...++++
T Consensus        28 ~~i~~l~~~Gv~gl~~~G~tGE~~-----~Ls~~Er~~l~~~~~~~~~~-~~~vi~gv---------~~~s~~~~i~~a~   92 (292)
T d1xkya1          28 KLVNYLIDNGTTAIVVGGTTGESP-----TLTSEEKVALYRHVVSVVDK-RVPVIAGT---------GSNNTHASIDLTK   92 (292)
T ss_dssp             HHHHHHHHTTCCEEEESSTTTTGG-----GSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEECeEccchh-----hCCHHHHHHHHHHHHHHhCC-CceEEEec---------CcccHHHHHHHHH
Confidence            477888899999999988888863     46778777766666665433 44544211         2345678888999


Q ss_pred             HHHHCCcCEEEEcC-CcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          311 ELHDMGCFEISLGD-TIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       311 ~l~~~Gad~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .+.++|+|.|.+.= ..-..+..++.+.++.+.+..| .+|-+
T Consensus        93 ~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~-~pi~i  134 (292)
T d1xkya1          93 KATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP-LPVML  134 (292)
T ss_dssp             HHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS-SCEEE
T ss_pred             HHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCC-CcEEE
Confidence            99999999776642 2333567888888888888776 35544

>d1bxba_ c.1.15.3 (A:) D-xylose isomerase {Thermus aquaticus, subsp. Thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Thermus aquaticus, subsp. Thermophilus [TaxId: 271]

Probab=91.44  E-value=0.4  Score=46.57  Aligned_cols=201  Identities=15%  Similarity=0.095  Sum_probs=106.2

Q ss_pred             HHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHh---ccCCceeEEecchhhhhhhh-h-hhhhccchhhhh
Q 012949          151 VELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKVILQRS-I-LFQQCHASVISS  224 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~---~~~~~l~~l~~~~~~~i~r~-~-~~~~~~~~~i~~  224 (452)
                      .+.++.|.++|++.+++=- ...|. .....+.++..+.+++   -.++++.+.++++--. .+. . .++....++-+.
T Consensus        36 ~~~~~~~~~lg~~~~~fHd~d~~p~-~~~~~e~~~~~~~~k~~~~~~Gl~~~~~t~nlf~~-~~~~~Gs~t~pD~~vR~~  113 (387)
T d1bxba_          36 VYVVHKLAELGAYGVNLHDEDLIPR-GTPPQERDQIVRRFKKALDETGLKVPMVTANLFSD-PAFKDGAFTSPDPWVRAY  113 (387)
T ss_dssp             HHHHHHHHHHTCSEEEEEHHHHSCT-TCCTTHHHHHHHHHHHHHHHHTCBCCEEECCCSSS-GGGGGCSTTCSSHHHHHH
T ss_pred             HHHHHHHHhcCCCEEeecccccCCC-CCCHHHHHHHHHHHHHHhhccCCceeeeccccccc-hhhhcCcccCCCHHHHHH
Confidence            5677888999999998621 01121 1111233455566654   2577887777765200 000 0 123333332222


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecC--ChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCC--C
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASA--SEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGA--I  300 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~--Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r--~  300 (452)
                      +..-.++.++.+.+.|.+.+.++...  .+.-.+.....-.+...+.+.++++++++.|..++..|..-   |.+-+  .
T Consensus       114 Ai~~~k~~id~a~~LGa~~~vlW~G~dG~~~~~~~d~~~~~~~~~e~l~~v~~~a~~~g~~~~i~iEpk---P~EP~~~~  190 (387)
T d1bxba_         114 ALRKSLETMDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPK---PNEPRGDI  190 (387)
T ss_dssp             HHHHHHHHHHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCC---SSSSSSEE
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEcCCCCccCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeec---CCCCcccc
Confidence            22234567888888999988765542  12222233344456677777788889999887777556542   22211  1


Q ss_pred             CHHHHHHHHHHHHHCC-cCEEEE-cCCcCCCc-H-HHHHHHHHHHHHhCCCccEEEEeCCCcC
Q 012949          301 PPSKVAYVAKELHDMG-CFEISL-GDTIGVGT-P-GTVVPMLEAVMAVVPVEKLAVHLHDTYG  359 (452)
Q Consensus       301 d~e~l~~~a~~l~~~G-ad~I~L-~DT~G~~~-P-~~v~~li~~l~~~~p~~~l~vH~Hnd~G  359 (452)
                      -...+...+..+.+.| .+.+.+ .|+ |.++ + ......|..+... . .-.++|++++.+
T Consensus       191 ~~~~~~~~l~~~~~~g~~~~~gl~lD~-~H~~l~g~~~~~~v~~a~~~-g-kLg~vh~Nd~~~  250 (387)
T d1bxba_         191 YFATVGSMLAFIHTLDRPERFGLNPEF-AHETMAGLNFVHAVAQALDA-G-KLFHIDLNDQRM  250 (387)
T ss_dssp             SSCSHHHHHHHHTTSSSGGGEEECCBH-HHHHHTTCCHHHHHHHHHHT-T-CBCCEECCBCCS
T ss_pred             ccCCHHHHHHHHHHhCCchhEeecccc-chhhhcCCchHHHHHHHHHh-C-ceeceEcCCCCC
Confidence            1123445555667777 345544 464 3332 2 2334444444442 1 235788887764

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=91.35  E-value=1.3  Score=40.94  Aligned_cols=218  Identities=16%  Similarity=0.112  Sum_probs=124.6

Q ss_pred             HHHHHHCCCCEEEEecC-C--CCCcccc--cCCHHHHHHHHHhccC-CceeEEecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          154 IRRLVSSGLPVVEATSF-V--SPKWVPQ--LADARDVMEAVRDLEG-ARLPVLTPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~-~--s~~~~p~--~~D~e~v~~~i~~~~~-~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      ++...++|++.+=++++ +  +...+|-  +-..+++++.++++.+ +.+++++..-       .||+..+.++.+    
T Consensus        29 A~~~e~~Gf~a~~~sg~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d-------~GyG~~~~~v~~----   97 (289)
T d1muma_          29 ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDAD-------IGFGSSAFNVAR----   97 (289)
T ss_dssp             HHHHHHTTCSCEEECHHHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECT-------TCSSSSHHHHHH----
T ss_pred             HHHHHHcCCCEEEhhHHHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeeccc-------ccccccchHHHH----
Confidence            45778899999988643 1  1222342  2356788888877643 4555555322       245554444443    


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC-CCCHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEA---FSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG-AIPPS  303 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~---~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~-r~d~e  303 (452)
                          .++...++|+.-|+|-+...+-   |...+.=.+.++.+.+++.+++..+.-.+-+.   ..+    |+- ....+
T Consensus        98 ----~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~Ii---ART----Da~~~~g~~  166 (289)
T d1muma_          98 ----TVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIM---ART----DALAVEGLD  166 (289)
T ss_dssp             ----HHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEE---EEE----CCHHHHCHH
T ss_pred             ----HHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhhe---ecc----ccccccCHH
Confidence                7788899999999999876542   22222224688888888665543332233222   111    110 11245


Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGL  383 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~Gl  383 (452)
                      ...+=++...++|||.|.+.   |.-+++++.++.+.+    +. |+-+..=......+-+.-.--+.|+++|-.....+
T Consensus       167 eAi~R~~aY~eAGAD~vf~~---~~~~~~~~~~~~~~~----~~-Pl~~~~~~~~~~p~~s~~eL~~~Gv~~v~~~~~~~  238 (289)
T d1muma_         167 AAIERAQAYVEAGAEMLFPE---AITELAMYRQFADAV----QV-PILANITEFGATPLFTTDELRSAHVAMALYPLSAF  238 (289)
T ss_dssp             HHHHHHHHHHHTTCSEEEET---TCCCHHHHHHHHHHH----CS-CBEEECCSSSSSCCCCHHHHHHTTCSEEEESSHHH
T ss_pred             HHHHHHHHhhhcCCcEEEec---CCCCHHHHHHHHHhc----CC-CEEEeecCcCCCccchHHHHHHhccceEEechHHH
Confidence            55666677889999999874   455677666655544    32 33221111111111134466689999876655433


Q ss_pred             CCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          384 GGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       384 GecP~a~graGNaalE~vv~~L~~~G  409 (452)
                              ++-..++++++..|+..|
T Consensus       239 --------~aa~~a~~~~~~~l~~~G  256 (289)
T d1muma_         239 --------RAMNRAAEHVYNVLRQEG  256 (289)
T ss_dssp             --------HHHHHHHHHHHHHHHHHS
T ss_pred             --------HHHHHHHHHHHHHHHHcC
Confidence                    455667777777777544

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.22  E-value=1.5  Score=39.96  Aligned_cols=106  Identities=13%  Similarity=0.105  Sum_probs=72.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|.+.-+.+|.     +..|.+|-.+.++.+++.++.. .++.+      |   .+..+.+...++++
T Consensus        32 ~~i~~li~~Gv~Gi~v~G~tGE~-----~~Ls~eEr~~l~~~~~~~~~~~-~~vi~------g---~~~~s~~~~i~~a~   96 (296)
T d1xxxa1          32 RLANHLVDQGCDGLVVSGTTGES-----PTTTDGEKIELLRAVLEAVGDR-ARVIA------G---AGTYDTAHSIRLAK   96 (296)
T ss_dssp             HHHHHHHHTTCSEEEESSTTTTT-----TTSCHHHHHHHHHHHHHHHTTT-SEEEE------E---CCCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECeeccch-----hhCCHHHHHHHHHHHHHHhccc-cceEe------c---cccchhHHHHHHHH
Confidence            47788889999999988888875     4567888777666666655332 33321      1   12346788888999


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .+.++|+|.+.+ +=.....+.+.+.+.++.+.+..+ ++|-+
T Consensus        97 ~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~-~pi~l  138 (296)
T d1xxxa1          97 ACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATE-LPMLL  138 (296)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEE
T ss_pred             HHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence            999999996654 234445577888888888877654 34444

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=91.20  E-value=0.86  Score=44.59  Aligned_cols=107  Identities=13%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIP-VRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~-V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++...+.|+.+|.+-+..=+-.....+|+.  ...+.+.++++.+|+.|+. |.+.|+  +|.|-.   +.+.+.+-+
T Consensus       151 ~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~--~~~~~~~~~~~~~r~~g~~~vn~DLI--~GlPgq---T~~~~~~tl  223 (441)
T d1olta_         151 DVLDHLRAEGFNRLSMGVQDFNKEVQRLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAFTL  223 (441)
T ss_dssp             HHHHHHHHTTCCEEEEEEECCCHHHHHHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHHHH
T ss_pred             HHHHHHHHhCCceEEecchhcchhhhhhhhcC--CCHHHHHHHHHHHHhcccceeecccc--cccCCc---chHHHHHHH
Confidence            57788889999999998744443444444443  2344556788999999986 777777  566755   478888889


Q ss_pred             HHHHHCCcCEEEEcC------C---------cCCCcHHHHHHHHHHHHHh
Q 012949          310 KELHDMGCFEISLGD------T---------IGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       310 ~~l~~~Gad~I~L~D------T---------~G~~~P~~v~~li~~l~~~  344 (452)
                      +.+.++++++|.+-.      +         ...-.+++..++.....+.
T Consensus       224 ~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~  273 (441)
T d1olta_         224 KRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF  273 (441)
T ss_dssp             HHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHH
Confidence            999999999998732      1         1223456666666655554

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.05  E-value=3.2  Score=38.09  Aligned_cols=123  Identities=11%  Similarity=0.085  Sum_probs=82.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.|++.+-|.-  ++.              .. .++++++.+.+.+|.  ++       .+..+.+.+.+..+
T Consensus       112 ~s~~~l~~l~~~~iKIaS--~d~--------------~n-~~Li~~i~k~~kpvi--is-------tG~~~~~ei~~~~~  165 (295)
T d1vlia2         112 GSADLLQSTSPSAFKIAS--YEI--------------NH-LPLLKYVARLNRPMI--FS-------TAGAEISDVHEAWR  165 (295)
T ss_dssp             HHHHHHHTTCCSCEEECG--GGT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHHHHHH
T ss_pred             eeeeeecccCcceeEecc--ccc--------------cc-HHHHHHHHhcCCchh--ee-------chhhhhhhHHHHHh
Confidence            467777888888877653  232              11 256678888898876  33       24466788888888


Q ss_pred             HHHHCCc-CEEEEcCCcCCCcHHHH--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949          311 ELHDMGC-FEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       311 ~l~~~Ga-d~I~L~DT~G~~~P~~v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      .+...+- +.+-+-=+..+=+|..=  -..+..+++.++..++++--|-..|..  -+++|+.+||++|  +.|+.
T Consensus       166 ~~~~~~~~~i~llhc~s~YPt~~~~~nL~~i~~l~k~~~~~~vG~SdHs~~~~~--~~~~A~~~Ga~~IEkH~tl~  239 (295)
T d1vlia2         166 TIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTE--APCAAVRLGAKLIEKHFTID  239 (295)
T ss_dssp             HHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCSSSSH--HHHHHHHTTCSEEEEEBCSC
T ss_pred             HhhhcccccEEEEeecccccccchhhhhhhhhhhhhhccccceeeecccccccc--chhhhhccCcceeeEEEEec
Confidence            8877665 45555455555554332  223677888888878898888665654  4667888999988  56655

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.89  E-value=2.1  Score=40.01  Aligned_cols=140  Identities=16%  Similarity=0.068  Sum_probs=85.4

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHH--hhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFS--KSNINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~--~~~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~  297 (452)
                      +..++|.++|.|.|.|-..        .|+..+  .-.+|-|.|+=++.+.++++..|+. |  +.|..-++..-  ...
T Consensus       145 ~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d--~~~  222 (330)
T d1ps9a1         145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD--LVE  222 (330)
T ss_dssp             HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC--CST
T ss_pred             HHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccc--ccc
Confidence            4556788899999999654        233332  2336778888888888888887763 3  44444444321  122


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcC--------CcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGD--------TIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILIS  368 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~D--------T~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaA  368 (452)
                      +-.+.+...++++.+.++|++.+.+.-        ....-.| .....+.+.+|+.+. +++..-..-   .-...+..+
T Consensus       223 ~g~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~G~i---~~~~~ae~~  298 (330)
T d1ps9a1         223 DGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS-LPLVTTNRI---NDPQVADDI  298 (330)
T ss_dssp             TCCCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS-SCEEECSSC---CSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCC-ceEEEeCCC---CCHHHHHHH
Confidence            345789999999999999999877521        1111112 223455666766654 355443321   124556778


Q ss_pred             HHcC-CCEE
Q 012949          369 LQMG-ISTV  376 (452)
Q Consensus       369 l~aG-a~~V  376 (452)
                      |+.| ||.|
T Consensus       299 l~~g~~D~V  307 (330)
T d1ps9a1         299 LSRGDADMV  307 (330)
T ss_dssp             HHTTSCSEE
T ss_pred             HHCCCcchh
Confidence            8888 7755

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.59  E-value=0.74  Score=42.06  Aligned_cols=155  Identities=14%  Similarity=0.041  Sum_probs=101.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC-CCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV-EGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~-~~r~d~e~l~~~a  309 (452)
                      +|+-.....-+|.+-+....+-++-        +   +-+++-++.+|++|+.|.      +|... +..+....+.++.
T Consensus        29 eD~Le~ag~yID~~K~g~Gt~~l~p--------~---~~l~eKI~l~~~~~V~v~------~GGtlfE~a~~qg~~~~y~   91 (251)
T d1qwga_          29 EDYLKVCGDYIDFVKFGWGTSAVID--------R---DVVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFL   91 (251)
T ss_dssp             HHHHHHHGGGCSEEEECTTGGGGSC--------H---HHHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhhhheeEEEecCceeeecC--------H---HHHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCCHHHHH
Confidence            4555566678999999877665532        2   234677899999999875      22100 0001112355678


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh-CCCccEEEEeCC---CcCcH----HHHHHHHHHcCCCEE--eec
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV-VPVEKLAVHLHD---TYGQS----LPNILISLQMGISTV--DCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~-~p~~~l~vH~Hn---d~GlA----~ANaLaAl~aGa~~V--D~S  379 (452)
                      +.+.+.|.+.|-+.|...-+..++-.++|+.+++. +. +.-++|..+   +.-+.    +-.+...++|||+.|  ++-
T Consensus        92 ~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~-V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEar  170 (251)
T d1qwga_          92 NECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFM-VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGR  170 (251)
T ss_dssp             HHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCT
T ss_pred             HHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCE-EeecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehh
Confidence            88888999999999999999999999999999885 32 234555442   12233    334667799999955  543


Q ss_pred             c----cCCCCCCCCCCCCCcccHHHHHHHHHcCC
Q 012949          380 V----AGLGGCPYAKGASGNVATEDVVYMLSGLG  409 (452)
Q Consensus       380 v----~GlGecP~a~graGNaalE~vv~~L~~~G  409 (452)
                      =    -|+=+      ..|+.....+-..++.++
T Consensus       171 Esg~~~Gi~~------~~g~~r~~~i~~i~~~l~  198 (251)
T d1qwga_         171 ESGKGKGLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             hcCCccceec------CCCChhHHHHHHHHHhCC
Confidence            2    24445      678888666655554443

