Citrus Sinensis ID: 012976
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FE59 | 510 | Sucrose transport protein | yes | no | 0.935 | 0.829 | 0.724 | 0.0 | |
| A2ZN77 | 501 | Sucrose transport protein | N/A | no | 0.893 | 0.806 | 0.659 | 1e-158 | |
| Q0ILJ3 | 501 | Sucrose transport protein | yes | no | 0.896 | 0.808 | 0.658 | 1e-157 | |
| Q39231 | 512 | Sucrose transport protein | no | no | 0.938 | 0.828 | 0.509 | 1e-122 | |
| Q67YF8 | 491 | Sucrose transport protein | no | no | 0.898 | 0.826 | 0.518 | 1e-120 | |
| Q9FG00 | 491 | Sucrose transport protein | no | no | 0.933 | 0.859 | 0.501 | 1e-118 | |
| Q39232 | 513 | Sucrose transport protein | no | no | 0.949 | 0.836 | 0.504 | 1e-117 | |
| Q9ZVK6 | 492 | Sucrose transport protein | no | no | 0.915 | 0.841 | 0.523 | 1e-117 | |
| Q6A329 | 492 | Putative sucrose transpor | no | no | 0.935 | 0.859 | 0.514 | 1e-116 | |
| Q03411 | 525 | Sucrose transport protein | N/A | no | 0.922 | 0.794 | 0.535 | 1e-116 |
| >sp|Q9FE59|SUC4_ARATH Sucrose transport protein SUC4 OS=Arabidopsis thaliana GN=SUC4 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/439 (72%), Positives = 364/439 (82%), Gaps = 16/439 (3%)
Query: 3 QDERQR--------SKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLL 54
QD R R ++ S+SR V PP R+KV R LL+VASVA GIQFGWALQLSLL
Sbjct: 6 QDRRHRVTRNRPPIARPSTSSSRPVVSPP-RSKVSKRVLLRVASVACGIQFGWALQLSLL 64
Query: 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114
TPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH SDRCTS++GRRRPFIV GA++I+++
Sbjct: 65 TPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSSDRCTSKYGRRRPFIVAGAVAISIS 124
Query: 115 VLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHR 173
V++IG +ADIGW GDR G +PRAI FV GFWILDVANNMTQGPCRALLADLT D+R
Sbjct: 125 VMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWILDVANNMTQGPCRALLADLTENDNR 184
Query: 174 RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233
RTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT T ACNV+CANLKSAF++DV+FIA
Sbjct: 185 RTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFTKTVACNVECANLKSAFYIDVVFIA 244
Query: 234 ITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIV 293
ITT +S SAAHEVPL S + E H Q+S EAFL E+FGTFRYF G +WIIL+V
Sbjct: 245 ITTILSVSAAHEVPLAS------LASEAHGQTSGTDEAFLSEIFGTFRYFPGNVWIILLV 298
Query: 294 TALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353
TALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+ GV MGALGLMLNSV LGITSVLME
Sbjct: 299 TALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSAGVSMGALGLMLNSVFLGITSVLME 358
Query: 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILG 413
KLCRKWGAGF+WGISNILMA+CFL M+I +VA H+ Y GH+ PP IV AA++IFTILG
Sbjct: 359 KLCRKWGAGFVWGISNILMAICFLGMIITSFVASHLGYIGHEQPPASIVFAAVLIFTILG 418
Query: 414 GPLAITYSVPYALVSIRTE 432
PLAITYSVPYAL+SIR E
Sbjct: 419 IPLAITYSVPYALISIRIE 437
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|A2ZN77|SUT2_ORYSI Sucrose transport protein SUT2 OS=Oryza sativa subsp. indica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 556 bits (1434), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/423 (65%), Positives = 338/423 (79%), Gaps = 19/423 (4%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE-VPLGSHDQSAPFSE 259
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E LGS + P +E
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQEPQSLGSDEADHPSTE 260
Query: 260 EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
+ EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 261 Q---------EAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRG 311
Query: 320 EPNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF 376
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF
Sbjct: 312 SPDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCF 371
Query: 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436
+AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGL
Sbjct: 372 VAMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGL 431
Query: 437 GQG 439
GQG
Sbjct: 432 GQG 434
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q0ILJ3|SUT2_ORYSJ Sucrose transport protein SUT2 OS=Oryza sativa subsp. japonica GN=SUT2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 555 bits (1430), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/422 (65%), Positives = 336/422 (79%), Gaps = 17/422 (4%)
Query: 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLV 86
KVPLRKLL+ ASVA G+QFGWALQLSLLTPYVQELGIPHA+AS++WLCGP+SGL VQPLV
Sbjct: 21 KVPLRKLLRAASVACGVQFGWALQLSLLTPYVQELGIPHAFASLVWLCGPLSGLLVQPLV 80
Query: 87 GHFSDR---CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR---GDFRPRAIA 140
GH SDR S GRRRPFI GA SIA AVL +G SAD+G + GD G R AI
Sbjct: 81 GHLSDRIAPAASPLGRRRPFIAAGAASIAAAVLTVGFSADLGRIFGDSITPGSTRLGAII 140
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
V++ GFW+LDV NN TQGPCRA LADLT D RRTR+ANAYFSLFMA+GNILGYATG++S
Sbjct: 141 VYLVGFWLLDVGNNATQGPCRAFLADLTENDPRRTRIANAYFSLFMALGNILGYATGAYS 200
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
GW+KI PFT+T +C++ CANLKSAF LD+I + +TTCI+ ++ E QS F +
Sbjct: 201 GWYKIFPFTVTPSCSISCANLKSAFLLDIIILVVTTCITVASVQE------PQS--FGSD 252
Query: 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGE 320
+ S EAFLWELFG+FRYF+ +W++LIVTALTW+GWFPF+LFDTDWMGREIY G
Sbjct: 253 EADHPSTEQEAFLWELFGSFRYFTLPVWMVLIVTALTWIGWFPFILFDTDWMGREIYRGS 312
Query: 321 PNE---GQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFL 377
P++ Q+Y GVRMG+ GLMLNSV+LG TS+++EKLCRKWGAG +WG+SNILMALCF+
Sbjct: 313 PDDPSITQSYHDGVRMGSFGLMLNSVLLGFTSIVLEKLCRKWGAGLVWGVSNILMALCFV 372
Query: 378 AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437
AML++ YVA +MDY +PP GIVIA+L++FTILG PLAITYS+PYA+ + R E+LGLG
Sbjct: 373 AMLVITYVAKNMDYPPSGVPPTGIVIASLVVFTILGAPLAITYSIPYAMAASRVENLGLG 432
Query: 438 QG 439
QG
Sbjct: 433 QG 434
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). May also transport other glucosides. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q39231|SUC2_ARATH Sucrose transport protein SUC2 OS=Arabidopsis thaliana GN=SUC2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 439 bits (1130), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/451 (50%), Positives = 295/451 (65%), Gaps = 27/451 (5%)
Query: 2 PQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL 61
P ++ S T P R LRK++ V+S+A G+QFGWALQLSLLTPYVQ L
Sbjct: 5 PMEKAANGASALETQTGELDQPER----LRKIISVSSIAAGVQFGWALQLSLLTPYVQLL 60
Query: 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121
GIPH WAS+IWLCGP+SG+ VQP+VG+ SDRCTSRFGRRRPFIV GA + VAV LIG +
Sbjct: 61 GIPHKWASLIWLCGPISGMLVQPIVGYHSDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYA 120
Query: 122 ADIGWLLGDRGDFRP--RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
ADIG +GD+ D P RAIA+F GFWILDVANN QGPCRA LADL+ + ++TR AN
Sbjct: 121 ADIGHSMGDQLDKPPKTRAIAIFALGFWILDVANNTLQGPCRAFLADLSAGNAKKTRTAN 180
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
A+FS FMAVGN+LGYA GS+ +K++PFT+T +C++ CANLK+ FFL + + I T +S
Sbjct: 181 AFFSFFMAVGNVLGYAAGSYRNLYKVVPFTMTESCDLYCANLKTCFFLSITLLLIVTFVS 240
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
E P++ E + F E+FG F+ +W++LIVTAL W+
Sbjct: 241 LCYVKE---------KPWTPEPTADGKASNVPFFGEIFGAFKELKRPMWMLLIVTALNWI 291
Query: 300 GWFPFLLFDTDWMGREIYGGEPN------EGQNYATGVRMGALGLMLNSVVLGITSVLME 353
WFPFLLFDTDWMGRE+YGG + + Y GVR GALGLMLN++VLG S+ +E
Sbjct: 292 AWFPFLLFDTDWMGREVYGGNSDATATAASKKLYNDGVRAGALGLMLNAIVLGFMSLGVE 351
Query: 354 KLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGH----DLPPNGIVIAALII 408
+ RK GA +WGI N ++A+C LAM ++ R H PP + AL +
Sbjct: 352 WIGRKLGGAKRLWGIVNFILAIC-LAMTVVVTKQAENHRRDHGGAKTGPPGNVTAGALTL 410
Query: 409 FTILGGPLAITYSVPYALVSIRTESLGLGQG 439
F ILG P AIT+S+P+AL SI + + G GQG
Sbjct: 411 FAILGIPQAITFSIPFALASIFSTNSGAGQG 441
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Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport other glucosides such as maltose, arbutin (hydroquinone-beta-D-glucoside), salicin (2-(hydroxymethyl)phenyl-beta-D-glucoside), alpha-phenylglucoside, beta-phenylglucoside, alpha-paranitrophenylglucoside, beta-paranitrophenylglucoside, and paranitrophenyl-beta-thioglucoside. May also transport biotin. Required for apoplastic phloem sucrose loading in source tissues (e.g leaves) in order to transport it to sink tissues (e.g. roots, flowers). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q67YF8|SUC7_ARATH Sucrose transport protein SUC7 OS=Arabidopsis thaliana GN=SUC7 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 433 bits (1114), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/434 (51%), Positives = 297/434 (68%), Gaps = 28/434 (6%)
Query: 4 DERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI 63
++ + + R S+S P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+
Sbjct: 7 NKDETTVDRQSSSSVDLDGPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGV 62
Query: 64 PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123
PH W S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD
Sbjct: 63 PHKWPSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAAD 122
Query: 124 IGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY 181
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+
Sbjct: 123 FGHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAF 182
Query: 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241
FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALW 242
Query: 242 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGW 301
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ W
Sbjct: 243 YVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAW 291
Query: 302 FPFLLFDTDWMGREIYGGEPNEGQN-----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
FPFLL+DTDWMGRE+YGG+ ++G + Y G+ +GALGLMLNS+VLG+ S+ +E +
Sbjct: 292 FPFLLYDTDWMGREVYGGD-SKGDDKMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGIS 350
Query: 357 RKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTIL 412
RK GA +WG NI++A+C LAM +L R LP +GI AL +F +L
Sbjct: 351 RKMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALL 409
Query: 413 GGPLAITYSVPYAL 426
G PLAIT+S+P+AL
Sbjct: 410 GIPLAITFSIPFAL 423
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG00|SUC9_ARATH Sucrose transport protein SUC9 OS=Arabidopsis thaliana GN=SUC9 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 426 bits (1094), Expect = e-118, Method: Compositional matrix adjust.
Identities = 223/445 (50%), Positives = 298/445 (66%), Gaps = 23/445 (5%)
Query: 3 QDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+++ ++S+S V P+ PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 7 KEDAAPVDRQSSSSVVVPDEPS----PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGP+SGL VQP VG+FSDRC SRFGRRRPFI GA+ +A+AV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPISGLLVQPTVGYFSDRCKSRFGRRRPFIATGALLVALAVILIGFAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ FV GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHTMGDKLDEAVKIRAVGFFVVGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
FS FMAVGN+LGYA GS++ KI PFT+T AC++ CANLKS F + + + + T I+
Sbjct: 183 IFSFFMAVGNVLGYAAGSYTNLHKIFPFTVTKACDIYCANLKSCFIISITLLIVLTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++L VTAL W+
Sbjct: 243 WYVED------KQWSPNADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLAVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ Y G+++G+LGLMLNS+VLG+ S+++ +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSAGDDKMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVIS 351
Query: 357 RKWGAGFIWGISNILMALCF-LAMLILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGG 414
+K GA +WG NI++A+C + +L+ H G LP N I AL +F ILG
Sbjct: 352 KKIGAKRLWGAVNIILAVCLAMTVLVTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGI 411
Query: 415 PLAITYSVPYALVSIRTESLGLGQG 439
PLAIT+S+P+AL SI + S G GQG
Sbjct: 412 PLAITFSIPFALASIISSSSGAGQG 436
|
High-affinity sucrose transporter. Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport a wide range of glucosides, such as helicin, salicin, arbutin, maltose, fraxin, esculin, uranose, alpha-methylglucoside, alpha-phenylglucoside and beta-phenylglucoside. Plays a role in flowering time transition delay. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q39232|SUC1_ARATH Sucrose transport protein SUC1 OS=Arabidopsis thaliana GN=SUC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust.
Identities = 224/444 (50%), Positives = 291/444 (65%), Gaps = 15/444 (3%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
E ++ A+ + PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIP
Sbjct: 5 ETEKPTKDAAALETQSPEDFDQPSPLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S+IWLCGPVSG+ VQP+VG SDRC S+FGRRRPFI GA +AVAV LIG +AD
Sbjct: 65 HKWSSLIWLCGPVSGMIVQPIVGFHSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADF 124
Query: 125 GWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G+ +GD+ + RAI +F GFWILDVANN QGPCRA LADL D +RTRVANA+F
Sbjct: 125 GYKMGDKLEEKVKVRAIGIFALGFWILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ K+ PFT+T AC++ CANLK+ FFL + + I T S
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLHKMFPFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
++ P + + E++S V E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VND----KQWSPPPRNADDDEKTSSV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 298
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLLFDTDWMGRE++GG+ + + Y+ GV+ GA+GLM NS+VLG S+ +E + RK
Sbjct: 299 PFLLFDTDWMGREVFGGDSDGNERSKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRK 358
Query: 359 W-GAGFIWGISN-ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGP 415
GA +WGI N IL A + +L+ + H G P+ V A AL +F +LG P
Sbjct: 359 LGGAKRLWGIVNFILAAGLAMTVLVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIP 418
Query: 416 LAITYSVPYALVSIRTESLGLGQG 439
LAIT+S P+AL SI + G GQG
Sbjct: 419 LAITFSTPFALASIFSSCSGAGQG 442
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). This transport is both voltage- and energy-dependent. Can also transport other glucosides such as maltose, alpha-phenylglucoside and beta-phenylglucoside. May also transport biotin. Required for normal pollen germination and anthocyanin accumulation induced by sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZVK6|SUC8_ARATH Sucrose transport protein SUC8 OS=Arabidopsis thaliana GN=SUC8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 233/445 (52%), Positives = 298/445 (66%), Gaps = 31/445 (6%)
Query: 5 ERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
+RQ S S A PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+P
Sbjct: 14 DRQSSSSLADLD---------GPSPLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVP 64
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H W+S IWLCGPVSGL VQP VG+FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD
Sbjct: 65 HKWSSFIWLCGPVSGLLVQPSVGYFSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADF 124
Query: 125 GWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182
G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA+F
Sbjct: 125 GHSMGDKIDKPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFF 184
Query: 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242
S FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 185 SFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWY 244
Query: 243 AHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWF 302
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+ WF
Sbjct: 245 VED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWF 293
Query: 303 PFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358
PFLL+DTDWMGRE+YGG+ Y G+ +GALGLMLNS+VLGI S+ +E + +K
Sbjct: 294 PFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKK 353
Query: 359 W-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTILGG 414
GA +WG NI++A+C LAM +L R LP +GI AL +F +LG
Sbjct: 354 IGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGI 412
Query: 415 PLAITYSVPYALVSIRTESLGLGQG 439
PLAIT+S+P+AL SI + S G GQG
Sbjct: 413 PLAITFSIPFALASIISSSSGAGQG 437
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. May also transport biotin. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6A329|SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2 | Back alignment and function description |
|---|
Score = 419 bits (1077), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/447 (51%), Positives = 299/447 (66%), Gaps = 24/447 (5%)
Query: 5 ERQRSKSRASTSRAVARPPA--RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG 62
+ Q +K A+ +R + A P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG
Sbjct: 3 DLQANKDAAAVNRQSSSSSADLNGPSPMRKMISVASIAAGIQFGWALQLSLLTPYVQLLG 62
Query: 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122
+PH W+S IWLCGPVSGL VQP VG+FSDRC SRFGRRRPFI GA+ +AVAV+LIG +A
Sbjct: 63 VPHKWSSFIWLCGPVSGLLVQPSVGYFSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAA 122
Query: 123 DIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
D G +GD+ D + RA+ +F GFWILDVANN QGPCRA L DL D ++TR ANA
Sbjct: 123 DFGHSMGDKVDEPVKMRAVVIFALGFWILDVANNTLQGPCRAFLGDLAAGDAKKTRTANA 182
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
+FS FMAVGN+LGYA GS++ +KI PFT+T AC++ CANLKS FFL + + + T I+
Sbjct: 183 FFSFFMAVGNVLGYAAGSYTNLYKIFPFTMTKACDIYCANLKSCFFLSITLLLVVTIIAL 242
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+ Q +P ++ +E++ F E+FG F+ +W++LIVTAL W+
Sbjct: 243 WYVED------KQWSPKADSDNEKTP-----FFGEIFGAFKVMKRPMWMLLIVTALNWIA 291
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQN----YATGVRMGALGLMLNSVVLGITSVLMEKLC 356
WFPFLL+DTDWMGRE+YGG+ Y G+ +G LGLMLNS+VLG S+ +E +
Sbjct: 292 WFPFLLYDTDWMGREVYGGDSKGDDKMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGIS 351
Query: 357 RKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYR---GHDLPPNGIVIAALIIFTIL 412
RK GA +WG NI++A+C LAM +L R LP +GI AL +F +L
Sbjct: 352 RKMGGAKRLWGAVNIILAVC-LAMTVLVTKKAEEHRRIAGPMALPTDGIRAGALTLFALL 410
Query: 413 GGPLAITYSVPYALVSIRTESLGLGQG 439
G PLAIT+S+P+AL SI + S G GQG
Sbjct: 411 GIPLAITFSIPFALASIISSSSGAGQG 437
|
May be responsible for the transport of glucosides into the cell, with the concomitant uptake of protons (symport system). Does not seem to transport sucrose. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q03411|SUT_SPIOL Sucrose transport protein OS=Spinacia oleracea PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 229/428 (53%), Positives = 286/428 (66%), Gaps = 11/428 (2%)
Query: 23 PARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFV 82
P A+ L+KL VASVA G+QFGWALQLSLLTPYVQ LGIPH WA+ IWLCGP+SG+ V
Sbjct: 28 PPEAEATLKKLGLVASVAAGVQFGWALQLSLLTPYVQLLGIPHTWAAYIWLCGPISGMIV 87
Query: 83 QPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD-RGDF-RPRAIA 140
QPLVG++SDRCTSRFGRRRPFI GA +AVAV LIG +ADIG GD G+ +PRAIA
Sbjct: 88 QPLVGYYSDRCTSRFGRRRPFIAAGAALVAVAVGLIGFAADIGAASGDPTGNVAKPRAIA 147
Query: 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200
VFV GFWILDVANN QGPCRALLAD+ +TR ANA+FS FMA+GNI GYA GS+S
Sbjct: 148 VFVVGFWILDVANNTLQGPCRALLADMAAGSQTKTRYANAFFSFFMALGNIGGYAAGSYS 207
Query: 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260
+ + PFT T+AC+V CANLKS FF+ + + + T ++ S E + + +
Sbjct: 208 RLYTVFPFTKTAACDVYCANLKSCFFISITLLIVLTILALSVVKERQITIDEIQEEEDLK 267
Query: 261 GHEQSSDVHE-AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGG 319
SS F +L G + + I+L+VTAL W+ WFPFLLFDTDWMG+E+YGG
Sbjct: 268 NRNNSSGCARLPFFGQLIGALKDLPKPMLILLLVTALNWIAWFPFLLFDTDWMGKEVYGG 327
Query: 320 EPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCFLA 378
EG+ Y GV GALGLM+NSVVLG+ S+ +E L R GA +WGI NI++A+C
Sbjct: 328 TVGEGKLYDQGVHAGALGLMINSVVLGVMSLSIEGLARMVGGAKRLWGIVNIILAVCLAM 387
Query: 379 MLILYYVAIHMDYRGHDLPP-------NGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
+++ A H H + G+ AL IF +LG PLAIT+S+P+AL SI +
Sbjct: 388 TVLVTKSAEHFRDSHHIMGSAVPPPPPAGVKGGALAIFAVLGIPLAITFSIPFALASIFS 447
Query: 432 ESLGLGQG 439
S G GQG
Sbjct: 448 ASSGSGQG 455
|
Responsible for the transport of sucrose into the cell, with the concomitant uptake of protons (symport system). Can also transport maltose at a lesser rate. Spinacia oleracea (taxid: 3562) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| 49609488 | 498 | putative sucrose-H+ symporter [Datisca g | 0.946 | 0.859 | 0.801 | 0.0 | |
| 118132677 | 498 | sucrose transporter 4 [Hevea brasiliensi | 0.946 | 0.859 | 0.789 | 0.0 | |
| 224063331 | 510 | sucrose proton symporter [Populus tricho | 0.946 | 0.839 | 0.763 | 0.0 | |
| 38327323 | 499 | sucrose transporter [Malus x domestica] | 0.955 | 0.865 | 0.765 | 0.0 | |
| 74476785 | 496 | sucrose transporter type 4 [Manihot escu | 0.942 | 0.858 | 0.768 | 0.0 | |
| 225458976 | 501 | PREDICTED: sucrose transport protein SUC | 0.957 | 0.864 | 0.776 | 0.0 | |
| 5882292 | 501 | sucrose transporter [Vitis vinifera] | 0.957 | 0.864 | 0.774 | 0.0 | |
| 321531554 | 510 | sucrose transporter 4 [Populus tremula x | 0.946 | 0.839 | 0.754 | 0.0 | |
| 6434829 | 501 | putative sucrose transporter [Vitis vini | 0.957 | 0.864 | 0.772 | 0.0 | |
| 395618811 | 507 | sucrose transport protein SUF4 [Pisum sa | 0.964 | 0.859 | 0.740 | 0.0 |
| >gi|49609488|emb|CAG70682.1| putative sucrose-H+ symporter [Datisca glomerata] | Back alignment and taxonomy information |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/428 (80%), Positives = 377/428 (88%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
A RA ARPP +A+V LRKLL+V+SVA GIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 EADRHRARARPPVQARVSLRKLLRVSSVACGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGLFVQPLVGH SDRCTSRFGRRRPFIV GA+SI VAVL+IG SADIG L+GDR
Sbjct: 65 WLCGPLSGLFVQPLVGHMSDRCTSRFGRRRPFIVVGALSITVAVLIIGYSADIGSLIGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G +P AIA FV GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN+
Sbjct: 125 GTVKPGAIATFVVGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNV 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATGS+SGWFKI P TLTSACNV+CANLKSAF LD++FIAITT +S SAA E PL
Sbjct: 185 LGYATGSYSGWFKIFPLTLTSACNVNCANLKSAFLLDIVFIAITTYLSISAAQESPLDPT 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+SA +EEG SS EAFLWELFG FRYFS +IW+I VTALTW+GWFPFLLFDTDW
Sbjct: 245 DRSANITEEGPGPSSHTEEAFLWELFGAFRYFSASIWVIFFVTALTWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY+TGVRMGALGLMLNSVVLGITSVLMEKLCR WGAGF+WG+SNIL
Sbjct: 305 MGREIYGGKPNEGQNYSTGVRMGALGLMLNSVVLGITSVLMEKLCRYWGAGFVWGVSNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
M+LCFLAML++ +VA +DY GH LPP+ IV+AAL+IF ILG PLAITYSVPYAL+S R
Sbjct: 365 MSLCFLAMLVVTFVAKRIDYIGHKLPPDVIVVAALVIFAILGIPLAITYSVPYALISTRI 424
Query: 432 ESLGLGQG 439
ESLGLGQG
Sbjct: 425 ESLGLGQG 432
|
Source: Datisca glomerata Species: Datisca glomerata Genus: Datisca Family: Datiscaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118132677|gb|ABK60191.1| sucrose transporter 4 [Hevea brasiliensis] | Back alignment and taxonomy information |
|---|
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/428 (78%), Positives = 367/428 (85%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V SVAGGIQFGWALQLSLLTPYVQELGIPH WASII
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSVAGGIQFGWALQLSLLTPYVQELGIPHKWASII 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVGH SDRC SRFGRRRPFI GA I AVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGHMSDRCNSRFGRRRPFIFAGAGLICFAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI
Sbjct: 125 GNTRPRAIGVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LGYATG+FS WFK+ PFT+TSACN DCANLKSAF+LD++F+ ITT +S +AA E PLG
Sbjct: 185 LGYATGAFSNWFKVFPFTVTSACNADCANLKSAFYLDIVFMVITTYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
D+S P + + QSS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 DRSTPIAADVSGQSSHAQEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 304
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR GA LMLNSV LGITSVLMEKLCRKWGAGFIWGISNIL
Sbjct: 305 MGREIYGGKPNEGQNYNIGVRTGAFALMLNSVFLGITSVLMEKLCRKWGAGFIWGISNIL 364
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPPNGIVI A++IF +LG PLAITYSVPYAL+S R
Sbjct: 365 MALCFLAMLITSYVANHIGYLGHDLPPNGIVITAVVIFAVLGVPLAITYSVPYALISSRI 424
Query: 432 ESLGLGQG 439
E LGLGQG
Sbjct: 425 EPLGLGQG 432
|
Source: Hevea brasiliensis Species: Hevea brasiliensis Genus: Hevea Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224063331|ref|XP_002301100.1| sucrose proton symporter [Populus trichocarpa] gi|222842826|gb|EEE80373.1| sucrose proton symporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/435 (76%), Positives = 374/435 (85%), Gaps = 7/435 (1%)
Query: 12 RASTSRAVARPPA-------RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
RAS SR RPP+ ++VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIP
Sbjct: 10 RASRSRQTNRPPSTRHQQQQSSRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIP 69
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H WASIIWLCGP+SGLFVQPLVG SDRCTSRFGRRRPFIV G++ IA++VL+IG SADI
Sbjct: 70 HKWASIIWLCGPLSGLFVQPLVGVMSDRCTSRFGRRRPFIVAGSLLIAISVLIIGHSADI 129
Query: 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184
GW LGDRG RPRAI FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL
Sbjct: 130 GWWLGDRGGVRPRAIGAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 189
Query: 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244
FMA+GNILG+ATGS++GW+K+ PFT+TSACN+DCANLKSAF+LDV+F+AIT CIS SAA
Sbjct: 190 FMAIGNILGFATGSYNGWYKVFPFTVTSACNIDCANLKSAFYLDVVFMAITACISISAAQ 249
Query: 245 EVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304
E PL +S EE QS+ EAFLWELFGTFR F T+WIIL+VTAL W+GWFPF
Sbjct: 250 ESPLDLPARSMLADEEMPGQSNSEQEAFLWELFGTFRCFPSTVWIILLVTALNWIGWFPF 309
Query: 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364
LLFDTDWMGREIYGG+PNEGQNY TGVRMGA GLM NSV+LG+TSVLMEKLC KWGAGF+
Sbjct: 310 LLFDTDWMGREIYGGKPNEGQNYNTGVRMGAFGLMFNSVILGVTSVLMEKLCSKWGAGFL 369
Query: 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424
WG+SNILMALCFL+ML+L YVA H+ Y GH+LPP+ IV+ AL+IF +LG PLAITYSVPY
Sbjct: 370 WGLSNILMALCFLSMLVLSYVASHIGYMGHNLPPDSIVVIALVIFAVLGMPLAITYSVPY 429
Query: 425 ALVSIRTESLGLGQG 439
A+VS R ESLGLGQG
Sbjct: 430 AMVSSRIESLGLGQG 444
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38327323|gb|AAR17700.1| sucrose transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/440 (76%), Positives = 378/440 (85%), Gaps = 8/440 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
MP + R R ARP R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 1 MPAPDTDRH-------RVGARPAVRTRVPLRQLLRVASVACGIQFGWALQLSLLTPYVQE 53
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAWAS+IWLCGP+SGL VQPLVGH SDRCTSR+GRRRPFIV GA IAV+VL+IG
Sbjct: 54 LGIPHAWASVIWLCGPLSGLVVQPLVGHMSDRCTSRYGRRRPFIVVGAACIAVSVLIIGF 113
Query: 121 SADIGWLLGDRGD-FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
SADIGWLLGDRG RPRAIAVFVFGFWILDVANN+TQGPCRALLADLT KD+RRTRVAN
Sbjct: 114 SADIGWLLGDRGGGVRPRAIAVFVFGFWILDVANNVTQGPCRALLADLTEKDYRRTRVAN 173
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
AYFSLFMAVGN+LGYATGS S FK+ PF++T ACNV+CANLKSAFF+D FIAITT IS
Sbjct: 174 AYFSLFMAVGNVLGYATGSISYLFKVFPFSITPACNVNCANLKSAFFVDTAFIAITTWIS 233
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
SAA PLGS +++ PF++EG QSS + EAFLWELFGTFRYF G++W+IL+V AL W+
Sbjct: 234 ISAAQVTPLGSSNRTTPFADEGPGQSSHIEEAFLWELFGTFRYFPGSVWLILLVIALNWI 293
Query: 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359
GWFPFLLFDTDWMGREIYGG+PNEG NY+TGVRMGALGLMLNSV+LGITSVLMEKLCRKW
Sbjct: 294 GWFPFLLFDTDWMGREIYGGKPNEGINYSTGVRMGALGLMLNSVILGITSVLMEKLCRKW 353
Query: 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419
GAGF+WGIS+ILM LCF AML++ +V + RGHDLPP+GIVIAAL++F +LG PLAIT
Sbjct: 354 GAGFVWGISSILMTLCFFAMLVITFVNKSIGVRGHDLPPDGIVIAALVVFAVLGIPLAIT 413
Query: 420 YSVPYALVSIRTESLGLGQG 439
YSVPYALVS R ESLGLGQG
Sbjct: 414 YSVPYALVSSRIESLGLGQG 433
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|74476785|gb|ABA08443.1| sucrose transporter type 4 [Manihot esculenta] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/428 (76%), Positives = 372/428 (86%), Gaps = 2/428 (0%)
Query: 12 RASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII 71
+A + RA ARPP +VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIPHAWAS+I
Sbjct: 5 QAESHRARARPPVVRRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIPHAWASVI 64
Query: 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131
WLCGP+SGL VQPLVG SDRC SRFGRRRPFI+ GAI I VAVL+IG SADIGWLLGDR
Sbjct: 65 WLCGPLSGLVVQPLVGPMSDRCASRFGRRRPFILAGAILIVVAVLIIGHSADIGWLLGDR 124
Query: 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191
G+ RPRAI VFVFGFW+LDVANN TQGPCRALLADLTGKDHRRTRVANAYFSLFMA+GNI
Sbjct: 125 GNTRPRAIVVFVFGFWVLDVANNTTQGPCRALLADLTGKDHRRTRVANAYFSLFMAIGNI 184
Query: 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251
LG+ATG+FS WFK+ PFT+T+ACNVDCANLKSAF+LD++F+ IT+ +S +AA E PLG
Sbjct: 185 LGFATGAFSNWFKVFPFTVTTACNVDCANLKSAFYLDIVFMVITSYLSITAAQESPLGLS 244
Query: 252 DQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW 311
++S P +E+ +SS EAFLWELFGTFRYF +W IL+VTAL W+GWFPFLLFDTDW
Sbjct: 245 NRSTPLAEDVSVESS--QEAFLWELFGTFRYFPWPVWTILLVTALNWIGWFPFLLFDTDW 302
Query: 312 MGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNIL 371
MGREIYGG+PNEGQNY GVR G+ LMLNSV LGITSVLMEKLCRKWGAGFIWG+SNIL
Sbjct: 303 MGREIYGGKPNEGQNYNVGVRAGSFALMLNSVFLGITSVLMEKLCRKWGAGFIWGLSNIL 362
Query: 372 MALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431
MALCFLAMLI YVA H+ Y GHDLPP+GIVI+A++IF +LG PLAITYSVPYAL+S R
Sbjct: 363 MALCFLAMLITSYVANHIGYLGHDLPPSGIVISAVVIFAVLGVPLAITYSVPYALISSRI 422
Query: 432 ESLGLGQG 439
E LGLGQG
Sbjct: 423 EPLGLGQG 430
|
Source: Manihot esculenta Species: Manihot esculenta Genus: Manihot Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458976|ref|XP_002285568.1| PREDICTED: sucrose transport protein SUC4 [Vitis vinifera] gi|147802485|emb|CAN77414.1| hypothetical protein VITISV_000474 [Vitis vinifera] gi|302142125|emb|CBI19328.3| unnamed protein product [Vitis vinifera] gi|310877780|gb|ADP37121.1| sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/439 (77%), Positives = 375/439 (85%), Gaps = 6/439 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQG 439
SVPYAL+S R ESLGLGQG
Sbjct: 417 SVPYALISTRIESLGLGQG 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|5882292|gb|AAD55269.1|AF182445_1 sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 374/439 (85%), Gaps = 6/439 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
S DIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 STDIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
WFPFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 WFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQG 439
SVPYAL+S R ESLGLGQG
Sbjct: 417 SVPYALISTRIESLGLGQG 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|321531554|gb|ADW94617.1| sucrose transporter 4 [Populus tremula x Populus alba] | Back alignment and taxonomy information |
|---|
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/435 (75%), Positives = 371/435 (85%), Gaps = 7/435 (1%)
Query: 12 RASTSRAVARPPA-------RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIP 64
R S SR RPP+ ++VPLR+LL+V S+AGGIQFGWALQLSLLTPYVQELGIP
Sbjct: 10 RVSRSRQTNRPPSTRHHQQQSSRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIP 69
Query: 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124
H WASIIWLCGP+SGLFVQPLVG SDRCTSRFGRRRPFI G++ IA++VL+IG SADI
Sbjct: 70 HKWASIIWLCGPLSGLFVQPLVGVMSDRCTSRFGRRRPFIFAGSLLIAISVLIIGHSADI 129
Query: 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184
GW LGDRG RPRAI FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL
Sbjct: 130 GWWLGDRGGVRPRAIGAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 189
Query: 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244
FMAVGNILG+ATGS++GW+K+ PFT+TSACN+DCANLKSAF+LDV+F+AIT CIS +AA
Sbjct: 190 FMAVGNILGFATGSYNGWYKVFPFTVTSACNIDCANLKSAFYLDVVFMAITACISIAAAQ 249
Query: 245 EVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304
E PL +S EE S+ EAF+WELFGTFR F T+WIIL+VTAL W+GWFPF
Sbjct: 250 ESPLDLPARSMLADEETPGHSNSEQEAFIWELFGTFRCFPSTVWIILLVTALNWIGWFPF 309
Query: 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364
LLFDTDWMGREIYGG+PNEGQNY TGVRMGA GLM NSV+LG+TSVLMEKLC KWGAGF+
Sbjct: 310 LLFDTDWMGREIYGGKPNEGQNYNTGVRMGAFGLMFNSVILGVTSVLMEKLCSKWGAGFL 369
Query: 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424
WG+SNILMALCFL+ML+L YVA H+ Y GH+LPP+ IV+ AL+IF +LG PLAITYSVPY
Sbjct: 370 WGLSNILMALCFLSMLVLSYVASHIGYMGHNLPPDSIVVIALVIFAVLGMPLAITYSVPY 429
Query: 425 ALVSIRTESLGLGQG 439
A+VS R ESLGLGQG
Sbjct: 430 AMVSSRIESLGLGQG 444
|
Source: Populus tremula x Populus alba Species: Populus tremula x Populus alba Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6434829|gb|AAF08329.1|AF021808_1 putative sucrose transporter [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/439 (77%), Positives = 373/439 (84%), Gaps = 6/439 (1%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P RQR + RA P R +VPLR+LL+VASVA GIQFGWALQLSLLTPYVQE
Sbjct: 3 VPGGHRQRGRPRALIGE-----PVRPRVPLRRLLRVASVACGIQFGWALQLSLLTPYVQE 57
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LGIPHAW+SIIWLCGP+SGL VQPLVGH SDRC SRFGRRRPFIV GA SI VAVL+IG
Sbjct: 58 LGIPHAWSSIIWLCGPLSGLLVQPLVGHLSDRCNSRFGRRRPFIVAGATSIVVAVLIIGF 117
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
SADIG LLGD D RPRA+A FV GFW+LDVANN+TQGPCRALLADLT KDHRRTRVANA
Sbjct: 118 SADIGGLLGDGADRRPRAVATFVVGFWLLDVANNVTQGPCRALLADLTEKDHRRTRVANA 177
Query: 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240
YFSLF+AVGN+LG+ATGS+SGWF+I FT TS+CN DCANLKSAF LD+IFIAITT IS
Sbjct: 178 YFSLFIAVGNVLGFATGSYSGWFRIFWFTSTSSCNADCANLKSAFLLDIIFIAITTYISI 237
Query: 241 SAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG 300
+AA E+PL S +S SEE E S+ EAFLWELFGT RY SG+IWIIL VTALTW+G
Sbjct: 238 TAAQELPLSSSSRSTHISEEMAE-STHAQEAFLWELFGTLRYLSGSIWIILFVTALTWIG 296
Query: 301 WFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360
PFLLFDTDWMGREIYGG+PNEGQNY TGVRMGALGLMLNSVVLGITSVLMEKLCRKWG
Sbjct: 297 LLPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 356
Query: 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420
AGF+WG+SNILM+LCFL MLIL V HMD+ GHDLPP+G+VIAALI+F+ILG PLAITY
Sbjct: 357 AGFVWGLSNILMSLCFLLMLILSAVVKHMDFLGHDLPPSGVVIAALIVFSILGIPLAITY 416
Query: 421 SVPYALVSIRTESLGLGQG 439
SVPYAL+S R ESLGLGQG
Sbjct: 417 SVPYALISTRIESLGLGQG 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|395618811|gb|ABB30162.2| sucrose transport protein SUF4 [Pisum sativum] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/440 (74%), Positives = 374/440 (85%), Gaps = 4/440 (0%)
Query: 2 PQDERQ--RSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQ 59
P RQ RSK+R S+S ++P + +VPL KLL+VASVAGGIQFGWALQLSLLTPYVQ
Sbjct: 4 PDSSRQPHRSKTRPSSSSVRSKPRPKDRVPLTKLLRVASVAGGIQFGWALQLSLLTPYVQ 63
Query: 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119
+LGIPHAWASIIWLCGP+SGL VQPLVGH SDRCTSRFGRRRPFI+ GAISIA++VL+IG
Sbjct: 64 QLGIPHAWASIIWLCGPLSGLIVQPLVGHLSDRCTSRFGRRRPFILGGAISIALSVLIIG 123
Query: 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVAN 179
+AD+GW GD + R A+A FVFGFWILDVANN+TQGPCRALL DLTGKDHRRTRVAN
Sbjct: 124 HAADLGWKFGDTKEHRRSAVAFFVFGFWILDVANNVTQGPCRALLGDLTGKDHRRTRVAN 183
Query: 180 AYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239
AYFSLFMA+GNILGYATGS+SGW+++ PFTLT ACN+ CANLKSAFFLD++F+ ITT IS
Sbjct: 184 AYFSLFMAIGNILGYATGSYSGWYRVFPFTLTPACNISCANLKSAFFLDIVFMLITTYIS 243
Query: 240 ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWL 299
++A+EVPLGS + P +E E EAFLWELFGTF+YFS IWI+L VTALTW+
Sbjct: 244 ITSANEVPLGSSGE--PDAEAEGESGGSAEEAFLWELFGTFKYFSKPIWIVLSVTALTWV 301
Query: 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359
GWFPFLLFDTDWMGREIYGGEPNEG NY +GVRMGALGL+LNSVVLG+TS+LMEKLCRK
Sbjct: 302 GWFPFLLFDTDWMGREIYGGEPNEGTNYDSGVRMGALGLLLNSVVLGVTSLLMEKLCRKR 361
Query: 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419
GAGF+WGI+NILMA+CF+AML+L YVA + Y G DLPP IVIAAL IFT+LG PLAIT
Sbjct: 362 GAGFVWGIANILMAVCFIAMLVLTYVANDIGYLGKDLPPTSIVIAALTIFTVLGFPLAIT 421
Query: 420 YSVPYALVSIRTESLGLGQG 439
YSVPYAL+S + LGLGQG
Sbjct: 422 YSVPYALISTHIQPLGLGQG 441
|
Source: Pisum sativum Species: Pisum sativum Genus: Pisum Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 452 | ||||||
| TAIR|locus:2024422 | 510 | SUT4 "AT1G09960" [Arabidopsis | 0.891 | 0.790 | 0.736 | 2e-166 | |
| TAIR|locus:2064253 | 492 | SUC8 "AT2G14670" [Arabidopsis | 0.882 | 0.810 | 0.534 | 3.1e-115 | |
| TAIR|locus:2028947 | 491 | SUC7 "AT1G66570" [Arabidopsis | 0.880 | 0.810 | 0.530 | 3.5e-114 | |
| TAIR|locus:2158352 | 492 | SUC6 "AT5G43610" [Arabidopsis | 0.882 | 0.810 | 0.527 | 5.8e-114 | |
| TAIR|locus:2160732 | 491 | SUC9 "AT5G06170" [Arabidopsis | 0.882 | 0.812 | 0.519 | 4.6e-112 | |
| TAIR|locus:2199633 | 512 | SUC2 "AT1G22710" [Arabidopsis | 0.887 | 0.783 | 0.528 | 5.9e-112 | |
| TAIR|locus:2016069 | 513 | SUC1 "AT1G71880" [Arabidopsis | 0.893 | 0.787 | 0.527 | 1.8e-110 | |
| TAIR|locus:2016074 | 512 | SUC5 "AT1G71890" [Arabidopsis | 0.889 | 0.785 | 0.501 | 1.5e-106 | |
| TAIR|locus:2056675 | 594 | SUT2 "AT2G02860" [Arabidopsis | 0.480 | 0.365 | 0.535 | 1.6e-98 | |
| UNIPROTKB|Q10R54 | 538 | SUT1 "Sucrose transport protei | 0.891 | 0.749 | 0.449 | 3.6e-89 |
| TAIR|locus:2024422 SUT4 "AT1G09960" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
Identities = 302/410 (73%), Positives = 342/410 (83%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFS 90
R LL+VASVA GIQFGWALQLSLLTPYVQELGIPHAWAS+IWLCGP+SGLFVQPLVGH S
Sbjct: 41 RVLLRVASVACGIQFGWALQLSLLTPYVQELGIPHAWASVIWLCGPLSGLFVQPLVGHSS 100
Query: 91 DRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR-GDFRPRAIAVFVFGFWIL 149
DRCTS++GRRRPFIV GA++I+++V++IG +ADIGW GDR G +PRAI FV GFWIL
Sbjct: 101 DRCTSKYGRRRPFIVAGAVAISISVMVIGHAADIGWAFGDREGKIKPRAIVAFVLGFWIL 160
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
DVANNMTQGPCRALLADLT D+RRTRVAN YFSLFMAVGN+LGYATGS++GW+KI FT
Sbjct: 161 DVANNMTQGPCRALLADLTENDNRRTRVANGYFSLFMAVGNVLGYATGSYNGWYKIFTFT 220
Query: 210 LTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSDVH 269
T ACNV+CANLKSAF++DV HEVPL S + E H Q+S
Sbjct: 221 KTVACNVECANLKSAFYIDVVFIAITTILSVSAAHEVPLAS------LASEAHGQTSGTD 274
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
EAFL E+FGTFRYF G +WIIL+VTALTW+GWFPF+LFDTDWMGREIYGGEPN G +Y+
Sbjct: 275 EAFLSEIFGTFRYFPGNVWIILLVTALTWIGWFPFILFDTDWMGREIYGGEPNIGTSYSA 334
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHM 389
GV MGALGLMLNSV LGITSVLMEKLCRKWGAGF+WGISNILMA+CFL M+I +VA H+
Sbjct: 335 GVSMGALGLMLNSVFLGITSVLMEKLCRKWGAGFVWGISNILMAICFLGMIITSFVASHL 394
Query: 390 DYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439
Y GH+ PP IV AA++IFTILG PLAITYSVPYAL+SIR ESLGLGQG
Sbjct: 395 GYIGHEQPPASIVFAAVLIFTILGIPLAITYSVPYALISIRIESLGLGQG 444
|
|
| TAIR|locus:2064253 SUC8 "AT2G14670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 225/421 (53%), Positives = 291/421 (69%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCTSRFGRRRPFIATGALLVAVAVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLGI S+ +E + +K GA +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGALGLMLNSIVLGIVSLGIEGISKKIGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S G GQ
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 G 439
G
Sbjct: 437 G 437
|
|
| TAIR|locus:2028947 SUC7 "AT1G66570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1126 (401.4 bits), Expect = 3.5e-114, P = 3.5e-114
Identities = 223/420 (53%), Positives = 289/420 (68%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W S IWLCGPVSGL VQP VG+
Sbjct: 28 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWPSFIWLCGPVSGLLVQPSVGY 87
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRCTSRFGRRRPFI GA+ +AV+V+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 88 FSDRCTSRFGRRRPFIATGALLVAVSVVLIGYAADFGHSMGDKIDKPVKMRAVVIFALGF 147
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 148 WILDVANNTLQGPCRAFLGDLAAGDAQKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 207
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 208 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 261
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 262 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 315
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +GALGLMLNS+VLG+ S+ +E + RK G A +WG NI++A+C + +
Sbjct: 316 KMKKLYNQGIHVGALGLMLNSIVLGVMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 375
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S G GQ
Sbjct: 376 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 435
|
|
| TAIR|locus:2158352 SUC6 "AT5G43610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1124 (400.7 bits), Expect = 5.8e-114, P = 5.8e-114
Identities = 222/421 (52%), Positives = 288/421 (68%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
P+RK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGPVSGL VQP VG+
Sbjct: 29 PMRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPVSGLLVQPSVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +AVAV+LIG +AD G +GD+ D + RA+ +F GF
Sbjct: 89 FSDRCKSRFGRRRPFIAMGALLVAVAVVLIGYAADFGHSMGDKVDEPVKMRAVVIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA+FS FMAVGN+LGYA GS++ +KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAFFSFFMAVGNVLGYAAGSYTNLYKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS FFL + + Q +P ++ +E++
Sbjct: 209 PFTMTKACDIYCANLKSCFFLSITLLLVVTIIALWYVED------KQWSPKADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++LIVTAL W+ WFPFLL+DTDWMGRE+YGG+ ++G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLYDTDWMGREVYGGD-SKGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y G+ +G LGLMLNS+VLG S+ +E + RK G A +WG NI++A+C + +
Sbjct: 317 KMKKLYNQGIHVGGLGLMLNSIVLGFMSLGIEGISRKMGGAKRLWGAVNIILAVCLAMTV 376
Query: 380 LILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438
L+ H G LP +GI AL +F +LG PLAIT+S+P+AL SI + S G GQ
Sbjct: 377 LVTKKAEEHRRIAGPMALPTDGIRAGALTLFALLGIPLAITFSIPFALASIISSSSGAGQ 436
Query: 439 G 439
G
Sbjct: 437 G 437
|
|
| TAIR|locus:2160732 SUC9 "AT5G06170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 218/420 (51%), Positives = 285/420 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A GIQFGWALQLSLLTPYVQ LG+PH W+S IWLCGP+SGL VQP VG+
Sbjct: 29 PLRKMISVASIAAGIQFGWALQLSLLTPYVQLLGVPHKWSSFIWLCGPISGLLVQPTVGY 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
FSDRC SRFGRRRPFI GA+ +A+AV+LIG +AD G +GD+ D + RA+ FV GF
Sbjct: 89 FSDRCKSRFGRRRPFIATGALLVALAVILIGFAADFGHTMGDKLDEAVKIRAVGFFVVGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA L DL D ++TR ANA FS FMAVGN+LGYA GS++ KI
Sbjct: 149 WILDVANNTLQGPCRAFLGDLAAGDAKKTRTANAIFSFFMAVGNVLGYAAGSYTNLHKIF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLKS F + + + Q +P ++ +E++
Sbjct: 209 PFTVTKACDIYCANLKSCFIISITLLIVLTIIALWYVED------KQWSPNADSDNEKTP 262
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
F E+FG F+ +W++L VTAL W+ WFPFLL+DTDWMGRE+YGG+ + G +
Sbjct: 263 -----FFGEIFGAFKVMKRPMWMLLAVTALNWIAWFPFLLYDTDWMGREVYGGD-SAGDD 316
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCF-LAML 380
Y G+++G+LGLMLNS+VLG+ S+++ + +K GA +WG NI++A+C + +L
Sbjct: 317 KMKKLYNHGIQVGSLGLMLNSIVLGVMSLVIGVISKKIGAKRLWGAVNIILAVCLAMTVL 376
Query: 381 ILYYVAIHMDYRGH-DLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439
+ H G LP N I AL +F ILG PLAIT+S+P+AL SI + S G GQG
Sbjct: 377 VTKKAEEHRKIAGRMALPTNAIRDGALSLFAILGIPLAITFSIPFALASIISSSSGAGQG 436
|
|
| TAIR|locus:2199633 SUC2 "AT1G22710" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1105 (394.0 bits), Expect = 5.9e-112, P = 5.9e-112
Identities = 223/422 (52%), Positives = 290/422 (68%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
LRK++ V+S+A G+QFGWALQLSLLTPYVQ LGIPH WAS+IWLCGP+SG+ VQP+VG+
Sbjct: 29 LRKIISVSSIAAGVQFGWALQLSLLTPYVQLLGIPHKWASLIWLCGPISGMLVQPIVGYH 88
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRP--RAIAVFVFGFW 147
SDRCTSRFGRRRPFIV GA + VAV LIG +ADIG +GD+ D P RAIA+F GFW
Sbjct: 89 SDRCTSRFGRRRPFIVAGAGLVTVAVFLIGYAADIGHSMGDQLDKPPKTRAIAIFALGFW 148
Query: 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207
ILDVANN QGPCRA LADL+ + ++TR ANA+FS FMAVGN+LGYA GS+ +K++P
Sbjct: 149 ILDVANNTLQGPCRAFLADLSAGNAKKTRTANAFFSFFMAVGNVLGYAAGSYRNLYKVVP 208
Query: 208 FTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSSD 267
FT+T +C++ CANLK+ FFL + E P + + +A +G ++S+
Sbjct: 209 FTMTESCDLYCANLKTCFFLSITLLLIVTFVSLCYVKEKPW-TPEPTA----DG--KASN 261
Query: 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN- 326
V F E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE+YGG +
Sbjct: 262 V--PFFGEIFGAFKELKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVYGGNSDATATA 319
Query: 327 -----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCF-LAM 379
Y GVR GALGLMLN++VLG S+ +E + RK G A +WGI N ++A+C + +
Sbjct: 320 ASKKLYNDGVRAGALGLMLNAIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILAICLAMTV 379
Query: 380 LILYYVAIHM-DYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437
++ H D+ G PP + AL +F ILG P AIT+S+P+AL SI + + G G
Sbjct: 380 VVTKQAENHRRDHGGAKTGPPGNVTAGALTLFAILGIPQAITFSIPFALASIFSTNSGAG 439
Query: 438 QG 439
QG
Sbjct: 440 QG 441
|
|
| TAIR|locus:2016069 SUC1 "AT1G71880" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1091 (389.1 bits), Expect = 1.8e-110, P = 1.8e-110
Identities = 222/421 (52%), Positives = 283/421 (67%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPYVQ LGIPH W+S+IWLCGPVSG+ VQP+VG
Sbjct: 29 PLRKIISVASIAAGVQFGWALQLSLLTPYVQLLGIPHKWSSLIWLCGPVSGMIVQPIVGF 88
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGF 146
SDRC S+FGRRRPFI GA +AVAV LIG +AD G+ +GD+ + + RAI +F GF
Sbjct: 89 HSDRCRSKFGRRRPFIATGAALVAVAVFLIGYAADFGYKMGDKLEEKVKVRAIGIFALGF 148
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
WILDVANN QGPCRA LADL D +RTRVANA+FS FMAVGN+LGYA GS++ K+
Sbjct: 149 WILDVANNTLQGPCRAFLADLAAGDAKRTRVANAFFSFFMAVGNVLGYAAGSYTNLHKMF 208
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + ++ P + + E++S
Sbjct: 209 PFTMTKACDIYCANLKTCFFLSITLLLIVTVTSLWYVND----KQWSPPPRNADDDEKTS 264
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP--NEG 324
V E+FG F+ +W++LIVTAL W+ WFPFLLFDTDWMGRE++GG+ NE
Sbjct: 265 SV--PLFGEIFGAFKVMKRPMWMLLIVTALNWIAWFPFLLFDTDWMGREVFGGDSDGNER 322
Query: 325 QN--YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y+ GV+ GA+GLM NS+VLG S+ +E + RK G A +WGI N ++A LAM +
Sbjct: 323 SKKLYSLGVQSGAMGLMFNSIVLGFMSLGVEWIGRKLGGAKRLWGIVNFILA-AGLAMTV 381
Query: 382 LY--YVAIHMDYRGHDLPPNGIVIA-ALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438
L + H G P+ V A AL +F +LG PLAIT+S P+AL SI + G GQ
Sbjct: 382 LVTKFAEDHRKTAGDLAGPSASVKAGALSLFAVLGIPLAITFSTPFALASIFSSCSGAGQ 441
Query: 439 G 439
G
Sbjct: 442 G 442
|
|
| TAIR|locus:2016074 SUC5 "AT1G71890" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1054 (376.1 bits), Expect = 1.5e-106, P = 1.5e-106
Identities = 211/421 (50%), Positives = 278/421 (66%)
Query: 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGH 88
PLRK++ VAS+A G+QFGWALQLSLLTPY+Q LGIPH W+S +WLCGP+SG+ VQP+VG+
Sbjct: 30 PLRKIISVASIAAGVQFGWALQLSLLTPYIQLLGIPHKWSSYMWLCGPISGMIVQPIVGY 89
Query: 89 FSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGF 146
SDRC SRFGRRRPFI G +AV+V LIG +AD+G GD+ R RAI +F+ GF
Sbjct: 90 HSDRCESRFGRRRPFIAAGVALVAVSVFLIGFAADMGHSFGDKLENKVRTRAIIIFLTGF 149
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206
W LDVANN QGPCRA LADL D ++TRVANA FS FMAVGN+LGYA GS++ K+
Sbjct: 150 WFLDVANNTLQGPCRAFLADLAAGDAKKTRVANACFSFFMAVGNVLGYAAGSYTNLHKMF 209
Query: 207 PFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGHEQSS 266
PFT+T AC++ CANLK+ FFL + + Q +P + E++S
Sbjct: 210 PFTMTKACDIYCANLKTCFFLSITLLLIVTFSSLWYVKD------KQWSPPQGDKEEKTS 263
Query: 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQN 326
+ F E+FG R+ + ++LIVT + W+ WFPF+L+DTDWMGRE+YGG + +
Sbjct: 264 SLF--FFGEIFGAVRHMKRPMVMLLIVTVINWIAWFPFILYDTDWMGREVYGGNSDGDER 321
Query: 327 ----YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWGISNILMALCFLAMLI 381
Y GV+ GALGLM NS++LG S+ +E + RK G A +WG N ++A+ LAM +
Sbjct: 322 SKKLYDQGVQAGALGLMFNSILLGFVSLGVESIGRKMGGAKRLWGCVNFILAIG-LAMTV 380
Query: 382 LYYVAI--HMDYRGHDL-PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438
L + H + G P +GI +FT+LG PLAITYS+P+AL SI + + G GQ
Sbjct: 381 LVTKSAEHHREIAGPLAGPSSGIKAGVFSLFTVLGIPLAITYSIPFALASIFSTNSGAGQ 440
Query: 439 G 439
G
Sbjct: 441 G 441
|
|
| TAIR|locus:2056675 SUT2 "AT2G02860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 121/226 (53%), Positives = 155/226 (68%)
Query: 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR 92
L+ +VA G+QFGWALQLSLLTPY+Q LGI HA++S IWLCGP++GL VQP VG +SD+
Sbjct: 63 LVLSCTVAAGVQFGWALQLSLLTPYIQTLGISHAFSSFIWLCGPITGLVVQPFVGIWSDK 122
Query: 93 CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF-------RPRAIAVFVFG 145
CTS++GRRRPFI+ G+ I++AV++IG SADIG+LLGD + R RA VF+ G
Sbjct: 123 CTSKYGRRRPFILVGSFMISIAVIIIGFSADIGYLLGDSKEHCSTFKGTRTRAAVVFIIG 182
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FW+LD+ANN QGP RALLADL+G D R T ANA F L+MA+GNILG++ G+ W +
Sbjct: 183 FWLLDLANNTVQGPARALLADLSGPDQRNT--ANAVFCLWMAIGNILGFSAGASGKWQEW 240
Query: 206 LPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSH 251
PF + AC C NLK+AF L V E+P S+
Sbjct: 241 FPFLTSRACCAACGNLKAAFLLAVVFLTICTLVTIYFAKEIPFTSN 286
|
|
| UNIPROTKB|Q10R54 SUT1 "Sucrose transport protein SUT1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
Identities = 191/425 (44%), Positives = 258/425 (60%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
L +L+ VAGG+Q+GWALQLSLLTPYVQ LG+ HA S +WLCGP++G+ VQP VG +
Sbjct: 50 LGRLILSGMVAGGVQYGWALQLSLLTPYVQTLGLSHALTSFMWLCGPIAGMVVQPCVGLY 109
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGD-------FRPRAIAVF 142
SDRCTS++GRRRP+I+ G + I +AV++IG SADIG+ +GD + R A V+
Sbjct: 110 SDRCTSKWGRRRPYILTGCVLICLAVVVIGFSADIGYAMGDTKEDCSVYHGSRWHAAIVY 169
Query: 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202
V GFW+LD +NN QGP RAL+ADL+G+ T AN+ F +MA+GNILGY++GS + W
Sbjct: 170 VLGFWLLDFSNNTVQGPARALMADLSGRHGPGT--ANSIFCSWMAMGNILGYSSGSTNNW 227
Query: 203 FKILPFTLTSACNVDCANLKSAFFLDVXXXXXXXXXXXXXXHEVPLGSHDQSAPFSEEGH 262
K PF T AC CANLK AF + V EVP + A + +
Sbjct: 228 HKWFPFLKTRACCEACANLKGAFLVAVIFLSLCLVITLIFAKEVPFKGN---AALPTKSN 284
Query: 263 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPN 322
E + L L G FR + +LIVT LTWL WFPF+L+DTDWMGREIY G+P
Sbjct: 285 EPAEPEGTGPLAVLKG-FRNLPTGMPSVLIVTGLTWLSWFPFILYDTDWMGREIYHGDPK 343
Query: 323 ----EGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLA 378
+ + + GVR GA GL+LNS+VLG +S L+E +CRK G +W SN L+ + A
Sbjct: 344 GTDPQIEAFNQGVRAGAFGLLLNSIVLGFSSFLIEPMCRKVGPRVVWVTSNFLVCIAMAA 403
Query: 379 MLILYYVAIHMDYRGHD----LPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434
++ + ++ D+ G I L++F LG PLA+ YSVP+A+ + +
Sbjct: 404 TALISFWSLK-DFHGTVQKAITADKSIKAVCLVLFAFLGVPLAVLYSVPFAVTAQLAATR 462
Query: 435 GLGQG 439
G GQG
Sbjct: 463 GGGQG 467
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FE59 | SUC4_ARATH | No assigned EC number | 0.7243 | 0.9358 | 0.8294 | yes | no |
| A2ZN77 | SUT2_ORYSI | No assigned EC number | 0.6595 | 0.8938 | 0.8063 | N/A | no |
| Q0ILJ3 | SUT2_ORYSJ | No assigned EC number | 0.6587 | 0.8960 | 0.8083 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 452 | |||
| TIGR01301 | 477 | TIGR01301, GPH_sucrose, GPH family sucrose/H+ symp | 0.0 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 9e-08 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 9e-08 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 2e-06 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 7e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.001 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.004 |
| >gnl|CDD|233349 TIGR01301, GPH_sucrose, GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Score = 634 bits (1638), Expect = 0.0
Identities = 274/419 (65%), Positives = 316/419 (75%), Gaps = 9/419 (2%)
Query: 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVG 87
VPLRKLL+VASVA G+QFGWALQLSLLTPYVQELGIPHAWASIIWLCGP+SGL VQPLVG
Sbjct: 1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVG 60
Query: 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD--RGDFRPRAIAVFVFG 145
+ SDRCTSRFGRRRPFI GA +A AV+LIG +ADIG L GD +PRAI VFV G
Sbjct: 61 YLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVG 120
Query: 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205
FWILDVANNM QGPCRA LADLTG D RRTR+ANAYFS FMA+GN+LGYA G++SG +KI
Sbjct: 121 FWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKI 180
Query: 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265
PFT T AC V CANLKS F +D+I +AI T I+ SA E PL D + E S
Sbjct: 181 FPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI--NSEAAPPS 238
Query: 266 SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ 325
EAF ELFG F+Y +WI+L+VT L W+ WFPF+LFDTDWMGRE+YGG N+G
Sbjct: 239 KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298
Query: 326 NYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-FIWGISNILMALCFLAMLILYY 384
Y GVR GA GLMLNSVVLGITS+ MEKLCR WGAG +WGI NI++A+C A +++ Y
Sbjct: 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTY 358
Query: 385 VAIHMDYRGHDL----PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439
VA + Y D PP GI +ALI+F ILG PLAITYS+P+AL SIR+ +LG GQG
Sbjct: 359 VAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQG 417
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. Length = 477 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 75/382 (19%), Positives = 142/382 (37%), Gaps = 79/382 (20%)
Query: 57 YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116
Y LG+ A I+L + F P+VG DR +R+G+ RP+++ GA I +A+
Sbjct: 26 YTDVLGLSAAAVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGA--IPLAIS 83
Query: 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL-DVANNMTQGPCRALLADLTGKDHRRT 175
L+ L A L A ++ F +IL +A P +L+ LT RT
Sbjct: 84 LVLLFATPFGLSM-------TAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERT 136
Query: 176 RVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAI- 234
+A +Y + +G +L I P + N +FL + IAI
Sbjct: 137 SLA-SYRRIGATIGGLLVAV---------IAPPLVALLGG---GNGAKGYFLAALIIAIL 183
Query: 235 ---TTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT-FRYFSGTIWII 290
I + E +Q S L ++F F+ + + I+
Sbjct: 184 AVVGFLICFAGTKERVSVPPEQKEKVS--------------LRDMFKALFK--NRPLLIL 227
Query: 291 LIVTALTWLGWF----PFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346
L++ L L L + T +G + ++ L++ ++
Sbjct: 228 LLLYLLNALAMAVRNGLLLYYFTYVLGNA----------------GLFSVLLLIGTIAAI 271
Query: 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAAL 406
+ + L L +++G + + +L A+ + + L P G + L
Sbjct: 272 LGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFL---------------PPGSLWLFL 316
Query: 407 IIFTILGGPLAITYSVPYALVS 428
++ + G L + +P+A+++
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLA 338
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-08
Identities = 80/458 (17%), Positives = 147/458 (32%), Gaps = 73/458 (15%)
Query: 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCG--------PVSGLFVQPLVG 87
VA++ GG FG+ + + + + I C VS V L+G
Sbjct: 4 VAAL-GGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 88 HFSDR-CTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146
RFGR++ ++ + + + LL G + + + R I G
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFV-IGALLQGFAKGKSFYM----LIVGRVIVGLGVGG 117
Query: 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG----- 201
+ V ++++ K R + + L + G ++ G
Sbjct: 118 ISVLVPM---------YISEIAPKKLRGALGS--LYQLGITFGILVAAIIGLGLNKYSNS 166
Query: 202 ----WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF 257
L F + L + V+ + A A G D
Sbjct: 167 DGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE---EARAVLAKLRGVSDVDQEI 223
Query: 258 SEE--GHEQSSDVHEAFLWELFGTFRYF-----SGTIWIILIVTALTWLGWFPFLLFDTD 310
EE E+S + +A ELF + I +T + + ++ +F+T
Sbjct: 224 QEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETL 283
Query: 311 WMGREIYGGEPNEGQNYAT-----------GVR----MGALGLMLNSVVLGITSVLMEKL 355
+ + N+ G R +GA G+ + +VLG+ + + K
Sbjct: 284 GLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAK- 342
Query: 356 CRKWGAGFIWGISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414
GAG + + +L F + +V + +L P G+ A+ I T
Sbjct: 343 --SKGAGIVAIVFILLFIAFFALGWGPVPWVIV------SELFPLGVRPKAMAIATAANW 394
Query: 415 PLAITYSVPYALVSIRTESLGLGQGGHFYGLYVYKIFF 452
+ + + I T ++G F GL V I F
Sbjct: 395 --LANFLIGFLFPII-TGAIGGYVFLVFAGLLVLFILF 429
|
Length = 449 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-06
Identities = 80/419 (19%), Positives = 145/419 (34%), Gaps = 80/419 (19%)
Query: 22 PPARAKVPLRKLLKVAS--VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSG 79
+ K+ L++ + A FG + L LL Y G+ A A I+L +
Sbjct: 3 NSSSKKLSLKEKIGYGLGDFASNFAFG-IVVLYLLFFYTDVFGLSAALAGTIFLVARIID 61
Query: 80 LFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139
P++G DR SR+GR RP+++ GAI A+ +L+ ++ D G
Sbjct: 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPD----FSMTGKL---IY 114
Query: 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL-GYATGS 198
A+ + +L + + P AL ++T R + ++ +F ++G +L
Sbjct: 115 ALVT--YMLLGLGYTLVNIPYGALGPEITQDPQERASL-TSWRMVFASLGGLLVAVLFPP 171
Query: 199 FSGWF----KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS 254
F K L + T A L VI + I E +
Sbjct: 172 LVKLFGGGDKALGYQGT------------ALVLGVIGV-ILLLFCFFNVKERVV------ 212
Query: 255 APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLL-----FDT 309
E + V F+ ++L++ L F + T
Sbjct: 213 -----ETQPTKTGVKLKLKDSFLLIFK---NRPLLLLLLMNLLLFIAFNIRGSIMVYYVT 264
Query: 310 DWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369
+G L L+ + L I +L +L +K+G ++ I
Sbjct: 265 YVLGDPE---------------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGL 309
Query: 370 ILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428
+L+A+ +L + P G V+ ++ I G I +P+A+V+
Sbjct: 310 LLLAVGYLLLYFT---------------PAGSVVLIVVALIIAGVGTGIANPLPWAMVA 353
|
Length = 467 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 27/181 (14%)
Query: 30 LRKLLKVASVAGGIQFGWALQLSLLTPY-----VQELGIPHAWASIIWLCGPVSGLFVQP 84
L K K + G+ L+T Y Q LG+ A ++ + + P
Sbjct: 214 LTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIP 273