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=90.26  E-value=0.76  Score=40.84  Aligned_cols=142  Identities=18%  Similarity=0.161  Sum_probs=92.8

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      ..+.|.+.|+.-|-++-    .|            ++.++   +..+..++.+    +.+.|+|... .+.+.-..-++.
T Consensus        23 lc~~A~~~~~~aVcV~P----~~------------v~~a~---~~l~~s~v~v----~~VigFP~G~-~~~~~k~~e~~~   78 (211)
T d1ub3a_          23 AAEEALEYGFYGLCIPP----SY------------VAWVR---ARYPHAPFRL----VTVVGFPLGY-QEKEVKALEAAL   78 (211)
T ss_dssp             HHHHHHHHTCSEEECCG----GG------------HHHHH---HHCTTCSSEE----EEEESTTTCC-SCHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEECH----HH------------HHHHH---HHccCCCCce----EEEEeccccc-CcHHHHHHHHHH
Confidence            45677778887655442    11            22221   2223334443    4456778654 456666667788


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc----cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE----KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~----~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.||+.|-+.=-.|.+   .-+.+++-++.+++..++.    .|+.+.-++--.. ..+..|+++|+++|=+|- |.+
T Consensus        79 ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei~-~a~~~a~~aGadfiKTST-G~~  156 (211)
T d1ub3a_          79 ACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEIA-RLAEAAIRGGADFLKTST-GFG  156 (211)
T ss_dssp             HHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHHH-HHHHHHHHHTCSEEECCC-SSS
T ss_pred             HHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHHH-HHHHHHHHhccceEEecC-CCC
Confidence            889999999887666654   4567788888888877643    3566777655544 455789999999999885 443


Q ss_pred             CCCCCCCCCCcccHHHHHHHHHc
Q 012949          385 GCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~~  407 (452)
                              .+.+..|++..+.+.
T Consensus       157 --------~~gat~e~v~~m~~~  171 (211)
T d1ub3a_         157 --------PRGASLEDVALLVRV  171 (211)
T ss_dssp             --------SCCCCHHHHHHHHHH
T ss_pred             --------CCCCCHHHHHHHHHH
Confidence                    345778888777663

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=90.04  E-value=5.3  Score=36.25  Aligned_cols=147  Identities=15%  Similarity=0.120  Sum_probs=85.7

Q ss_pred             HHHHHHHHHCCCCEEEEecCC-----CCCcccccCCHHHHHHHHHh----ccCCceeEEecchhhhhhhhhhhhhccchh
Q 012949          151 VELIRRLVSSGLPVVEATSFV-----SPKWVPQLADARDVMEAVRD----LEGARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~-----s~~~~p~~~D~e~v~~~i~~----~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      -..+..++++|||.|-+|-..     ..+.... -+.++.+...+.    .++.-+.+=.|-.        .|....+..
T Consensus        25 ~~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~-vt~d~mi~h~~aV~rga~~~~~i~dmPf~--------sy~~~~~~~   95 (260)
T d1o66a_          25 SSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLP-VSLRDMCYHTECVARGAKNAMIVSDLPFG--------AYQQSKEQA   95 (260)
T ss_dssp             HHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTT-CCHHHHHHHHHHHHHHCSSSEEEEECCTT--------SSSSCHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCchheecCCCCccc-cchhhhhhhhHHHHccCcceeeecchhhh--------hhcchhHHH
Confidence            456889999999999998321     0000011 134555443332    2332222222311        122111111


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC----
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE----  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~----  297 (452)
                              .+......++|++.|.+--+..                  ..+.+++..+.|++|.+.|-..   |-.    
T Consensus        96 --------~~a~~~~~~~gadavk~eg~~~------------------~~~~i~~l~~~gIPV~gHiGl~---Pq~~~~~  146 (260)
T d1o66a_          96 --------FAAAAELMAAGAHMVKLEGGVW------------------MAETTEFLQMRGIPVCAHIGLT---PQSVFAF  146 (260)
T ss_dssp             --------HHHHHHHHHTTCSEEEEECSGG------------------GHHHHHHHHHTTCCEEEEEESC---GGGTTC-
T ss_pred             --------HHHHHHHHHhhhhhccccchhh------------------hhHHHHHHHHcCCeeEeecccc---cchheec
Confidence                    1233445678999999875421                  1356677888999999888653   211    


Q ss_pred             ------CC-CCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHH
Q 012949          298 ------GA-IPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEA  340 (452)
Q Consensus       298 ------~r-~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~  340 (452)
                            ++ .+...+.+.++.+.++||..|.|-     ..|.++.+.|..
T Consensus       147 gG~r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE-----~Vp~~va~~It~  191 (260)
T d1o66a_         147 GGYKVQGRGGKAQALLNDAKAHDDAGAAVVLME-----CVLAELAKKVTE  191 (260)
T ss_dssp             ----------CHHHHHHHHHHHHHTTCSEEEEE-----SCCHHHHHHHHH
T ss_pred             CcceeccccchhHHHHHHHHHHHHhhhhehhhh-----hccHHHHHHHHh
Confidence                  12 234568889999999999999985     478888887764

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.01  E-value=1.2  Score=40.52  Aligned_cols=141  Identities=22%  Similarity=0.153  Sum_probs=93.6

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      ..+.|.+.|+.-|-++-.    |            ++.++   +..+..++.|    +.+.|+|.. ..+.+.-..-++.
T Consensus        56 lc~~A~~~~~aaVcV~P~----~------------v~~a~---~~L~gs~v~v----~tVigFP~G-~~~~~~K~~Ea~~  111 (251)
T d1o0ya_          56 LCLEARENRFHGVCVNPC----Y------------VKLAR---EELEGTDVKV----VTVVGFPLG-ANETRTKAHEAIF  111 (251)
T ss_dssp             HHHHHHHHTCSEEEECGG----G------------HHHHH---HHHTTSCCEE----EEEESTTTC-CSCHHHHHHHHHH
T ss_pred             HHHHHhhcCceEEEECHH----H------------HHHHH---HHhcCCCceE----EeeccCCCC-CCcHHHHHHHHHH
Confidence            556788889887776531    1            22222   2334445544    445677875 4566666667788


Q ss_pred             HHHCCcCEEEEcCCcCCC---cHHHHHHHHHHHHHhCCCc----cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCC
Q 012949          312 LHDMGCFEISLGDTIGVG---TPGTVVPMLEAVMAVVPVE----KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLG  384 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~---~P~~v~~li~~l~~~~p~~----~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlG  384 (452)
                      +.+.||+.|-+.=-.|.+   .-+.+++-|+.+++..++.    .|+...-++..+- ..+..|+++||+.|=+|-+ .+
T Consensus       112 Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~-~a~~ia~~aGadfvKTSTG-f~  189 (251)
T d1o0ya_         112 AVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTG-FG  189 (251)
T ss_dssp             HHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECCCS-SS
T ss_pred             HHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHH-HHHHHHHHhCcceeeccCC-CC
Confidence            889999999887776763   5567788888888776542    3555666666665 4578889999999988765 32


Q ss_pred             CCCCCCCCCCcccHHHHHHHHH
Q 012949          385 GCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       385 ecP~a~graGNaalE~vv~~L~  406 (452)
                              +|.+..|++-.+.+
T Consensus       190 --------~~gat~e~V~~m~~  203 (251)
T d1o0ya_         190 --------TGGATAEDVHLMKW  203 (251)
T ss_dssp             --------SCCCCHHHHHHHHH
T ss_pred             --------CCCcCHHHHHHHHH
Confidence                    34577777766655

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.86  E-value=6.8  Score=35.44  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=90.1

Q ss_pred             EEEeCCccccCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEecCC-CCCcccccCCHHHHHHHHHh----c--cCCceeEE
Q 012949          128 KIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSSGLPVVEATSFV-SPKWVPQLADARDVMEAVRD----L--EGARLPVL  200 (452)
Q Consensus       128 ~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~IEvG~~~-s~~~~p~~~D~e~v~~~i~~----~--~~~~l~~l  200 (452)
                      -|+.+|+ |-..--+..++.+..++-++.|.+-|.+.|++|--+ .|..-+ . +.++.++++..    +  .+..+++ 
T Consensus         6 GIlN~Tp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~-i-s~~eE~~Rl~p~i~~~~~~~~~iSI-   81 (270)
T d1eyea_           6 GVLNVTD-DSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATR-V-DPAVETSRVIPVVKELAAQGITVSI-   81 (270)
T ss_dssp             EEEECSC-CTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC----------------HHHHHHHHHHHHHTTCCEEE-
T ss_pred             EEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEe-e-echhhcccccceeeeecccceeech-
Confidence            3555655 555554556899999999999999999999999643 232111 1 22333444432    1  2233332 


Q ss_pred             ecchhhhhhhhhhhhhccchhhhhhhhccHHhHHHHHHcCCCEEEEEecC-ChHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 012949          201 TPNLKVILQRSILFQQCHASVISSNLWVYLQGFEAAIAAGAKEVAIFASA-SEAFSKSNINCSIEDSLVRYRAVAHAAKV  279 (452)
Q Consensus       201 ~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~-Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~  279 (452)
                       ...                        ..+-.++|+++|++.|.=..+. .|.                  ++.+.+++
T Consensus        82 -DT~------------------------~~~Va~~al~~Ga~iINDvsg~~~d~------------------~m~~~~a~  118 (270)
T d1eyea_          82 -DTM------------------------RADVARAALQNGAQMVNDVSGGRADP------------------AMGPLLAE  118 (270)
T ss_dssp             -ECS------------------------CHHHHHHHHHTTCCEEEETTTTSSCT------------------THHHHHHH
T ss_pred             -Hhh------------------------hHHHHHHHHhcCCeEEEeccccccch------------------hHHhhhhh
Confidence             111                        1235688999999998844332 221                  22244555


Q ss_pred             CCCcEEEEEEeeecCCCCCC---C---CH-----HHHHHHHHHHHHCCcC--EEEEcCCcCC-CcHHHHHHHHHHHHH
Q 012949          280 LSIPVRGYVSCVVGCPVEGA---I---PP-----SKVAYVAKELHDMGCF--EISLGDTIGV-GTPGTVVPMLEAVMA  343 (452)
Q Consensus       280 ~G~~V~~~l~~~~g~p~~~r---~---d~-----e~l~~~a~~l~~~Gad--~I~L~DT~G~-~~P~~v~~li~~l~~  343 (452)
                      .+..+.  +|+.-|.|-...   .   +.     .++.+..+.+...|+.  .|.|==-.|. -++++-.++++.+.+
T Consensus       119 ~~~~~v--lmh~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~lL~~l~~  194 (270)
T d1eyea_         119 ADVPWV--LMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPE  194 (270)
T ss_dssp             HTCCEE--EECCCCSCTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHH
T ss_pred             ccccee--eeeccccccccccccccccchhhhhhhHHHHHHHHHHhccccceEEEEccccccCcccchHHHHHHHHHh
Confidence            566554  565444332211   0   11     2444556667778874  4666334444 366777788887755

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.78  E-value=0.53  Score=41.96  Aligned_cols=171  Identities=12%  Similarity=0.038  Sum_probs=99.9

Q ss_pred             HHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEE--ecchhhhhhhhhhhhhccchhhhhhhh
Q 012949          151 VELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVL--TPNLKVILQRSILFQQCHASVISSNLW  227 (452)
Q Consensus       151 ~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~~~~~  227 (452)
                      .+-++.|.+.|++.|-+-..- -.++|.+.=..+.++.+++. ++..+-+.  +-+-.                      
T Consensus        18 ~~~i~~l~~~~~d~iHiDimD-G~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~----------------------   74 (221)
T d1tqxa_          18 AEETQRMESLGAEWIHLDVMD-MHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPE----------------------   74 (221)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEB-SSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGG----------------------
T ss_pred             HHHHHHHHHcCCCEEEEECcc-CcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhh----------------------
Confidence            445678889999977664211 01234332223456667664 45555542  22111                      


Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHH
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAY  307 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~  307 (452)
                         +-++...++|.+.+++-....              ......+.++++|+.|..+...+.     |.   ++.+.+.+
T Consensus        75 ---~~i~~~~~~~~~~i~~~~~~~--------------~~~~~~~~i~~i~~~g~~~Gial~-----p~---t~~~~~~~  129 (221)
T d1tqxa_          75 ---KYVPLLKTSNQLTFHFEALNE--------------DTERCIQLAKEIRDNNLWCGISIK-----PK---TDVQKLVP  129 (221)
T ss_dssp             ---GGGGGCTTSSEEEEEGGGGTT--------------CHHHHHHHHHHHHTTTCEEEEEEC-----TT---SCGGGGHH
T ss_pred             ---hhhhhhhhcCceeEEeehhcc--------------ccchhhHHHHHHHhcCCeEEEeec-----cc---cccccchh
Confidence               123344556766555432221              134556778999999999875553     22   34455544


Q ss_pred             HHHHHHHCCcCEEEE-c---CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          308 VAKELHDMGCFEISL-G---DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L-~---DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      +.   ....+|.|-+ +   .-.|...=..+.+-|+.+|+..|...|++    |=|.-..|+-....+||+.+
T Consensus       130 ~l---~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~V----DGGIn~~~i~~l~~aGad~i  195 (221)
T d1tqxa_         130 IL---DTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHGANII  195 (221)
T ss_dssp             HH---TTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHTCCEE
T ss_pred             hc---ccccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEE----EcccCHHhHHHHHHcCCCEE
Confidence            33   1123665433 2   22333333567777888999888766665    88999999999999999976

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=89.39  E-value=6.5  Score=35.49  Aligned_cols=122  Identities=12%  Similarity=0.020  Sum_probs=82.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.+.+.|++.+-|.-.  +.              .. ..+++.+.+.+.+|.  |+       .|..+.+++.+..+
T Consensus       114 ~s~~~~~~~~~~~~KIaS~--d~--------------~n-~~Li~~i~k~~kpii--iS-------tG~s~~~EI~~av~  167 (280)
T d2zdra2         114 AAALRLQRMDIPAYKIGSG--EC--------------NN-YPLIKLVASFGKPII--LS-------TGMNSIESIKKSVE  167 (280)
T ss_dssp             HHHHHHHHHTCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHHHHHH
T ss_pred             hcccccccccccceeccch--hc--------------cc-cHhhhhhhhccCcee--ec-------ccccchhHhhhhhh
Confidence            3677788888887776532  22              11 245567777888876  44       24567888888888


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHH--HHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE--eeccc
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTV--VPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV--DCSVA  381 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v--~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V--D~Sv~  381 (452)
                      .+.+.+.+.+-+==+..+=+|..-  -..+..+++.+|...+++=-|.. |  ...+++|+..||++|  |.|+.
T Consensus       168 ~~~~~~~~~~llhc~s~YPt~~~~~nL~~i~~lk~~f~~~~iG~SdH~~-g--~~~~~~Ava~GA~~IEKH~tl~  239 (280)
T d2zdra2         168 IIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERHFTDR  239 (280)
T ss_dssp             HHHHHTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHTTCCEEEEEBCSC
T ss_pred             hhhhccccceEEEeeccCccccccccccccceeeccccccceeecCccc-c--hhhHHHHHHCCCeEEEEEEEeC
Confidence            888888876555334444444332  22388889999876789977753 3  567788999999999  66664

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=2.1  Score=38.82  Aligned_cols=102  Identities=18%  Similarity=0.096  Sum_probs=63.6

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|.+.-+.+|.+     ..|.+|-.+.++.+++.++. ..++.+.+         +..+.+...++++
T Consensus        27 ~~i~~l~~~Gv~gi~~~G~tGE~~-----~Ls~eEr~~l~~~~~~~~~~-~~pvi~gv---------~~~s~~~~i~~a~   91 (295)
T d1hl2a_          27 RLVQFNIQQGIDGLYVGGSTGEAF-----VQSLSEREQVLEIVAEEAKG-KIKLIAHV---------GCVSTAESQQLAA   91 (295)
T ss_dssp             HHHHHHHHHTCSEEEESSGGGTGG-----GSCHHHHHHHHHHHHHHHTT-TSEEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECeEccchh-----hCCHHHHHHHHhhhHHhhcc-ccceeecc---------ccchhhHHHHHHH
Confidence            467778888999988888777753     45677766555444444433 23333111         2335677777888


Q ss_pred             HHHHCCcCEEEEcCC-cCCCcHHHHHHHHHHHHHhCCC
Q 012949          311 ELHDMGCFEISLGDT-IGVGTPGTVVPMLEAVMAVVPV  347 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT-~G~~~P~~v~~li~~l~~~~p~  347 (452)
                      .+.++|++.+.+.=. .-..+++++.+.+..+.+..+.
T Consensus        92 ~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~  129 (295)
T d1hl2a_          92 SAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADG  129 (295)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCc
Confidence            888888886655433 2335667777776666665544

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.07  E-value=1.9  Score=39.23  Aligned_cols=100  Identities=17%  Similarity=0.202  Sum_probs=76.9