Query: 85 LVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF 144
L G SD R GRR I+ ++ +AV L+ D G +F F
Sbjct: 274 LSGALSD----RIGRRPVLIIFTVLAALLAVPLLMALLDSGS------------FTLFFF 317
Query: 145 GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWF 203
+ + M GP + L +L + R T + AY + + + +
Sbjct: 318 LVLGMALIGGMYTGPMGSFLPELFPTEVRYTGASLAY-----NLAGAIFGGFAPYIAAAL 372
Query: 204 K 204
Sbjct: 373 V 373
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 31/155 (20%), Positives = 54/155 (34%), Gaps = 22/155 (14%)
Query: 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104
L L ++LG+ + A +I + L G+ SD RFGRRR +
Sbjct: 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLL 68
Query: 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL 164
+ + ++LL ++ + + G ++L + AL+
Sbjct: 69 LGLLLFALGSLLL----------------AFASSLWLLLVGRFLLGLGGGALYPAAAALI 112
Query: 165 ADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199
A+ R A FS +G +LG G
Sbjct: 113 AEWFPPKERGR--ALGLFSAGFGLGALLGPLLGGL 145
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 74/414 (17%), Positives = 135/414 (32%), Gaps = 83/414 (20%)
Query: 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT 94
+ A G +L L Y+ ++LGI ++ + QPL G SDR
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDR-- 58
Query: 95 SRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANN 154
FGRRR ++ G + A+ +LL+ ++ + LL + + G
Sbjct: 59 --FGRRR-VLLIGLLLFALGLLLLLFASSLWLLL----------VLRVLQGL-----GGG 100
Query: 155 MTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212
AL+AD + R + +A F L A+G +LG S GW
Sbjct: 101 ALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGW---------- 150
Query: 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272
++AF + I + ++A P S + +
Sbjct: 151 ---------RAAFLILAILALLAAVLAALLLPRPPPESKRPKP---------AEEAPAPL 192
Query: 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332
+ R + + L++ + +L P +
Sbjct: 193 VPAWKLLLRDPVLWLLLALLLFGFAFFALLTYL---------------PLYQEVLGLSAL 237
Query: 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392
+ L L L ++ I +L+ +L + G ++ +L+ L L + +
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLAL----------- 286
Query: 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLY 446
L + L+ +LG + + ALVS + + G GLY
Sbjct: 287 ---LSLTESSLWLLVALLLLGFGAGLVFPALNALVS---DLAPKEERGTASGLY 334
|
Length = 346 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 41/193 (21%), Positives = 75/193 (38%), Gaps = 19/193 (9%)
Query: 1 MPQDERQRSKSRASTSRAVARPPARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE 60
+P+ + + + + PA + +L + F + L+ L Y +
Sbjct: 172 LPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEV 231
Query: 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120
LG+ A ++ + G + L+G SD R GRRR ++ + I A+ L L
Sbjct: 232 LGLSALLAGLLLGLAGLLGAIGRLLLGRLSD----RLGRRRRLLLALLLLILAALGLALL 287
Query: 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180
S L +A+ + GF + AL++DL K+ R T A+
Sbjct: 288 SLTESSLWL--------LVALLLLGF-----GAGLVFPALNALVSDLAPKEERGT--ASG 332
Query: 181 YFSLFMAVGNILG 193
++ ++G LG
Sbjct: 333 LYNTAGSLGGALG 345
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 100.0 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.96 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.96 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.96 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.95 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.95 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.95 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.95 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.94 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.94 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.94 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.94 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.94 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.93 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.93 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.93 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.93 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.93 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.93 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.93 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.93 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.92 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.92 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.92 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.92 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.91 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.91 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.91 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.91 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.91 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.91 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.91 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.91 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.9 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.9 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.9 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.9 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.89 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.88 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.88 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.87 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.86 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.84 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.83 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.83 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.82 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.82 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.82 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.82 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.81 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.81 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.8 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.8 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.79 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.78 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.77 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.76 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.72 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.71 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.7 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.7 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.69 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.69 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.69 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.68 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.68 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.67 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.6 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.51 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.49 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.47 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.47 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.42 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.4 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.36 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.35 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.33 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.32 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.32 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.3 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.3 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.3 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.29 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.28 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.27 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.25 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.25 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.25 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.25 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.24 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.24 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.23 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.23 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.23 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.22 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.22 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.21 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.21 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.19 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.19 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.18 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.18 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.18 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.18 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.14 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.13 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.12 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.12 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.1 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.09 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.09 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.09 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.07 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.07 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.07 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.06 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.06 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.04 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.04 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.02 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.02 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.01 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.99 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.98 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.98 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.98 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.97 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.97 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.96 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.96 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.93 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.92 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.92 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.9 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.89 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.88 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.88 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.88 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.88 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.87 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.86 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.86 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.86 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.83 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.83 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.82 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.81 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.81 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.78 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.77 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.75 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.73 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.7 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.7 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.69 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.69 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.68 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.67 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.64 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.6 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.57 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.52 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.51 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.5 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.5 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.48 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.44 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.44 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.43 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.42 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.39 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.36 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.33 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.32 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.29 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.28 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.22 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.2 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.2 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.17 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.15 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.1 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.1 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.06 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.03 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.01 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.89 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.87 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.82 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.77 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.75 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.71 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.63 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 97.57 | |
| KOG4830 | 412 | consensus Predicted sugar transporter [Carbohydrat | 97.56 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 97.43 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.39 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.37 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.27 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.21 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.98 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.89 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.81 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.8 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.7 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 96.59 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 96.58 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 96.45 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.44 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.18 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.01 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 95.71 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.7 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.61 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 95.29 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.26 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 94.91 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 91.81 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 91.44 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 91.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 91.02 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 90.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.4 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 89.28 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 89.18 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 88.45 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 87.64 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 81.48 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.37 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 80.27 | |
| PF02990 | 521 | EMP70: Endomembrane protein 70; InterPro: IPR00424 | 80.26 |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=324.53 Aligned_cols=419 Identities=65% Similarity=1.135 Sum_probs=334.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+.++++.++...++.++.+....+++++|++++|.++.+.++++.+..+.+.+.+|+.|+++||+++|+||||++++.+.
T Consensus 2 ~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~ 81 (477)
T TIGR01301 2 PLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGA 81 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999998778
Q ss_pred HHHHHHHHHHhcccccccccCCC--CCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
+..++++.+++++++....+.+. +.......+..+++..+..++.+...++..++++|.+|+++|.++.++++.+...
T Consensus 82 ~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~ 161 (477)
T TIGR01301 82 ALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM 161 (477)
T ss_pred HHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH
Confidence 88888888887776643332221 0111223345566667778889999999999999999998764337999999999
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
++|+++|+.++++..+...+|+......+..+.+.+..|++.+++.++..++..+..||++..++++.++++. ++.++
T Consensus 162 ~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~--~~~~~ 239 (477)
T TIGR01301 162 AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEA--APPSK 239 (477)
T ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhc--ccccc
Confidence 9999999999987544334455444434444458899999999998888889999999976533222111110 11111
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
.+.+..++++.+.+|+.||.++.++++.++.|++++++..|.++|+++++|++++.....|++|...+.+++..+++...
T Consensus 240 ~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~ 319 (477)
T TIGR01301 240 HGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG 319 (477)
T ss_pred cchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 12334577889999999999999999999999999999999999999999999888778899998889999999999989
Q ss_pred HHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCC---CCCCchHHHHHHHHHHHhHHhHhHhh
Q 012976 347 ITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHM-DYRGHD---LPPNGIVIAALIIFTILGGPLAITYS 421 (452)
Q Consensus 347 i~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (452)
+.+++..++.+|+|+ |++...+.++.++++....+.+...+|. +..+++ .|+.+..+.+++.+.+.|+.++..++
T Consensus 320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~s 399 (477)
T TIGR01301 320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYS 399 (477)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999985 6777999999999998888776433221 111111 23333357788899999999999999
Q ss_pred ccchhhhhhcccccCcccceeeeeeeee
Q 012976 422 VPYALVSIRTESLGLGQGGHFYGLYVYK 449 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~g~g~~~g~~n~~~ 449 (452)
+|++++++..+++++++|.++|++|.+.
T Consensus 400 iPfal~s~~~~~~~~~~G~~mgilN~~I 427 (477)
T TIGR01301 400 IPFALASIRSSNLGAGQGLSMGVLNLAI 427 (477)
T ss_pred HhHHHHHHHccccCCCCcchhhHHHHHH
Confidence 9999999999988899999999999763
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=270.59 Aligned_cols=411 Identities=54% Similarity=0.952 Sum_probs=313.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
++++.++...++.++++.....++++|++++|++..+.+.++.+..+.+.+.+|+.|..+||+++|+||||+++..+...
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 77888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccccCCCCC--CCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGD--FRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
..+++.++.+.+++++.+.|... .........+++..+..++.....+++.++..|...++++.+ ++++....+.++
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~-~Ans~f~~f~av 190 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKT-RANSVFSFFMAV 190 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhh-ccchhHHHHHHh
Confidence 99999999999998877755422 345677788899999999999999999999999998888873 299999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
|+.+|..++++..+...+|+......+.+....+..+.....+..+.-....+...|++...+. .+.+....
T Consensus 191 GnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~~~--------~~~~~~~~ 262 (498)
T KOG0637|consen 191 GNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSPKG--------TTARSKSS 262 (498)
T ss_pred cceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCCCc--------cccccccc
Confidence 9999999998877777777665544333333333333333222222222121111121111110 00011111
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCccc------ccccccchhhHHHHHHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQ------NYATGVRMGALGLMLNS 342 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~ 342 (452)
+.+...+....++++||+.+.+++...+.|++++++..|.++++++++|+++|+... .|+.|...+.+++++++
T Consensus 263 ~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~GL~ins 342 (498)
T KOG0637|consen 263 KLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLGLMLNS 342 (498)
T ss_pred CcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHHHHHHH
Confidence 223344666788888999999999999999999999999999999999999988775 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHH--HHHHHHHHHHHHHHhhhcc-ccCC-CCCCCCchHHHHHHHHHHHhHHhHh
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNI--LMALCFLAMLILYYVAIHM-DYRG-HDLPPNGIVIAALIIFTILGGPLAI 418 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (452)
+...+.+....++.||+|-|+.+..+.. ..++++..+....+....+ ...| ...|.....+.++..+...|+.++.
T Consensus 343 ~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~~~g~~~a~ 422 (498)
T KOG0637|consen 343 IVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYAILGIPLAI 422 (498)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHHHhCCcccc
Confidence 9999999999999999995554433333 3333333322222221111 1111 1112223456677788889999999
Q ss_pred HhhccchhhhhhcccccCcccceeeeeeeeee
Q 012976 419 TYSVPYALVSIRTESLGLGQGGHFYGLYVYKI 450 (452)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~g~g~~~g~~n~~~~ 450 (452)
.++++++..+....+..+|+|...|+.|++..
T Consensus 423 t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ 454 (498)
T KOG0637|consen 423 TFSIPFALASIEIGNSGLGQGLDLGVLNCAIV 454 (498)
T ss_pred ccccccccccccccCccCCCCceeeeeeeeee
Confidence 99999999999889999999999999999864
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=229.89 Aligned_cols=321 Identities=19% Similarity=0.181 Sum_probs=259.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 25 RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
+++..+.+++.+++..|+...........+|++.+++|+|..+.|++.++|.++.+++.|+...++| |+.||+.++
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~----r~~Rr~lLl 82 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTG----RLERRRLLL 82 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----ccchHHHHH
Confidence 3455677888889999999889999999999999999999999999999999999999999999999 999998776
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (452)
. ...+.+++..+..+++|+ +.++++|.+.++..+..++...++.+|+.|+++|+ ++.++...
T Consensus 83 ~-~l~lFi~~n~l~alAp~f---------------~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~--~Aiaiv~~ 144 (394)
T COG2814 83 G-LLALFIVSNLLSALAPSF---------------AVLLLARALAGLAHGVFWSIAAALAARLVPPGKRG--RALALVFT 144 (394)
T ss_pred H-HHHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchh--hHHHHHHH
Confidence 6 666777788888888776 88999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC
Q 012976 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (452)
+..++.++|..++.++.... |||..|+..+++.++..+..+..+| |++..++
T Consensus 145 G~tlA~v~GvPLGt~ig~~~---------------GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~----------- 196 (394)
T COG2814 145 GLTLATVLGVPLGTFLGQLF---------------GWRATFLAIAVLALLALLLLWKLLP--PSEISGS----------- 196 (394)
T ss_pred HHHHHHHHhccHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------
Confidence 99999999999888744332 9999999999999998888888888 2221111
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHH
Q 012976 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (452)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 344 (452)
++...++..+.+|+ +..+...+..++...+.+..+.|..+++. ++.+.+. +...+.++.++++
T Consensus 197 ----~~~~~~~~~~~l~~--p~v~~~l~~t~l~~~g~F~~ftYi~P~L~-~v~g~s~----------~~vs~~Ll~~Gv~ 259 (394)
T COG2814 197 ----LPGPLRTLLRLLRR--PGVLLGLLATFLFMTGHFALYTYIRPFLE-SVAGFSV----------SAVSLVLLAFGIA 259 (394)
T ss_pred ----CCcchhHHHHHhcC--chHHHHHHHHHHHHcchhhhHHhHHHHHH-HccCCCH----------hHHHHHHHHHHHH
Confidence 11223455778888 89999999999999999999999999984 3322221 2234556678999
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccc
Q 012976 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (452)
Q Consensus 345 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (452)
..+++++.|++.|| +.|+.+.....+.++.++.+.+.. . +.+...+...++|+..........
T Consensus 260 ~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~--------------~--~~~~~~~~~~~wg~a~~~~~~~~~ 322 (394)
T COG2814 260 GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG--------------A--SPALALALLFLWGFAFSPALQGLQ 322 (394)
T ss_pred HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc--------------c--hHHHHHHHHHHHHHHhhhhhhHHH
Confidence 99999999999999 999998888888888887776663 1 345555555566666555544444
Q ss_pred hhhhh
Q 012976 425 ALVSI 429 (452)
Q Consensus 425 ~~~~~ 429 (452)
...++
T Consensus 323 ~~~a~ 327 (394)
T COG2814 323 TRLAR 327 (394)
T ss_pred HHhcc
Confidence 44444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=219.79 Aligned_cols=364 Identities=18% Similarity=0.258 Sum_probs=266.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcch
Q 012976 24 ARAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRP 102 (452)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~ 102 (452)
.+.+.+.++.+.+++..++.++.+.....++..|. +..|+++..+|.+..+.-+..++..|+.|.++||+++|+||||+
T Consensus 5 ~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP 84 (467)
T COG2211 5 SSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRP 84 (467)
T ss_pred ccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccH
Confidence 34678899999999999999998888888888877 88999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhH
Q 012976 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAY 181 (452)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~ 181 (452)
+++.+.+..++...+.+.+++. +.........+...+.+++++....|..++.+|+.++ +||. +..++
T Consensus 85 ~lL~g~ip~~i~~~l~F~~p~~---------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~--~l~s~ 153 (467)
T COG2211 85 WLLWGAIPFAIVAVLLFITPDF---------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERA--SLTSW 153 (467)
T ss_pred HHHHHhHHHHHHHHHHHcCCCc---------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHH--HHHHH
Confidence 9998877777777777776653 1123345556777888899999999999999999876 5566 78899
Q ss_pred HHHHHHHHHHHHHhhccccccceecccccccccccc-ccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc
Q 012976 182 FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD-CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE 260 (452)
Q Consensus 182 ~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 260 (452)
...+.++|..+...+.+. +.....+.. ..+|+..-.+.+++..+..+.+++..+|+..+....++
T Consensus 154 R~~~~~~g~~l~~~~~~p---------lv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~----- 219 (467)
T COG2211 154 RMVFASLGGLLVAVLFPP---------LVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKT----- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHH---------HHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcc-----
Confidence 998888887776655322 222222211 34788888888888888888888888888763332211
Q ss_pred cccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHH
Q 012976 261 GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (452)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (452)
..+++..+++...++| |++..+++..++.+.+..........|.. ...+. ........+..
T Consensus 220 ------~~~~~~~~~~~~~~~N--rp~~~~l~~~l~~~~~~~i~~s~~~yy~~-y~lg~----------~~l~~~~~~~~ 280 (467)
T COG2211 220 ------GVKLKLKDSFLLIFKN--RPLLLLLLMNLLLFIAFNIRGSIMVYYVT-YVLGD----------PELFAYLLLLA 280 (467)
T ss_pred ------cccccHHHHHHHHHcc--chHHHHHHHHHHHHHHHHHHhhhhheeEE-EEcCC----------hHHHHHHHHHH
Confidence 0122333455567788 88888888777777665444433333331 11111 10112233333
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHh
Q 012976 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (452)
Q Consensus 341 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (452)
.....+++.++.+++.+|+|+|+++.++.++.+++.+++.+.. ..+.+..++...+.+++.+...
T Consensus 281 ~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~---------------~~~~~l~~~~~~i~~~g~~~~~ 345 (467)
T COG2211 281 SGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP---------------AGSVVLIVVALIIAGVGTGIAN 345 (467)
T ss_pred HHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc---------------CcchHHHHHHHHHHHHHhhccc
Confidence 4555556689999999999999999999999999998888874 1155666777788899999999
Q ss_pred hccchhhhhhcccc-----cCcccceeeeee
Q 012976 421 SVPYALVSIRTESL-----GLGQGGHFYGLY 446 (452)
Q Consensus 421 ~~~~~~~~~~~~~~-----~~g~g~~~g~~n 446 (452)
++++++++|..+-. .|-.|...+.++
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~t 376 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMT 376 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHH
Confidence 99999999987754 344566555543
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=213.48 Aligned_cols=331 Identities=14% Similarity=0.148 Sum_probs=239.2
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCC
Q 012976 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (452)
Q Consensus 51 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (452)
....|.+.++.++|.+|.|.+.+++.+.+.++..+.|.++| |.+.|+.+-. ++++..+..++++++++.
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD----r~npr~fm~~-gLilsai~nil~Gfs~s~------ 117 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSD----RSNPRYFMAF-GLILSAIVNILFGFSPSL------ 117 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcc----cCCCceeehH-HHHHHHHHHHHHhhhhHH------
Confidence 44556667889999999999999999999999999999999 8888875554 777777777777776553
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc--cccccceeccc
Q 012976 131 RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG--SFSGWFKILPF 208 (452)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~--~~~~~~~~~p~ 208 (452)
+.+.+...+.|...+..+|++...+..|+++++|| +..++.+.+.++|+.+.+.+. +.....
T Consensus 118 ---------~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG--~~~siWn~shNiGGal~~~~~~la~~~~~----- 181 (448)
T COG2271 118 ---------FLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERG--TWWSIWNTSHNIGGALAPLVALLAFFAFH----- 181 (448)
T ss_pred ---------HHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccC--ceEEEehhhhhcccchHHHHHHHHHHHhc-----
Confidence 77778888889999999999999999999999999 999999999999999988887 442111
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCC----CCCCcccccCccchHHHHHHH--HHHHHhc
Q 012976 209 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS----APFSEEGHEQSSDVHEAFLWE--LFGTFRY 282 (452)
Q Consensus 209 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 282 (452)
.+||..|++.+++.++..++.++..+|+|++..-++ +++..+..+++++++....++ .+-.++|
T Consensus 182 ----------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~N 251 (448)
T COG2271 182 ----------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKN 251 (448)
T ss_pred ----------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcC
Confidence 299999999999999999999999999987643211 111111101111111011122 2346778
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh--C
Q 012976 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--G 360 (452)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g 360 (452)
|.+|.+++..++.++.-+++..|.|.|+.|.. + + +...+.....++-++++.++++.||++||+ |
T Consensus 252 --k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k-~--------~--s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkg 318 (448)
T COG2271 252 --KLIWLLALANVFVYVVRYGINDWGPLYLSEVK-G--------F--SLVKANWAISLFEVAGLPGTLLAGWLSDKLFKG 318 (448)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-C--------C--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999997532 2 2 222334555567888999999999999997 5
Q ss_pred CchhHHH-HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 361 AGFIWGI-SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 361 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
||....+ .+++..++.+.+... |+. +.+...+++.+.|+......-+.-....|..|++.. |
T Consensus 319 rR~p~~~i~~~~i~~~~~~~w~~--------------~~~-~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~Aa--G 381 (448)
T COG2271 319 RRGPMALIFMLLITASLVLYWLA--------------PNG-SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAA--G 381 (448)
T ss_pred ccchHHHHHHHHHHHHHHHHHcC--------------CCc-cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhc--c
Confidence 6665443 333333444343333 222 456666777777766555444444556678777764 5
Q ss_pred ceeeeeeee
Q 012976 440 GHFYGLYVY 448 (452)
Q Consensus 440 ~~~g~~n~~ 448 (452)
++.|..++|
T Consensus 382 tA~Gf~Glf 390 (448)
T COG2271 382 TATGFVGLF 390 (448)
T ss_pred chhchhhhH
Confidence 666666654
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=230.71 Aligned_cols=352 Identities=23% Similarity=0.314 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
++...++.++.+.....+++.|. +.+|+++...|.+..+..+.+++.+|+.|.++||+++|+||||++++.+.+...++
T Consensus 6 y~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~ 85 (428)
T PF13347_consen 6 YGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALS 85 (428)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHH
Confidence 44555666666666666766665 77899999999999999999999999999999999999999999999888888888
Q ss_pred HHHHhcc-cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHHHHHHHHHHH
Q 012976 115 VLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 115 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~i 192 (452)
..+++.. +.- ...........+...+..++.+....+..++.+|+.++ ++|. +..+....+..+|.++
T Consensus 86 ~~llf~~~p~~--------~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~--~l~~~~~~~~~~g~~l 155 (428)
T PF13347_consen 86 FFLLFSPPPAG--------LSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERT--RLSSWRMIFSMIGSLL 155 (428)
T ss_pred HHHhhccccch--------hhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhh--hHHHHHHHHHHHHHHH
Confidence 8877765 311 11112334446667777899999999999999999985 5777 8899998888888876
Q ss_pred HHhhccccccceeccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHH
Q 012976 193 GYATGSFSGWFKILPFTLTSACNVDC-ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (452)
...+.+. +.....+... .+|++...+.+++..+..++..+..||++++.++++ ++.+
T Consensus 156 ~~~~~~~---------l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~-------------~~~~ 213 (428)
T PF13347_consen 156 ASFLAPI---------LVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQE-------------KKIS 213 (428)
T ss_pred HHHHhhh---------hhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccc-------------cccc
Confidence 6666544 2222222222 279999999988888888888888888222211110 1222
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 351 (452)
..+++++.++| |+++.+....++.+.++.....+.+.|. ++..+.+ ...........+...++.++
T Consensus 214 ~~~~~~~~~~n--r~~~~l~~~~~~~~~~~~~~~~~~~y~~-~~vl~~~-----------~~~~~~~~~~~~~~~v~~~~ 279 (428)
T PF13347_consen 214 LRDSLRSLFRN--RPFRILLLAFFLQWLAFALMNTFLPYYF-TYVLGNE-----------GLISIFMLIFFVASIVGSPL 279 (428)
T ss_pred cccchhhhccc--chHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHhcCc-----------hhhHHHHHHHHHHHHHHHHH
Confidence 33456677778 8899888888888877666655555544 3333322 11112223457777888899
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhc
Q 012976 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (452)
Q Consensus 352 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (452)
.++++||+|+|+.+..+..+.+++.+++.+.. + .+.+..++...+.|++.+.....++++++|..
T Consensus 280 ~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~i 344 (428)
T PF13347_consen 280 WGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG-------------P--GSPWLVLILFILAGIGYGAFFVIPWAMLADVI 344 (428)
T ss_pred HHHHHHHccceeehhhhHHHHHHHHHHHHHHH-------------h--hhHHHHHHHHHHhHhhhcccccccccccccch
Confidence 99999999999999999999999888887774 1 15677888889999999999999999999999
Q ss_pred ccc-----cCcccceeeeeeee
Q 012976 432 ESL-----GLGQGGHFYGLYVY 448 (452)
Q Consensus 432 ~~~-----~~g~g~~~g~~n~~ 448 (452)
+.+ +|..|...|+.+++
T Consensus 345 d~~e~~tg~r~~g~~~s~~~~~ 366 (428)
T PF13347_consen 345 DYDEWKTGRRREGMYFSVNSFF 366 (428)
T ss_pred hhHHHhcCCCchHHHHHhhhhh
Confidence 855 24457777666554
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=222.52 Aligned_cols=345 Identities=13% Similarity=0.115 Sum_probs=233.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
++.+.++.+.+++..++.+..+.....+++.|. +.+|+++.++|.+.++..+..++.+|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~i 83 (444)
T PRK09669 4 SQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYL 83 (444)
T ss_pred CcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhH
Confidence 456788888898888888877777777777776 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFS 183 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 183 (452)
+.+.+...++..+.+..++. +.....+.+++...+.+.+.++...+..++.+|+.++ ++|. +..++..
T Consensus 84 l~~~~~~~i~~~l~f~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~--~l~~~r~ 152 (444)
T PRK09669 84 LWFAIPFGVVCLLTFYTPDF---------GATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERH--SLQSWRF 152 (444)
T ss_pred HHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHH--HHHHHHH
Confidence 87766666666555554432 1122344555566666777888888899999999854 6677 7888888
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccc-cccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSAC-NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH 262 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 262 (452)
....+|..+++.+...+ . .... .....+|+..+.+.+++..+..+++++..+|++..++++
T Consensus 153 ~~~~~G~~i~~~~~~pl--------~-~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~~--------- 214 (444)
T PRK09669 153 ALSFIGGLIVSVIALPL--------V-DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVDN--------- 214 (444)
T ss_pred HHHHHHHHHHHHHHHHH--------H-HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCcC---------
Confidence 88888888776654221 0 0010 011237888888777777776666666677653321100
Q ss_pred cCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHH
Q 012976 263 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (452)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (452)
+.+..+++++.+|| |+++.++...++...+..........|. +...+ + .+..........
T Consensus 215 ------~~~~~~~~~~~~~n--~~~~~l~~~~~~~~~~~~~~~~~~~y~~-~~~~~-~----------~~~~~~~~~~~~ 274 (444)
T PRK09669 215 ------SSSVWKDLKLLLGN--SQWRIMFIFNVVLLTAVVTRGGATLYYV-NYVLL-R----------PDLATLFLVTGM 274 (444)
T ss_pred ------CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhhheee-eeecC-C----------HHHHHHHHHHHH
Confidence 11223466777888 8888887777666554433222222222 11111 0 011112222345
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhc
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (452)
+..+++.++.+++.||+|+|+.+..+..+.+++...+.+.. ++ +.+..++...+.|++.+...+.
T Consensus 275 i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~i~g~~~~~~~~~ 339 (444)
T PRK09669 275 IAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-------------PS--NVWLIFALNILFNFIQNLTTPL 339 (444)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-------------cc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 56667778999999999999998887766555443333331 11 4455566667889999999999
Q ss_pred cchhhhhhcccc
Q 012976 423 PYALVSIRTESL 434 (452)
Q Consensus 423 ~~~~~~~~~~~~ 434 (452)
++++++|..+.+
T Consensus 340 ~~am~ad~~d~~ 351 (444)
T PRK09669 340 QWSMFSDVVDYE 351 (444)
T ss_pred HHHHHHhhhhhh
Confidence 999999998744
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=227.59 Aligned_cols=352 Identities=15% Similarity=0.170 Sum_probs=239.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
+++..++.+..+.....+++++. +++|+++.+.|++.++..+..++.+|+.|+++||+++|+||||++++.+.+...++
T Consensus 4 yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~ 83 (437)
T TIGR00792 4 YGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIV 83 (437)
T ss_pred eecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHH
Confidence 34455666777777778888777 68999999999999999999999999999999999999999999888777766666
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccC-ccccchhhhhhHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVGNILG 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g~~ig 193 (452)
..+.+..++. . .....+.+++...+.+++.+....+..++..|..+ +++|+ +..++...+..+|..++
T Consensus 84 ~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~--~~~~~~~~~~~~g~~l~ 152 (437)
T TIGR00792 84 LVLLFTTPDF--------S-ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERE--SLSTFRRFGATLGGLLV 152 (437)
T ss_pred HHHHHhCCCC--------C-cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHH--HHHHHHHHHHHHHHHHH
Confidence 6666555432 1 11224455566667788888888888999999885 57788 89999988888888777
Q ss_pred HhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHH
Q 012976 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (452)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (452)
+.+.+.+. ....+ .....+|++.+.+.+++.++..++.++..||++++.++++ ++ +.+..
T Consensus 153 ~~~~~~l~-----~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~------~~------~~~~~ 212 (437)
T TIGR00792 153 AVIVLPLV-----SYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI------EK------KLSLK 212 (437)
T ss_pred HHHHHHHH-----HHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc------cc------CCCHH
Confidence 66543311 10100 0111389999998888887777777777787652211110 00 11122
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 012976 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 353 (452)
+.+++.++| |+++.++...++.+.+......+.+.|. +..++ ++ ...........+..+++.++.+
T Consensus 213 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~----------~~~~~~~~~~~i~~ii~~~~~~ 278 (437)
T TIGR00792 213 QIFKALFKN--DQLLILCLAYLFYNLAFNIKNGVQVYYF-TYVLG-DP----------ELFSYMGSIAIVAGLIGVLLFP 278 (437)
T ss_pred HHHHHHhCC--HHHHHHHHHHHHHHHHHHHHcchhheeE-eeecC-Ch----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777 8888888777777666554443333333 11111 00 1111222335677788899999
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
++.||+|+|+++..+..+.+++.+.+.+.. + +.+...+...+.|++.+...+..+++++|..+.
T Consensus 279 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 342 (437)
T TIGR00792 279 RLVKKFGRKILFAGGILLMVLGYLIFFFAG----S------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDY 342 (437)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHcc----h------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999988888777766655432 0 344455666778888888888889999988763
Q ss_pred c-----cCcccceeeeeeee
Q 012976 434 L-----GLGQGGHFYGLYVY 448 (452)
Q Consensus 434 ~-----~~g~g~~~g~~n~~ 448 (452)
+ .|.+|...|+.|.+
T Consensus 343 ~~~~~~~~~~G~~~~~~~~~ 362 (437)
T TIGR00792 343 GEWKTGVRAEGLVYSVRTFV 362 (437)
T ss_pred hhhhcCccchHHHHHHHHHH
Confidence 2 33357776666543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=218.16 Aligned_cols=324 Identities=17% Similarity=0.086 Sum_probs=219.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
...+...+.........|.+.+++|.++.+.+++.+...++..++.++.|+++| |+||||.++....+ ..++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~~~-~~~~~~~ 96 (406)
T PRK11551 22 LVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLAD----RIGRKRILIVSVAL-FGLFSLA 96 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHHH-HHHHHHH
Confidence 344444555566667778888999999999999999999999999999999999 99999988875444 4444444
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
..+.++ ++.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.+....+|..+++.++
T Consensus 97 ~~~~~~---------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~ 159 (406)
T PRK11551 97 TAQAWD---------------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRG--TAVSLMYCGVPFGGALASVIG 159 (406)
T ss_pred HHHhcc---------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 444443 356777888999998888888999999999999999 999999999999999998887
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHH
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452)
+..... .+|++.|++.+++.++..++...++||+++...++.+.+ .++...+...
T Consensus 160 ~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~ 214 (406)
T PRK11551 160 VLAAGD---------------AAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGK----------QRAPVLRALF 214 (406)
T ss_pred HHHccc---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcch----------hhhhhHHHHh
Confidence 552211 289999988876666665556666787654322110000 0111111111
Q ss_pred HHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012976 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~d 357 (452)
+..+. +..+.+....++.....+....|.+.++.+ .+.++. ..........++.++++++.|++.|
T Consensus 215 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~----------~~~~~~~~~~~~~~~~~~~~g~l~d 280 (406)
T PRK11551 215 GEGRA--TATLLLWISYFFTLIVLYFLLNWLPSLLVG--QGLSRS----------QAGLVQIAFNIGGALGSLLIGALMD 280 (406)
T ss_pred hhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCChh----------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 233333344444444455556667777632 222111 1123333456778889999999999
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCc
Q 012976 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (452)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 437 (452)
|+|+|+.+..+....+++++.+...+ +.+...+...+.|++.+...+..++++.|.+|+++|+
T Consensus 281 r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g 343 (406)
T PRK11551 281 RLRPRRVVLLIYAGILASLAALAAAP-----------------SFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG 343 (406)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcC-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh
Confidence 99999988877666666555544432 3344455566777777777778888999999998875
Q ss_pred cc
Q 012976 438 QG 439 (452)
Q Consensus 438 ~g 439 (452)
++
T Consensus 344 ~~ 345 (406)
T PRK11551 344 TG 345 (406)
T ss_pred hh
Confidence 43
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.4e-26 Score=216.70 Aligned_cols=321 Identities=15% Similarity=0.112 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+...+.+.+..+..........+.+|.+.+++|.++.+.|++.+.+.++..+++++.|.++| |+||||.++.+ .+
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~ 82 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTS----NVERRKLLIGL-FV 82 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCChHHHHHHH-HH
Confidence 33455555544444444445556778888999999999999999999999999999999999 99999988774 44
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
...++.....+.+++ +.+++.+.+.|++.+...+...+++.|++|+++|+ +++++...+.++|
T Consensus 83 ~~~~~~~~~~~~~~~---------------~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~g~~~~~~~~g 145 (390)
T PRK03545 83 LFIASHVLSALAWNF---------------TVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA--QALSLLATGTALA 145 (390)
T ss_pred HHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh--hHHHHHHHHHHHH
Confidence 555555555555554 67778888888888888888899999999999999 9999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchH
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
..+++.+++.+... .+||+.|++.+++.++..+......||++++++
T Consensus 146 ~~ig~~l~~~l~~~---------------~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~------------------ 192 (390)
T PRK03545 146 MVLGLPLGRVIGQY---------------LGWRTTFLAIGGGALITLLLLIKLLPLLPSEHS------------------ 192 (390)
T ss_pred HHHHhhHHHHHHHH---------------hcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCc------------------
Confidence 99999888763221 299999999888777666655555555432110
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 012976 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (452)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 349 (452)
...++.++.+|+ +.++......++..........|.++++. +.++.+.. ..........+..++++
T Consensus 193 -~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~g~s~~----------~~~~~~~~~~~~~~~g~ 258 (390)
T PRK03545 193 -GSLKSLPLLFRR--PALVSLYLLTVVVVTAHFTAYSYIEPFVQ-QVAGLSEN----------FATLLLLLFGGAGIIGS 258 (390)
T ss_pred -chHHHHHHHHhC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCcc----------HHHHHHHHHHHHHHHHH
Confidence 012244566777 67766655555555455555566676663 22222221 12223334567788899
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhh
Q 012976 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (452)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (452)
++.+++.||+++|+.. .+..+..++...+.... + +.+...+...+.|++.....+...+.+.+
T Consensus 259 ~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------------~---~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 321 (390)
T PRK03545 259 VLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-------------N---SEWHLSVLSIFWGIAIMCIGLAMQVKVLK 321 (390)
T ss_pred HHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh-------------c---hHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 9999999999987654 44444444443332221 0 34455556667777765555555566777
Q ss_pred hcccccCc
Q 012976 430 RTESLGLG 437 (452)
Q Consensus 430 ~~~~~~~g 437 (452)
..|+ .++
T Consensus 322 ~~~~-~~~ 328 (390)
T PRK03545 322 LAPD-ATD 328 (390)
T ss_pred hCCC-cHH
Confidence 6653 443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=213.40 Aligned_cols=317 Identities=13% Similarity=0.068 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
.+..+..+.+.+|.+.+++|.++.+.|++.+.+.++..+++++.|+++| |+|||+.++ ......+.+.......+
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~D----r~grr~~~~-~~~~~~~~~~~~~~~~~ 77 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLD----RAFKRWFLF-GSLATFAAAAGRLLDPF 77 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccchHHHH-HHHHHHHHHHHHHHHhc
Confidence 4567778888999999999999999999999999999999999999999 999887544 34444434332222212
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccc
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGW 202 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~ 202 (452)
+ +..+++.|++.|++.+. ..+.....+|++|+++|+ +++++...+..+|..+++.+++.+..
T Consensus 78 ~---------------~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~lG~~l~~~~~~~l~~ 139 (368)
T TIGR00903 78 N---------------YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRD--LVISLLSFAMYLGIIFALAAGLKIYT 139 (368)
T ss_pred c---------------HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 46788899999999885 455666779999999999 99999999999999999988877322
Q ss_pred ceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhc
Q 012976 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRY 282 (452)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (452)
. .+||+.|.+.+++.++..++.++.+||+|+++.++ .+ .++..++.++.+++
T Consensus 140 ~---------------~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~-------~~------~~~~~~~~~~ll~~ 191 (368)
T TIGR00903 140 A---------------GGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG-------FG------FKDAVKEFGALAGR 191 (368)
T ss_pred c---------------cchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC-------cc------hHHHHHHHHHHHcC
Confidence 1 29999999988888777777778888876442211 00 01112356678888
Q ss_pred chHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 012976 283 FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 362 (452)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 362 (452)
|.+|.+.+..++....++.+..|.|.|+.+. +.+. ..+ ... .+....+.+..++++||..||
T Consensus 192 --~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~----------~~~-~~~---~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 192 --KDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED----------IAG-DAV---ALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh----------HHH-HHH---HHHHHHHHHHHHHhhHHhhhh
Confidence 8899999999998888889999999998431 1111 111 111 222223334457777776543
Q ss_pred ---hhHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 363 ---FIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 363 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
+... ....+.++....+.... +....+....+.++......+..+++.+|.+|++.||+
T Consensus 254 ~~r~~~~~~~~~~~a~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt 316 (368)
T TIGR00903 254 GLRSIYIRAAALLIAAFFLALAFEL-----------------NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGK 316 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcc-----------------ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCc
Confidence 3322 23333333333332221 12233444455566666666667789999999998754
Q ss_pred cceeeeeee
Q 012976 439 GGHFYGLYV 447 (452)
Q Consensus 439 g~~~g~~n~ 447 (452)
+.|+.|.
T Consensus 317 --~~G~~~~ 323 (368)
T TIGR00903 317 --AAGAIGF 323 (368)
T ss_pred --ccchhhH
Confidence 4455443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=222.62 Aligned_cols=364 Identities=14% Similarity=0.160 Sum_probs=240.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHH
Q 012976 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~ 105 (452)
+.+.++.+.++++.++.++.+.....+++.|. +.+|+++.++|.+..+..+..++.+|+.|+++||+++|+||||++++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 34567788889998888888888888888887 66799999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhcc-CccccchhhhhhHHHH
Q 012976 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLT-GKDHRRTRVANAYFSL 184 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~ 184 (452)
.+.+...+++.+++..++. ......+.+++...+.+++++....+..++.+|+. ++++|. +..++...
T Consensus 82 ~g~i~~~i~~~llf~~p~~---------~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~--~l~~~~~~ 150 (473)
T PRK10429 82 IGTLANSVVLFLLFSAHLF---------EGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRERE--QLVPYPRF 150 (473)
T ss_pred hhhHHHHHHHHHHHcCCCC---------CccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHH--HHHHHHHH
Confidence 8887777776666544321 11223344555666778889999999999999999 577788 88888777
Q ss_pred HHHHHHHHHHhhccccccceecccccccccc-ccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 185 FMAVGNILGYATGSFSGWFKILPFTLTSACN-VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
+.++|+.+.+.+... .+ ....+ ....+|+....+.+++.++..+++++..||++..+.++.+ + +
T Consensus 151 ~~~ig~~~~~~~~~~--------~~-~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~--~---~- 215 (473)
T PRK10429 151 FASLAGFVTAGFTLP--------FV-NYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSA--E---G- 215 (473)
T ss_pred HHHHHHHHHHHHHHH--------HH-HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccc--c---c-
Confidence 777776666544321 00 00000 0112567776777666666666677767776432211100 0 0
Q ss_pred CccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHH
Q 012976 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (452)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 343 (452)
.+.+..+.++..++| |+++.++...++.+.+......+.+.|.. ...+ +. ...........+
T Consensus 216 ----~~~~~~~~~~~~~~n--~~~~~ll~~~~~~~~~~~~~~~~~~y~~~-y~~~-~~----------~~~~~~~~~~~i 277 (473)
T PRK10429 216 ----SHLTLKDIVALIYKN--DQLSCLLGMALAYNIASNIINGFAIYYFT-YVIG-DA----------DLFPYYLSYAGA 277 (473)
T ss_pred ----cCCCHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHhhheeeEEE-EECC-CH----------HHHHHHHHHHHH
Confidence 011122333445677 88888888777777655554444443331 1111 00 111122223456
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhcc
Q 012976 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (452)
Q Consensus 344 ~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (452)
..+++.++.+++.||+|+|+.+..+..+..++.+.+...... + ..+.+..++...+.|++.+......
T Consensus 278 ~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~i~~~l~g~~~~~~~~~~ 345 (473)
T PRK10429 278 ANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA-----------A-PHNALLIVIAGILLNIGTALFWVLQ 345 (473)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc-----------C-chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999999999988887766655554432100 1 0134455566677888888888888
Q ss_pred chhhhhhcccc-----cCcccceeeeee
Q 012976 424 YALVSIRTESL-----GLGQGGHFYGLY 446 (452)
Q Consensus 424 ~~~~~~~~~~~-----~~g~g~~~g~~n 446 (452)
+++++|.++.+ +|..|..+|..+
T Consensus 346 ~am~ad~id~~e~~tG~R~~G~~~s~~~ 373 (473)
T PRK10429 346 VIMVADTVDYGEYKLGIRCESIAYSVQT 373 (473)
T ss_pred HHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence 99999997743 344455665544
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=221.29 Aligned_cols=304 Identities=10% Similarity=-0.073 Sum_probs=203.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+++..+...+.++.............|.+.+++|.++.+.|++.+++.++..+++++.|+++| |+|||+.+.. +.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~G~r~~~~~-~~ 80 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLA----IIGARRWIAG-IM 80 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----HhChHHHHHH-HH
Confidence 344444555555554555566666677667999999999999999999999999999999999 9999998776 44
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
+...++..+..++++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+
T Consensus 81 ~~~~~~~~~~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~ 143 (412)
T TIGR02332 81 VLWGIASTATMFATGP---------------ESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRA--RANALFMIAMPV 143 (412)
T ss_pred HHHHHHHHHHHHhcCH---------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHH
Confidence 4445555555555553 66778899999999988888889999999999999 999999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCC---CCCCC--------C
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH---DQSAP--------F 257 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~---~~~~~--------~ 257 (452)
|..+++.+++.+.... ...+. .+||+.|++.++..++..++.++++||+|++.. +++++ +
T Consensus 144 g~~~~~~~~~~l~~~~---~~~~~------~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~ 214 (412)
T TIGR02332 144 TMALGLILSGYILALD---GLMAL------KGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDND 214 (412)
T ss_pred HHHHHHHHHHHHHhCC---CCCCc------cchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhc
Confidence 9999998877621100 00001 289999999888777777777778888875421 10000 0
Q ss_pred C-c-ccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhh
Q 012976 258 S-E-EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGA 335 (452)
Q Consensus 258 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 335 (452)
. + ++.++..++++...++..+.+++ +.++...+..++....+..+..|.|.++.+...+.++ ....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~----------~~~~ 282 (412)
T TIGR02332 215 QLTLEQPEGAFAHAAMPQRSMLREIFT--PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSN----------IMIG 282 (412)
T ss_pred cccccccccccccccccHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcH----------HHhH
Confidence 0 0 00000000000001112223344 6677777777777777888888999988431111111 1112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHH
Q 012976 336 LGLMLNSVVLGITSVLMEKLCRKWGAGFI-WGISNILMALC 375 (452)
Q Consensus 336 ~~~~~~~~~~~i~~~~~g~l~dr~g~~~~-~~~~~~~~~~~ 375 (452)
.......++..++.++.|+++||+++|+. ......+..++
T Consensus 283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~ 323 (412)
T TIGR02332 283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAG 323 (412)
T ss_pred HHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHH
Confidence 23344677788899999999999997774 33344343333
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-26 Score=214.05 Aligned_cols=337 Identities=17% Similarity=0.113 Sum_probs=229.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
...+...++.......+|.+..+.+.++.+.+++.++..++..+.+++.|+++| |+||||.++.+..+..+... .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~~~~~~~~~~~~~~-~ 80 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALAD----RYDRKKVMIGADLIRAVLVA-V 80 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHH----hhchhHHHHHHHHHHHHHHH-H
Confidence 344555566777778889999999999999999999999999999999999999 99999988875444333333 3
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
..+.... . ....+.+++.+.+.+++.+...+...+++.|++|+++|+ +++++.+....+|..+++.++
T Consensus 81 ~~~~~~~--------~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~ 148 (365)
T TIGR00900 81 LPFVALL--------G--GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLT--QANSLSQAVRSLFYIVGPGIG 148 (365)
T ss_pred HHHHHHc--------C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 3332210 0 013466778888899999999999999999999999999 999999999999999999998
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHH
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF 277 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (452)
+.+... .+|++.|++.++..++..+......++++++++++ + .+ ++..++..+..+
T Consensus 149 ~~l~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~---~~~~~~~~~~~~ 204 (365)
T TIGR00900 149 GLMYAT---------------LGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQ----A--LS---NAVLRDTREGIK 204 (365)
T ss_pred HHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc----c--cc---hhHHHHHHhHHH
Confidence 773221 28999998876655544433333222211110100 0 00 001122233445
Q ss_pred HHHhcchHHHHHHHHHHHHHHHhhHhHH-HhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012976 278 GTFRYFSGTIWIILIVTALTWLGWFPFL-LFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (452)
..+|+ |.++......++......... .+.+.|.. +.++.++ ...........++..++.++.+++.