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC---CcHHHHHHHHHHHHHhCCC-ccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV---GTPGTVVPMLEAVMAVVPV-EKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~li~~l~~~~p~-~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|=   ++.++-.++++.+.+...+ +++-+|+ +++.--++..+..|.++|
T Consensus        23 g~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G  102 (296)
T d1xxxa1          23 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  102 (296)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhc
Confidence            4689999999999999999999999988874   5888888899988887643 5666665 667788889999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      ++.+-...--..          .+.-++++.+++.
T Consensus       103 ad~v~i~~P~~~----------~~~~~~l~~~~~~  127 (296)
T d1xxxa1         103 AHGLLVVTPYYS----------KPPQRGLQAHFTA  127 (296)
T ss_dssp             CSEEEEECCCSS----------CCCHHHHHHHHHH
T ss_pred             CCeEEEEeccCC----------CCCHHHHHHHHHH
Confidence            998855443222          1334566666653

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.48  E-value=0.49  Score=43.30  Aligned_cols=172  Identities=14%  Similarity=0.074  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISS  224 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~  224 (452)
                      ++...-..+++...+. ||.+=+|+..+.     +.+.+-+.+.++......+.+.. +-. +..  ..+.+-       
T Consensus        23 lgl~~leD~Le~ag~y-ID~~K~g~Gt~~-----l~p~~~l~eKI~l~~~~~V~v~~-GGt-lfE--~a~~qg-------   85 (251)
T d1qwga_          23 LPPKFVEDYLKVCGDY-IDFVKFGWGTSA-----VIDRDVVKEKINYYKDWGIKVYP-GGT-LFE--YAYSKG-------   85 (251)
T ss_dssp             CCHHHHHHHHHHHGGG-CSEEEECTTGGG-----GSCHHHHHHHHHHHHTTTCEEEE-CHH-HHH--HHHHTT-------
T ss_pred             CCHHHHHHHHHhhhhh-eeEEEecCceee-----ecCHHHHHHHHHHHHHcCCeEeC-CcH-HHH--HHHHcC-------
Confidence            5666666665555444 888889876432     12223344445432222222221 110 000  011111       


Q ss_pred             hhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC---CCCC
Q 012949          225 NLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE---GAIP  301 (452)
Q Consensus       225 ~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~---~r~d  301 (452)
                         ...+.++.+.+.|.+.|-|....-++        +    -+...++|+.|++.|++|..    .+|....   ...+
T Consensus        86 ---~~~~y~~~~~~lGf~~iEiSdg~~~i--------~----~~~~~~~I~~~~~~G~~V~~----EvG~K~~~~~~~~~  146 (251)
T d1qwga_          86 ---KFDEFLNECEKLGFEAVEISDGSSDI--------S----LEERNNAIKRAKDNGFMVLT----EVGKKMPDKDKQLT  146 (251)
T ss_dssp             ---CHHHHHHHHHHHTCCEEEECCSSSCC--------C----HHHHHHHHHHHHHTTCEEEE----EECCSSHHHHTTCC
T ss_pred             ---CHHHHHHHHHHcCCCEEEEcCCccCC--------C----HHHHHHHHHHHHhCCCEEee----cccCCCCCCccccC
Confidence               12357788999999999998755443        1    13345888999999998863    3443321   2467


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcC-----CcCCCcHHH--HHHHHHHHHHhCCCccEEE
Q 012949          302 PSKVAYVAKELHDMGCFEISLGD-----TIGVGTPGT--VVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~D-----T~G~~~P~~--v~~li~~l~~~~p~~~l~v  352 (452)
                      ++.+.+.++...++||+.|.+-=     ++|+..+..  -.+++..+.+.++..++-|
T Consensus       147 ~~~~i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~~~g~~r~~~i~~i~~~l~~~kiif  204 (251)
T d1qwga_         147 IDDRIKLINFDLDAGADYVIIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIF  204 (251)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEE
T ss_pred             HHHHHHHHHHHHHCCCceeEeehhhcCCccceecCCCChhHHHHHHHHHhCCcccEEE
Confidence            89999999999999999888731     456665532  1345666666676556666

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=0.55  Score=43.69  Aligned_cols=115  Identities=16%  Similarity=0.115  Sum_probs=81.7

Q ss_pred             HHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcC-CcCCCcHHHHHHHHHHHHHhCCCc
Q 012949          271 RAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGD-TIGVGTPGTVVPMLEAVMAVVPVE  348 (452)
Q Consensus       271 ~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~D-T~G~~~P~~v~~li~~l~~~~p~~  348 (452)
                      +++++.|++.|+-|-+     |.     -.+.+.+..+++.+.+.... .|.+.- +..++..+.+..++..+.+..+ +
T Consensus         6 k~ll~~A~~~~yAV~A-----fN-----v~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~-v   74 (284)
T d1gvfa_           6 KYLLQDAQANGYAVPA-----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-M   74 (284)
T ss_dssp             HHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHCCcEEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhCCHHHHHHHHHHHHHhcC-C
Confidence            5677899999987752     21     23568888888888888766 444432 2234456778888888888775 4


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHHc
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLSG  407 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~~  407 (452)
                      |+.+|.  |.|..+.....|+++|.+  ++|+|-..+-+         | .-|-+++.+.+.
T Consensus        75 pV~lHl--DH~~~~e~i~~ai~~GftSVMiD~S~lp~ee---------Ni~~t~~vv~~ah~  125 (284)
T d1gvfa_          75 PLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHS  125 (284)
T ss_dssp             CBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHHH---------HHHHHHHHHHHHHH
T ss_pred             eEEeee--ccccchHHHHHHHhcCCCeEEEECCCCCHHH---------HHHHHHHHHHHHHh
Confidence            778776  667789999999999998  78999776655         4 445566666653

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=88.06  E-value=4.6  Score=36.44  Aligned_cols=226  Identities=13%  Similarity=0.095  Sum_probs=121.4

Q ss_pred             HHHHHHCCCCEEEEecCCCC-CcccccCCHHHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhhhhhhhccHHh
Q 012949          154 IRRLVSSGLPVVEATSFVSP-KWVPQLADARDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVISSNLWVYLQG  232 (452)
Q Consensus       154 ~~~L~~~Gv~~IEvG~~~s~-~~~p~~~D~e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~~~~~~~~~~  232 (452)
                      +....+.|.++||+=+--.. ..-|.    ...++.+++..++.+-+|++.+..    -+.|....-+.       ..++
T Consensus        13 a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~iPv~vMIRPR~G----dF~Ys~~E~~~-------M~~d   77 (247)
T d1twda_          13 ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIPVHPIIRPRGG----DFCYSDGEFAA-------ILED   77 (247)
T ss_dssp             HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSCEEEBCCSSSS----CSCCCHHHHHH-------HHHH
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHhcCCCeEEEEecCCC----CCCCCHHHHHH-------HHHH
Confidence            44567899999999532110 11122    234555555456667777755431    13344433333       3469


Q ss_pred             HHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHH
Q 012949          233 FEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKEL  312 (452)
Q Consensus       233 ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l  312 (452)
                      ++.+++.|++.|.+-+-.+|-..      +    .+.+.++++.|+  ++++.  +=.+|   |.. .   ...+..+.+
T Consensus        78 i~~~k~~G~dGvV~G~L~~dg~i------D----~~~~~~L~~~a~--~l~vT--FHRAf---D~~-~---d~~~al~~L  136 (247)
T d1twda_          78 VRTVRELGFPGLVTGVLDVDGNV------D----MPRMEKIMAAAG--PLAVT--FHRAF---DMC-A---NPLYTLNNL  136 (247)
T ss_dssp             HHHHHHTTCSEEEECCBCTTSSB------C----HHHHHHHHHHHT--TSEEE--ECGGG---GGC-S---CHHHHHHHH
T ss_pred             HHHHHHcCCCeEEEEEECCCCCc------c----HHHHHHHHHHhc--ccCee--eehhh---hhh-C---CHHHHHHHH
Confidence            99999999999888654333211      1    355667777776  55554  22223   222 1   233455778


Q ss_pred             HHCCcCEEEEcCCcC-CCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCCCCC
Q 012949          313 HDMGCFEISLGDTIG-VGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPYAKG  391 (452)
Q Consensus       313 ~~~Gad~I~L~DT~G-~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~a~g  391 (452)
                      .+.|+++|-=   .| ..+-.+-.++++.+.+......|-.=.    |.-..|.-.-+++|++.+|.|-...-.-|+-..
T Consensus       137 i~lG~~rILT---SGg~~~a~~G~~~L~~L~~~a~~~iIm~Gg----GI~~~Ni~~l~~~g~~e~H~sa~~~~~s~~~~~  209 (247)
T d1twda_         137 AELGIARVLT---SGQKSDALQGLSKIMELIAHRDAPIIMAGA----GVRAENLHHFLDAGVLEVHSSAGAWQASPMRYR  209 (247)
T ss_dssp             HHHTCCEEEE---CTTSSSTTTTHHHHHHHHTSSSCCEEEEES----SCCTTTHHHHHHHTCSEEEECCEEEECCCCCCC
T ss_pred             HhcCCCeEec---cCCCCchhHHHHHHHHHHHhcCCcEEEecC----CCCHHHHHHHHHcCCCEEEECCCCcCCCcceec
Confidence            8889998763   33 333344455666666654432222211    222334444457899999998765444232222


Q ss_pred             CCCcccHHHHHHHH----HcCCCCCCCChhhHHHHHHHHHHH
Q 012949          392 ASGNVATEDVVYML----SGLGVETNVDLRKLMLAGDFINKH  429 (452)
Q Consensus       392 raGNaalE~vv~~L----~~~Gi~t~iDl~~L~~la~~v~~~  429 (452)
                         |..   +-+..    ..+.+ ...|.+++.++-+.+.+.
T Consensus       210 ---~~~---~~~g~~~~~~e~~~-~~tD~~~V~~~~~~l~~~  244 (247)
T d1twda_         210 ---NQG---LSMSSDEHADEYSR-YIVDGAAVAEMKGIIERH  244 (247)
T ss_dssp             ---C----------------CCE-EEECHHHHHHHHHHHHHH
T ss_pred             ---CCC---cccCCCCCCCcccc-cccCHHHHHHHHHHHHHh
Confidence               222   11111    11222 247888888887777654

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=87.87  E-value=0.72  Score=41.12  Aligned_cols=188  Identities=15%  Similarity=0.114  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHCCCCEEEE----ecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhh
Q 012949          149 VKVELIRRLVSSGLPVVEA----TSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       149 ~k~~i~~~L~~~Gv~~IEv----G~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      .-.+-++.|.+.|++.+-+    |.|+.     .+.=..++++.++..++..+-+.  +-+-.                 
T Consensus        16 ~l~~~i~~l~~~g~d~iHiDImDG~Fvp-----n~t~~~~~~~~i~~~t~~~~dvHLMv~~P~-----------------   73 (221)
T d1tqja_          16 RLGEEIKAVDEAGADWIHVDVMDGRFVP-----NITIGPLIVDAIRPLTKKTLDVHLMIVEPE-----------------   73 (221)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEBSSSSS-----CBCBCHHHHHHHGGGCCSEEEEEEESSSGG-----------------
T ss_pred             HHHHHHHHHHHcCCCEEEEECccCCccC-----ccccCcHhHHhhhhccCcceeeeEEEeCHH-----------------
Confidence            3445677888999998777    66653     22212346777777666555442  22111                 


Q ss_pred             hhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCH
Q 012949          223 SSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPP  302 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~  302 (452)
                              +.++..+++|++.+.+..-...              -+.+.+.+++.|+.|..+...|.     |.   ++.
T Consensus        74 --------~~i~~~~~~g~~~i~~H~E~~~--------------~~~~~~~~~~i~~~g~~~Gial~-----p~---T~~  123 (221)
T d1tqja_          74 --------KYVEDFAKAGADIISVHVEHNA--------------SPHLHRTLCQIRELGKKAGAVLN-----PS---TPL  123 (221)
T ss_dssp             --------GTHHHHHHHTCSEEEEECSTTT--------------CTTHHHHHHHHHHTTCEEEEEEC-----TT---CCG
T ss_pred             --------HHHHHHhhccceEEEEeecccc--------------ChhhHHHHHHHHHCCCCEEEEec-----CC---CcH
Confidence                    2677888999999988763211              12245677888999998875543     32   345


Q ss_pred             HHHHHHHHHHHHCCcCEEEEc----CCcCCCcH----HHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          303 SKVAYVAKELHDMGCFEISLG----DTIGVGTP----GTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~----DT~G~~~P----~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      +.+..++.     -+|.|.+-    .-.|...-    +.+.++.+.+.++-++..|.+    |=|.-.-|+-...++||+
T Consensus       124 ~~l~~~l~-----~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~V----DGGIn~~~i~~l~~~Gad  194 (221)
T d1tqja_         124 DFLEYVLP-----VCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGAN  194 (221)
T ss_dssp             GGGTTTGG-----GCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCC
T ss_pred             HHHHHHHh-----hhcEEEEEEecCCCCCcccchhhHHHHHHHHhhhhccccceEEEE----ECCcCHHHHHHHHHcCCC
Confidence            55555543     24555441    11222222    445555555555555556666    678877888999999999


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      .+=+   | +.      =-++...++.+..|+.
T Consensus       195 ~~V~---G-S~------if~~~d~~~~i~~lr~  217 (221)
T d1tqja_         195 AIVA---G-SA------VFNAPNYAEAIAGVRN  217 (221)
T ss_dssp             EEEE---S-HH------HHTSSCHHHHHHHHHT
T ss_pred             EEEE---C-hH------HhCCCCHHHHHHHHHh
Confidence            7632   2 11      1123456666666664

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.75  Score=41.77  Aligned_cols=97  Identities=20%  Similarity=0.318  Sum_probs=63.3

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++.|.+.|+|.|-+++.   .+.........++.++++.+++++|+++|+.|.+      |   + -.+.+.+..+++
T Consensus       138 ~~i~~a~~lGad~IElhTG---~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~VnA------G---H-gLn~~Nl~~i~~  204 (242)
T d1m5wa_         138 EQIKAAAEVGAPFIEIHTG---CYADAKTDAEQAQELARIAKAATFAASLGLKVNA------G---H-GLTYHNVKAIAA  204 (242)
T ss_dssp             HHHHHHHHTTCSEEEEECH---HHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE------E---S-SCCTTTHHHHHT
T ss_pred             hhHHHHhhcCcceeeeecc---cccccccchhhHHHHHHHHHHHHHHHhcCCcccC------C---C-CcCccchHHHhc
Confidence            3899999999999999975   2222211222446688999999999999999872      1   2 233444443321


Q ss_pred             HHHHCCcCEEEE-----cCCcCCCcHHHHHHHHHHHHH
Q 012949          311 ELHDMGCFEISL-----GDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       311 ~l~~~Gad~I~L-----~DT~G~~~P~~v~~li~~l~~  343 (452)
                       +  -+.+.++|     +|+.=++....|.++.+.+++
T Consensus       205 -i--p~i~EvsIGHaiI~eal~~Gl~~aV~~~~~ii~~  239 (242)
T d1m5wa_         205 -I--PEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE  239 (242)
T ss_dssp             -C--TTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             -C--CCCeEEeccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             1  13566665     566666677777777666654

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=3.2  Score=37.45  Aligned_cols=100  Identities=12%  Similarity=0.117  Sum_probs=56.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.+.+.-+.+|.     ...|.+|-.+.++.+++.++. ..++.+.+         +..+.+...++++
T Consensus        26 ~~i~~l~~~Gv~Gl~~~GstGE~-----~~Ls~~Er~~~~~~~~~~~~~-~~~vi~g~---------~~~s~~~~i~~~~   90 (292)
T d2a6na1          26 KLIDYHVASGTSAIVSVGTTGES-----ATLNHDEHADVVMMTLDLADG-RIPVIAGT---------GANATAEAISLTQ   90 (292)
T ss_dssp             HHHHHHHHHTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEEC---------CCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECeeccch-----hhCCHHHHHHHhhhhhhhccc-cceeEeec---------ccchHHHHHHHhc
Confidence            46778888899998888777775     345666655555555554432 23333211         1223455556666


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhC
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~  345 (452)
                      .+.++|++.+.+ +=-....+.+++.+.++.+.+..
T Consensus        91 ~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~~  126 (292)
T d2a6na1          91 RFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHT  126 (292)
T ss_dssp             TTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHTC
T ss_pred             cHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhcc
Confidence            666666664433 33333345555666666655544

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.54  E-value=3.5  Score=37.22  Aligned_cols=107  Identities=17%  Similarity=0.120  Sum_probs=71.2

Q ss_pred             HhHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++..++. |++.|.+.-+.+|.+     ..|.+|-.+.++.+++.++ ..++|.+.+         +..+.+...+++
T Consensus        28 ~~i~~li~~~Gv~gi~v~GttGE~~-----~Ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~s~~~~iela   92 (293)
T d1f74a_          28 QIIRHNIDKMKVDGLYVGGSTGENF-----MLSTEEKKEIFRIAKDEAK-DQIALIAQV---------GSVNLKEAVELG   92 (293)
T ss_dssp             HHHHHHHHTSCCSEEEESSGGGTGG-----GSCHHHHHHHHHHHHHHHT-TSSEEEEEC---------CCSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCCEEEECccCcchh-----hCCHHHHhhhhheeecccc-Ccccccccc---------ccccHHHHHHHH
Confidence            356666655 999888887777754     4677777766655555553 345554222         234677888889


Q ss_pred             HHHHHCCcCEEEEcCCcCC-CcHHHHHHHHHHHHHhCCCccEEEE
Q 012949          310 KELHDMGCFEISLGDTIGV-GTPGTVVPMLEAVMAVVPVEKLAVH  353 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~-~~P~~v~~li~~l~~~~p~~~l~vH  353 (452)
                      +.+.+.|++.|.+.-..-. .+++++.+.++.+.+..+ ++|-+|
T Consensus        93 ~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~-~pi~iY  136 (293)
T d1f74a_          93 KYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG-SNMIVY  136 (293)
T ss_dssp             HHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHC-CCEEEE
T ss_pred             HHHHHcCCCEeeccCccccccchHHHHHHHhcccccCC-ceEEEE
Confidence            9999999998877666553 567777777777766544 355554

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.48  E-value=4.6  Score=36.27  Aligned_cols=106  Identities=10%  Similarity=0.066  Sum_probs=68.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      +.++..++.|++.|-+.-+.+|.+     ..|.+|-.+-++.+++.+ .-..+|.+.+         +..+.+...++++
T Consensus        26 ~~i~~l~~~Gv~Gi~v~GstGE~~-----~Ls~~Er~~~~~~~~~~~-~~~~~vi~gv---------~~~st~~ai~~a~   90 (295)
T d1o5ka_          26 RLVRYQLENGVNALIVLGTTGESP-----TVNEDEREKLVSRTLEIV-DGKIPVIVGA---------GTNSTEKTLKLVK   90 (295)
T ss_dssp             HHHHHHHHTTCCEEEESSGGGTGG-----GCCHHHHHHHHHHHHHHH-TTSSCEEEEC---------CCSCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECeeccchh-----hCCHHHHHHHhhhhcccc-ccCCceEeec---------ccccHHHHHHHHH
Confidence            467788889999998887777753     457777655444444443 2234444211         2345677788888


Q ss_pred             HHHHCCcCEEEE-cCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          311 ELHDMGCFEISL-GDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       311 ~l~~~Gad~I~L-~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      .+.++|+|.|.+ +=-....+++++.+.++.+.+..+ .++-+
T Consensus        91 ~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~~-~pi~i  132 (295)
T d1o5ka_          91 QAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTD-LGIVV  132 (295)
T ss_dssp             HHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEE
T ss_pred             HHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhccC-CCeeE
Confidence            888889886655 334455677888888888777643 34443

>d1xima_ c.1.15.3 (A:) D-xylose isomerase {Actinoplanes missouriensis [TaxId: 1866]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Xylose isomerase
domain: D-xylose isomerase
species: Actinoplanes missouriensis [TaxId: 1866]

Probab=87.38  E-value=1.4  Score=42.54  Aligned_cols=171  Identities=14%  Similarity=0.089  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHCCCCEEEEec-CCCCCcccccCCHHHHHHHHHh---ccCCceeEEecchhhhhhhh-h-hhhhccchh
Q 012949          148 GVKVELIRRLVSSGLPVVEATS-FVSPKWVPQLADARDVMEAVRD---LEGARLPVLTPNLKVILQRS-I-LFQQCHASV  221 (452)
Q Consensus       148 ~~k~~i~~~L~~~Gv~~IEvG~-~~s~~~~p~~~D~e~v~~~i~~---~~~~~l~~l~~~~~~~i~r~-~-~~~~~~~~~  221 (452)
                      .+..+.++.|.++|++.+++=- .+.|. .+.....+++++.+++   -.++++.++++++--. .+. . +++....++
T Consensus        32 ~~~~e~~~~l~~lG~~g~~fHd~dl~P~-~~~~~~~~~~~~~~k~~l~~tGl~~~~~t~nlf~~-p~f~~Ga~TsPD~~v  109 (392)
T d1xima_          32 LDPVEAVHKLAEIGAYGITFHDDDLVPF-GSDAQTRDGIIAGFKKALDETGLIVPMVTTNLFTH-PVFKDGGFTSNDRSV  109 (392)
T ss_dssp             CCHHHHHHHHHHHTCSEEECBHHHHSCT-TCCHHHHHHHHHHHHHHHHHHTCBCCEEECCCSSS-GGGTTCSTTCSSHHH
T ss_pred             cCHHHHHHHHHHhCCCeEeecCCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCeeeeeecccccC-hhhhcCCCCCcCHHH
Confidence            3456778899999999998510 01121 1111122345555554   2578888888764200 000 1 133333232


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHH----HHHHHHHHHHHHHhCCCcEEEEEEeeecCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIED----SLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVE  297 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~----~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~  297 (452)
                      -+.+..-.++.++.+.+.|.+.+.++..-.-.  +..++.+.++    ..+.+.++++++++.|..++..|..   .|.+
T Consensus       110 R~~Ai~~~k~aID~aaeLGa~~~v~W~G~~G~--~~~~~~d~~~~~~~~~e~l~~v~dya~d~g~gv~~~IEp---KP~E  184 (392)
T d1xima_         110 RRYAIRKVLRQMDLGAELGAKTLVLWGGREGA--EYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEP---KPNE  184 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEEECTTSEE--SSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEC---CSSS
T ss_pred             HHHHHHHHHHHHHHHHHhCCCeEEecCCCCcc--CCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCceEEeec---CCCC
Confidence            22222334567888888999988776542110  1113344444    4444556678888888777766664   2333


Q ss_pred             CC--CCHHHHHHHHHHHHHCCcC-EEEE-cCC
Q 012949          298 GA--IPPSKVAYVAKELHDMGCF-EISL-GDT  325 (452)
Q Consensus       298 ~r--~d~e~l~~~a~~l~~~Gad-~I~L-~DT  325 (452)
                      -+  .-...+......+.+.|-. .+.+ .|+
T Consensus       185 P~~~~~i~d~~~al~~i~~vg~p~~vgvnlD~  216 (392)
T d1xima_         185 PRGDILLPTAGHAIAFVQELERPELFGINPET  216 (392)
T ss_dssp             SSSEESSCSHHHHHHHHTTSSSGGGEEECCBH
T ss_pred             CCcceeeCCHHHHHHHHHHcCCccceeEecch
Confidence            22  1123344555666777743 4655 365

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=86.90  E-value=0.21  Score=45.21  Aligned_cols=195  Identities=14%  Similarity=0.134  Sum_probs=111.0

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEE--ecchhhhhhhhhhhhhccchhhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVL--TPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l--~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      +...-.+-++.|.++|++.|-+-..- -.|+|.+.-..+.++.++..++..+-+.  +-+-                   
T Consensus        21 d~~~l~~~i~~l~~~g~d~iHiDImD-G~Fvpn~t~~~~~v~~i~~~t~~~~dvHLMv~~P-------------------   80 (230)
T d1rpxa_          21 NFSKLGEQVKAIEQAGCDWIHVDVMD-GRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEP-------------------   80 (230)
T ss_dssp             CGGGHHHHHHHHHHTTCCCEEEEEEB-SSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSH-------------------
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCcc-CCcCCccccChHHHhhhhhccCceeeeeeeecch-------------------
Confidence            33445567788899999976664210 0123444333456777776666554442  2211                   


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                            .+.++..+++|++.|.+..-..+.              ..+.++++++|++|.++...|.     |.   ++.+
T Consensus        81 ------~~~i~~~~~~g~~~i~~H~E~~~~--------------~~~~~~i~~ik~~g~k~Gialn-----p~---T~~~  132 (230)
T d1rpxa_          81 ------DQRVPDFIKAGADIVSVHCEQSST--------------IHLHRTINQIKSLGAKAGVVLN-----PG---TPLT  132 (230)
T ss_dssp             ------HHHHHHHHHTTCSEEEEECSTTTC--------------SCHHHHHHHHHHTTSEEEEEEC-----TT---CCGG
T ss_pred             ------hhhHHHHhhcccceeEEecccccc--------------ccHHHHHHHHHHcCCeEEEEeC-----CC---CCHH
Confidence                  136778889999999887643221              1235677999999998875443     32   3455


Q ss_pred             HHHHHHHHHHHCCcCEEEEc----CCcCCCcHHHHHHHHHHH----HHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCE
Q 012949          304 KVAYVAKELHDMGCFEISLG----DTIGVGTPGTVVPMLEAV----MAVVPVEKLAVHLHDTYGQSLPNILISLQMGIST  375 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~----DT~G~~~P~~v~~li~~l----~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~  375 (452)
                      .+.+++.     -+|.|-+-    -..|...-..+.+.|+.+    .++.+...|++    |=|.-.-|+-...++||+.
T Consensus       133 ~l~~~l~-----~vD~VllM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~v----DGGIn~~~i~~l~~~Gad~  203 (230)
T d1rpxa_         133 AIEYVLD-----AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANA  203 (230)
T ss_dssp             GGTTTTT-----TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCE
T ss_pred             HHHHHHh-----hCCEEEEEEecCCcccchhhhhhHHHHHHHHHHHHhcCCceEEEE----ECCcCHHHHHHHHHcCCCE
Confidence            5555443     25655432    112222222334444443    34445555665    7788888888999999997


Q ss_pred             EeecccCCCCCCCCCCCCCcccHHHHHHHHHc
Q 012949          376 VDCSVAGLGGCPYAKGASGNVATEDVVYMLSG  407 (452)
Q Consensus       376 VD~Sv~GlGecP~a~graGNaalE~vv~~L~~  407 (452)
                      +=+. .++         -++...++.+..|+.
T Consensus       204 ~V~G-S~i---------f~~~d~~~~i~~lk~  225 (230)
T d1rpxa_         204 LVAG-SAV---------FGAPDYAEAIKGIKT  225 (230)
T ss_dssp             EEES-HHH---------HTSSCHHHHHHHHHT
T ss_pred             EEEC-hHH---------HCCCCHHHHHHHHHH
Confidence            7332 111         123456666777765

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=86.55  E-value=4.7  Score=33.72  Aligned_cols=170  Identities=14%  Similarity=0.111  Sum_probs=94.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhc-cCCceeEEecchhhhhhhhhhhhhccchhhh
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDL-EGARLPVLTPNLKVILQRSILFQQCHASVIS  223 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~-~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i~  223 (452)
                      .+.++-+++++.+.. +|+.+++|++-...      .-.+.++.+++. ++..+...   .+        +...+     
T Consensus        11 ~~~~~~~~~~~~~~~-~vdiikig~~~~~~------~G~~~i~~l~~~~~~~~i~~d---~k--------~~d~~-----   67 (213)
T d1q6oa_          11 QTMDSAYETTRLIAE-EVDIIEVGTILCVG------EGVRAVRDLKALYPHKIVLAD---AK--------IADAG-----   67 (213)
T ss_dssp             SSHHHHHHHHHHHGG-GCSEEEECHHHHHH------HCTHHHHHHHHHCTTSEEEEE---EE--------ECSCH-----
T ss_pred             CCHHHHHHHHHhcCC-CccEEEeCeecccc------CCHHHHHHHHHhcccccceeE---Ee--------eccch-----
Confidence            567888899988765 99999999742111      112345556553 33322111   11        00111     


Q ss_pred             hhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHH
Q 012949          224 SNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPS  303 (452)
Q Consensus       224 ~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e  303 (452)
                            ....+.+.++|+|.+.+.....+               +.+..+++.+++.|..+.+.+.        +..+.+
T Consensus        68 ------~~~~~~~~~~gad~vtvh~~~g~---------------~~~~~~~~~~~~~~~~~~v~~~--------~~~~~~  118 (213)
T d1q6oa_          68 ------KILSRMCFEANADWVTVICCADI---------------NTAKGALDVAKEFNGDVQIELT--------GYWTWE  118 (213)
T ss_dssp             ------HHHHHHHHHTTCSEEEEETTSCH---------------HHHHHHHHHHHHTTCEEEEEEC--------SCCCHH
T ss_pred             ------HHHHHHHHHcCCCEEEEeccCCc---------------hHHHHHHHHHHHcCCceecccC--------CCCCHH
Confidence                  01345677899999988654332               3445677889999988754332        112333


Q ss_pred             HHHHHHHHHHHCCcCEEEEc-----CCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEE
Q 012949          304 KVAYVAKELHDMGCFEISLG-----DTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTV  376 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~-----DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~V  376 (452)
                      .    ...+.+.+++.+.+.     -..|...+....+.++..+..  ..++.+    +-|.-..|.-.++++||+++
T Consensus       119 ~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~----~gGi~~~~~~~~~~~Gad~i  186 (213)
T d1q6oa_         119 Q----AQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSDM--GFKVTV----TGGLALEDLPLFKGIPIHVF  186 (213)
T ss_dssp             H----HHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHHHHT--TCEEEE----ESSCCGGGGGGGTTSCCSEE
T ss_pred             H----HHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHhhcc--CceEec----CCCcCcCCHHHHHHcCCCEE
Confidence            3    344556677655541     122334444444455555442  223332    24666677888899999966

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=86.20  E-value=1.2  Score=40.60  Aligned_cols=83  Identities=17%  Similarity=0.142  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... .+++-+++ +++.--++..+..|-++|
T Consensus        18 g~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G   97 (295)
T d1hl2a_          18 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG   97 (295)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcC
Confidence            468899999999999999999999999988   4788999999998887764 35677766 777888999999999999


Q ss_pred             CCEEeecc
Q 012949          373 ISTVDCSV  380 (452)
Q Consensus       373 a~~VD~Sv  380 (452)
                      |+.+=..-
T Consensus        98 ad~~~v~~  105 (295)
T d1hl2a_          98 FDAVSAVT  105 (295)
T ss_dssp             CSEEEEEC
T ss_pred             Cceeeeee
Confidence            99776643

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=86.18  E-value=1.4  Score=41.17  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcC-EEEEcCCcCCCcHHHHHHHHHHHHHhCCCc
Q 012949          270 YRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCF-EISLGDTIGVGTPGTVVPMLEAVMAVVPVE  348 (452)
Q Consensus       270 ~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~li~~l~~~~p~~  348 (452)
                      +.++.+.|++.|+-|-+     |.     -++.+.+..+++++.+.... .|.+.-...-..+.....++..+.+... +
T Consensus         5 ~k~il~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~a~~~~-v   73 (305)
T d1rvga_           5 GLEILKKAREEGYGVGA-----FN-----VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEAR-V   73 (305)
T ss_dssp             HHHHHHHHHHHTCCEEE-----EE-----CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCS-S
T ss_pred             HHHHHHHHHHCCeEEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEECCccHHhHccHHHHHHHHHHHhccC-C
Confidence            35777889999987752     21     24578888899999998876 5555433333344455555666555544 4


Q ss_pred             cEEEEeCCCcCcHHHHHHHHHHcCCC--EEeecccCCCCCCCCCCCCCc-ccHHHHHHHHH
Q 012949          349 KLAVHLHDTYGQSLPNILISLQMGIS--TVDCSVAGLGGCPYAKGASGN-VATEDVVYMLS  406 (452)
Q Consensus       349 ~l~vH~Hnd~GlA~ANaLaAl~aGa~--~VD~Sv~GlGecP~a~graGN-aalE~vv~~L~  406 (452)
                      |+.+|.  |-|.-+.....|+++|.+  ++|+|-..+-+         | .-|.+++...+
T Consensus        74 pv~lHl--DH~~~~e~i~~ai~~GftSVMiDgS~l~~ee---------Ni~~Tk~vv~~Ah  123 (305)
T d1rvga_          74 PVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFET---------NVRETRRVVEAAH  123 (305)
T ss_dssp             CEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHH
T ss_pred             cEEEee--hhccChhhhHHHHhcCCceEEEcCccccHHH---------HHHHHHHHHHHhc
Confidence            777765  556778999999999998  77999776655         4 34555666555

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=86.17  E-value=3.8  Score=36.99  Aligned_cols=147  Identities=12%  Similarity=0.086  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHH----HHHhccCCceeEEecchhhhhhhhhhhhhccch
Q 012949          145 VPTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVME----AVRDLEGARLPVLTPNLKVILQRSILFQQCHAS  220 (452)
Q Consensus       145 ~~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~----~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~  220 (452)
                      .+.+..++.++.+.+.|.+.|++|..+.+      .+.++.+.    .+++..++.+++=+.+                 
T Consensus        22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~~------~~e~e~~~~vi~~l~~~~~vpiSIDT~~-----------------   78 (262)
T d1f6ya_          22 RDPAPVQEWARRQEEGGARALDLNVGPAV------QDKVSAMEWLVEVTQEVSNLTLCLDSTN-----------------   78 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC----------CHHHHHHHHHHHHHTTCCSEEEEECSC-----------------
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEeCCCCCC------CCHHHHHHHHHHHHHHhhcCCccccCCc-----------------
Confidence            58889999999999999999999954332      23333322    2333444444321221                 