T Consensus 205 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~ 271 (365)
T TIGR00900 205 FVLKN--PLLRTLLLLALLFNLVFAPAIVALFPYVQS-KYLGRGS----------THYGWVLAAFGLGALLGALLLGLLG 271 (365)
T ss_pred HHHcC--cHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhCCch----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666 677777766666665554444 55566553 2232221 1112333346777788899999999
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccC
Q 012976 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 357 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
||.+||+.+..+..+.+++...+.+.. + +.+...+...+.|++.+...+...+++.|..|+++|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 335 (365)
T TIGR00900 272 RYFKRMALMTGAIFVIGLAILVVGLTP--------------P--NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELL 335 (365)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHhhc--------------h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999988887777777666665553 1 245566677788998888888888999999999886
Q ss_pred cccceeeeee
Q 012976 437 GQGGHFYGLY 446 (452)
Q Consensus 437 g~g~~~g~~n 446 (452)
+ ...|+.|
T Consensus 336 g--~~~~~~~ 343 (365)
T TIGR00900 336 G--RVFGAQF 343 (365)
T ss_pred H--HHHHHHH
Confidence 4 4444443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=221.72 Aligned_cols=350 Identities=13% Similarity=0.039 Sum_probs=244.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+..+++..+...+........+|.+.+++|.+..+.+|+.+.+.++..+..++.|+++| |+|||+.++. +.+..
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D----~~Grk~~l~~-~~~~~ 81 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGD----RIGFKRLLML-GGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHH
Confidence 345556666777777788888899999999999999999999999999999999999999 9999998877 44445
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhcc-CccccchhhhhhHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLT-GKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
.++......+++. +.+++++.+.|++.+...+.....+.+.+ |+++|+ +++++......+|.
T Consensus 82 ~~~~~~~~~a~~~---------------~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~--~~~g~~~~~~~~g~ 144 (495)
T PRK14995 82 GLASLAAAFSPTA---------------SWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRN--MALGVWAAVGSGGA 144 (495)
T ss_pred HHHHHHHHHcCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHHHHHHH
Confidence 5555555555554 67788899999999888777777777765 678899 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc-----------
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE----------- 259 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~----------- 259 (452)
.+||.+++.+.... +||+.|++...+.++..++..+.+||+++++.++.+....
T Consensus 145 ~~gp~lgg~l~~~~---------------gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~ 209 (495)
T PRK14995 145 AFGPLVGGILLEHF---------------YWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLV 209 (495)
T ss_pred HHHHHHHHHhhccC---------------ChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHH
Confidence 99999998843322 9999999988777777777777777765332221110000
Q ss_pred ---ccccCccchHHH---------------HHHHH--------HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHH
Q 012976 260 ---EGHEQSSDVHEA---------------FLWEL--------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 313 (452)
Q Consensus 260 ---~~~~~~~~~~~~---------------~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (452)
.+.......... ..++. .+.+|+ |.+....+..++...+..+...+.+.|++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lq 287 (495)
T PRK14995 210 YSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTH--RIILSGVVMAMTAMITLVGFELLMAQELQ 287 (495)
T ss_pred HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000 00111 245666 66666666666666667777777888774
Q ss_pred hHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 012976 314 REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRG 393 (452)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
..++.++. .....+....+...+++++.|++.||+|+|+.+..+..+.+++..++....
T Consensus 288 -~v~g~s~~----------~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~---------- 346 (495)
T PRK14995 288 -FVHGLSPL----------EAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTD---------- 346 (495)
T ss_pred -HHcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhc----------
Confidence 33333222 223334446777888999999999999999988888888777776655442
Q ss_pred CCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeee
Q 012976 394 HDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYV 447 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~ 447 (452)
.+. +.+.......+.|++.+...+.....+.+..|+++++. +.++.|.
T Consensus 347 ---~~~-~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~--~~~~~~~ 394 (495)
T PRK14995 347 ---FST-QQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAA--AGAIETM 394 (495)
T ss_pred ---CCC-chHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcch--HHHHHHH
Confidence 111 23344566778899988888877888888888888654 4455444
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-25 Score=212.95 Aligned_cols=336 Identities=15% Similarity=0.122 Sum_probs=234.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
..+...+..+....+.....+..|.+.+++|.++.+.+++.+.+.++..+++++.|+++| |+||||.++.+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~~~ 80 (385)
T TIGR00710 6 FALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSD----RYGRRPVLLLG-LFIF 80 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHHH-HHHH
Confidence 344444444555566677778888888999999999999999999999999999999999 99999888774 4444
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
.++.......++. +.+.+.+++.+++.+...+...+++.|++|+++|+ ++.+..+....+|..
T Consensus 81 ~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~ 143 (385)
T TIGR00710 81 ALSSLGLALSNNI---------------ETLLVLRFVQAFGASAGSVISQALVRDIYPGEELS--RIYSILMPVLALAPA 143 (385)
T ss_pred HHHHHHHHHHccH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHH
Confidence 4455555444443 56777888899999988899999999999999999 999999999999999
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (452)
+++.+++.+... .+|++.|++.+++.++..++.++..||++++++++ +.++
T Consensus 144 ~g~~~~~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 194 (385)
T TIGR00710 144 VAPLLGGYILVW---------------LSWHAIFAFLSLAGILLSALIFFILPETLPYEARI--------------QIST 194 (385)
T ss_pred HHHHHHHHHHHH---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC--------------CHHH
Confidence 999888763221 28999999888777766666666666654322110 1222
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 351 (452)
..++.++.+|+ ++++...+...+..........+.+.++.+ .++.++ ...........+...++.++
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~g~~~~~~~~~~~~~~~~ 261 (385)
T TIGR00710 195 YFETFLLLLKS--KMFWGYALIYGASFGGFFAFFSGAPFVYID-IMGVSP----------SVFGLLFALNIIAMIFGGFL 261 (385)
T ss_pred HHHHHHHHHcC--chhHHHHHHHHHHHHHHHHHHHcChHHHHH-HcCCCH----------HHHHHHHHHHHHHHHHHHHH
Confidence 33455667777 777776666666665666666666766632 222211 11122233456777888999
Q ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhc
Q 012976 352 MEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (452)
Q Consensus 352 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (452)
.+++.||+++|+.+..+..+..++..++...... .............+.|++.+...+.......|..
T Consensus 262 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 329 (385)
T TIGR00710 262 NGRFIKKWGAKSLLRMGLILFAVSAVLLEITAIL------------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDF 329 (385)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999998888877777766665544210 0002334445566778888887777777777776
Q ss_pred ccccCcccceeeeee
Q 012976 432 ESLGLGQGGHFYGLY 446 (452)
Q Consensus 432 ~~~~~g~g~~~g~~n 446 (452)
|+ ++ |.+.++.|
T Consensus 330 ~~-~~--g~~~~~~~ 341 (385)
T TIGR00710 330 PH-VA--GTASALFG 341 (385)
T ss_pred cc-cc--hHHHHHHH
Confidence 63 33 44444443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=210.05 Aligned_cols=344 Identities=14% Similarity=0.147 Sum_probs=227.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
++.+.++.+.++++.++.+..+.....++..|. +.+|+++..+|.+..+..+..++.+|+.|+++||+++|+||||+++
T Consensus 4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i 83 (460)
T PRK11462 4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV 83 (460)
T ss_pred CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence 356778888999988888888888877777776 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFS 183 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 183 (452)
+.+.+...++..+++..++. +.......+.+...++.+++++...+..++.+|+.++ ++|. +..++..
T Consensus 84 l~g~i~~~i~~~llf~~p~~---------s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt--~l~s~r~ 152 (460)
T PRK11462 84 LFGALPFGIVCVLAYSTPDL---------SMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRI--SLQSWRF 152 (460)
T ss_pred hHHHHHHHHHHHHHHhCCCC---------CcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHH--HHHHHHH
Confidence 88877777777666655432 1122234455666677889999999999999999984 6677 8999999
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccc-cccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSAC-NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH 262 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 262 (452)
.+..+|..+++.+... .+ .... +....+|+....+.+++.+++..+++...+|+++.+.+
T Consensus 153 ~~~~iG~~~~~~~~~p--------lv-~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~~---------- 213 (460)
T PRK11462 153 VLATAGGMLSTVLMMP--------LV-NLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPT---------- 213 (460)
T ss_pred HHHHHHHHHHHHHHHH--------HH-HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCcc----------
Confidence 9988888777666422 11 1111 01113677766666666666666666666665322110
Q ss_pred cCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHH
Q 012976 263 EQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (452)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (452)
+.+..++++..++| |+++.+....++..............|. ...++. + ......+....
T Consensus 214 ------~~~~~~~l~~~~~N--k~~~~l~~~~~~~~~~~~~~~~~~~y~~-~y~~g~-~----------~~~~~~l~~~~ 273 (460)
T PRK11462 214 ------TTSMREDLRDIWQN--DQWRIVGLLTIFNILAVCVRGGAMMYYV-TWILGT-P----------EVFVAFLTTYC 273 (460)
T ss_pred ------CCCHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHhHhhhhh-hhhcCC-h----------HHHHHHHHHHH
Confidence 11123456677788 7787776665555544333222222222 111211 0 01112233456
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhc
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSV 422 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 422 (452)
+..+++.++.+++.||+++|+.+..+..+.++..+++.+.. .. +.....+...+.|++.+...+.
T Consensus 274 i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~l~g~~~~~~~~l 338 (460)
T PRK11462 274 VGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP--------------MQ-ASITMFVFIFVIGVLHQLVTPI 338 (460)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--------------hh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77778889999999999999887655554444333333331 11 2223344455667777777777
Q ss_pred cchhhhhhcccc
Q 012976 423 PYALVSIRTESL 434 (452)
Q Consensus 423 ~~~~~~~~~~~~ 434 (452)
++++++|..+.+
T Consensus 339 ~~~m~ad~~d~~ 350 (460)
T PRK11462 339 QWVMMSDTVDYG 350 (460)
T ss_pred HHHHHHHhHhhh
Confidence 888888887743
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=205.11 Aligned_cols=319 Identities=15% Similarity=0.117 Sum_probs=214.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.++.+.......+......+...+.+|++.+++|.++++.++..++..+...+++++.|+++| |+||||.++....
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~grr~~~~~~~~ 93 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQ----ATDRRYVVILFAV 93 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCcHHHHHHHHH
Confidence 344444444444444344445566788888999999999999999999999999999999999 9999998877554
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
+ ..++..+..+.++ ++.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.....++
T Consensus 94 ~-~~~~~~~~~~~~~---------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~--~a~~~~~~~~~~ 155 (394)
T PRK10213 94 L-LTLSCLLVSFANS---------------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVP--KALSVIFGAVSI 155 (394)
T ss_pred H-HHHHHHHHHHHCh---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHH--HHHHHHHHHHHH
Confidence 4 4445555555444 367788899999999988899999999999999999 999999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
|..+++.+++.+... .+||+.|++.+++.++..+......||+++++++ .
T Consensus 156 g~~ig~~l~~~l~~~---------------~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~---------------~ 205 (394)
T PRK10213 156 ALVIAAPLGSFLGEL---------------IGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH---------------Q 205 (394)
T ss_pred HHHHHHHHHHHHHhh---------------cCHHHHHHHHHHHHHHHHHHHHHHCCCCCccccc---------------c
Confidence 999999998873222 1899999988766665544444445654321100 0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 348 (452)
++ +.++.+|+ |.++...+..++...+......+.++++.++ ++.++ ..........+++..++
T Consensus 206 ~~----~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~----------~~~g~~~~~~~~~~iig 268 (394)
T PRK10213 206 KQ----NTFRLLQR--PGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL-AGFGV----------DGLTLVLLSFGIASFVG 268 (394)
T ss_pred hh----HHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCh----------hHHHHHHHHHHHHHHHH
Confidence 11 22456667 7777766655555555555555653333222 22221 11122333456778888
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHH-HHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALC-FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (452)
+++.+++.||.+ |+.+..+..+..++ +++....+ +.+.......+.|++.+...+...+.+
T Consensus 269 ~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~~ 330 (394)
T PRK10213 269 TSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWGS-----------------DKIVATGVAIIWGLTFALVPVGWSTWI 330 (394)
T ss_pred HHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 899999999954 44433443433333 33333322 344555667778888888888777788
Q ss_pred hhhcccc
Q 012976 428 SIRTESL 434 (452)
Q Consensus 428 ~~~~~~~ 434 (452)
.+..|++
T Consensus 331 ~~~~~~~ 337 (394)
T PRK10213 331 TRSLADQ 337 (394)
T ss_pred HHHCccc
Confidence 8887754
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-26 Score=222.03 Aligned_cols=342 Identities=10% Similarity=-0.022 Sum_probs=214.7
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
.......|.+.+++|.++.+.|++.+.+.++..+++++.|+++| |+||||.+.....+..+... ......
T Consensus 46 ~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~l~~~~~~~~~~~~-~~~~~~----- 115 (467)
T PRK09556 46 KNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYAD----GKNTKQFLPFLLILSAICML-GFGASL----- 115 (467)
T ss_pred cChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhh----ccCccchHHHHHHHHHHHHH-HHHHHH-----
Confidence 33445678888999999999999999999999999999999999 99999987664333333222 222110
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecc
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p 207 (452)
......++.+++.+.+.|++.+...+...++++|++|+++|+ +++|+.....++|..+++.+..+.....
T Consensus 116 -----~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg--~a~gi~~~~~~lG~~l~~~i~~~~~~~~--- 185 (467)
T PRK09556 116 -----GSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRG--RFLGFWNISHNLGGAGAGGVALWGANYF--- 185 (467)
T ss_pred -----hcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCcccee--eeEEeeecccchhhhHHHHHHHHHHHhh---
Confidence 001123467788899999999988899999999999999999 9999999999999999887764411100
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC--Ccc---cccCccchHHHHHHHH-HHHHh
Q 012976 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF--SEE---GHEQSSDVHEAFLWEL-FGTFR 281 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~-~~~~~ 281 (452)
...+|+..|.+.+++.++..++.+++.+|+|++....++++ .+. +++..++++....+.. ++.++
T Consensus 186 ---------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 256 (467)
T PRK09556 186 ---------FDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLK 256 (467)
T ss_pred ---------ccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHc
Confidence 01268888888777777666666666666554321110000 000 0000000000111111 23567
Q ss_pred cchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 012976 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA 361 (452)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~ 361 (452)
+ +.+|...+..++....+.....|.|.|+.+ .++.++. ..........++..++.++.|+++||+++
T Consensus 257 ~--~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~-~~g~s~~----------~a~~~~~~~~~~~~ig~~~~G~lsDr~g~ 323 (467)
T PRK09556 257 N--PVIWLLCFANIFLYIVRIGIDNWSPVYAFQ-ELGFSKE----------DAINTFTLFEIGALVGSLLWGWLSDLANG 323 (467)
T ss_pred C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 7 889988888888877777788889988843 2332221 12233344567788999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccce
Q 012976 362 GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGH 441 (452)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~ 441 (452)
|+.+.....+..++........ .+ +.+...+...+.|+..............|..|++.+ |.+
T Consensus 324 r~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~--g~a 386 (467)
T PRK09556 324 RRALVACIALALIIFTLGVYQH-------------AT--SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAI--GVA 386 (467)
T ss_pred CchHHHHHHHHHHHHHHHHHHh-------------cC--cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhH--HHH
Confidence 8876655444333322222211 00 233333444455543322222223566689998876 455
Q ss_pred eeeeeee
Q 012976 442 FYGLYVY 448 (452)
Q Consensus 442 ~g~~n~~ 448 (452)
.|+.|.+
T Consensus 387 ~gi~~~~ 393 (467)
T PRK09556 387 NGIKGTF 393 (467)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=209.36 Aligned_cols=340 Identities=11% Similarity=0.054 Sum_probs=195.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC---CCchhhHH---HHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQELG---IPHAWASI---IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~---~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
+..+...+.........|.+.++++ .+..+.+. +.+...++..++++++|+++| |+||||.++. +.+..
T Consensus 29 ~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D----r~Grr~~l~~-~~~~~ 103 (432)
T PRK10406 29 SGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD----KHGRKKSMLI-SVCMM 103 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHH-HHHHH
Confidence 3344444555554445555557774 45554333 334444555699999999999 9999998877 44555
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
.++.....+.+++. .........+++.|++.|++.+...+...++++|++|+++|+ ++.+....+...|.+
T Consensus 104 ~~~~~~~~~~~~~~-------~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg--~~~~~~~~~~~~G~~ 174 (432)
T PRK10406 104 CFGSLVIACLPGYE-------TIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKG--FYASFQYVTLIGGQL 174 (432)
T ss_pred HHHHHHHhhcCCch-------hHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCccc--HHHHHHHHHHHHHHH
Confidence 55555555555431 001123346778999999999999999999999999999999 888888888888887
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (452)
+++.+...... .+.+...+ ..+||+.|++.++..++. ++.....||+++.+.++ + +++
T Consensus 175 ~~~~~~~~~~~-----~~~~~~~~--~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~-------~------~~~- 232 (432)
T PRK10406 175 LALLVVVVLQQ-----TLEDAELR--EWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA-------L------KEA- 232 (432)
T ss_pred HHHHHHHHHHH-----hCCHHHHh--ccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh-------h------ccc-
Confidence 77765443110 00000000 139999999876655443 23333445543221100 0 001
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHH-HHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYFSGTIWIILIVTAL-TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 350 (452)
.+.++.+|+ ++.+...+...+ ....++.+..|.|.|+.+. ++.+. ...........+...++.+
T Consensus 233 --~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-~g~s~----------~~~~~~~~i~~~~~~i~~~ 297 (432)
T PRK10406 233 --GSLKGLWRN--RRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-AGMHA----------NVASGIMTAALFVFMLIQP 297 (432)
T ss_pred --ccHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHH
Confidence 123445566 666655544443 3555666777888887432 22111 1111222234555567778
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 351 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
+.|+++||++||+.+..+..+.++......... . + .+ +....+....+.+...+...+..+.+.+|.
T Consensus 298 ~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-~--------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 364 (432)
T PRK10406 298 LIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q-N--------VS--SPYAAFGLVMCALLIVSFYTSISGILKAEM 364 (432)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H-c--------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999987766554433332222111 0 0 00 122222222222223333334456788999
Q ss_pred cccccCcccce
Q 012976 431 TESLGLGQGGH 441 (452)
Q Consensus 431 ~~~~~~g~g~~ 441 (452)
+|++.|+++.+
T Consensus 365 fp~~~r~t~~g 375 (432)
T PRK10406 365 FPAQVRALGVG 375 (432)
T ss_pred CCCCccchhhh
Confidence 99998866444
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-25 Score=212.72 Aligned_cols=270 Identities=13% Similarity=0.054 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
.+...+.......++|.+.+++|.++.+.+++.+.+.++..+++++.|+++| |+|||+.+++ +.+...++..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~~~~-~~~~~~~~~~~~~ 106 (434)
T PRK11663 32 YALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSD----RSNARYFMGI-GLIATGIINILFG 106 (434)
T ss_pred HHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHh----hcCCchhHHH-HHHHHHHHHHHHH
Confidence 3333344445667888889999999999999999999999999999999999 9999988766 4444555555555
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+.++. +.+++.+.+.+++.+...+...+++.|++|+++|+ +++++.+...++|..+++.+++.
T Consensus 107 ~~~~~---------------~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 107 FSSSL---------------WAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERG--GWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred HHhHH---------------HHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54443 56666777788888888888899999999999999 99999999999999999988776
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC---CCcccccCccchHHHHHHHH
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP---FSEEGHEQSSDVHEAFLWEL 276 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 276 (452)
+... .+||+.|++.+++.++..++..+.+||+|.+...++.. ++.++.+++.++++...++.
T Consensus 170 l~~~---------------~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (434)
T PRK11663 170 IALH---------------YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEI 234 (434)
T ss_pred HHHc---------------ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhh
Confidence 3221 28999999887776666555556677765432111100 00000000000000112222
Q ss_pred H--HHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012976 277 F--GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (452)
Q Consensus 277 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 354 (452)
. ..+++ +.++.+....++.......+..|.+.|+.++ ++.++. ..........++..+++++.|+
T Consensus 235 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~~----------~a~~~~~~~~~~~~~g~~~~g~ 301 (434)
T PRK11663 235 LTKYVLLN--PYIWLLSFSYVLVYVVRAAINDWGNLYMSET-LGVDLV----------TANSAVSMFELGGFIGALVAGW 301 (434)
T ss_pred HHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCHH----------HHHHHHHHHHHHHHHHHHHHhh
Confidence 1 24556 7777777766666666667777888887422 222221 1223344467778899999999
Q ss_pred HHHhh
Q 012976 355 LCRKW 359 (452)
Q Consensus 355 l~dr~ 359 (452)
+.||+
T Consensus 302 l~dr~ 306 (434)
T PRK11663 302 GSDKL 306 (434)
T ss_pred hHHHh
Confidence 99998
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=212.62 Aligned_cols=333 Identities=14% Similarity=0.082 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
..+...........+.|.+.+++|.++.+.+++.++..++..++.++.|+++| |+|||+.++.+ .+...++..+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~~~~~~~~ 99 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLAD----RIGRKRVLLWS-ILLFSVFTLLC 99 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHH----HhhhHHHHHHH-HHHHHHHHHHH
Confidence 33444445555666777778999999999999999999999999999999999 99999887774 44444444555
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (452)
...++. +.+++.+.+.+++.+...+...+++.|++|+++|+ +++++......+|..+++.+++
T Consensus 100 ~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 100 ALATNV---------------TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRG--TAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHccch---------------HHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhc--hhHhhHhhHHHHHHHHHHHHHH
Confidence 444433 56677888889999988999999999999999999 9999999999999999998887
Q ss_pred ccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC--------------CCcccccC
Q 012976 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP--------------FSEEGHEQ 264 (452)
Q Consensus 199 ~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------------~~~~~~~~ 264 (452)
.+... .+|+..|++.+++..+..++.....||+++...+++++ ++.+++..
T Consensus 163 ~l~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (398)
T TIGR00895 163 WLIPV---------------FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALP 227 (398)
T ss_pred HHhhc---------------ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhcccccccccc
Confidence 63221 27888888876666666666666677765321111000 00000000
Q ss_pred ccchHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHH
Q 012976 265 SSDVHEAFLWELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (452)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (452)
+++.+++..++..+.+++. .+..+.+....++..........+.+.+. ++ ++.++ ...........
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~g~~~----------~~~~~~~~~~~ 295 (398)
T TIGR00895 228 EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM-VE-LGFSL----------SLAATGGALFN 295 (398)
T ss_pred ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-cCCCH----------HHHHHHHHHHH
Confidence 0000111111222212111 13334444444444445555555666433 11 22111 11223334467
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-HHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhh
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLI-LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (452)
++..++.++.+++.||+++|+.... ..+.++...++.. .. +.+.......+.|++.+...+
T Consensus 296 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 357 (398)
T TIGR00895 296 FGGVIGSIIFGWLADRLGPRVTALL-LLLGAVFAVLVGSTLF-----------------SPTLLLLLGAIAGFFVNGGQS 357 (398)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHH-HHHHHHHHHHHHHHhh-----------------CHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999854433 3333333333322 21 344456667788888888888
Q ss_pred ccchhhhhhcccccCcc
Q 012976 422 VPYALVSIRTESLGLGQ 438 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~g~ 438 (452)
..+++++|.+|+++|++
T Consensus 358 ~~~~~~~~~~~~~~~g~ 374 (398)
T TIGR00895 358 GLYALMALFYPTAIRAT 374 (398)
T ss_pred HHHHHHhhcCCHHHHHH
Confidence 88999999999988754
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=209.32 Aligned_cols=353 Identities=12% Similarity=0.053 Sum_probs=216.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.++......+..+...+.........|.+.+++|.++.+.+++.++..++..+++++.|+++| |+|||++++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~~~~~~- 84 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGD----RYGRRLPMVTSI- 84 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHH-
Confidence 344445555666666777777888888888999999999999999999999999999999999 999999888744
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
+..+++..+..+.+++ +.+++.+++.|++.+...+...+++.|++|+++|+ ++.++......+
T Consensus 85 ~~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~ 147 (405)
T TIGR00891 85 VLFSAGTLACGFAPGY---------------ITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRN--KASGLLISGYAV 147 (405)
T ss_pred HHHHHHHHHHHHhccH---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhh--HHHHHHHHHHHH
Confidence 4444444444444443 66778889999999999999999999999999999 999999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccc----cC
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGH----EQ 264 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~----~~ 264 (452)
|..+++.+++.+.... +.+||+.|.+.++..++ .++.....||++..++++++++...+. .+
T Consensus 148 g~~~~~~l~~~l~~~~-------------~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVW-------------GDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYG 213 (405)
T ss_pred HHHHHHHHHHHHHHhc-------------CccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhc
Confidence 9999998876622110 02599998876544433 334445567654322111111000000 00
Q ss_pred ccchHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHH
Q 012976 265 SSDVHEAFLWEL----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML 340 (452)
Q Consensus 265 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 340 (452)
.+...+...++. ++..++.++.+..+.....+..........+.+.|+.++ ++.++ .........
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~----------~~~~~~~~~ 282 (405)
T TIGR00891 214 GEHRIANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKAD-LGLSP----------HTVANIVVF 282 (405)
T ss_pred cchhhhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-hCCCH----------HHHHHHHHH
Confidence 000000101111 111111111122222222222333334445566666432 22111 111222334
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHh
Q 012976 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (452)
Q Consensus 341 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (452)
..++.++++++.+++.||+|+|+.+..+..+..+......... + +.+...+...+.++..+...
T Consensus 283 ~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~ 346 (405)
T TIGR00891 283 SNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG-------------A---NVAVLGLGLFFQQMLVQGIW 346 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC-------------C---chHHHHHHHHHHHHHHccch
Confidence 6777888999999999999999988777765533322222211 0 22333333345555555555
Q ss_pred hccchhhhhhcccccCcccceeeeee
Q 012976 421 SVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
+....+++|..|++++++ ++|+.|
T Consensus 347 ~~~~~~~~~~~~~~~~~~--~~g~~~ 370 (405)
T TIGR00891 347 GILPKHLGEYFPTDQRAA--GLGFTY 370 (405)
T ss_pred hhHHHHHhhhCCcchhHH--HhhHHH
Confidence 666688999999888654 444433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=219.22 Aligned_cols=348 Identities=14% Similarity=0.115 Sum_probs=238.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
.+....+...+........+|.+.+++|.++.+.+++.+.+.++..++.++.|+++| |+|||+.++.+. +...++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~-~~~~~~ 80 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAK----RFGTRRLFLIST-FAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHH----HhCcHHHHHHHH-HHHHHH
Confidence 344455555667777788889999999999999999999999999999999999999 999999887744 444555
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
.......++. +.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++......+|..+|+
T Consensus 81 ~~~~~~~~~~---------------~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~g~ 143 (485)
T TIGR00711 81 SLLCGVAPNL---------------ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRG--RAMAIWGLTVLVAPALGP 143 (485)
T ss_pred HHHHhCcCCH---------------HHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHhhhhh
Confidence 5555555443 67778899999999988899999999999999999 999999999999999999
Q ss_pred hhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCC------------------
Q 012976 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAP------------------ 256 (452)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------------ 256 (452)
.+++++... .+||+.|++.+.+.++..++..+..||+++++.++.+.
T Consensus 144 ~~~~~l~~~---------------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~ 208 (485)
T TIGR00711 144 TLGGWIIEN---------------YHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLS 208 (485)
T ss_pred ccHhHhccC---------------cCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 888773222 28999999887777666666666667654322221110
Q ss_pred CCcccccCccchHHH------------HHHH--------HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHh
Q 012976 257 FSEEGHEQSSDVHEA------------FLWE--------LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREI 316 (452)
Q Consensus 257 ~~~~~~~~~~~~~~~------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (452)
+.+++.......... ..++ -.+.+++ |+++...+..++..+.++....+.+.|+. +.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~ 285 (485)
T TIGR00711 209 EGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKY--RNFTIGCVYMSLLGLGLYGSFYLLPLYLQ-QV 285 (485)
T ss_pred hCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcC--CChHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 000000000000000 0000 1235566 66777777777777777777777888874 33
Q ss_pred hCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCC
Q 012976 317 YGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDL 396 (452)
Q Consensus 317 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (452)
++.++. ..........++..+++++.|++.||+|+|+.+..+..+.+++..++.+.. +
T Consensus 286 ~g~s~~----------~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---~--------- 343 (485)
T TIGR00711 286 LGYTAL----------QAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF---T--------- 343 (485)
T ss_pred cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC---C---------
Confidence 332221 122333446677888999999999999999998888888777776655321 0
Q ss_pred CCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeee
Q 012976 397 PPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYV 447 (452)
Q Consensus 397 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~ 447 (452)
++. ..+.......+.|++.+...+.......+..|++++| .+.|+.|.
T Consensus 344 ~~~-~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~ 391 (485)
T TIGR00711 344 PDT-PFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA--RGSSLSNF 391 (485)
T ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh--HHHHHHHH
Confidence 111 3344455567788888877766666777778888764 44555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=220.49 Aligned_cols=353 Identities=11% Similarity=0.081 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
........+|.+.+++|++..+.+++.+++.++.+++.+++|+++| |+|||+.+++...+ ..++.++..++++
T Consensus 182 d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsD----R~GRR~~lii~lil-~~i~~ll~afa~s-- 254 (742)
T TIGR01299 182 EVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLAD----KLGRKQCLLICLSV-NGFFAFFSSFVQG-- 254 (742)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHH-HHHHHHHHHHHhh--
Confidence 3344556677777899999999999999999999999999999999 99999988875444 4444444444444
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
++.+++++++.|++.++..+...+++.|++|+++|+ +..++...+..+|.++++.++..+...
T Consensus 255 -------------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg--~~~g~~~~~~~iG~ila~~la~~il~~-- 317 (742)
T TIGR01299 255 -------------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG--EHLSWLCMFWMIGGIYAAAMAWAIIPH-- 317 (742)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 367778899999999999999999999999999999 999999999999999998776542110
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC-------------------Cc-------
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF-------------------SE------- 259 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-------------------~~------- 259 (452)
+.+...........+||+.+++.++.. +..++..+++||+|+....+.+.+ ..
T Consensus 318 ~G~~~~~g~~~~~~gWR~l~~i~~lp~-ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~ 396 (742)
T TIGR01299 318 YGWSFQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNH 396 (742)
T ss_pred ccchhccccccccccHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHH
Confidence 000000000001137999888766544 444556677899876421110000 00
Q ss_pred ------cc---c-cCccc--------hH----HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhH-
Q 012976 260 ------EG---H-EQSSD--------VH----EAFLWELFGTFRYF-SGTIWIILIVTALTWLGWFPFLLFDTDWMGRE- 315 (452)
Q Consensus 260 ------~~---~-~~~~~--------~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 315 (452)
++ + ++... +. ...+.++++.++.. .++.+.+++..++..++++++..|+|..+.+.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~ 476 (742)
T TIGR01299 397 IKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQ 476 (742)
T ss_pred HHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00000 00 00111233333321 24445666677777778889999988765321
Q ss_pred --h-------hCCC----------CC--------------------------------------ccc-------------
Q 012976 316 --I-------YGGE----------PN--------------------------------------EGQ------------- 325 (452)
Q Consensus 316 --~-------~~~~----------~~--------------------------------------~~~------------- 325 (452)
- ++.+ .. ...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~ 556 (742)
T TIGR01299 477 ADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLF 556 (742)
T ss_pred HHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhc
Confidence 0 0000 00 000
Q ss_pred -------------------------cccccc-------chhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHH
Q 012976 326 -------------------------NYATGV-------RMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMA 373 (452)
Q Consensus 326 -------------------------~~~~g~-------~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (452)
..+... ........+.+++.+++.++.++++||+|||+++..+.++.+
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsa 636 (742)
T TIGR01299 557 ENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSC 636 (742)
T ss_pred cccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 000000 001122334567788899999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccc
Q 012976 374 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~ 440 (452)
++.+++.+.. +....+++.++.|+..+...+..+.+++|.+|++.|+++.
T Consensus 637 i~~ll~~~~~-----------------s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~ 686 (742)
T TIGR01299 637 ISCFFLSFGN-----------------SESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAF 686 (742)
T ss_pred HHHHHHHHHc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 8887777663 2333444555667777777778889999999999876543
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-25 Score=210.28 Aligned_cols=319 Identities=15% Similarity=0.108 Sum_probs=214.4
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.+...++.|.+.+++|.++.+.+++.+++.++..+++++.|+++| |+|||++++.+. +...++.....+.++.
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d----~~G~r~~~~~~~-~~~~~~~~~~~~~~~~-- 91 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLAD----KFGPRAVAMLGG-ILYGLGFTFYAIADSL-- 91 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HcCccchhHHhH-HHHHHHHHHHHHHHHH--
Confidence 344556778888999999999999999999999999999999999 999999988744 4444455555555443
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
+.+++.+.+.|++.+...+.....+.|++| ++|+ ++.++...+.++|..+++.+.+...
T Consensus 92 -------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~----- 150 (377)
T TIGR00890 92 -------------AALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRG--LASGIIIGGYGLGSFILSPLITSVI----- 150 (377)
T ss_pred -------------HHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccH--HHHHHHHHhcchhHhHHHHHHHHHH-----
Confidence 667778888888888777777788888887 5788 8999999999998877655543311
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHH
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGT 286 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (452)
+. .+||+.|++.+++.++..+..+++.+|+++++.++++ + . + .++ ++.++.+++ ++
T Consensus 151 ----~~------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~---~-~~~---~~~~~~~~~--~~ 206 (377)
T TIGR00890 151 ----NL------EGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNI-E----V---S-VKD---YTVWEMLRT--PQ 206 (377)
T ss_pred ----hc------ccHHHHHHHHHHHHHHHHHHHHHheecCchhccccCc-c----c---c-hhh---hhHHHHHcC--cc
Confidence 11 2899999998888777777666666655432211100 0 0 0 011 133456666 66
Q ss_pred HHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Q 012976 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 366 (452)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~ 366 (452)
++.+....++..........+.+.|.. + ++. +............+...+++++.+++.||+|||+.+.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~ 274 (377)
T TIGR00890 207 FWVLYLSFFLNAVSGLLLIGLYKPYGQ-S-LGL----------SDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMS 274 (377)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH-H-cCC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 766665555554444444444455432 2 111 1111122333467778889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeee
Q 012976 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
.+..+.+++.+.+.+.+ .. .....+....+.|++.+...+...++++|.+|+++++ ...|+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~ 337 (377)
T TIGR00890 275 IVFGISAVGMAAMLFIP--------------ML-NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA--ANYGFLY 337 (377)
T ss_pred HHHHHHHHHHHHHHHcc--------------cc-hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh--hHhHHHH
Confidence 88888877776665542 10 1222334445667777777777778899999998865 4444443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=214.58 Aligned_cols=332 Identities=16% Similarity=0.067 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
.........|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++.+. +...++.....+.++
T Consensus 9 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~~-~~~~~~~~~~~~~~~-- 81 (399)
T TIGR00893 9 DRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLD----RFGARKTLAVFI-VIWGVFTGLQAFAGA-- 81 (399)
T ss_pred HHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHH----hcCcceeeHHHH-HHHHHHHHHHHHHcC--
Confidence 3344555667777999999999999999999999999999999999 999999887744 444444444444444
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
.+.+++.+.+.|++.+...+...+++.|++|+++|+ +++++......+|..+++.+++.+...
T Consensus 82 -------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~l~~~-- 144 (399)
T TIGR00893 82 -------------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERA--TAVSIFNSAQGLGGIIGGPLVGWILIH-- 144 (399)
T ss_pred -------------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHH--HHHHHHHHhchHHHHHHHHHHHHHHHh--
Confidence 367778899999999999999999999999999999 999999999999999999887762221
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc---cc---ccCccchHHHHHHHHHHH
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE---EG---HEQSSDVHEAFLWELFGT 279 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 279 (452)
.+|++.|++.+++.++..++..+..||+++++....+++++ ++ +.+.++.++...++.++.
T Consensus 145 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (399)
T TIGR00893 145 -------------FSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKEL 211 (399)
T ss_pred -------------CCchHHHHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHH
Confidence 28999999888777776666666677665432211110000 00 000000111112345566
Q ss_pred HhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012976 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 359 (452)
+++ |+++...+..++.......+..+.+.|+.+. ++.++ ...........+...++.++.+++.||+
T Consensus 212 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 278 (399)
T TIGR00893 212 LKD--RRVWGLALGQFLVNIGLGFFLTWFPTYLVQE-RGLSI----------LEAGFMASLPGIVGFIGMILGGRLSDLL 278 (399)
T ss_pred hcC--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-hcccH----------HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 8888888888888877778888888887432 22111 1112233345677788899999999999
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 360 GAGFI-WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 360 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
++|+. +........++.+......... +.....+.......+.+.+.+ ..+..+++++|..|+++|++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~ 347 (399)
T TIGR00893 279 LRRGKSLVFARKTAIIAGLVLSLLMFAT----------NYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGL 347 (399)
T ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHH
Confidence 99861 1111111111111111110000 000022223333333333333 67778899999999988754
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=208.21 Aligned_cols=355 Identities=13% Similarity=0.070 Sum_probs=221.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTP-YVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+......+.....+....+++|. +.+++|.++.+.+++.++..++..+++++.|+++| |+|||+.+++. .+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~ 78 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVD----KFGPRYTTTLS-LLLLA 78 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHH----HhCchHHHHHH-HHHHH
Confidence 34444555555567777888886 56899999999999999999999999999999999 99999988774 44455
Q ss_pred HHHHHHhccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 113 VAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 113 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
++.....+.+ + ++.+++.+.+.|++.+ ...+..++++|++|+++|+ ++.++.....++|..
T Consensus 79 i~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~ 140 (366)
T TIGR00886 79 IPCLWAGLAVQS---------------YSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQG--TALGLAAGWGNMGGG 140 (366)
T ss_pred HHHHHHHHHhhh---------------HHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhh--HHHHHHHHHhHHHHH
Confidence 5555555544 3 3666778888888755 4466788999999999999 999999888888888
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHH-HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFF-LDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (452)
+++.+++.+... ......+....+||+.|+ ..+++..+..++.....+|++++++++++.+.+++.+. .++
T Consensus 141 ~~~~i~~~l~~~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 212 (366)
T TIGR00886 141 VAQFVMPPIIGS-----LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWS---VGT 212 (366)
T ss_pred HHHHHHHHHHHH-----HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhccccccccc---ccc
Confidence 877776541110 000000001137999884 44555545555555556665543222111111100000 011
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHH
Q 012976 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 350 (452)
...++.++.+++ ++++...+..++.......+..+.+.|+.+ .++.++. ..........+..+++.+
T Consensus 213 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~~~~ 279 (366)
T TIGR00886 213 GALGDQLKVFRD--RHTWILALLYSVTFGSFLGVSSIFAMFFKD-QFGLSKV----------TAGAYASLGGLLGSLARP 279 (366)
T ss_pred hhHHHHHHHHhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHH----------HHHHHHHHHHHHHHHHhh
Confidence 122244566777 677777777666666666777778887743 3332221 112223345667778889
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 351 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
+.+++.||+|+|+.+..+.....++..++.... ....+.+.......+.++..+...+..++++.+.
T Consensus 280 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 346 (366)
T TIGR00886 280 LGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL-------------VSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHI 346 (366)
T ss_pred ccchHHHhhccchhHHHHHHHHHHHHHHHHhcC-------------CCcchHHHHHHHHHHHHHHhccccchhhhcchhh
Confidence 999999999999888777766666555554432 0000223333334444455555555566778888
Q ss_pred cccccCcccceeeeeeee
Q 012976 431 TESLGLGQGGHFYGLYVY 448 (452)
Q Consensus 431 ~~~~~~g~g~~~g~~n~~ 448 (452)
.|+ + .|...|+.+..
T Consensus 347 ~~~-~--~g~~~g~~~~~ 361 (366)
T TIGR00886 347 FRR-A--TGAVSGLVGAI 361 (366)
T ss_pred chh-h--cccHHHHHHHh
Confidence 763 3 35666665543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=211.71 Aligned_cols=336 Identities=22% Similarity=0.304 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLT-PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
..+...+......+.+| .+.+++|.++.+.+++.+++.++..++.++.|+++| |+||||.++. +.+..+++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~l~~-~~~~~~~~~~~ 78 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSD----RFGRRRVLII-GLLLFALGSLL 78 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHH----HS-HHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCeeeEee-hhhhhhhHHHH
Confidence 44555566677777888 566899999999999999999999999999999999 9999996666 44445544333
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
..++++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.....++|..+++.++
T Consensus 79 ~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~ 141 (352)
T PF07690_consen 79 LAFASNF---------------WLLLIARFLLGIGSGFFSPASNALIADWFPPEERG--RAFGILSAGFSLGSILGPLLG 141 (352)
T ss_dssp HHHHCCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhH---------------HHHhhhccccccccccccccccccccccchhhhhh--hccccccchhhhhhhcccchh
Confidence 3333333 57788899999999999999999999999999999 999999999999999999998
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHH-H
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE-L 276 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 276 (452)
+.+.... +|++.|++.+++.++..++...+.++++++++++++.+++ +++++...+ .
T Consensus 142 ~~l~~~~---------------~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 199 (352)
T PF07690_consen 142 GFLISYF---------------GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------SKKPKPLKPGF 199 (352)
T ss_dssp HHCCCHC---------------HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT---------HHHCCCH-C
T ss_pred hhhhhcc---------------ccccccccccchhhhhhhhHhhhhhhcccccccccccccc-------ccccccccccc
Confidence 8743222 8999999998888777665555565554444333221110 001111112 2
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012976 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (452)
+...++ +.+|......++..+.+.....+.+.|+.+. ++.+ +............+...++.++.+++.
T Consensus 200 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~ 267 (352)
T PF07690_consen 200 KSLFKN--PVLWILLIAFFLFFFVFSGFSFFLPLYLQEV-LGFS---------GPSQAGLLFSIFGIVGIIGSLLAGRLS 267 (352)
T ss_dssp THHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH-HHCC---------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc--chhhhhhhhhhHHHHHHHHhhcccchhhhhc-cCCC---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344 4455444444555556666777777775322 2211 011122223445677777789999999
Q ss_pred HhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccC
Q 012976 357 RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 357 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
||+++|+..........+....+...... .+....+....+.|++.+...+...+++.+..|++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 333 (352)
T PF07690_consen 268 DRFGRRRRLLIAILLLILGALGLLLLPFS--------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYR 333 (352)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCSHHH--------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHH
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 99999887777666666655555443210 0334555677788999998899999999999998886
Q ss_pred cccceeeeee
Q 012976 437 GQGGHFYGLY 446 (452)
Q Consensus 437 g~g~~~g~~n 446 (452)
|...|+.|
T Consensus 334 --g~~~g~~~ 341 (352)
T PF07690_consen 334 --GTAFGLFN 341 (352)
T ss_dssp --HHHHHHHH
T ss_pred --HHHHHHHH
Confidence 44555444
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-24 Score=205.55 Aligned_cols=328 Identities=16% Similarity=0.156 Sum_probs=214.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
++++..+....+...++.....+.+|.++ +++|.++.+.|++.+++.++..+++++.|+++| |+||||+++.+..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~~~ 89 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYAD----TLGPKKAVVFGLC 89 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHh----ccCCcchHHHHHH
Confidence 45566666667777778888889999876 789999999999999999999999999999999 9999999887544
Q ss_pred HHHHHHHHHHh--cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 109 ISIAVAVLLIG--LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 109 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
+..+.+..+.. +.++ .....+..+++.+++.|++.+...+...+++.|+.|+++|+ +++++.+...
T Consensus 90 ~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~ 157 (399)
T PRK05122 90 GCALSGLLYLLAGLLAA----------WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTG--RVISWNGIAT 157 (399)
T ss_pred HHHHHHHHHHHhhhhhc----------cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhc--cchhhhhhhh
Confidence 43333332221 1111 11123456788899999999988888889999999999999 9999999999
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
.+|..+|+.+++.+... .+|+..+++..++.++..+ .....|+++ .++ + +
T Consensus 158 ~~g~~~g~~l~~~l~~~---------------~g~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~----~--~----- 207 (399)
T PRK05122 158 YGALAIGAPLGVLLYHW---------------GGLAGLGLLIMLLALLGLL-LARPRPAVP---PVK----G--E----- 207 (399)
T ss_pred hHHHHHHHHHHHHHHHc---------------ccHHHHHHHHHHHHHHHHH-HHhcCCCCC---CCC----c--c-----
Confidence 99999999888763221 1788887765544332222 111112111 100 0 0
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
+++ . ++.+++ .+.......+..+++.....+.+.|+.+. + ............++..
T Consensus 208 --~~~-~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~ 263 (399)
T PRK05122 208 --RLP-F---RRVLGR----VWPYGMGLALASIGFGTIATFITLYYAAR--G------------WDGAALALTLFGVAFV 263 (399)
T ss_pred --chh-H---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c------------cccchHHHHHHHHHHH
Confidence 001 1 111111 11111222223333444455566655321 1 1111223334566777
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
++.++.+++.||+++|+.+..+..+.+++...+...+ +.+..++...+.|++.+...+.....
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~G~~~~~~~~~~~~~ 326 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-----------------SPWMALIGAALTGFGFSLVFPALGVE 326 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 8889999999999999988888887777776665543 34455566678888888777766677
Q ss_pred hhhhcccccCcccceeeeee
Q 012976 427 VSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 427 ~~~~~~~~~~g~g~~~g~~n 446 (452)
+.+..|++++| .+.|+.|
T Consensus 327 ~~~~~~~~~~g--~~~g~~~ 344 (399)
T PRK05122 327 AVKRVPPQNRG--AALGAYS 344 (399)
T ss_pred HHHhCCHHHHH--HHHHHHH
Confidence 77888888764 4444433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=203.17 Aligned_cols=337 Identities=14% Similarity=0.130 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
++.++...+..+.....+....+..+.+.+ ++|+|++|.+++.+++.+.+.+..++.|++.| |+|.|+++.+...
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~D----r~G~R~v~~~~~l 108 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVP----IFGGRRWTVFSTA 108 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHHHH
Confidence 344444444433333466666666776665 89999999999999999999999999999999 9999998877544
Q ss_pred HHHHHHHHHHhcc-cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 109 ISIAVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 109 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
+ ..+..+...+. ++ ...+++.+++.+.+.|++ +..+++....+++++|+++|| +++|+.....+
T Consensus 109 l-~~i~~~~~~~a~~~-----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG--~A~Gi~~g~G~ 173 (462)
T PRK15034 109 I-LIIPCVWLGIAVQN-----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQG--SALGINGGLGN 173 (462)
T ss_pred H-HHHHHHHHHHHHcc-----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhH--HHHHHHHHHHh
Confidence 4 44444444432 11 112357788888888887 667788899999999999999 99999977777
Q ss_pred HHHHHHHhhccccccceeccccccc---cccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTS---ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (452)
+|..+++.+.+.+....++...... .......+|+.+.++..++.++..++.+++.++.+..+
T Consensus 174 ~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~-------------- 239 (462)
T PRK15034 174 LGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSR-------------- 239 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc--------------
Confidence 7776666555431100000000000 00000126888888877777766666666655533210
Q ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHH
Q 012976 265 SSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (452)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 344 (452)
...++.++.+|+ ++.|.+++.+++.+.++.++..++|.|... .+. . .. ......+..+.
T Consensus 240 ------~~~~~~~~vlk~--~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~----------~-~~-~l~~~~l~~l~ 298 (462)
T PRK15034 240 ------ASIADQLPVLQR--LHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFP----------D-VN-ILRLAFFGPFI 298 (462)
T ss_pred ------cCHHHHHHHhCC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC----------h-HH-HHHHHHHHHHH
Confidence 113466778898 889999999999888888888888888743 221 0 01 11112234666
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC--CchHHHHHHHHHHHhHHhHhHhhc
Q 012976 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP--NGIVIAALIIFTILGGPLAITYSV 422 (452)
Q Consensus 345 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~ 422 (452)
..+.++++|+++||+|+++++.++++++.++........ |. ..+.+.....+..+.++.|..+..
T Consensus 299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l-------------p~~~~~~~~~~~~~~~~l~~~~G~gngs 365 (462)
T PRK15034 299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL-------------PGTGSGNFIAFYAVFMGLFLTAGLGSGS 365 (462)
T ss_pred HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh-------------ccccccHHHHHHHHHHHHHHHhcccchH
Confidence 778889999999999999999988887777664433332 11 113444444444445566666666
Q ss_pred cchhhhhhccc
Q 012976 423 PYALVSIRTES 433 (452)
Q Consensus 423 ~~~~~~~~~~~ 433 (452)
.+.++.+++|+
T Consensus 366 vfk~ip~~f~~ 376 (462)
T PRK15034 366 TFQMIAVIFRQ 376 (462)
T ss_pred HHHhhHHHHhh
Confidence 67888888874
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-24 Score=202.67 Aligned_cols=336 Identities=12% Similarity=0.060 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccccc-CCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT-SRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~-~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
....+.+|.+.++.|+|.++.|++... .+...+ .+++|.++||.+ +|+||||++++.+.+...+......+..+.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~-- 80 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPS-- 80 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcc--
Confidence 445567888899999999999999755 444444 899999999764 346999988766666666555444444221
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
...+.+.....+.+.+.+...++..+++.|++|+++|+ ++.++...+..+|.++++.+++.+....
T Consensus 81 ----------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~l~~~l~~~~-- 146 (356)
T TIGR00901 81 ----------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELG--YGSTIYIVGYRAGMLLSGSLALVLASPE-- 146 (356)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhc--hHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Confidence 12334444455566777777888999999999999999 9999999999999999998887632211
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcch-H
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS-G 285 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 285 (452)
... +....+||..|++.++..++..++.++..||++++++++ + + .+++..+.+++.+++.. +
T Consensus 147 ---g~~--~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-----~----~---~~~~~~~~~~~~~~~~~~~ 209 (356)
T TIGR00901 147 ---FAN--TGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-----K----P---LTQAVLKPIREFFQRKNMI 209 (356)
T ss_pred ---ccc--cccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-----h----h---HHHHHHHHHHHHHHhcCch
Confidence 000 001125999999888776665555555556643211100 0 0 01112223444555511 2
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHH---HHHHHHHHHHHHHHHHHHhhCCc
Q 012976 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM---LNSVVLGITSVLMEKLCRKWGAG 362 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~i~~~~~g~l~dr~g~~ 362 (452)
.++.+.+..++...+......+.+.|+.+ ++. +....+.. ...+..+++.++.+++.||+|+|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~------------~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 275 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD--MGF------------SKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL 275 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCC------------CHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 36666666666666666777778888743 222 22222222 12345667889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
+.+..+.++.+++..++.+......+. + .+. .+.+.......+.+++.+...+...++++|.+|++++|+
T Consensus 276 ~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~ 345 (356)
T TIGR00901 276 YALLLFGIVQALTNAGFVWLASNGHHD---G--ITF-PHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGAT 345 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc---c--ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHH
Confidence 988888887777666555432000000 0 000 133445556667788888889999999999999999754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=209.26 Aligned_cols=345 Identities=14% Similarity=0.105 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
.+..+.+....+...+......+.+|.+.+++|.++.+.+++.+.+.++..++.++.|+++| |+||||.++.. ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~r~~~~~~-~~ 83 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLAD----RVGVRNIFFTA-IV 83 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHH-HH
Confidence 44566677777777777778888999999999999999999999999999999999999999 99999988764 34
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
....+.....+.++. +.+++.+.+.|++.+...+...+++.|.+|+++|+ ++.++.....++|
T Consensus 84 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g 146 (471)
T PRK10504 84 LFTLGSLFCALSGTL---------------NELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM--AAMTFVTLPGQVG 146 (471)
T ss_pred HHHHHHHHHHHhCCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHH
Confidence 444444444444432 56677889999999988888999999999999999 8999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC------------
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF------------ 257 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------------ 257 (452)
..+|+.+++.+... .+||+.|++...+..+..+......|+.+..+.+.+...
T Consensus 147 ~~~g~~~~g~l~~~---------------~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~ 211 (471)
T PRK10504 147 PLLGPALGGLLVEY---------------ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLT 211 (471)
T ss_pred HHhhhHHHHHHHhh---------------ccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHH
Confidence 99999988773221 289999998877666666655555555432211110000
Q ss_pred ---Cccccc-Ccc---------------------chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHH
Q 012976 258 ---SEEGHE-QSS---------------------DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWM 312 (452)
Q Consensus 258 ---~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (452)
++.+.. ... +..++...+ .+.+|| |+++......++...+......+.+.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 288 (471)
T PRK10504 212 LALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRT--RTFSLGLAGSFAGRIGSGMLPFMTPVFL 288 (471)
T ss_pred HHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcc--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000 000000001 235667 7788877777777766655555666666
Q ss_pred HhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 012976 313 GREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392 (452)
Q Consensus 313 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (452)
. +.++.++. ...+......+...++.++.+++.||+|+|+++..+..+.++...++.+..
T Consensus 289 ~-~~~g~~~~----------~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--------- 348 (471)
T PRK10504 289 Q-IGLGFSPF----------HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA--------- 348 (471)
T ss_pred H-HHcCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---------
Confidence 3 22232211 112233334555666778999999999999999888887777766655442
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
+. ...+.......+.|++.+...+....++.+.+|++.++.+
T Consensus 349 ----~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~ 390 (471)
T PRK10504 349 ----LL-GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSG 390 (471)
T ss_pred ----cc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccch
Confidence 11 1223333445566777777777777888888888876543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-24 Score=203.10 Aligned_cols=313 Identities=13% Similarity=0.103 Sum_probs=207.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
..+...++.....+.+|.++ +++|.++.+.|++.+++.+...+.+|+.|+++| |+||||.++..+.+...++..+
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~ 80 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSD----YQGDRKGLILFCCLLAALACLL 80 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCchHHHHHHHHHHHHHHHH
Confidence 34555667788889999887 689999999999999999999999999999999 9999998776555555555444
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhh--hhHHHHHHHHHHHHHHh
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVA--NAYFSLFMAVGNILGYA 195 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~~g~~ig~~ 195 (452)
..++++. +.+++.+.+.+.+.+...+...++..|..|+++|+ ++ .+......++|..+++.