Q ss_pred             hhhhhhhccHHhHHHHHH--cCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC
Q 012949          221 VISSNLWVYLQGFEAAIA--AGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG  298 (452)
Q Consensus       221 ~i~~~~~~~~~~ie~a~~--~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~  298 (452)
                               .+-+++|++  .|++.|.=.....+                ........+++.+..+.  .+.  +.+...
T Consensus        79 ---------~~v~~aal~~~~Ga~iINdIsg~~~----------------~~~~~~~~~~~~~~~v~--~~~--~~~~~~  129 (262)
T d1f6ya_          79 ---------IKAIEAGLKKCKNRAMINSTNAERE----------------KVEKLFPLAVEHGAALI--GLT--MNKTGI  129 (262)
T ss_dssp             ---------HHHHHHHHHHCSSCEEEEEECSCHH----------------HHHHHHHHHHHTTCEEE--EES--CCSSCS
T ss_pred             ---------cHHHHHHHHhhcccceeechhcccc----------------hHHHHHHHHhcCCceEE--EEe--cCCccc
Confidence                     235677777  69887765433211                11234456677787654  121  223333


Q ss_pred             CCCHHHH----HHHHHHHHHCCc--CEEEEcCC------cCCCcHHHHHHHHHHHHHh
Q 012949          299 AIPPSKV----AYVAKELHDMGC--FEISLGDT------IGVGTPGTVVPMLEAVMAV  344 (452)
Q Consensus       299 r~d~e~l----~~~a~~l~~~Ga--d~I~L~DT------~G~~~P~~v~~li~~l~~~  344 (452)
                      .-++++.    .+..+.+.++|+  +.|.+ |.      .+.-++.+..++++.++..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~Gi~~~~Ii~-DPgi~~~~~~~~~~~~~le~l~~l~~~  186 (262)
T d1f6ya_         130 PKDSDTRLAFAMELVAAADEFGLPMEDLYI-DPLILPANVAQDHAPEVLKTLQQIKML  186 (262)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTCCGGGEEE-ECCCCCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             ccCHHHHHHHHHHHHHHHHHcCCCHHHhhc-cceeeeccccchHHHHHHHHHHHHHHH
Confidence            3344443    345556667775  45554 52      1123455667778887763

>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase CelC
species: Clostridium thermocellum [TaxId: 1515]

Probab=85.65  E-value=0.5  Score=43.91  Aligned_cols=62  Identities=16%  Similarity=0.043  Sum_probs=45.1

Q ss_pred             ccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949          228 VYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  289 (452)
Q Consensus       228 ~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~  289 (452)
                      .+.++++..++.|+..|||.++-..+......+.-.++.++.+.++|+.|+++|+.|...+-
T Consensus        29 ~te~d~~~i~~~G~n~vRlpi~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~H   90 (340)
T d1ceoa_          29 ITEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMH   90 (340)
T ss_dssp             SCHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ccHHHHHHHHHcCCCEEEeecCHHHhccCCCCCccCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence            34579999999999999997653322111122222467899999999999999999987764

>d2amxa1 c.1.9.1 (A:20-376) Adenosine deaminase (ADA) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Metallo-dependent hydrolases
family: Adenosine/AMP deaminase
domain: Adenosine deaminase (ADA)
species: Plasmodium yoelii [TaxId: 5861]

Probab=85.50  E-value=7.2  Score=36.32  Aligned_cols=142  Identities=11%  Similarity=0.067  Sum_probs=88.0

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKV-LSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~-~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      +.++.+.+.|+..+-+..+  +.+.....+.+.++.++.+.+.++.+++ .|..+...+++..    ....+.+.+...+
T Consensus       105 ~~~~~~~~~~v~y~Elr~~--p~~~~~~~g~~~~~v~~~i~~g~~~a~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~  178 (357)
T d2amxa1         105 WAVIEKYKEGVVLMEFRYS--PTFVSSSYGLDVELIHKAFIKGIKNATELLNNKIHVALICIS----DTGHAAASIKHSG  178 (357)
T ss_dssp             HHHHHHHHTTEEEEEEEEC--HHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEC----CCCCSHHHHHTTT
T ss_pred             HHHHHHHHhcceeeccccc--ccccccccCcchHHHHHHHHHHHHHHHHhcCCceEEEeeecc----cccchhhhHHHHH
Confidence            3556666778877776654  3333344578899999999998887765 6777665555432    1122345555555


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcH-HHHHHHHHHHHHhCCCccEEEEeCCCcCc-HHHHHHHHHH-cCCCEEeeccc
Q 012949          310 KELHDMGCFEISLGDTIGVGTP-GTVVPMLEAVMAVVPVEKLAVHLHDTYGQ-SLPNILISLQ-MGISTVDCSVA  381 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P-~~v~~li~~l~~~~p~~~l~vH~Hnd~Gl-A~ANaLaAl~-aGa~~VD~Sv~  381 (452)
                      ..+.+.+-..+.+ |..|.-.+ ....+.+...++  .+.++.+|+-.+.+. ...+...|+. .|+++|+=.+.
T Consensus       179 ~~a~~~~~~vvGi-dl~g~e~~~~~~~~~f~~ar~--~gl~it~HaGE~~~~~~~~~i~~ai~~l~~~RIgHGv~  250 (357)
T d2amxa1         179 DFAIKHKHDFVGF-DHGGREIDLKDHKDVYHSVRD--HGLHLTVHAGEDATLPNLNTLYTAINILNVERIGHGIR  250 (357)
T ss_dssp             HHHHHTTTTEEEE-ECCSSCCCCGGGHHHHHHHHH--TTCEEEEEESCCTTCSSSHHHHHHHHTSCCSEEEECGG
T ss_pred             HHHHhcCCceEee-cccCCcccchhhHHHHHHHHh--cCCcccccccccCCCCChHHHHHHHHccCCcccccchh
Confidence            6666665445554 44444322 234566666665  356788888776532 3466777885 79999876665

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.39  E-value=3.1  Score=37.87  Aligned_cols=145  Identities=14%  Similarity=0.140  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCCCCCcccccCCH---HHHHHHHHhccCCceeEEecchhhhhhhhhhhhhccchhh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSFVSPKWVPQLADA---RDVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHASVI  222 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~---e~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~~~i  222 (452)
                      +.+..++.++.+.+.|.++|++....     |.-.+.   +.+++.++...++.++.=+++                   
T Consensus        38 d~d~~~~~A~~qv~~GA~iLDIn~~~-----~~~~e~~~m~~li~~l~~~~d~PlsIDT~~-------------------   93 (260)
T d3bofa1          38 NEEIVIKEAKTQVEKGAEVLDVNFGI-----ESQIDVRYVEKIVQTLPYVSNVPLSLDIQN-------------------   93 (260)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEECSS-----GGGSCHHHHHHHHHHHHHHTCSCEEEECCC-------------------
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCC-----chhhhHHHHHHHHHHHHhcCCCCccccCCC-------------------
Confidence            45788999999999999999998643     222233   333444444444443321222                   


Q ss_pred             hhhhhccHHhHHHHHHc--CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCC
Q 012949          223 SSNLWVYLQGFEAAIAA--GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAI  300 (452)
Q Consensus       223 ~~~~~~~~~~ie~a~~~--Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~  300 (452)
                             .+-+++|++.  |.+.|.=. +.-+               .+...++..+|++|..|.+  ++ .. + ...-
T Consensus        94 -------~~v~eaaLk~~~G~~iINsi-s~e~---------------~~~~~~~~l~~~yga~vI~--l~-~d-~-g~p~  145 (260)
T d3bofa1          94 -------VDLTERALRAYPGRSLFNSA-KVDE---------------EELEMKINLLKKYGGTLIV--LL-MG-K-DVPK  145 (260)
T ss_dssp             -------HHHHHHHHHHCSSCCEEEEE-ESCH---------------HHHHHHHHHHHHHCCEEEE--ES-CS-S-SCCC
T ss_pred             -------HHHHHHHHHHhcCcceEeec-cccc---------------chHHHHHHHHHhcCCCEEE--Ee-cC-C-cccc
Confidence                   2367888887  87766532 2211               2344567889999988752  22 21 1 1223


Q ss_pred             CHHH----HHHHHHHHHHCCc-CEEEEcCC----cCC-CcHHHHHHHHHHHHH
Q 012949          301 PPSK----VAYVAKELHDMGC-FEISLGDT----IGV-GTPGTVVPMLEAVMA  343 (452)
Q Consensus       301 d~e~----l~~~a~~l~~~Ga-d~I~L~DT----~G~-~~P~~v~~li~~l~~  343 (452)
                      +.+.    +.++.+.+..+|. +.|.+ |.    +|. -.+.++-+.++.+++
T Consensus       146 ~~~er~~~~~~~~~~~~~~g~~e~ii~-DPli~~~~t~~~~~~~l~~i~~i~~  197 (260)
T d3bofa1         146 SFEERKEYFEKALKILERHDFSDRVIF-DPGVLPLGAEGKPVEVLKTIEFISS  197 (260)
T ss_dssp             SHHHHHHHHHHHHHHHHHTTCGGGEEE-ECCCCCGGGTCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhcCCcHhhee-cccceeccchHHHHHHHHHHHHHHh
Confidence            3443    3334445556664 46666 72    121 123445555566554

>d1f61a_ c.1.12.7 (A:) Isocitrate lyase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Isocitrate lyase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.02  E-value=11  Score=36.46  Aligned_cols=199  Identities=14%  Similarity=0.066  Sum_probs=125.2

Q ss_pred             hHHHHHHcCCCEEEEEecCCh----HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC---------
Q 012949          232 GFEAAIAAGAKEVAIFASASE----AFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---------  298 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd----~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~---------  298 (452)
                      .++..+++|+.-|+|-+.+.+    -|...+-=.+.+|++.++..+...+...|.+.. -+..+- .....         
T Consensus       167 tvk~~i~AGaAgihiEDQ~~~~KkCGH~~GK~lvp~~e~~~ki~Aa~~a~d~~~~~~~-iiARTD-A~~a~~i~s~~d~~  244 (418)
T d1f61a_         167 LQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTV-VIARTD-AEAATLITSDVDER  244 (418)
T ss_dssp             HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHTTCCCE-EEEEEC-TTTCCEESCSCSTT
T ss_pred             HHHHHHHhCCcEEEEeccCCCCccccccCCcccCCHHHHHHHHHHHHHhhhcCCCCeE-EEEEcc-hhhhcccccccccc
Confidence            677888999999999988655    122222223689999998776666555665421 122210 00000         


Q ss_pred             -----------------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          299 -----------------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       299 -----------------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                                       +-..+...+=++...++|++.+...   +.-+.+++.++.+.++..+|...+++-+---+..-
T Consensus       245 D~~~i~g~rt~eG~y~~~~g~e~AI~Ra~aya~~gd~i~~e~---~~~~~ee~~~f~~~v~~~~~~~~l~~~~sPsf~w~  321 (418)
T d1f61a_         245 DQPFITGERTREGFYRTKNGIEPCIARAKAYAPFADLIWMET---GTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWK  321 (418)
T ss_dssp             TGGGEEEEECTTSCEEECCSHHHHHHHHHHHGGGCSEEEECC---SSCCHHHHHHHHHHHHTTCTTCEEEEECCSSSCHH
T ss_pred             cccccccccCccccccccCCHHHHHHHHHhhhhccCeEEecc---CCCCHHHHHHHHhhcCCCcchhhcccCcccCCCcc
Confidence                             0112445555566677777666643   34567999999999998888766665443333321


Q ss_pred             -------HHHHHHH-HHcCCCEEeecccCCCCCCCCCCCCCcccHHHHHHHHHcCCCCCCCChhhHHHHHHHHHHHhCCC
Q 012949          362 -------LPNILIS-LQMGISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLSGLGVETNVDLRKLMLAGDFINKHLGRP  433 (452)
Q Consensus       362 -------~ANaLaA-l~aGa~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~~~Gi~t~iDl~~L~~la~~v~~~~g~~  433 (452)
                             .++...- -+.|..++=-++.|+        ++.+.++.++...++..|.. .+  .. +...+...+..|..
T Consensus       322 ~~~~~~~~~~~~~eL~~~Gy~~~~i~la~~--------~a~~~a~~~la~~~~~~Gm~-ay--~e-lQ~re~~~~~~Gy~  389 (418)
T d1f61a_         322 KHLDDATIAKFQKELAAMGFKFQFITLAGF--------HALNYSMFDLAYGYAQNQMS-AY--VE-LQEREFAAEERGYT  389 (418)
T ss_dssp             HHSCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHH-HH--HH-HHHHHHHHGGGTCC
T ss_pred             cccCHhhhhhhHHHHHhcCccEEEeccHHH--------HHHHHHHHHHHHHHHhcCcc-HH--HH-HhhHHHHHHhcCCc
Confidence                   2222222 268999888888888        77899999999988876531 11  22 23445556677888


Q ss_pred             CCCCcccccchhhh
Q 012949          434 SGSKTAIALNRIAA  447 (452)
Q Consensus       434 ~p~~~pi~G~~vf~  447 (452)
                      .-.++-.+|.+.|-
T Consensus       390 ~~khQ~~vG~~y~D  403 (418)
T d1f61a_         390 ATKHQREVGAGYFD  403 (418)
T ss_dssp             TTSHHHHTTHHHHH
T ss_pred             eeehhhhhcccHHH
Confidence            77778888877663

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=84.97  E-value=4.6  Score=36.74  Aligned_cols=95  Identities=17%  Similarity=0.205  Sum_probs=63.1

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee------ec-CCCCCCC--CH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV------VG-CPVEGAI--PP  302 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~------~g-~p~~~r~--d~  302 (452)
                      .....+++|++.|.+--+.                  ...++|++..+.|++|.+.|-..      +| .-..+++  +.
T Consensus        97 ~a~~l~~~GAdaVKlEgg~------------------~~~~~I~~L~~~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea  158 (262)
T d1m3ua_          97 NAATVMRAGANMVKIEGGE------------------WLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG  158 (262)
T ss_dssp             HHHHHHHTTCSEEECCCSG------------------GGHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHHH
T ss_pred             HHHHHHhcCCcEEEeccch------------------hHHHHHHHHHHcCCeEEeehhhchhhhhhcCCccccCccHHHH
Confidence            3445668999999876542                  12367788889999999888753      00 0011332  23


Q ss_pred             HHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEE
Q 012949          303 SKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAV  352 (452)
Q Consensus       303 e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~v  352 (452)
                      ..+.+.++.+.++||..|.|-     ..|.++.+.|..   +++...|++
T Consensus       159 ~~l~~~a~~le~AGaf~ivlE-----~vp~~va~~It~---~~~IPtIGI  200 (262)
T d1m3ua_         159 DQLLSDALALEAAGAQLLVLE-----CVPVELAKRITE---ALAIPVIGI  200 (262)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEE-----SCCHHHHHHHHH---HCSSCEEEE
T ss_pred             HHHHHHHHHHHhhcceEEEEe-----cccHHHHHHHHh---hhcceeEee
Confidence            467788899999999999995     478888887763   444333444

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=84.85  E-value=1.8  Score=39.23  Aligned_cols=80  Identities=9%  Similarity=0.088  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHHC-CcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHc
Q 012949          298 GAIPPSKVAYVAKELHDM-GCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQM  371 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~-Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~a  371 (452)
                      +..|.+-+.+.++.+.+. |++.|.++=|+|   .++.++-.++++.+++..+ .++|-+|. |++..-++.-+..|-++
T Consensus        19 g~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~   98 (293)
T d1f74a_          19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHc
Confidence            468899999999988765 999999998887   4678888888988887764 35788888 88899999999999999


Q ss_pred             CCCEEe
Q 012949          372 GISTVD  377 (452)
Q Consensus       372 Ga~~VD  377 (452)
                      |++.|=
T Consensus        99 Gad~i~  104 (293)
T d1f74a_          99 GYDCLS  104 (293)
T ss_dssp             TCSEEE
T ss_pred             CCCEee
Confidence            999873

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.62  E-value=3.2  Score=38.94  Aligned_cols=94  Identities=21%  Similarity=0.210  Sum_probs=61.5

Q ss_pred             HHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEE
Q 012949          272 AVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLA  351 (452)
Q Consensus       272 ~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~  351 (452)
                      +.++..|+....+.+.+    |      .+++ ..+.++.+.++|+|.|.+ | +....+..+.+.++.+++.+|+.++-
T Consensus        77 ~~i~~vk~~~~~v~~~v----g------v~~~-~~e~~~~li~agvd~ivI-d-~A~G~~~~~~~~ik~ik~~~~~~~vi  143 (330)
T d1vrda1          77 RQVSIVKKTRLLVGAAV----G------TSPE-TMERVEKLVKAGVDVIVI-D-TAHGHSRRVIETLEMIKADYPDLPVV  143 (330)
T ss_dssp             HHHHHHHTCCBCCEEEE----C------SSTT-HHHHHHHHHHTTCSEEEE-C-CSCCSSHHHHHHHHHHHHHCTTSCEE
T ss_pred             HHHHHHhhhccEEEEEE----e------cCHH-HHHHHHHHHHCCCCEEEE-e-cCCCCchhHHHHHHHHHHhCCCCCEE
Confidence            34466666665554322    2      1233 335677888999999888 5 45667888899999999999886655


Q ss_pred             EEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          352 VHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       352 vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      .+-=-+.    ..+...+++|||.|=+   |+|.
T Consensus       144 aGnV~t~----~~a~~l~~~GaD~v~V---Gig~  170 (330)
T d1vrda1         144 AGNVATP----EGTEALIKAGADAVKV---GVGP  170 (330)
T ss_dssp             EEEECSH----HHHHHHHHTTCSEEEE---CSSC
T ss_pred             eechhHH----HHHHHHHHcCCCEEee---cccc
Confidence            4432222    2245667899988765   5555

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.46  E-value=11  Score=33.17  Aligned_cols=144  Identities=10%  Similarity=0.098  Sum_probs=74.0

Q ss_pred             CCCchhhHHHHHhhhcCCCC-ccEEEeCCccccCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEEecCCCCCcccccCCHH
Q 012949          106 NCNDKDIRDITNKFLKGIPR-FVKIVEVGPRDGLQNEKNTVPTGVKVELIRRLVSS-GLPVVEATSFVSPKWVPQLADAR  183 (452)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~p~-~V~I~D~TLRDG~Q~~~~~~~~~~k~~i~~~L~~~-Gv~~IEvG~~~s~~~~p~~~D~e  183 (452)
                      ..+.....++..++-..... ++-++=-|-.+|++.   ..+.+++.++...+.+. |+++|++=+..... ++   ...
T Consensus        41 ~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~---~~~~~~~~~ll~~~~~~~~~d~iDiE~~~~~~-~~---~~~  113 (236)
T d1sfla_          41 NVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYG---QFTNDSYLNLISDLANINGIDMIDIEWQADID-IE---KHQ  113 (236)
T ss_dssp             TCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCB---CCCHHHHHHHHHHGGGCTTCCEEEEECCTTSC-HH---HHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCC---CCCHHHHHHHHHHHHHhcCCchhhhhhcchhh-HH---HHH
Confidence            33445566777775433322 233333333445443   57899999999888776 68999997643111 00   112


Q ss_pred             HHHHHHHhccCCceeEEecchhhhhhhhhhhhhccc--hhhhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCC
Q 012949          184 DVMEAVRDLEGARLPVLTPNLKVILQRSILFQQCHA--SVISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINC  261 (452)
Q Consensus       184 ~v~~~i~~~~~~~l~~l~~~~~~~i~r~~~~~~~~~--~~i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~  261 (452)
                      .+...++. .+.++-+=..+          |..++.  ++        .+-++.+.+.|.|.+.|.+.+++         
T Consensus       114 ~~~~~~~~-~~~~vI~S~H~----------f~~TP~~~el--------~~~~~~~~~~gaDivKia~~~~~---------  165 (236)
T d1sfla_         114 RIITHLQQ-YNKEVIISHHN----------FESTPPLDEL--------QFIFFKMQKFNPEYVKLAVMPHN---------  165 (236)
T ss_dssp             HHHHHHHH-TTCEEEEEEEE----------SSCCCCHHHH--------HHHHHHHHTTCCSEEEEEECCSS---------
T ss_pred             HHHHHhhc-CCCEEEEEEcC----------CCCCCCHHHH--------HHHHHHHHHhCCCeEEEEEecCC---------
Confidence            22333322 23333211111          112221  11        12566777899999999986654         


Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEE
Q 012949          262 SIEDSLVRYRAVAHAAKVLSIPVR  285 (452)
Q Consensus       262 s~e~~l~~~~~~v~~Ak~~G~~V~  285 (452)
                       .+++++.+....++.++.+.++.
T Consensus       166 -~~D~~~ll~~~~~~~~~~~~pii  188 (236)
T d1sfla_         166 -KNDVLNLLQAMSTFSDTMDCKVV  188 (236)
T ss_dssp             -HHHHHHHHHHHHHHHHHCSSEEE
T ss_pred             -HHHHHHHHHHHHHHhhccCCCEE
Confidence             45666655333333334566654

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=16  Score=33.86  Aligned_cols=157  Identities=13%  Similarity=0.067  Sum_probs=82.3

Q ss_pred             HHHHHHHHCCCCEEEEecCCCCCcccccCCHHHHHHHHHhccCCceeEEe-cchhhhhhhhhhhhhccchhhhhhhhccH
Q 012949          152 ELIRRLVSSGLPVVEATSFVSPKWVPQLADARDVMEAVRDLEGARLPVLT-PNLKVILQRSILFQQCHASVISSNLWVYL  230 (452)
Q Consensus       152 ~i~~~L~~~Gv~~IEvG~~~s~~~~p~~~D~e~v~~~i~~~~~~~l~~l~-~~~~~~i~r~~~~~~~~~~~i~~~~~~~~  230 (452)
                      +.++.|.+.|||.|-+=.+         .+.++...++..+....+++++ -..... .++.+    .         ...
T Consensus       133 ~q~~~l~~~gvD~il~ETm---------~~~~Ea~~a~~a~~~~~~Pv~~s~t~~~~-g~l~~----g---------~~~  189 (361)
T d1lt7a_         133 QQLEVFMKKNVDFLIAEYF---------EHVEEAVWAVETLIASGKPVAATMAIGPE-GDLHG----V---------PPG  189 (361)
T ss_dssp             HHHHHHHHTTCSEEEECCC---------SCHHHHHHHHHHHGGGSSCEEEEECCBTT-BSTTS----C---------CHH
T ss_pred             HHHHHHHhhccchhhhHHH---------hhHHHHHHHHHHHhhccceEEEEEEEcCC-CcccC----C---------CcH
Confidence            3567778899998877432         2444544444433223333332 111100 00000    0         012


Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe-eecCCCCC-----------
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC-VVGCPVEG-----------  298 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~-~~g~p~~~-----------  298 (452)
                      +.+..+.+.+++.+.+.+...+..           ....+..+-+.....+....+.... .+..|+++           
T Consensus       190 e~~~~~~~~~~~~~g~nc~~~p~~-----------~~~~i~~l~~~~~~~~~~~~~~~~p~~~~~pn~~~~~~~~~p~~~  258 (361)
T d1lt7a_         190 EAAVRLVKAGASIIGVNCHFDPTI-----------SLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFP  258 (361)
T ss_dssp             HHHHHHHHTTCSEEEEESSSCHHH-----------HHHHHHHHHHHHHHTTCCCEEEEECCSBCCTTCCTTCGGGSTTTT
T ss_pred             HHHHHHHhcccchhhhccccchHh-----------HHHHHHHHHHhhhhhcccceeeeccccccCCCCCccccCCCCCCc
Confidence            356667788999988887665532           2222222223333334432211110 11112221           


Q ss_pred             ------CCCHHHHHHHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhC
Q 012949          299 ------AIPPSKVAYVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVV  345 (452)
Q Consensus       299 ------r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~  345 (452)
                            ..+++++.++++.+.+.|+..|.=  =-| .+|+.++.|.+.|+..-
T Consensus       259 ~~~~~~~~~~~~~~~~a~~~~~~Ga~iIGG--CCG-ttP~HI~~la~~l~~~~  308 (361)
T d1lt7a_         259 FGLEPRVATRWDIQKYAREAYNLGVRYIGG--CCG-FEPYHIRAIAEELAPER  308 (361)
T ss_dssp             TSCGGGBCCHHHHHHHHHHHHHHTCCEECC--CTT-CCHHHHHHHHHHTHHHH
T ss_pred             CCcccccCCHHHHHHHHHHHHHCCCcEEEE--CCC-CCHHHHHHHHHHHhhhc
Confidence                  135678899999999999987632  222 39999999999997753

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=83.88  E-value=6.1  Score=35.20  Aligned_cols=140  Identities=19%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      -.+.|.+.|+.-|-++    +.|            +..+   .+..+..+++|.    .+.|+|. +..+.+.-..-++.
T Consensus        41 lc~~A~~~~~~avcV~----p~~------------v~~a---~~~l~~s~v~v~----tVigFP~-G~~~~~~k~~E~~~   96 (234)
T d1n7ka_          41 LVREASDYGFRCAVLT----PVY------------TVKI---SGLAEKLGVKLC----SVIGFPL-GQAPLEVKLVEAQT   96 (234)
T ss_dssp             HHHHHHHHTCSEEEEC----HHH------------HHHH---HHHHHHHTCCEE----EEESTTT-CCSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEEC----cHh------------HHHH---HHHhhcCCCceE----EEEecCC-CCCcHHHHHHHHHH
Confidence            4566777888766654    221            2222   233344566654    4457786 45677777777888


Q ss_pred             HHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh---CCC-c--cEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          312 LHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV---VPV-E--KLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~---~p~-~--~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      +.+.||+.|-+.=-.|.. .+..++.+..+.+.   .+. +  .|+....++--.. ..+..++++||++|-+| .|.+.
T Consensus        97 Ai~~GAdEID~Vin~~~~-~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~-~a~~~a~~aGadFVKTS-TG~~~  173 (234)
T d1n7ka_          97 VLEAGATELDVVPHLSLG-PEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLS-LLVDSSRRAGADIVKTS-TGVYT  173 (234)
T ss_dssp             HHHHTCCEEEECCCGGGC-HHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHH-HHHHHHHHTTCSEEESC-CSSSC
T ss_pred             HHHcCCCeEEEEechhhh-hhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHH-HHHHHHHHhhhhheeec-ccccC
Confidence            888999999887555554 34444434443332   221 1  2343444444444 34557899999999988 45433


Q ss_pred             CCCCCCCCCcccHHHHHHHHH
Q 012949          386 CPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       386 cP~a~graGNaalE~vv~~L~  406 (452)
                              +++..++++.+++
T Consensus       174 --------~gat~~~~~~l~~  186 (234)
T d1n7ka_         174 --------KGGDPVTVFRLAS  186 (234)
T ss_dssp             --------CCCSHHHHHHHHH
T ss_pred             --------CCCCHHHHHHHHH
Confidence                    2234566655544

>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Exo-beta-(1,3)-glucanase
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=83.50  E-value=2  Score=40.83  Aligned_cols=63  Identities=16%  Similarity=0.040  Sum_probs=44.2

Q ss_pred             hccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEe
Q 012949          227 WVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSC  290 (452)
Q Consensus       227 ~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~  290 (452)
                      |++.+|++..++.|+..|||.+.-........ ..-.+..++.+.++|+.|+++|+.|...+=.
T Consensus        68 ~it~~D~~~i~~~G~N~VRiPv~~~~~~~~~~-~~~~~~~~~~ld~~i~~a~~~gl~VilDlH~  130 (394)
T d2pb1a1          68 WITEQDFKQISNLGLNFVRIPIGYWAFQLLDN-DPYVQGQVQYLEKALGWARKNNIRVWIDLHG  130 (394)
T ss_dssp             SSCHHHHHHHHHTTCCEEEEEEEGGGTCCCTT-CCCCCCHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             cCCHHHHHHHHHCCCCEEEEEecHHHhcCCCC-CccchhHHHHHHHHHHHHHHCCcEEEEEeec
Confidence            55678999999999999999775322111000 0112346788889999999999999876643

>d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.41  E-value=1.1  Score=40.88  Aligned_cols=149  Identities=16%  Similarity=0.070  Sum_probs=88.5

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCC-CCCCCCHHHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCP-VEGAIPPSKVAYVA  309 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p-~~~r~d~e~l~~~a  309 (452)
                      +|+-.....-+|.+-+....+-.+             ..+++-++.+|++|+.|.      +|.. ++..+-...+.++.
T Consensus        32 eD~Le~~g~yID~vK~g~Gts~l~-------------~~L~eKI~l~~~~~V~v~------~GGtlfE~a~~~~~~~~y~   92 (249)
T d1u83a_          32 KDAIAGASDYIDFVKFGWGTSLLT-------------KDLEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFH   92 (249)
T ss_dssp             HHHHHHHGGGCCEEEECTTGGGGC-------------TTHHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhhhhheeEEEecCceeccC-------------HHHHHHHHHHHHcCCeEe------CCCHHHHHHHHcCCHHHHH
Confidence            455556667899999987765431             125678899999999875      2210 00001112355677


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCC--------CcCcHHHHHHHHHHcCCCEE--eec
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHD--------TYGQSLPNILISLQMGISTV--DCS  379 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hn--------d~GlA~ANaLaAl~aGa~~V--D~S  379 (452)
                      +.+.++|.+.|-+.|...-+...+-.++|+.+++.+-  .+.=+.--        +...-+-.+...++|||+.|  ++-
T Consensus        93 ~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~~~~--V~sEvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEar  170 (249)
T d1u83a_          93 RYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFL--VLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEAR  170 (249)
T ss_dssp             HHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTSE--EEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC--
T ss_pred             HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhcCe--eccccCCcCccccCCCCHHHHHHHHHHHHHCCCceEEeehh
Confidence            8888999999999999999999999999998887541  12111111        22334567788899999955  442


Q ss_pred             c---cCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          380 V---AGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       380 v---~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      =   .|+=+      ..|+.....+-..+.
T Consensus       171 Esg~~Gi~~------~~g~~r~~~i~~ii~  194 (249)
T d1u83a_         171 ESGTGGICS------SSGDVRFQIVDDIIS  194 (249)
T ss_dssp             ----------------------CCHHHHHT
T ss_pred             ccCCCCCcC------CCcchhHHHHHHHHH
Confidence            1   25544      556665554444443

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=83.37  E-value=2.5  Score=38.29  Aligned_cols=99  Identities=10%  Similarity=0.040  Sum_probs=75.8

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.+.++.+.+.|++.|.++-|+|   .++.++-.++++.+.+... .+++-+|. +++.-.++..+..|-++|
T Consensus        17 ~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~G   96 (292)
T d2a6na1          17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcC
Confidence            468899999999999999999999999999   4677887888888877754 35677776 777777888888888999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      ++.+=..-      ||-.    .++-++++.+++
T Consensus        97 ad~~~~~p------P~~~----~~~~~~i~~~f~  120 (292)
T d2a6na1          97 IVGCLTVT------PYYN----RPSQEGLYQHFK  120 (292)
T ss_dssp             CCEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred             CcceeccC------CCCC----CCCHHHHHHHHH
Confidence            99765553      2211    245666776666

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=83.26  E-value=8.4  Score=31.15  Aligned_cols=85  Identities=20%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSI-PVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~-~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      -++.+.+.+.+.|.+......             .+..+.++++..|+.+. .+-..+-   |.......+   ..+..+
T Consensus        46 iv~a~~~~~~d~v~lS~~~~~-------------~~~~~~~~~~~l~~~~~~~i~iivG---G~~~~~~~~---~~~~~~  106 (137)
T d1ccwa_          46 FIKAAIETKADAILVSSLYGQ-------------GEIDCKGLRQKCDEAGLEGILLYVG---GNIVVGKQH---WPDVEK  106 (137)
T ss_dssp             HHHHHHHHTCSEEEEEECSST-------------HHHHHTTHHHHHHHTTCTTCEEEEE---ESCSSSSCC---HHHHHH
T ss_pred             HHHHHHhcCCCEEEEeecccc-------------chHHHHHHHHHHHHhccCCCEEEEe---CCcCCCccc---cHHHHH
Confidence            345566677788888765443             23555566666666654 2221111   111111122   334556


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHH
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLE  339 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~  339 (452)
                      .+.++|++.|+-++|    .|+++.+.++
T Consensus       107 ~l~~~Gv~~if~~~t----~~~~~~~~l~  131 (137)
T d1ccwa_         107 RFKDMGYDRVYAPGT----PPEVGIADLK  131 (137)
T ss_dssp             HHHHTTCSEECCTTC----CHHHHHHHHH
T ss_pred             HHHHcCCCEEECCCC----CHHHHHHHHH
Confidence            678889999988876    5555544443

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.07  E-value=3.3  Score=35.23  Aligned_cols=74  Identities=14%  Similarity=0.219  Sum_probs=57.7

Q ss_pred             HHHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCC
Q 012949          307 YVAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGG  385 (452)
Q Consensus       307 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGe  385 (452)
                      ...+.+.++|++.|.+....+....+...+.++..++..+...+..+.++     ...++.+.++|++.|..+..|.+.
T Consensus        79 ~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t-----~~~a~~~~~~g~d~i~~~~~~~~~  152 (222)
T d1y0ea_          79 KEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYTS  152 (222)
T ss_dssp             HHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSST
T ss_pred             HHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCC-----HHHHHHHHHcCCCeEEEeccCCcc
Confidence            45556777899999998888887777888889999888877555555555     567888999999999877666554

>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]

Probab=82.66  E-value=1.2  Score=41.58  Aligned_cols=84  Identities=15%  Similarity=0.085  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHCCcCEEEEcCCcCCCcHHH---------HHHHHHHHHHhCCCccEEEEeCCCcCcHHHHHHHHHHcCCC
Q 012949          304 KVAYVAKELHDMGCFEISLGDTIGVGTPGT---------VVPMLEAVMAVVPVEKLAVHLHDTYGQSLPNILISLQMGIS  374 (452)
Q Consensus       304 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~---------v~~li~~l~~~~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~  374 (452)
                      .+.++++...++||+.|.+.|+.+...+.+         +.+++..+++..+..++..|++++...- .   .-...|++
T Consensus       184 ~~~~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~  259 (343)
T d1j93a_         184 SMAKYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLL-E---RLPLTGVD  259 (343)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCTTTG-G---GGGGGCCS
T ss_pred             HHHHHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCceeeecccccchh-h---hhhccCcc
Confidence            344566678889999999999988774433         3456677777777778889999864322 1   12246666