T Consensus 81 ~~~~~~~---------------~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~ig~~ 143 (375)
T TIGR00899 81 FAWNRNY---------------FLLLVLGVLLSSFASTANPQLFALAREHADRTGRE--AVMFSSVMRAQISLAWVIGPP 143 (375)
T ss_pred HHhcchH---------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchh--hHHHHHHHHHHHhHHHHHhhh
Confidence 5544443 44555666666666666777788888988877766 44 57777788899999988
Q ss_pred hccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHH
Q 012976 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (452)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (452)
+++.+... .+||+.|++.+++.++..++.++.+||.++++.+++ + + .+
T Consensus 144 ~~~~l~~~---------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~----~~ 191 (375)
T TIGR00899 144 LAFWLALG---------------FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL------T-------R----LE 191 (375)
T ss_pred HHHHHHHh---------------cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc------C-------c----ch
Confidence 87763221 289999999888777776666666787654322110 0 0 01
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012976 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l 355 (452)
.++.+++ ++++.+....++.+........+.+.|+.+ .++.++.. .............++.++.+++
T Consensus 192 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~----------~g~~~~~~~~~~~~~~~~~g~l 258 (375)
T TIGR00899 192 VRGLLAS--RDTRLLFVACTLMWGCNILYIINMPLLIIH-ELGLPDKL----------AGLMMGTAAGLEIPFMLLAGYL 258 (375)
T ss_pred hhhhhcC--cchHHHHHHHHHHHHHHHHHHhhhHHHHHH-HcCCCHHH----------HHHHHHHHHHHHHHHHHhHHHH
Confidence 1223445 556655555555444444444556666532 22322111 1122222344456677899999
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 356 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
.||+|+|+.+..+.++..+.+..+...+ +.+.......+.|++.+...+....++.|..|++
T Consensus 259 ~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~ 320 (375)
T TIGR00899 259 IKRFGKRRLMLLAALAGVAFYTGLAADN-----------------SLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR 320 (375)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 9999999988777766555544443332 3444555566677777777777778888887764
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-24 Score=202.52 Aligned_cols=326 Identities=15% Similarity=0.134 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
.++...+..+......+...+.+|.++ +++|.|+.+.|++.+++.+...+.+|+.|+++| |+||||+++.+....
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~D----r~g~r~~l~~~~~~~ 91 (392)
T PRK12382 16 SLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLAD----QYGAKRSALQGMLAC 91 (392)
T ss_pred cHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHH----hhcchHHHHHHHHHH
Confidence 344444455555566777788888876 789999999999999999999999999999999 999999887744333
Q ss_pred HHHHHH--HHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 111 IAVAVL--LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 111 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
.+.+.. .....+ ......++.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.+.+..+
T Consensus 92 ~~~~~~~~~~~~~~----------~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~a~~~~~~~~~~ 159 (392)
T PRK12382 92 GLAGLAYLLAAILP----------VSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSG--KVMSWNGMAMYG 159 (392)
T ss_pred HHHHHHHHhhhccc----------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccc--hhhhHHHHHHHH
Confidence 222221 111111 111234567788899999999888888888999999999999 999999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
|..+++.+++.+... .+|++.+.+..+..++.. ...++.++.+.++ + +
T Consensus 160 g~~~g~~~~~~l~~~---------------~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~----~------ 207 (392)
T PRK12382 160 ALAAGAPLGLLLHSH---------------FGFAALALTTMVLPLLAW----AFNGTVRKVPAHA---G----E------ 207 (392)
T ss_pred HHHHHHHHHHHHHhc---------------cChHHHHHHHHHHHHHHH----HHHHhccCCCCCc---c----c------
Confidence 999999888763221 178876665433322221 1122221111110 0 0
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 348 (452)
+ +..++..+.+.. +.+ ..++...+......+.+.|+.+. + ............++.+++
T Consensus 208 ~-~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~ 265 (392)
T PRK12382 208 R-PSLWSVVGLIWK--PGL-----GLALQGVGFAVIGTFVSLYFASK--G------------WAMAGFTLTAFGGAFVLM 265 (392)
T ss_pred C-chHHHHHHHHHH--hHH-----HHHHHHHHHhHHHHHHHHHHHhc--C------------CchhHHHHHHHHHHHHHH
Confidence 0 001111111111 111 12222233334455566665321 1 111123333456666788
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (452)
+++.|++.||+|+|+.+..+..+.+++.+++.+.+ +.+..++...+.|++.+...+...+.+.
T Consensus 266 ~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 328 (392)
T PRK12382 266 RVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP-----------------TAWVALAGAALTGAGCSLIFPALGVEVV 328 (392)
T ss_pred HHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc-----------------cHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 89999999999999998888888877776655542 3444556667788888877777677888
Q ss_pred hhcccccCcccceeeeee
Q 012976 429 IRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 429 ~~~~~~~~g~g~~~g~~n 446 (452)
+..|+++||+ +.|+.|
T Consensus 329 ~~~~~~~~g~--~~g~~~ 344 (392)
T PRK12382 329 KRVPSQVRGT--ALGGYA 344 (392)
T ss_pred HhcCHHHHHH--HHHHHH
Confidence 8888888644 444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-24 Score=204.02 Aligned_cols=340 Identities=12% Similarity=0.043 Sum_probs=222.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
....+..+...++...+........+|.+.+++|.++.+.|++.+.+.++..+++++.|+++| |+||||+++.+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~d----r~G~r~~l~~g~~ 99 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITGLF 99 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHH
Confidence 344445555666666677777788889888999999999999999999999999999999999 9999998887444
Q ss_pred HHHHHHHHHH---hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHH
Q 012976 109 ISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (452)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (452)
...++.++. ...++ ++.+++++++.|++.+...+..++++.|..++++|. ..++..+..
T Consensus 100 -~~~~~~~l~~~~~~a~~---------------~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~--~~~s~~~~~ 161 (438)
T PRK10133 100 -LYALGAALFWPAAEIMN---------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQTF 161 (438)
T ss_pred -HHHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHH--HHHHHHHHH
Confidence 444444332 22333 467788999999999999999999999987777666 678889999
Q ss_pred HHHHHHHHHhhccccccceeccccc---------cc---cccccccchhHHHHHHHHHHH-HHHHHHHhccccCCCCCCC
Q 012976 186 MAVGNILGYATGSFSGWFKILPFTL---------TS---ACNVDCANLKSAFFLDVIFIA-ITTCISASAAHEVPLGSHD 252 (452)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~p~~~---------~~---~~~~~~~~~~~~f~~~~~~~~-~~~~~~~~~~~e~~~~~~~ 252 (452)
..+|..+++.+++.+... ..|... +. .......+||+.|+....+.. +..++.....||.+.+ +
T Consensus 162 ~~~G~~~g~~~g~~l~~~-~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~--~ 238 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILS-NVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--N 238 (438)
T ss_pred HHHHHHHHHHHHHHHHhc-CCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc--c
Confidence 999999999887642100 001000 00 000000256777764433333 2222223333432111 0
Q ss_pred CCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccc
Q 012976 253 QSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR 332 (452)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 332 (452)
+ ++ + ++.+..++.++.+++ |.++...+..++..........|.+.|+.++.++.++ .
T Consensus 239 ~---~~--~------~~~~~~~~~~~ll~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~----------~ 295 (438)
T PRK10133 239 H---SD--A------KQGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA----------G 295 (438)
T ss_pred c---cc--c------cccchhhhHHHHHhC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCH----------H
Confidence 0 00 0 011122344566777 7777666666666666666666777775333333222 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHH
Q 012976 333 MGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTIL 412 (452)
Q Consensus 333 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (452)
..........++..+++++.+++.||+|+|+++..+..+.++.+.+..+.. .. ..+..+.+.
T Consensus 296 ~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~-~~~~~~~l~ 357 (438)
T PRK10133 296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GH-VGLIALTLC 357 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-----------------Ch-HHHHHHHHH
Confidence 223444557788889999999999999999998888777665554443331 11 234556788
Q ss_pred hHHhHhHhhccchhhhhhcccc
Q 012976 413 GGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 413 g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
|++.+..++..++...+..|++
T Consensus 358 glg~~~i~P~~~s~a~~~~~~~ 379 (438)
T PRK10133 358 SAFMSIQYPTIFSLGIKNLGQD 379 (438)
T ss_pred HHHHHHHHHHHHHHHHcccchh
Confidence 9999999999999999987664
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=204.82 Aligned_cols=340 Identities=15% Similarity=0.093 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
...........|.+.+++|.++.+.+++.++..++..++.++.|+++| |+|||+.++.+ .+...++..+..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~~~~~~~~~~~ 82 (379)
T TIGR00881 8 YLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSD----RSNPRVFLPIG-LILCAIVNLFFGFSTS 82 (379)
T ss_pred HHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHH----hhCCeehhHHH-HHHHHHHHHHHHHhhh
Confidence 344455556677777999999999999999999999999999999999 99999988774 4444555555555544
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH-hhcccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY-ATGSFSGW 202 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~-~~~~~~~~ 202 (452)
.+.+++.+.+.|++.+...+...+++.|++|+++|+ ++.++.+....+|..+++ .++.....
T Consensus 83 ---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~~~~ 145 (379)
T TIGR00881 83 ---------------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERG--TWVSFWNCSHNVGGGLLPPLVLFGIAE 145 (379)
T ss_pred ---------------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhhe--eeEeehhccchhHHHHHHHHHHHHHHh
Confidence 367778888999999988999999999999999999 999999999999999998 34433211
Q ss_pred ceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC---Cc-ccc-cCccchHHHHHHHHH
Q 012976 203 FKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF---SE-EGH-EQSSDVHEAFLWELF 277 (452)
Q Consensus 203 ~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~~~~ 277 (452)
. .+|++.|++.+++.++..++.++..||+++++..+++++ ++ +++ ++++++.+......+
T Consensus 146 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (379)
T TIGR00881 146 L---------------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQ 210 (379)
T ss_pred c---------------CCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHH
Confidence 1 289999988887777766777777777654322111110 00 000 000000111112334
Q ss_pred HHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012976 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~d 357 (452)
+.+++ +.++.+.+..++.......+..+.+.|+.+. ++.++ ...........+...++.++.+++.|
T Consensus 211 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~~ 277 (379)
T TIGR00881 211 YVLLN--KVLWYISLGYVFVYVVRTGILDWSPLYLTQE-KGFSK----------EKASWAFTLYELGGLVGTLLAGWLSD 277 (379)
T ss_pred HHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCH----------HHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 55666 7788887777777777777777888887432 22211 11223333456777888999999999
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCc
Q 012976 358 KWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (452)
Q Consensus 358 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 437 (452)
|..+|+..................... . +. .+.........+.|............+++|..|++.|+
T Consensus 278 r~~~~~~~~~~~~~~~~~~~~~~~~~~---~--------~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 345 (379)
T TIGR00881 278 KLFNGRRGPLAVFFMALIIVSLLVYWL---N--------PA-ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG 345 (379)
T ss_pred HHcCCcchHHHHHHHHHHHHHHHHHhc---C--------cc-hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH
Confidence 864333222222211111111111110 0 10 02333344445555544444555567889999988864
Q ss_pred ccceeeeeee
Q 012976 438 QGGHFYGLYV 447 (452)
Q Consensus 438 ~g~~~g~~n~ 447 (452)
.+.|+.|.
T Consensus 346 --~~~g~~~~ 353 (379)
T TIGR00881 346 --TAAGFVGF 353 (379)
T ss_pred --HHHHHHHH
Confidence 44444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-24 Score=206.92 Aligned_cols=341 Identities=11% Similarity=0.028 Sum_probs=204.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
..+..........++.|.+.+++|++..+.+++.+.+.++..+++++.|+++| |+|||+.+.. +.+...++..+.
T Consensus 44 ~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~G~r~~~~~-~~~~~~~~~~~~ 118 (476)
T PLN00028 44 SFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCD----LYGPRYGSAF-LLMLTAPAVFCM 118 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHH-HHHHHHHHHHHH
Confidence 33333445556667778888999999999999999999999999999999999 9999987766 444455555555
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (452)
.+.++. +.+++.+++.|++.+.. .+...+++|++|+++|+ +++++.+...++|..+++.+.+
T Consensus 119 ~~~~s~---------------~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg--~a~g~~~~~~~~g~~~~~~~~~ 180 (476)
T PLN00028 119 SLVSSA---------------TGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVG--TANGIAAGWGNLGGGVTQLLMP 180 (476)
T ss_pred HHhcCH---------------HHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhhee--HHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 45566777888777654 34566789999999999 9999998877888877766654
Q ss_pred ccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHH
Q 012976 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (452)
Q Consensus 199 ~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (452)
.... .+.+.. .....+||+.|++.+++.++..++.+++.+++|+.+.++.++ +.+. ++++..+.+++
T Consensus 181 ~i~~-----~~~~~~-~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~----~~~~---~~~~~~~~~~~ 247 (476)
T PLN00028 181 LVFP-----LIKDAG-APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKK----SGTM---PKDSFSKVLRY 247 (476)
T ss_pred HHHH-----HHHhcC-CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHh----cCcc---ccccHHHHHHH
Confidence 3110 000000 000128999999988887776666665554444321111000 0000 01111234455
Q ss_pred HHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012976 279 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr 358 (452)
.+++ +++|.+.+..++.......+..+.+.|+.+. ++.++ ........+..++..+++++.|+++||
T Consensus 248 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~a~~~~~~~~~~~~ig~~~~G~lsDr 314 (476)
T PLN00028 248 GVTN--YRTWILALTYGYSFGVELTMDNIIAEYFYDR-FGLSL----------ETAGAIAASFGLMNLFARPAGGYLSDV 314 (476)
T ss_pred HHcC--chhHHHHHHHHHHHHHHHHHHhHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 6677 6777776666555555555666677776432 22211 112233334678888999999999999
Q ss_pred hCCch-------hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhc
Q 012976 359 WGAGF-------IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (452)
Q Consensus 359 ~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (452)
++||+ .......+.+++.+++...+ +.+.......+.+++.+...+..++++.+..
T Consensus 315 ~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 377 (476)
T PLN00028 315 AARRFGMRGRLWALWIVQTLGGVFCIWLGRAN-----------------SLGAAIVVMILFSIFVQAACGATFGIVPFVS 377 (476)
T ss_pred HHHhcCcchhHHHHHHHHHHHHHHHHHhcccc-----------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccC
Confidence 98652 22222222222222222121 2333344445555555555555566666654
Q ss_pred ccccCcccceeeeeeee
Q 012976 432 ESLGLGQGGHFYGLYVY 448 (452)
Q Consensus 432 ~~~~~g~g~~~g~~n~~ 448 (452)
| +.+ |...|+.|..
T Consensus 378 ~-~~~--g~~~g~~~~~ 391 (476)
T PLN00028 378 R-RSL--GVISGLTGAG 391 (476)
T ss_pred h-hhc--hhhhhhhhcc
Confidence 4 343 5566665543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=201.69 Aligned_cols=331 Identities=15% Similarity=0.162 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-----hHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAW-----ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-----~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
........+..........+++|.+.+++|.+..+ .|++.++..+...+++|+.|+++| |+|||+.++..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~- 90 (408)
T PRK09874 16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLAD----RKGRKIMLLRS- 90 (408)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhCcHHHHHHH-
Confidence 33444555666677788888999999999988654 488889999999999999999999 99999987774
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.+...++..+....++ ++.+++.+.+.+++.+ ..+...+++.|..|+++|+ ++++.......
T Consensus 91 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 152 (408)
T PRK09874 91 ALGMGIVMVLMGLAQN---------------IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSG--WALGTLSTGGV 152 (408)
T ss_pred HHHHHHHHHHHHHHhh---------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhh--HHHHHHHHHHH
Confidence 4444444444444433 3566677777777654 4566778889999999999 99999999999
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccc
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+|..+++.+++.+... .+|++.|++.+++.++..+...+..||+++..+++
T Consensus 153 ~g~~~~~~~~~~l~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 203 (408)
T PRK09874 153 SGALLGPLAGGLLADS---------------YGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-------------- 203 (408)
T ss_pred HHHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch--------------
Confidence 9999999888763211 28999999888777766666666677654221111
Q ss_pred hHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 268 VHEAFLWELFGTFRYFSGTIWI-ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
++...++..+.+++ ++++. +....+...........+.+.|..+. .+ +... .+. ..........+...
T Consensus 204 -~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~-----~~~-~~g~~~~~~~l~~~ 272 (408)
T PRK09874 204 -EMLHMREVVTSLKN--PKLVLSLFVTTLIIQVATGSIAPILTLYVREL-AG-NVSN-----IAF-ISGMIASVPGVAAL 272 (408)
T ss_pred -hhhHHHHHHHhCcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cchH-----HHH-HHHHHHHHHHHHHH
Confidence 00112234455566 44433 23323333333333444555555321 11 0000 000 01111223456667
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
++.+..|++.||+|||+.+..+..+..++.+...+.+ +.+...+...+.|++.+...+...++
T Consensus 273 ~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (408)
T PRK09874 273 LSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-----------------TPLQLGILRFLLGAADGALLPAVQTL 335 (408)
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHhhhHhhHHHHHHH
Confidence 7788899999999999998888877766665554443 34555566677888888888777788
Q ss_pred hhhhcccccCcccceeeee
Q 012976 427 VSIRTESLGLGQGGHFYGL 445 (452)
Q Consensus 427 ~~~~~~~~~~g~g~~~g~~ 445 (452)
+.+..|++++| ..++..
T Consensus 336 ~~~~~~~~~~g--~~~~~~ 352 (408)
T PRK09874 336 LVYNSSNQIAG--RIFSYN 352 (408)
T ss_pred HHHhCCcccce--eeehHH
Confidence 88888877654 444443
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=199.69 Aligned_cols=281 Identities=16% Similarity=0.205 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
++.+....+..........+.+|.+.+++|.+..+.+++.+...++..+++++.|+++| |+|||+.+.. +.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~-~~~~~~ 79 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSS----RYSLKHILLF-LVALCV 79 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHc----cCccHHHHHH-HHHHHH
Confidence 44555566666666677788999999999999999999999999999999999999999 9999998877 444455
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
++..+..++++. +.+++.+.+.|++.+...+...+.+.|+.++++|+ ++++....+..+|..+
T Consensus 80 ~~~~l~~~~~~~---------------~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~ 142 (382)
T PRK10091 80 IGNAMFTLSSSY---------------LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVT--AAVAGMVSGMTVANLL 142 (382)
T ss_pred HHHHHHHHhCcH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhh--HHHHHHHHHHHHHHHH
Confidence 555666665554 67778899999988887777888899999999999 8999999999999999
Q ss_pred HHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHH
Q 012976 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (452)
++.+++.+... .+||+.|++.+++.++..+...+..||.+++++. +.+
T Consensus 143 g~~l~~~l~~~---------------~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------~~~-- 190 (382)
T PRK10091 143 GIPLGTYLSQE---------------FSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------GLR-- 190 (382)
T ss_pred hccHHHHHhhh---------------ccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------CHH--
Confidence 98887663221 2899999998877766665556667765321100 011
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 012976 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 352 (452)
+..+.+|+ ++.+......++...+.+....|.++++. +.++.++ ...........++.++++++.
T Consensus 191 --~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~----------~~~~~~~~~~~~~~~ig~~~~ 255 (382)
T PRK10091 191 --EQFHFLRS--PAPWLIFAATMFGNAGVFAWFSYIKPYMM-FISGFSE----------TSMTFIMMLVGLGMVLGNLLS 255 (382)
T ss_pred --HHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCH----------HHHHHHHHHHHHHHHHHhHHH
Confidence 11234555 55555554444444444444555566553 2222211 122233344677788999999
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHH
Q 012976 353 EKLCRKWGAGFIWGISNILMALCFLAMLIL 382 (452)
Q Consensus 353 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 382 (452)
+++.||+|+|+.+..+..+.+++.+++...
T Consensus 256 g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~ 285 (382)
T PRK10091 256 GRLSGRYSPLRIAAVTDFIIVLALLMLFFF 285 (382)
T ss_pred heeccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888777776555443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.3e-24 Score=205.16 Aligned_cols=334 Identities=13% Similarity=0.103 Sum_probs=205.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
.....+..+...+......+..|.+.+++|.++.+.+++.+++.++..+++++.|+++| |+|||+.++.+. +...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~d----r~g~r~~l~~~~-~~~~ 94 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLAD----KFGRKPLMMWSI-VAYS 94 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHHH-HHHH
Confidence 34444444555556666667777777999999999999999999999999999999999 999999887744 4444
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
++.....+.++ .+.+++.+.+.|++.+...+....++.|++|+++|+ ++.++...+..+|.++
T Consensus 95 ~~~~~~~~~~~---------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~lg~~~ 157 (426)
T PRK12307 95 VGTGLSGLASG---------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKS--KASAFLVSGFGIGNII 157 (426)
T ss_pred HHHHHHHHHhH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhh--HhhhHHHHHHhHHHHH
Confidence 45555555544 367788899999999988889999999999999999 9999999999999999
Q ss_pred HHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHH
Q 012976 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (452)
++.+.+.+... .+||+.|++.....+ ..+......||+++.++++.+.+. ++ .+...+..
T Consensus 158 ~~~l~~~l~~~---------------~~w~~~f~i~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~--~~--~~~~~~~~ 217 (426)
T PRK12307 158 AAYFMPSFAEA---------------YGWRAAFFVGLLPVL-LVIYIRARAPESKEWEEAKLSGKG--KH--SQSAWSVF 217 (426)
T ss_pred HHHHHHHHccc---------------CCHHHHHHHHHHHHH-HHHHHHHHCCCChHHHHhhhhccc--cc--cccchhhh
Confidence 88776542211 289999987543322 222222223443321111100000 00 00001111
Q ss_pred HHHHHHHHhcchHHHHHHHHHHH---HHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 012976 273 LWELFGTFRYFSGTIWIILIVTA---LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 349 (452)
..+.++.+++ +.++....... ...........+.+.|+.+ .+.++ ...........++..+++
T Consensus 218 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~----------~~~~~~~~~~~~~~~~g~ 283 (426)
T PRK12307 218 SLSMKGLFNR--AQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG--EGFDT----------GVVSNLMTAAAFGTVLGN 283 (426)
T ss_pred hHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHH
Confidence 2234555666 44443332222 2222223345567777642 12111 111222334567788889
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHh--HhHhhccchhh
Q 012976 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPL--AITYSVPYALV 427 (452)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~ 427 (452)
++.+++.||++||+.+..+.++..+....+.... .+ ... .....+.|.+. ....+....++
T Consensus 284 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 284 IVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-------------QD--NYL--LLGACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-------------cc--cHH--HHHHHHHHHHHhcccHhHHHHHHH
Confidence 9999999999999988888777665554443331 00 111 11222223222 12233444678
Q ss_pred hhhcccccCccc
Q 012976 428 SIRTESLGLGQG 439 (452)
Q Consensus 428 ~~~~~~~~~g~g 439 (452)
.|.+|++.+|++
T Consensus 347 ~~~~p~~~~g~~ 358 (426)
T PRK12307 347 YDYFPLEVRGLG 358 (426)
T ss_pred HHhCcHHHHhhh
Confidence 899999886553
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-24 Score=207.37 Aligned_cols=355 Identities=9% Similarity=0.032 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh-hHH-----HHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAW-ASI-----IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~-~g~-----~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+...++.+...+....+....|.+.++++.+.++ .++ ..++..++..+++++.|+++| |+|||+++++ +
T Consensus 19 ~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~-~ 93 (490)
T PRK10642 19 TAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGD----KYGRQKILAI-T 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHH-H
Confidence 3344455555566666666666666777543322 122 135667888999999999999 9999998887 4
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.++..++.++..++++++. ........+++.+++.|++.+...+...++++|++|+++|+ ++.++...+..
T Consensus 94 ~~l~~i~~~~~a~~~~~~~-------~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~ 164 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYAT-------IGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG--FMGSWLDFGSI 164 (490)
T ss_pred HHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCc--HHHHHHHHHHH
Confidence 5555556666666665410 00011224778899999999999999999999999999999 99999888888
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccc
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+|..+++.+...+.. .+..... ...+||+.|++.+++.++ .++....+||+|+.....++.++++++ ...+
T Consensus 165 ~G~~lg~~~~~~~~~-----~~~~~~~--~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~-~~~~ 235 (490)
T PRK10642 165 AGFVLGAGVVVLIST-----IVGEANF--LDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDRE-GLQD 235 (490)
T ss_pred HHHHHHHHHHHHHHH-----hcCHHHh--cCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccc-cccc
Confidence 888887765533110 0000000 012999999987654443 344455678876532111000000000 0000
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHH
Q 012976 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 347 (452)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 347 (452)
.++..+ ++.+++.++.+.......++....++....|.|.|+.+. ++.+. ..+........++..+
T Consensus 236 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~s~----------~~~~~~~~~~~~~~~~ 301 (490)
T PRK10642 236 GPKVSF---KEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN-LHYSE----------DHGVLIIIAIMIGMLF 301 (490)
T ss_pred cccCCH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHH
Confidence 011112 223332113333333333444456667777888887432 22111 1122223335566778
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHH-HHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 348 TSVLMEKLCRKWGAGFIWGISNILMALCFLA-MLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 348 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
+.++.|+++||+|||+.+..+.++..++... +.... .. +....++...+.|++.+........+
T Consensus 302 ~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~~~~~~~~~g~~~~~~~g~~~~~ 366 (490)
T PRK10642 302 VQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN-------------SN--VIGLIFAGLLMLAVILNCFTGVMAST 366 (490)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh-------------CC--CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999887776544333222 22221 00 22333444455566555555556677
Q ss_pred hhhhcccccCcccc
Q 012976 427 VSIRTESLGLGQGG 440 (452)
Q Consensus 427 ~~~~~~~~~~g~g~ 440 (452)
+.+.+|++.|+++.
T Consensus 367 ~~~~~p~~~Rg~~~ 380 (490)
T PRK10642 367 LPAMFPTHIRYSAL 380 (490)
T ss_pred HHHHCCCccchHHH
Confidence 88999999986544
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-24 Score=201.60 Aligned_cols=323 Identities=10% Similarity=0.094 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+.+....+....+.+...++++.++ +++|.++.+.|++.+++.+...+.+++.|+++| |+|||+.++++ .+..
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~k~~~~~~-~~~~ 83 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILAD----KFDKKRYMLLA-ITAF 83 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcchhHHHH-HHHH
Confidence 44555566667778888889999888 679999999999999999999999999999999 99999887764 4445
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
.++.....+.++. +..++.+.+.+.+.+...+...++..|..|+++|+ ++.++.....++|..
T Consensus 84 ~~~~~~~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~lg~~ 146 (395)
T PRK10054 84 ASGFIAIPLVNNV---------------TLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKT--KIFSLNYTMLNIGWT 146 (395)
T ss_pred HHHHHHHHHHhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHH--HHHHHHHHHHHHHHH
Confidence 5555555554442 44445565666666666777889999999999999 999999999999999
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (452)
+++.+++++.. .+|+..|++.+++.++..++..+.+||++++++++ + + +
T Consensus 147 igp~l~~~l~~----------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--------~------~-~ 195 (395)
T PRK10054 147 VGPPLGTLLVM----------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE--------T------G-S 195 (395)
T ss_pred HHHHHHHHHHH----------------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc--------h------h-h
Confidence 99999877321 17888998887766665555555555543221110 0 0 0
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHH--HHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALG--LMLNSVVLGITS 349 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~i~~ 349 (452)
.++.++.+|+ |+++......++.......+..+.+.|... ..+ .+.+....+ .....+......
T Consensus 196 -~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~----------~~~~~~~~g~~~~~~~~~~~~~~ 261 (395)
T PRK10054 196 -VWSPSVLLQD--KALLWFTCSGFLASFVSGAFASCISQYVMV-VAD----------SDFAEKVVAVVLPVNAAMVVSLQ 261 (395)
T ss_pred -hhhhhhhccC--ceehHHHHHHHHHHHHHHHhhhhHHHHHHH-hcc----------cchHHHHHHHHHHhhhhheeeeh
Confidence 1122455677 777777777666665555554555665521 111 111111222 222334444556
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhh
Q 012976 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (452)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (452)
...+++.||.++|+.+..+..+.+++...+.+.. + +.+...+...+.|++.+...+...+++.+
T Consensus 262 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~ 325 (395)
T PRK10054 262 YSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG----N------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDH 325 (395)
T ss_pred hHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc----h------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 7889999999999998888877777776655431 0 34445556677888877777777788999
Q ss_pred hcccccCcc
Q 012976 430 RTESLGLGQ 438 (452)
Q Consensus 430 ~~~~~~~g~ 438 (452)
..|++.+++
T Consensus 326 ~~p~~~~~~ 334 (395)
T PRK10054 326 IAPPGMKAS 334 (395)
T ss_pred hCCccccee
Confidence 999887654
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-23 Score=204.64 Aligned_cols=264 Identities=13% Similarity=0.106 Sum_probs=171.8
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 012976 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (452)
Q Consensus 52 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (452)
...|.+.++ |.++.+.+++.++..++..+++++.|+++| |+|||++++++..+ .+++.....+.+..