Q ss_pred             EEeecccCCCCCCCCCCCCCcccHHHHHHHH
Q 012949          375 TVDCSVAGLGGCPYAKGASGNVATEDVVYML  405 (452)
Q Consensus       375 ~VD~Sv~GlGecP~a~graGNaalE~vv~~L  405 (452)
                      .+..     ..         ++++.+....+
T Consensus       260 ~is~-----d~---------~~~l~~a~~~~  276 (343)
T d1j93a_         260 VVSL-----DW---------TVDMADGRRRL  276 (343)
T ss_dssp             EEEC-----CT---------TSCHHHHHHHT
T ss_pred             cccc-----cc---------ccchHHHHHHh
Confidence            5532     33         46777765555

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.49  E-value=4.7  Score=36.20  Aligned_cols=99  Identities=12%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEeC-CCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHLH-DTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~H-nd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+-+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+..+ .+++-+|+= .+.-.++..+..|-++|
T Consensus        17 ~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~G   96 (295)
T d1o5ka_          17 GELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG   96 (295)
T ss_dssp             TEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcC
Confidence            468889999999999999999999999987   4678888888888887764 356777764 56678899999999999


Q ss_pred             CCEEeecccCCCCCCCCCCCCCcccHHHHHHHHH
Q 012949          373 ISTVDCSVAGLGGCPYAKGASGNVATEDVVYMLS  406 (452)
Q Consensus       373 a~~VD~Sv~GlGecP~a~graGNaalE~vv~~L~  406 (452)
                      |+.|-..-      ||-.    .++-++++.+++
T Consensus        97 ad~v~v~p------P~y~----~~s~~~i~~~~~  120 (295)
T d1o5ka_          97 ANGVLVVT------PYYN----KPTQEGLYQHYK  120 (295)
T ss_dssp             CSEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred             CCEEEEeC------CCCC----CCCHHHHHHHHH
Confidence            99886533      2211    245566766665

>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=82.48  E-value=9.3  Score=35.35  Aligned_cols=131  Identities=15%  Similarity=0.076  Sum_probs=75.8

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC---C--------C
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---A--------I  300 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~---r--------~  300 (452)
                      -++..+++|+..||+-+-.++.-     +   ...++++.+++++||+.|++|...+-+.  ...+.   +        .
T Consensus        32 ~~~~lk~~G~n~VRlrvW~~p~~-----g---~~~~~~~~~~~~~a~~~Gm~vll~~hys--d~Wadp~~q~~P~aw~~~  101 (334)
T d1foba_          32 LETILADAGINSIRQRVWVNPSD-----G---SYDLDYNLELAKRVKAAGMSLYLDLHLS--DTWADPSDQTTPSGWSTT  101 (334)
T ss_dssp             HHHHHHHHTCCEEEEEECSCCTT-----C---TTCHHHHHHHHHHHHHTTCEEEEEECCS--SSCCBTTBCBCCTTSCSS
T ss_pred             HHHHHHHcCCCEEEeeeeeCCCC-----C---cCcHHHHHHHHHHHHHCCCEEEEEecCC--CcccCCCcCCCccccccc
Confidence            35567889999999876433321     1   1246788889999999999998766432  11111   0        1


Q ss_pred             CH--------HHHHHHHHHHHHCCc--CEEEEcCCc--CC-------CcHHHHHHHHH----HHHHhC--CCccEEEEeC
Q 012949          301 PP--------SKVAYVAKELHDMGC--FEISLGDTI--GV-------GTPGTVVPMLE----AVMAVV--PVEKLAVHLH  355 (452)
Q Consensus       301 d~--------e~l~~~a~~l~~~Ga--d~I~L~DT~--G~-------~~P~~v~~li~----~l~~~~--p~~~l~vH~H  355 (452)
                      +.        ++..++++.+.++|.  +.+.+-.=.  |.       -.+.....+++    ++|+.-  +.+.+.+|+|
T Consensus       102 ~~~~~~~~~~~~t~~v~~~~k~~~~~~~~vqIgNE~n~g~~w~~g~~~~~~~~a~ll~a~~~aVr~~~~~~~~~i~~~~~  181 (334)
T d1foba_         102 DLGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLD  181 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEES
T ss_pred             ccccHHHHHHHHHHHHHHHHHhcCCCceEEEcccccCccccCCCCCCCCHHHHHHHHHHHHHHHHHhhcccccceeeecc
Confidence            11        344567777888874  466665432  22       34456666644    444433  3456888888


Q ss_pred             CCcCcHHH--HHHHHHHcC
Q 012949          356 DTYGQSLP--NILISLQMG  372 (452)
Q Consensus       356 nd~GlA~A--NaLaAl~aG  372 (452)
                      +-......  ..-.-+..|
T Consensus       182 ~~~~~~~~~~~~~~~~~~g  200 (334)
T d1foba_         182 DGWSWDQQNYFYETVLATG  200 (334)
T ss_dssp             CTTCHHHHHHHHHHHHHTS
T ss_pred             cCCChhhhHHHHHHHHhcC
Confidence            75443322  233344555

>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermotoga maritima [TaxId: 2336]

Probab=82.40  E-value=1.6  Score=42.29  Aligned_cols=84  Identities=12%  Similarity=0.024  Sum_probs=61.2

Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--------CCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--------EGAI  300 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--------~~r~  300 (452)
                      +++|++.+++.|+...|+.++=|-++-+. .+.=-++.++-+.++++.+++.|++..++|-. |..|.        ..+-
T Consensus        59 y~eDi~l~~~lG~~~yRfsi~WsRi~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~P~VTL~H-f~~P~wl~~~gGw~~~~  136 (443)
T d2j78a1          59 WKEDIEIIEKLGVKAYRFSISWPRILPEG-TGRVNQKGLDFYNRIIDTLLEKGITPFVTIYH-WDLPFALQLKGGWANRE  136 (443)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCHHHHSTTS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHTTTGGGSTT
T ss_pred             hHHHHHHHHHcCCCEEEccCCHHHceeCC-CCCcCHHHHHHHHHHHHHHHHcCCeeeEeecC-ccchhhhhhcCCccChH
Confidence            45799999999999999998765554321 23345689999999999999999999988887 44442        2344


Q ss_pred             CHHHHHHHHHHHHH
Q 012949          301 PPSKVAYVAKELHD  314 (452)
Q Consensus       301 d~e~l~~~a~~l~~  314 (452)
                      .++.++++|+.+.+
T Consensus       137 ~v~~F~~Ya~~v~~  150 (443)
T d2j78a1         137 IADWFAEYSRVLFE  150 (443)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55666666665443

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.26  E-value=15  Score=32.12  Aligned_cols=146  Identities=13%  Similarity=0.082  Sum_probs=94.8

Q ss_pred             hHHHHHHc-CCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHH
Q 012949          232 GFEAAIAA-GAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAK  310 (452)
Q Consensus       232 ~ie~a~~~-Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~  310 (452)
                      -++.+++. +++.|.+-....+             .++...+.+..++..|.++.  +|+=.   +....+.+.+.+..+
T Consensus        86 ll~~~~~~~~~d~iDiE~~~~~-------------~~~~~~~~~~~~~~~~~~vI--~S~H~---f~~TP~~~el~~~~~  147 (236)
T d1sfla_          86 LISDLANINGIDMIDIEWQADI-------------DIEKHQRIITHLQQYNKEVI--ISHHN---FESTPPLDELQFIFF  147 (236)
T ss_dssp             HHHHGGGCTTCCEEEEECCTTS-------------CHHHHHHHHHHHHHTTCEEE--EEEEE---SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHhcCCchhhhhhcchh-------------hHHHHHHHHHHhhcCCCEEE--EEEcC---CCCCCCHHHHHHHHH
Confidence            34445554 6899998765322             13445577899999998876  34310   122234588999999


Q ss_pred             HHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHh--CCCccEEEEeCCCcCcHHHHHHHHHHcCCCEEeecccCCCCCCC
Q 012949          311 ELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAV--VPVEKLAVHLHDTYGQSLPNILISLQMGISTVDCSVAGLGGCPY  388 (452)
Q Consensus       311 ~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~--~p~~~l~vH~Hnd~GlA~ANaLaAl~aGa~~VD~Sv~GlGecP~  388 (452)
                      .+.+.|||.+-|+=+  .-++.++.++++...+.  .+..|+-.-+=  =-++...=+.+-..|...+-+++   |+ |-
T Consensus       148 ~~~~~gaDivKia~~--~~~~~D~~~ll~~~~~~~~~~~~pii~~~M--G~~G~~sRi~~~~~GS~~tya~~---~~-~s  219 (236)
T d1sfla_         148 KMQKFNPEYVKLAVM--PHNKNDVLNLLQAMSTFSDTMDCKVVGISM--SKLGLISRTAQGVFGGALTYGCI---GE-PQ  219 (236)
T ss_dssp             HHHTTCCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHCSSEEEEEEC--TGGGHHHHHTGGGGTBCEEEEBS---SC-CS
T ss_pred             HHHHhCCCeEEEEEe--cCCHHHHHHHHHHHHHHhhccCCCEEEEec--CCcchHHHHHHHHhCCceEEccC---CC-CC
Confidence            999999999988733  34778888887765432  12335443221  12245666777788988888876   34 44


Q ss_pred             CCCCCCcccHHHHHHHHH
Q 012949          389 AKGASGNVATEDVVYMLS  406 (452)
Q Consensus       389 a~graGNaalE~vv~~L~  406 (452)
                      |   .|+.+++++-..|+
T Consensus       220 A---PGQ~~~~~lr~~l~  234 (236)
T d1sfla_         220 A---PGQIDVTDLKAQVT  234 (236)
T ss_dssp             S---TTCCBHHHHHHHHT
T ss_pred             C---CCCcCHHHHHHHHh
Confidence            4   55999999877664

>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.87  E-value=0.9  Score=44.09  Aligned_cols=93  Identities=12%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--------CCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--------EGAI  300 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--------~~r~  300 (452)
                      +++|++.+++.|++..|+.++=|-++-+  -|.=-++.++.+.++|+.+++.|++..++|.. |..|.        ..+.
T Consensus        52 y~eDi~ll~~lG~~~yRfSisWsRI~P~--~g~~n~~gl~~Y~~~i~~l~~~gI~P~VTL~H-~d~P~~l~~~gGw~~~~  128 (423)
T d1vffa1          52 YRDDIQLMTSLGYNAYRFSIEWSRLFPE--ENKFNEDAFMKYREIIDLLLTRGITPLVTLHH-FTSPLWFMKKGGFLREE  128 (423)
T ss_dssp             HHHHHHHHHHHTCCEEEEECCHHHHCSB--TTBCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTGGGSGG
T ss_pred             hHHHHHHHHHhCCCEEEecCcHHHeecC--CCccChHHHHHHHHHHHHHHhcCCeeEEeecC-CcchHHHHhhhhccCHH
Confidence            3579999999999999998765544332  13334689999999999999999999988876 44443        1233


Q ss_pred             CHHHHHHHHHHHHHCC--cC-EEEEcC
Q 012949          301 PPSKVAYVAKELHDMG--CF-EISLGD  324 (452)
Q Consensus       301 d~e~l~~~a~~l~~~G--ad-~I~L~D  324 (452)
                      .++.+.++|+.+.+.+  ++ .+.+-.
T Consensus       129 ~v~~F~~Ya~~~~~~~d~Vk~W~T~NE  155 (423)
T d1vffa1         129 NLKHWEKYIEKVAELLEKVKLVATFNE  155 (423)
T ss_dssp             GHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhhcccceeeccCC
Confidence            4566677777666665  32 555554

>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Thioglucosidase
species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]

Probab=81.85  E-value=1.3  Score=43.23  Aligned_cols=95  Identities=13%  Similarity=0.017  Sum_probs=66.7

Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCC--------CCCC
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPV--------EGAI  300 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~--------~~r~  300 (452)
                      +++|++.+++.|++..|+.++=|-++-+...+.=-++.++-+.++|+.+++.|++..++|-. |..|.        ..+-
T Consensus        59 y~eDi~l~~~lG~~~yRfSi~WsRI~P~G~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H-fd~P~~l~~~GGW~~~~  137 (462)
T d1wcga1          59 YKEDVAIIKDLNLKFYRFSISWARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYH-WDLPQYLQDLGGWVNPI  137 (462)
T ss_dssp             HHHHHHHHHHHTCSEEEEECCHHHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTGGGSTT
T ss_pred             hHHHHHHHHHhCCCEEEeeCcHHHcccCCCCCCcCHHHHHHHHHHHHHHHhcCCeeEEEecc-ccchhhhhhcCCcccHH
Confidence            35799999999999999998766654332123334789999999999999999999988887 54443        1233


Q ss_pred             CHHHHHHHHHHHHH-CC--cC-EEEEcC
Q 012949          301 PPSKVAYVAKELHD-MG--CF-EISLGD  324 (452)
Q Consensus       301 d~e~l~~~a~~l~~-~G--ad-~I~L~D  324 (452)
                      ..+.++++|+.+.+ .|  ++ ++.|..
T Consensus       138 ~v~~F~~Ya~~v~~~fgd~V~~W~T~NE  165 (462)
T d1wcga1         138 MSDYFKEYARVLFTYFGDRVKWWITFNE  165 (462)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhccccchheeeecC
Confidence            44556666665443 23  44 666655

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=81.70  E-value=4.1  Score=35.71  Aligned_cols=120  Identities=11%  Similarity=0.035  Sum_probs=67.2

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEee--ecCCCCC-CCCHHHHHH
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCV--VGCPVEG-AIPPSKVAY  307 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~--~g~p~~~-r~d~e~l~~  307 (452)
                      +.++.++++|.+.|-++..  +.........       ...++.+.+++.|+++.. ++..  +..+... ....+.+.+
T Consensus        19 e~l~~aa~~Gfd~iEl~~~--~~~~~~~~~~-------~~~~~~~~l~~~gl~i~~-~~~~~~~~~~~~~~~~~~~~~~~   88 (275)
T d2g0wa1          19 KRVKVAAENGFDGIGLRAE--NYVDALAAGL-------TDEDMLRILDEHNMKVTE-VEYITQWGTAEDRTAEQQKKEQT   88 (275)
T ss_dssp             HHHHHHHHTTCSEEEEEHH--HHHHHHHTTC-------CHHHHHHHHHHTTCEEEE-EECBCCCSSTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEccc--cccccccCcC-------CHHHHHHHHHHcCCceEE-EeeccccCCCchhHHHHHHHHHH
Confidence            5789999999999998742  2211111111       223455777889998742 2221  1101000 012345677


Q ss_pred             HHHHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHHhCCCccEEEEeCCCcCcH
Q 012949          308 VAKELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMAVVPVEKLAVHLHDTYGQS  361 (452)
Q Consensus       308 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~~~p~~~l~vH~Hnd~GlA  361 (452)
                      .++.+..+|+..|.+.-.. ...-....+.++.+.+......|.++.|+..++-
T Consensus        89 ~i~~A~~lG~~~v~~~~~~-~~~~~~~~~~l~~l~~~a~~~gi~le~~~~~~~~  141 (275)
T d2g0wa1          89 TFHMARLFGVKHINCGLLE-KIPEEQIIVALGELCDRAEELIIGLEFMPYSGVA  141 (275)
T ss_dssp             HHHHHHHHTCCEEEECCCS-CCCHHHHHHHHHHHHHHHTTSEEEEECCTTSSSC
T ss_pred             HHHHHHHhCCceEecCCCC-chHHHHHHHHHHHHHHHHHhcCeeEeeeccCCCC
Confidence            7888888899988775432 2233455555666655544445666666665543

>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-1,4-galactanase
species: Bacillus licheniformis [TaxId: 1402]

Probab=81.04  E-value=7.1  Score=36.58  Aligned_cols=124  Identities=12%  Similarity=0.035  Sum_probs=68.7

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCC---C--------C
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEG---A--------I  300 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~---r--------~  300 (452)
                      .++..+++|+..||+-+-.++..-....-..-+..++.+.+++++||+.|+.|...+-+.  ...+.   .        .
T Consensus        43 ~~~~lk~~G~n~VRl~vw~~~~~~~~~~~~~g~~~l~~~~~~~~~a~~~Gl~v~ldlH~s--d~wadp~~q~~p~~w~~~  120 (387)
T d1ur4a_          43 IFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGNNDLEKAIQIGKRATANGMKLLADFHYS--DFWADPAKQKAPKAWANL  120 (387)
T ss_dssp             HHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTCCCHHHHHHHHHHHHHTTCEEEEEECSS--SSCCSSSCCCCCGGGTTC
T ss_pred             HHHHHHHcCCCEEEeecccCCcccccCcCCCccccHHHHHHHHHHHHHCCCEEEEEeCCC--CCCcCCCCCCCchhhhcc
Confidence            578889999999998763322100000000011237788899999999999998777542  11111   0        0


Q ss_pred             CHH--------HHHHHHHHHHHCCcCE--EEEcCC--cCCC---cHHHHHHH----HHHHHHhCCCccEEEEeCCC
Q 012949          301 PPS--------KVAYVAKELHDMGCFE--ISLGDT--IGVG---TPGTVVPM----LEAVMAVVPVEKLAVHLHDT  357 (452)
Q Consensus       301 d~e--------~l~~~a~~l~~~Gad~--I~L~DT--~G~~---~P~~v~~l----i~~l~~~~p~~~l~vH~Hnd  357 (452)
                      +.+        +....++++.+.|+..  +.|..=  .|.+   ......++    ++++|+.-|...+.+|..+-
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eigNE~~~~~~~~~~~~~~~~ll~~~~~avr~~dp~~~vi~~~~~~  196 (387)
T d1ur4a_         121 NFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNP  196 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCT
T ss_pred             chhHHHHHHHHHHHHHHHHHhhcCCCccEEEEecCCCcCccCcCCHHHHHHHHHHHHHHHHhcCCCceEEEeccCc
Confidence            111        2233455666677653  444321  1222   34444444    55566666877788887764

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.98  E-value=17  Score=33.60  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=57.2

Q ss_pred             HHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHH
Q 012949          230 LQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVA  309 (452)
Q Consensus       230 ~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a  309 (452)
                      .+.++..++.|+|.|.+-+- ++              +..++.+++.+++.|++|-+.++  +. ++....+-.- .+.+
T Consensus       132 ~~q~~~l~~~gvD~il~ETm-~~--------------~~Ea~~a~~a~~~~~~Pv~~s~t--~~-~~g~l~~g~~-~e~~  192 (361)
T d1lt7a_         132 LQQLEVFMKKNVDFLIAEYF-EH--------------VEEAVWAVETLIASGKPVAATMA--IG-PEGDLHGVPP-GEAA  192 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCC-SC--------------HHHHHHHHHHHGGGSSCEEEEEC--CB-TTBSTTSCCH-HHHH
T ss_pred             HHHHHHHHhhccchhhhHHH-hh--------------HHHHHHHHHHHhhccceEEEEEE--Ec-CCCcccCCCc-HHHH
Confidence            34667778899998887643 22              24455677888999999875444  32 2222122122 2334


Q ss_pred             HHHHHCCcCEEEEcCCcCCCcHHHHHHHHHHHHH
Q 012949          310 KELHDMGCFEISLGDTIGVGTPGTVVPMLEAVMA  343 (452)
Q Consensus       310 ~~l~~~Gad~I~L~DT~G~~~P~~v~~li~~l~~  343 (452)
                      ..+.+.+++.+.+.-+.|   |..+...++.+++
T Consensus       193 ~~~~~~~~~~~g~nc~~~---p~~~~~~i~~l~~  223 (361)
T d1lt7a_         193 VRLVKAGASIIGVNCHFD---PTISLKTVKLMKE  223 (361)
T ss_dssp             HHHHHTTCSEEEEESSSC---HHHHHHHHHHHHH
T ss_pred             HHHHhcccchhhhccccc---hHhHHHHHHHHHH
Confidence            456678898888866554   6766666666665

>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Endoglucanase homologue TM1752
species: Thermotoga maritima [TaxId: 2336]

Probab=80.86  E-value=0.73  Score=41.72  Aligned_cols=61  Identities=13%  Similarity=-0.114  Sum_probs=43.8

Q ss_pred             cHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEE
Q 012949          229 YLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVS  289 (452)
Q Consensus       229 ~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~  289 (452)
                      +.++++.+++.|+..|||.+.-....-..+...-.+..++.+.++|+.|+++|+.|.+.+-
T Consensus        22 ~e~d~~~l~~~G~n~vRlpv~~~~~~~~~~~~~~~~~~l~~ld~~v~~~~~~gi~vildlH   82 (325)
T d1vjza_          22 KEEDFLWMAQWDFNFVRIPMCHLLWSDRGNPFIIREDFFEKIDRVIFWGEKYGIHICISLH   82 (325)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEGGGTSCSSCTTCCCGGGHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CHHHHHHHHHcCCCEEEecccHHHccCCCCCCccCHHHHHHHHHHHHHHHHcCCcEEEeec
Confidence            3469999999999999998754332211122222346789999999999999999976553

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=80.78  E-value=3.4  Score=37.19  Aligned_cols=82  Identities=22%  Similarity=0.214  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcC---CCcHHHHHHHHHHHHHhCC-CccEEEEe-CCCcCcHHHHHHHHHHcC
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIG---VGTPGTVVPMLEAVMAVVP-VEKLAVHL-HDTYGQSLPNILISLQMG  372 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~li~~l~~~~p-~~~l~vH~-Hnd~GlA~ANaLaAl~aG  372 (452)
                      +..|.+.+.+.++.+.+.|++.|.+.-|+|   .+++++-.++++.+.+... ..++-+++ +....-++..+..|.++|
T Consensus        19 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   98 (292)
T d1xkya1          19 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG   98 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             cCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcC
Confidence            468999999999999999999999999988   4688888888988888763 34566654 455666788899999999


Q ss_pred             CCEEeec
Q 012949          373 ISTVDCS  379 (452)
Q Consensus       373 a~~VD~S  379 (452)
                      |+.|-..
T Consensus        99 ad~ilv~  105 (292)
T d1xkya1          99 VDAVMLV  105 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9988765

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.75  E-value=2.8  Score=36.72  Aligned_cols=108  Identities=10%  Similarity=-0.026  Sum_probs=64.0

Q ss_pred             hHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCCHHHHHHHHHH
Q 012949          232 GFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIPPSKVAYVAKE  311 (452)
Q Consensus       232 ~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d~e~l~~~a~~  311 (452)
                      .++.++++|++.|-+...   .      ..+.    ..+.++.+.+++.|+++.......+..+..  ...+.+.+.++.
T Consensus        24 ~l~~~a~~G~dgIEi~~~---~------~~~~----~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~--~~~~~~~~~i~~   88 (250)
T d1yx1a1          24 FLPLLAMAGAQRVELREE---L------FAGP----PDTEALTAAIQLQGLECVFSSPLELWREDG--QLNPELEPTLRR   88 (250)
T ss_dssp             GHHHHHHHTCSEEEEEGG---G------CSSC----CCHHHHHHHHHHTTCEEEEEEEEEEECTTS--SBCTTHHHHHHH
T ss_pred             HHHHHHHhCCCEEEEecc---c------CCCc----chHHHHHHHHHHcCCEEEEecccccccCch--hhHHHHHHHHHH
Confidence            578899999999988521   1      0111    112355677888999975333222111111  223567788888


Q ss_pred             HHHCCcCEEEEcCCcCCCc-HHHHHHHHHHHHHhCCCccEEEEeCCCc
Q 012949          312 LHDMGCFEISLGDTIGVGT-PGTVVPMLEAVMAVVPVEKLAVHLHDTY  358 (452)
Q Consensus       312 l~~~Gad~I~L~DT~G~~~-P~~v~~li~~l~~~~p~~~l~vH~Hnd~  358 (452)
                      +.+.|+..|.+.  .|... .+.+.++.+..++ .+ +.|.+|.|.+.
T Consensus        89 A~~LG~~~v~~~--~g~~~~~~~l~~l~~~a~~-~G-v~l~iE~h~~~  132 (250)
T d1yx1a1          89 AEACGAGWLKVS--LGLLPEQPDLAALGRRLAR-HG-LQLLVENDQTP  132 (250)
T ss_dssp             HHHTTCSEEEEE--EECCCSSCCHHHHHHHHTT-SS-CEEEEECCSSH
T ss_pred             HHHhCCCEEEEe--ecccchhHHHHHHHHHHHH-cC-CEEEEEeCCCc
Confidence            889999988763  12222 2335555444433 44 58999999764

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=80.74  E-value=8.7  Score=35.52  Aligned_cols=138  Identities=14%  Similarity=0.105  Sum_probs=79.5

Q ss_pred             HhHHHHHHcCCCEEEEEec--------CChHHHhh--hcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEEeeecCCCC
Q 012949          231 QGFEAAIAAGAKEVAIFAS--------ASEAFSKS--NINCSIEDSLVRYRAVAHAAKVL-S--IPVRGYVSCVVGCPVE  297 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s--------~Sd~~~~~--~~~~s~e~~l~~~~~~v~~Ak~~-G--~~V~~~l~~~~g~p~~  297 (452)
                      +..++|.++|.|.|.|-.+        .|+..++.  .+|-|.|+=.+-+.++++.+|+. |  +.|.+-++..- ....
T Consensus       153 ~aA~~a~~aGfDgVEih~ahGyLl~qFls~~~N~R~D~yGGs~enR~Rf~~EIi~aIr~~vg~~~~i~~R~s~~~-~~~~  231 (340)
T d1djqa1         153 DAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDT-VYGP  231 (340)
T ss_dssp             HHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEEC-SSCT
T ss_pred             HHHHHHHHhccceeeeeccccchhhhhhhhccccccccccccHHhhhHHHHHHHHHHHHHHhhhhhceeeccccc-cccC
Confidence            3567788899999888653        23333322  36778888888888888887763 3  34443344321 1111


Q ss_pred             CCCCHHHHHHHHHHHHHCCcCEEEEcCCcCC-------------CcHHHHHHHHHHHHHhCCCccEE-EEeCCCcCcHHH
Q 012949          298 GAIPPSKVAYVAKELHDMGCFEISLGDTIGV-------------GTPGTVVPMLEAVMAVVPVEKLA-VHLHDTYGQSLP  363 (452)
Q Consensus       298 ~r~d~e~l~~~a~~l~~~Gad~I~L~DT~G~-------------~~P~~v~~li~~l~~~~p~~~l~-vH~Hnd~GlA~A  363 (452)
                      +..+.+.-...+..+.+.|+|.+.+  +.|.             ..+....++.+.+|+.+.. +|- +..-.|    ..
T Consensus       232 ~~~~~e~~~~~~~~l~~~~vd~~~v--s~g~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pVi~~G~i~~----~~  304 (340)
T d1djqa1         232 GQIEAEVDGQKFVEMADSLVDMWDI--TIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQVSKK-PVLGVGRYTD----PE  304 (340)
T ss_dssp             TSCCTTTHHHHHHHHHTTTCSEEEE--EESCSTTGGGTSCCTTTCCTTTTHHHHHHHHTTCSS-CEEECSCCCC----HH
T ss_pred             CCCchhhhHHHHHHHHhhccceeee--eecccccccccccccccCCccccHHHHHHHHHHcCC-eEEEECCCCC----HH
Confidence            2333443444556677889987765  2221             1122244567777777653 333 322222    35


Q ss_pred             HHHHHHHcC-CCEE
Q 012949          364 NILISLQMG-ISTV  376 (452)
Q Consensus       364 NaLaAl~aG-a~~V  376 (452)
                      .+..+|+.| ||.|
T Consensus       305 ~a~~~l~~G~aDlV  318 (340)
T d1djqa1         305 KMIEIVTKGYADII  318 (340)
T ss_dssp             HHHHHHHTTSCSBE
T ss_pred             HHHHHHHCCCccch
Confidence            667788888 7765

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.73  E-value=17  Score=34.00  Aligned_cols=181  Identities=17%  Similarity=0.130  Sum_probs=109.5

Q ss_pred             CHHHHHHHHHHHHHCCCCEEEEecC---CCCCcccccCCHHHHHHHHHhcc-CCceeEEecchhhhhhhhhhhhhccchh
Q 012949          146 PTGVKVELIRRLVSSGLPVVEATSF---VSPKWVPQLADARDVMEAVRDLE-GARLPVLTPNLKVILQRSILFQQCHASV  221 (452)
Q Consensus       146 ~~~~k~~i~~~L~~~Gv~~IEvG~~---~s~~~~p~~~D~e~v~~~i~~~~-~~~l~~l~~~~~~~i~r~~~~~~~~~~~  221 (452)
                      +.++..++++.+.++|.+.+--|.|   .+|.-...+.  ++=++.++++. ...+++++.-..                
T Consensus       106 S~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g--~~gL~~l~~~k~~~glpvvTdV~~----------------  167 (338)
T d1vr6a1         106 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG--EKGLEYLREAADKYGMYVVTEALG----------------  167 (338)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT--HHHHHHHHHHHHHHTCEEEEECSS----------------
T ss_pred             CHHHHHHHHHHHHHhCccccccceecccccccccccch--HHHHHHHHHHHhhcCceeEEeccc----------------
Confidence            6788899999999999999888876   2443222222  33344444321 123444442211                


Q ss_pred             hhhhhhccHHhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEEeeecCCCCCCCC
Q 012949          222 ISSNLWVYLQGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYVSCVVGCPVEGAIP  301 (452)
Q Consensus       222 i~~~~~~~~~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l~~~~g~p~~~r~d  301 (452)
                              ..+++.+.+. +|.+.|....     ..|            .++++.+-+.|.+|-  |.--      --.+
T Consensus       168 --------~~~~~~~~e~-~DilQI~A~~-----~~n------------~~LL~~~g~t~kpV~--lKkG------~~~s  213 (338)
T d1vr6a1         168 --------EDDLPKVAEY-ADIIQIGARN-----AQN------------FRLLSKAGSYNKPVL--LKRG------FMNT  213 (338)
T ss_dssp             --------GGGHHHHHHH-CSEEEECGGG-----TTC------------HHHHHHHHTTCSCEE--EECC------TTCC
T ss_pred             --------hhhhhhhhce-eeeEEechhh-----ccC------------HHHHHHhhccCCcEE--ecCc------cccc
Confidence                    1367777665 8988886432     111            245566667788765  4421      1357


Q ss_pred             HHHHHHHHHHHHHCCcCEEEEcCCcCCCcH----H---HHHHHHHHHHHhCCCccEEE---EeCCCcCcHHHHHHHHHHc
Q 012949          302 PSKVAYVAKELHDMGCFEISLGDTIGVGTP----G---TVVPMLEAVMAVVPVEKLAV---HLHDTYGQSLPNILISLQM  371 (452)
Q Consensus       302 ~e~l~~~a~~l~~~Gad~I~L~DT~G~~~P----~---~v~~li~~l~~~~p~~~l~v---H~Hnd~GlA~ANaLaAl~a  371 (452)
                      ++.+...++.+...|-..|.||.- |..+.    .   ++. -+..+++. +..|+-+   |.=.+.-+...-+.+|+.+
T Consensus       214 ~~e~l~aae~i~~~Gn~~vilcER-G~~t~~~~~~~~lD~~-~i~~~k~~-~~lPVi~DpsHs~G~r~~v~~larAAvA~  290 (338)
T d1vr6a1         214 IEEFLLSAEYIANSGNTKIILCER-GIRTFEKATRNTLDIS-AVPIIRKE-SHLPILVDPSHSGGRRDLVIPLSRAAIAV  290 (338)
T ss_dssp             HHHHHHHHHHHHHTTCCCEEEEEC-CBCCSCCSSSSBCCTT-HHHHHHHH-BSSCEEECHHHHHCSGGGHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHhcCCccceeeec-cccccccccccchhhc-ccceeecc-ccCceeeCCCCCCCchhHHHHHHHHHHHh
Confidence            899999999999999998888874 22111    0   112 23344443 2234554   6555666777889999999


Q ss_pred             CCC--EEeeccc
Q 012949          372 GIS--TVDCSVA  381 (452)
Q Consensus       372 Ga~--~VD~Sv~  381 (452)
                      |||  .|++=-.
T Consensus       291 GadGl~iE~Hp~  302 (338)
T d1vr6a1         291 GAHGIIVEVHPE  302 (338)
T ss_dssp             TCSEEEEEBCSC
T ss_pred             CCCEEEEEeCCC
Confidence            999  5565443

>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-mannanase
species: Bacillus sp. JAMB-602 [TaxId: 244966]

Probab=80.18  E-value=14  Score=32.33  Aligned_cols=50  Identities=20%  Similarity=0.205  Sum_probs=38.9

Q ss_pred             HhHHHHHHcCCCEEEEEecCChHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 012949          231 QGFEAAIAAGAKEVAIFASASEAFSKSNINCSIEDSLVRYRAVAHAAKVLSIPVRGYV  288 (452)
Q Consensus       231 ~~ie~a~~~Gi~~V~i~~s~Sd~~~~~~~~~s~e~~l~~~~~~v~~Ak~~G~~V~~~l  288 (452)
                      ++++.+++.|+..||+.+.-...+.        ++.++++.++++.|.++|+.|...+
T Consensus        36 ~d~~~~~~~G~N~VRl~~~~~~~~~--------~~~~~~ld~~v~~a~~~Gi~vildl   85 (297)
T d1wkya2          36 TAIEGIANTGANTVRIVLSDGGQWT--------KDDIQTVRNLISLAEDNNLVAVLEV   85 (297)
T ss_dssp             HHHHHHHTTTCSEEEEEECCSSSSC--------CCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHCCCcEEEEeccCCCccC--------ccHHHHHHHHHHHHHHCCCceEeec
Confidence            5899999999999999876544321        2346778889999999999987555