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~D----r~g~k~~l~~~~~~-~~i~~~~~~~~~~~------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPAGLIL-AAAVMLFMGFVPWA------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhh----ccCCchhHHHHHHH-HHHHHHHHHhhhcc-------
Confidence 445554566 999999999999999999999999999999 99999987774444 44444444333211
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH-HHHhhccccccceeccccc
Q 012976 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI-LGYATGSFSGWFKILPFTL 210 (452)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~-ig~~~~~~~~~~~~~p~~~ 210 (452)
....+.+++.+.+.|++.+...++....+.|++|+++|+ +++++.+.+..+|.. .+++++......
T Consensus 117 ----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~~~~~l~~~~~~~~------- 183 (452)
T PRK11273 117 ----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGLPPLLFLLGMAWF------- 183 (452)
T ss_pred ----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHh-------
Confidence 112355667778888888888887888899999999999 999999998888864 444432221110
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCC----CCCcccccCccchHHHHHHH-H-HHHHhcch
Q 012976 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSA----PFSEEGHEQSSDVHEAFLWE-L-FGTFRYFS 284 (452)
Q Consensus 211 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~ 284 (452)
.+||+.|++.+++.++..++..+++||++++...+++ .+.+++.+++++++ ...++ . ...+|+
T Consensus 184 --------~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 252 (452)
T PRK11273 184 --------NDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQE-LTAKQIFMQYVLPN-- 252 (452)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCC-ccHHHHHHHHHHcC--
Confidence 2899999998877777667777777876643211100 00000000000000 01112 1 234566
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh--CCc
Q 012976 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW--GAG 362 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~--g~~ 362 (452)
+.+|...+..++.....+....|.|.|+.+. ++.+. ...........++.+++.++.|+++||+ +||
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~-~g~s~----------~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~ 321 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEV-KHFAL----------DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR 321 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 7888888888777777777788899988533 22111 1122233345677778899999999999 444
Q ss_pred h
Q 012976 363 F 363 (452)
Q Consensus 363 ~ 363 (452)
+
T Consensus 322 ~ 322 (452)
T PRK11273 322 G 322 (452)
T ss_pred c
Confidence 4
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.1e-23 Score=195.96 Aligned_cols=277 Identities=15% Similarity=0.051 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 012976 42 GIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~ 121 (452)
....+.....+.+|.+.+++|.++.+.++..+++.++..++.++.|+++| |+|||+.++.+ .+...++..+....
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~g~r~~l~~~-~~~~~i~~~~~~~~ 88 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIAD----RSGRKPVAIPG-AALFIIASLLCSLA 88 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHH----HhCChHHHHHH-HHHHHHHHHHHHHh
Confidence 33456666778889999999999999999999999999999999999999 99999877764 44445555555444
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccc
Q 012976 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (452)
++. +.+++.+.+.|++.+...+...+++.|.+|+++|+ ++.+..+....+|..+++.+++...
T Consensus 89 ~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 89 ETS---------------SLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRA--KVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred CcH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433 45667788888888888888899999999999999 9999999999999999988876522
Q ss_pred cceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHh
Q 012976 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFR 281 (452)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (452)
.. .+|++.|++.+++.++..++..+..||++++++++ +....++.++.++
T Consensus 152 ~~---------------~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 201 (392)
T PRK10473 152 LK---------------FPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA---------------ASSKPRENSESLL 201 (392)
T ss_pred hC---------------cChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC---------------ccchHHHHHHHHh
Confidence 11 28999999888777777766666677764322110 0001123345566
Q ss_pred cchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 012976 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA 361 (452)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~ 361 (452)
+ ++++.......+.......+..+.+.++.+ .++.++ ...........+..+++.++.+++.||+|+
T Consensus 202 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~----------~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~ 268 (392)
T PRK10473 202 N--RFFLSRLVITTLSVTVILTFVNTSPVLLME-QMGFSR----------GEYAIIMALTAGVSMTVSFSTPFALGIFKP 268 (392)
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHhCHHHHHH-HcCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 6 666655554444444444444444554422 222111 111222334577778888999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 012976 362 GFIWGISNILMALCFLAMLILY 383 (452)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~ 383 (452)
|+.+..+..+..++.+.+....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~ 290 (392)
T PRK10473 269 RTLMLTSQVLFLAAGITLALSP 290 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888777777666553
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=198.19 Aligned_cols=342 Identities=14% Similarity=0.068 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+....+..+....+......+++++++++|.++.+.+++.+.+.++..+++++.|+++| |+||||.++.+..+..+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----r~g~k~~l~~~~~~~~~ 90 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAE----IIGPLKTMMIGLLLWCV 90 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHH
Confidence 33444455555566666777889999999999999999999999999999999999999 99999988775544443
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH-H
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN-I 191 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~-~ 191 (452)
........... ....+.+++.+.+.|++.+...+...+.+.|.+|+++|+ +++|+.....++|. .
T Consensus 91 ~~~~~~~~~~~------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~ 156 (402)
T TIGR00897 91 GHAAFIVFGLG------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLS--SAVGWFWAVYSIGIGV 156 (402)
T ss_pred HHHHHHHHhcc------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHH
Confidence 33222111100 011355566787888887777677778889999999999 99999999999996 5
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEA 271 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (452)
+++.+++.+.... +|+..++.......+..++..+..+|++++++++ + +++ .++
T Consensus 157 ~g~~~~~~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~----~~~ 210 (402)
T TIGR00897 157 FGSYYSSYAIPAF---------------GEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----T---REK----FSE 210 (402)
T ss_pred HHHHHHHhccccc---------------chHHHHHHHHHHHHHHHHHHHhccCCCCCccccc----C---Ccc----hhh
Confidence 7887776522111 5444444333222333333444445432211110 0 000 111
Q ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVL 351 (452)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 351 (452)
..++.+..+|+ |+++...+..++.....+....|.|.|+.+ ++.++.. .........++..+++++
T Consensus 211 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g~s~~~----------~~~~~~~~~~~~~ig~~~ 276 (402)
T TIGR00897 211 LGKAATILFTN--PNVLLGGMVRIINTIGLFGFAVFLPMFVAE--LGFSTSE----------WLQIWGTFFFTNIVFNVI 276 (402)
T ss_pred HHHHHHHHHcC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhH----------HHHHHHHHHHHHHHHHHH
Confidence 22334556777 788887777777777777788888888742 3322211 122223456778899999
Q ss_pred HHHHHHhhCCchhHH-HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 352 MEKLCRKWGAGFIWG-ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 352 ~g~l~dr~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
.|+++||++||+.+. .+....+++...+....... . .+.+...+...+.|++.+...+. ...+.+.
T Consensus 277 ~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~----------~--~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~ 343 (402)
T TIGR00897 277 FGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF----------G--HSFAVALIIAIALGIFLAGYVPL-AAVFPTL 343 (402)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc----------C--CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 999999999888653 33333333333332221000 0 03344455566677766655433 3455665
Q ss_pred cccccCcccceeeeeeee
Q 012976 431 TESLGLGQGGHFYGLYVY 448 (452)
Q Consensus 431 ~~~~~~g~g~~~g~~n~~ 448 (452)
. ++++ |.+.|+.|..
T Consensus 344 ~-~~~~--g~~~g~~~~~ 358 (402)
T TIGR00897 344 A-PKHK--GAAMSVLNLS 358 (402)
T ss_pred C-cchh--HHHHHHHHHH
Confidence 4 4454 5666666543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-24 Score=205.59 Aligned_cols=356 Identities=15% Similarity=0.128 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
++.+.++.+.+++..++.+.......++++.|+ +.+|+++.++|.+.++..+..++.+|+.|+++||+++|+||||+++
T Consensus 3 ~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~ 82 (448)
T PRK09848 3 QQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFL 82 (448)
T ss_pred CcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHH
Confidence 356677888888888888888887878888887 5679999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFS 183 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~ 183 (452)
..+.+...+...+....+.. .......+..++...+.+++.+...++..++..|..++ ++|. +..+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~--~~~~~r~ 152 (448)
T PRK09848 83 LFGTAPLMIFSVLVFWVPTD--------WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRA--RLGAARG 152 (448)
T ss_pred HHHHHHHHHHHHHHHhCcCC--------CCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHH--HHHHHHH
Confidence 65555444333333222210 11111233344455667788888888888988888766 4566 6666665
Q ss_pred HHHHH-----HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q 012976 184 LFMAV-----GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS 258 (452)
Q Consensus 184 ~~~~~-----g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 258 (452)
.+.++ +..++|.+++.. .+. ...++.....+.+++..+..++.....||+++++.+
T Consensus 153 ~~~~~~~~~~~~~~~p~i~~~~---------g~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~------ 213 (448)
T PRK09848 153 IAASLTFVCLAFLIGPSIKNSS---------PEE----MVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA------ 213 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhC---------CCc----hhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc------
Confidence 54343 333344333220 000 000121111222233333333344445554321111
Q ss_pred cccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHH
Q 012976 259 EEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL 338 (452)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 338 (452)
+....++.++.+|| |+++...+..++.+.+........+.|+ ++.++.++ ..+.+..
T Consensus 214 ----------~~~~~~~~~~l~~n--~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~----------~~~~~~~ 270 (448)
T PRK09848 214 ----------QPSLKISLQTLKRN--RPLFMLCIGALCVLISTFAVSASSLFYV-RYVLNDTG----------LFTVLVL 270 (448)
T ss_pred ----------CCCHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHhhhheeeE-eeecCChH----------HHHHHHH
Confidence 01123345667888 8888888777777766655554444443 22222111 1111222
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHh
Q 012976 339 MLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (452)
Q Consensus 339 ~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (452)
....+..+++.++.+++.||+|+|+.+.++.++.+++.+.+.+.. +. +.+...+...+.|++.+.
T Consensus 271 ~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~--------------~~-~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 271 VQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS--------------VW-SLPVALVALAIASIGQGV 335 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC--------------ch-hHHHHHHHHHHHHHHHHH
Confidence 222455667889999999999999999999888877776665431 11 344455556678888888
Q ss_pred Hhhccchhhhhhccccc-----Ccccceeeeeeee
Q 012976 419 TYSVPYALVSIRTESLG-----LGQGGHFYGLYVY 448 (452)
Q Consensus 419 ~~~~~~~~~~~~~~~~~-----~g~g~~~g~~n~~ 448 (452)
..+..+++.+|..|.++ |-.|...|+.|+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~ 370 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFT 370 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHH
Confidence 88888999999887653 2346666665543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-23 Score=197.94 Aligned_cols=324 Identities=12% Similarity=0.041 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
+......+.+|.+.+++|.++.+.++..+.+.++..++.++.|+++| |+||||.++... ....++.......++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~~~-~~~~~~~~~~~~~~~~ 101 (406)
T PRK15402 27 IANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSD----RIGRRPVMLAGV-AFFILTCLAILLAQSI 101 (406)
T ss_pred hhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHHH-HHHHHHHHHHHHHccH
Confidence 35566667778888999999999999999999999999999999999 999999877744 4444444444444443
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
+.+++.+.+.|++.+...+...+.+.|.+|+++|. +..+.......+|..+++.+++.....
T Consensus 102 ---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~~l~~~- 163 (406)
T PRK15402 102 ---------------EQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAI--KITALMANVALLAPLLGPLVGAALIHV- 163 (406)
T ss_pred ---------------HHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHc-
Confidence 56667788888888877778889999999999998 888888888888888888887662221
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcch
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (452)
.+|++.|++.+++.++..+..++..||+++++.++ .+.++..++.++.+++
T Consensus 164 --------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-- 214 (406)
T PRK15402 164 --------------LPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK-------------LSLKELGRDYKLVLKN-- 214 (406)
T ss_pred --------------cCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc-------------ccHHHHHHHHHHHHcC--
Confidence 28999998887777666665555666654321110 0012234455667777
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchh
Q 012976 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 364 (452)
|+++...+..++..........+.+.++.+ .++.++. ..........++..++.++.+++.||+++|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~~~----------~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~ 283 (406)
T PRK15402 215 RRFVAGALALGLVSLPLLAWIALSPVILIS-GEQLSSY----------EYGLLQVPVFGALIAGNLTLARLTSRRPLRSL 283 (406)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 777777666655555444444555665532 2222111 11111222345667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeee
Q 012976 365 WGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYG 444 (452)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~ 444 (452)
+..+..+.+++..++....... ..+.+.......+.|++.+...+......... +++++ |...+.
T Consensus 284 ~~~~~~~~~~g~~~~~~~~~~~------------~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~--g~~~~~ 348 (406)
T PRK15402 284 IRMGLWPMVAGLLLAALATVIS------------SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSK--GTVSAA 348 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc------------cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-ccccc--cHHHHH
Confidence 8888887777777665542110 01334445566677777777665554444333 33444 444444
Q ss_pred ee
Q 012976 445 LY 446 (452)
Q Consensus 445 ~n 446 (452)
.|
T Consensus 349 ~~ 350 (406)
T PRK15402 349 MG 350 (406)
T ss_pred HH
Confidence 43
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=199.23 Aligned_cols=335 Identities=13% Similarity=0.111 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
+.+....+...++........+.+.+++|.++.+.+++.+.+.+...+..|+.|+++| |+||||+++.+..+..+.
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laD----r~grr~vl~~~~~~~~~~ 81 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFAD----SFPKGRVMFIANGIKLLG 81 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhh----ccCCchhhHHHHHHHHHH
Confidence 3444555565665555556666678999999999999999999999999999999999 999999888855444333
Q ss_pred HHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHH
Q 012976 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (452)
+. ...+..+ ..+.+.+.|++.+...+...+++.|++|+++|+ +++++.+....+|.++|
T Consensus 82 ~~-~~~~~~~------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~--~a~~~~~~~~~~~~~~G 140 (393)
T PRK11195 82 CL-LMLFGIH------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLV--KANGWMEGSTIAAILLG 140 (393)
T ss_pred HH-HHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHH
Confidence 33 2222211 146677889999999999999999999999999 99999999999999999
Q ss_pred HhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHH
Q 012976 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (452)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (452)
|.+++++... .|+..+.+.+.+.++ ..+..+.+||++.++++++ + +.....++..
T Consensus 141 p~lgG~l~~~----------------~~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~--~------~~~~~~~~~~ 195 (393)
T PRK11195 141 TVLGGALADP----------------HAEAALAVCALIYLL-AALFNLFIPRLGARRPGQS--W------NPIALLRDFF 195 (393)
T ss_pred HHHHHHHHHH----------------HHHHHHHHHHHHHHH-HHHHHhcCCCCcccccccC--C------CHHHHHHHHH
Confidence 9999873210 355555554433332 2334456776543221110 0 0000011222
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 012976 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 353 (452)
++.+..+++ |.++.......+.+..........+.|+ ++.++.++.. ........+++.++++++.+
T Consensus 196 ~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lg~s~~~----------~G~~~~~~~~g~i~g~~~~~ 262 (393)
T PRK11195 196 HACRVLWRD--KLGRFSLAGTTLFWGAGATLRFLVLAWA-PVALGITLNQ----------PAYLQAVVAIGIAVGAGAAA 262 (393)
T ss_pred HHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCChhH----------HHHHHHHHHHHHHHHHHHHH
Confidence 333455666 5555444443344444344444455555 3333332221 12333446777888899999
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
++.||.++++.+..+.. .++....+.+.+ +.+.......+.|++.+...+...+.+.+. ++
T Consensus 263 ~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~ 323 (393)
T PRK11195 263 RLVTLETVLRVLPAGIL-MGLVVLLMALQH-----------------SLLPAYPLLILIGALGGFFVVPMNALLQHR-GH 323 (393)
T ss_pred HHhcCCcccchHHHHHH-HHHHHHHHHHHh-----------------HHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-Cc
Confidence 99999998887777653 333333333332 344455566677888777776667777776 44
Q ss_pred ccCcccceeeeeeeeee
Q 012976 434 LGLGQGGHFYGLYVYKI 450 (452)
Q Consensus 434 ~~~g~g~~~g~~n~~~~ 450 (452)
++.++|.+.++.|+.+.
T Consensus 324 ~~~~~g~~~a~~~~~~~ 340 (393)
T PRK11195 324 VLVGAGHSIAVQNFNEN 340 (393)
T ss_pred ccccchhHHHHHhHHHH
Confidence 44445677777665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=198.17 Aligned_cols=270 Identities=15% Similarity=0.192 Sum_probs=192.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
++.....+.+|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++. +.+...++.....+.++.
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~-~~~~~~i~~~~~~~~~~~ 79 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMAD----SFGRKPVILG-GTLVFALAAVACALAQTI 79 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHh----hcCChHHHHH-HHHHHHHHHHHHHHHccH
Confidence 34566678889999999999999999999999999999999999999 9999987766 444455555555444443
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
+.+.+.+.+.|++.+...+...+++.|++|+++|+ +++++......+|..+++.+++.....
T Consensus 80 ---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~l~~~- 141 (377)
T PRK11102 80 ---------------DQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFS--RMMSFVTLVMTIAPLLAPIIGGWLLVW- 141 (377)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 56677788888888888888999999999999999 999999999999999999887763221
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcch
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFS 284 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (452)
.+|++.|++.+++.++..++..+..||+++++++++ .+.++..++.++.+++
T Consensus 142 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~-- 193 (377)
T PRK11102 142 --------------FSWHAIFWVLALAAILAAALVFFFIPETLPKERRQP------------FHLRTTIRNFASLFRH-- 193 (377)
T ss_pred --------------cChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCC------------CChHHHHHHHHHHHcC--
Confidence 189999988877777766666666777543221110 0011223445566777
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchh
Q 012976 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFI 364 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~ 364 (452)
++++...+..++...+...+..+.+.+..+ .++.++ ...........+..+++.++.+++.||+|+|+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~----------~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 262 (377)
T PRK11102 194 KRVLGYMLASGFSFAGMFSFLTAGPFVYIE-LNGVSP----------QNFGYYFALNIVFLFVMTIINSRFVRRVGALNM 262 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCHHHHHH-HhCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 677766666655555555555555655532 222211 111223334667778889999999999999998
Q ss_pred HHHHHHHHHHHH
Q 012976 365 WGISNILMALCF 376 (452)
Q Consensus 365 ~~~~~~~~~~~~ 376 (452)
+..+..+..+..
T Consensus 263 ~~~~~~~~~~~~ 274 (377)
T PRK11102 263 LRFGLWIQFIMG 274 (377)
T ss_pred HHHHHHHHHHHH
Confidence 888876654443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-23 Score=200.06 Aligned_cols=347 Identities=13% Similarity=0.062 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHH-hhh-----hhhhhhcccccccccccccCCCCCcchhHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIW-LCG-----PVSGLFVQPLVGHFSDRCTSRFGRRRPFIV 105 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~-~~~-----~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~ 105 (452)
......+..+...+.........|.+.++++.++.+.+.+. +.. .+...+++++.|+++| |+||||.++.
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~D----r~Grr~~l~~ 91 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYID----RVGRRKGLIV 91 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhh----hhchHHHHHH
Confidence 34444555666666777777888888899999887765432 222 2223467889999999 9999998888
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHH
Q 012976 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (452)
... ...++..+..++++.+.+ .......+++.+++.|++.+...+...++++|++|+++|+ +++++....
T Consensus 92 ~~~-~~~~~~~l~~~~~~~~~~-------~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~~ 161 (434)
T PRK15075 92 TLS-IMASGTLLIAFVPGYATI-------GLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKG--FYTSWQSAS 161 (434)
T ss_pred HHH-HHHHHHHHHHhCCcHHHH-------HHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccch--HHHHHHHHH
Confidence 544 455555556566553100 0001124578899999999988888889999999999999 999999988
Q ss_pred HHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCc
Q 012976 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (452)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (452)
.++|..+++.+++.+.... .+..... .+||+.|++..... +.........||+++...++ ++ .
T Consensus 162 ~~~g~~~g~~~g~~l~~~~-~~~~~~~------~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~-------~~-~- 224 (434)
T PRK15075 162 QQVAVVFAALLGYLLNQWL-SPAQMAE------WGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK-------HR-P- 224 (434)
T ss_pred HHHHHHHHHHHHHHHHHhC-CHHHHhc------cchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh-------hc-c-
Confidence 8888888877766521100 0100111 28999998754322 11111111222221000000 00 0
Q ss_pred cchHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHH
Q 012976 266 SDVHEAFLWELFGTFRYFSGTIWII-LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVV 344 (452)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 344 (452)
+.++. +++..++ ++.+.. +...++....+.....|.|.|+.+. ++.+. ...........++
T Consensus 225 --~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~g~~~----------~~~~~~~~~~~~~ 286 (434)
T PRK15075 225 --SMREI---FRSLAAN--WRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV-LHLSA----------ADSLLVTLCVGVS 286 (434)
T ss_pred --ccccH---HHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHH
Confidence 00111 1122233 333322 2333334445566777788887432 22211 1112233345677
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH-HHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhcc
Q 012976 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFL-AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (452)
Q Consensus 345 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (452)
..++.++.|+++||+|||+.+..+..+..+... .+.... .+ + ..........+.+++.+...+..
T Consensus 287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~---~~--------~---~~~~~~~~~~~~~~~~g~~~~~~ 352 (434)
T PRK15075 287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV---AA--------P---SFARMLAVELWLSFLYGSYNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH---cC--------C---chHHHHHHHHHHHHHHHHHHhhH
Confidence 788889999999999999987766544332221 111111 00 1 22222233344455666666666
Q ss_pred chhhhhhcccccCcccce
Q 012976 424 YALVSIRTESLGLGQGGH 441 (452)
Q Consensus 424 ~~~~~~~~~~~~~g~g~~ 441 (452)
+.++.|..|++.|+++.+
T Consensus 353 ~~~~~e~~p~~~rg~~~g 370 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFS 370 (434)
T ss_pred HHHHHHHCCCCccchhee
Confidence 678899999998876544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=203.20 Aligned_cols=262 Identities=15% Similarity=0.165 Sum_probs=173.9
Q ss_pred HHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCC
Q 012976 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF 134 (452)
Q Consensus 55 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (452)
.+++++.|.++++.+++.+++.++..++.++.|+++| |+|||+.++.+ .+...++.......++.
T Consensus 50 ~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~~~~~~~~-~~~~~~~~~~~~~~~~~---------- 114 (438)
T TIGR00712 50 MPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSD----RSNPRVFLPAG-LILSAAVMLLMGFVPWA---------- 114 (438)
T ss_pred hHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhh----ccCCceehHHH-HHHHHHHHHHHhccccc----------
Confidence 3455557999999999999999999999999999999 99999877764 44444444444333211
Q ss_pred CchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc-cccceecccccccc
Q 012976 135 RPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF-SGWFKILPFTLTSA 213 (452)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~-~~~~~~~p~~~~~~ 213 (452)
....+.+.+.+.+.+++.+...++....+.|++|+++|+ +++++.+...++|..+++.+.+. ....
T Consensus 115 -~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg--~~~~~~~~~~~~g~~~~~~l~~~~~~~~---------- 181 (438)
T TIGR00712 115 -TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERG--TIVSIWNCAHNIGGGIPPLLVLLGMAWF---------- 181 (438)
T ss_pred -cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccch--hHHHHHHHHHHhHhHHHHHHHHHHHHHh----------
Confidence 112345566777888888888888888999999999999 99999999999999888766543 1111
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCC----CCCCcccccCccchHHHHHHHH--HHHHhcchHHH
Q 012976 214 CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS----APFSEEGHEQSSDVHEAFLWEL--FGTFRYFSGTI 287 (452)
Q Consensus 214 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 287 (452)
.+||+.|++.+++.++..++.++++||++++...++ +++..++..++.+++. ..++. ...+|+ +.+
T Consensus 182 -----~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~ 253 (438)
T TIGR00712 182 -----NDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQEL-TAKEIFMQYVLPN--KLL 253 (438)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhccccccccccccccccc-chHHHHHHHHccC--chH
Confidence 289999999888877776667777787654321111 0000000000000000 01111 234566 778
Q ss_pred HHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCch
Q 012976 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 363 (452)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 363 (452)
+...+..++.....+....|.|.|+.+ ..+.++. ..........+..+++.++.|++.||+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~----------~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~ 318 (438)
T TIGR00712 254 WYIAIANVFVYLLRYGVLDWSPTYLKE-VKHFALD----------KSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN 318 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-ccCCChh----------hHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 888777777776667777888888853 2222221 1123333456778889999999999996543
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=199.46 Aligned_cols=345 Identities=14% Similarity=0.117 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHh--CCCchhhHHHH-----hhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYV-QEL--GIPHAWASIIW-----LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~~~--g~s~~~~g~~~-----~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
..+...+.........+.+. +++ +.++. .+++. ++..++..+++++.|+++| |+|||+.++. +...
T Consensus 30 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~D----r~Grr~~l~~-~~~~ 103 (438)
T PRK09952 30 GAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGD----RLGRKRMLML-TVWM 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH----hhccHHHHHH-HHHH
Confidence 33343344444444555444 454 66665 45543 2344556788888999999 9999998877 5555
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
..++..+..+++++. .......+.+++.|++.|++.+...+....++.|++|+++|+ +..+....+..+|.
T Consensus 104 ~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg--~~~~~~~~g~~~G~ 174 (438)
T PRK09952 104 MGIATALIGLLPSFS-------TIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKA--FYSSGVQVGYGVGL 174 (438)
T ss_pred HHHHHHHHhcCCcHH-------HHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCc--HHHHHHHHHHHHHH
Confidence 666666666666541 001112235778899999999999999999999999999999 88999998889998
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (452)
+++..+...+. +.......+ ..+||..|++.++..++ .+......||+++..+++.+.+ + .++ +.
T Consensus 175 ~l~~~~~~~l~-----~~~~~~~~~--~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~~~~--~-~~~----~~ 239 (438)
T PRK09952 175 LLSTGLVSLIS-----MMTTDEQFL--SWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQHEQA--A-AKK----RI 239 (438)
T ss_pred HHHHHHHHHHH-----HhCCHHHhh--ccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHhhcc--c-ccc----cC
Confidence 88876654311 000000000 12899999887665433 2333334556543211110000 0 000 00
Q ss_pred HHHHHHHHHHhcchHHHHHHH-HHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 012976 271 AFLWELFGTFRYFSGTIWIIL-IVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 349 (452)
+. .....++ ++.+... ...++...+.+....|.+.|+.+. ++.+.. .....+ ...++..+++.
T Consensus 240 ~~---~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~-~g~s~~---------~~~~~~-~~~g~~~~i~~ 303 (438)
T PRK09952 240 PV---IEALLRH--PGAFLKIIALRLCELLTMYIVTAFALNYSTQN-LGLPRE---------LFLNIG-LLVGGLSCLTI 303 (438)
T ss_pred CH---HHHHHHc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHH---------HHHHHH-HHHHHHHHHHH
Confidence 11 1123344 3444433 344444555566667777777432 221110 001112 22455667778
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhh
Q 012976 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (452)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (452)
++.|+++||+|||+.+..+.++..++...+.... ... ...+...+...+.+++.+...+..++++.|
T Consensus 304 ~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 370 (438)
T PRK09952 304 PCFAWLADRFGRRRVYITGALIGTLSAFPFFMAL--EAQ-----------SIFWIVFFSIMLANIAHDMVVCVQQPMFTE 370 (438)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HcC-----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999988877766555443332221 000 023333344455577777777777899999
Q ss_pred hcccccCccccee
Q 012976 430 RTESLGLGQGGHF 442 (452)
Q Consensus 430 ~~~~~~~g~g~~~ 442 (452)
.+|.+.|+.|.++
T Consensus 371 ~~p~~~r~tg~g~ 383 (438)
T PRK09952 371 MFGASYRYSGAGV 383 (438)
T ss_pred HCCcchhHHHHhH
Confidence 9999988655444
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-23 Score=194.73 Aligned_cols=322 Identities=10% Similarity=0.094 Sum_probs=212.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVL 116 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~ 116 (452)
...+....+.+...++++.++ +++|.++.+.|++.++..+...+.+++.|+++| |+|||+.++. +.....++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~d----r~g~k~~l~~-~~~~~~~~~~ 91 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIAD----RFGAKPMIVT-GMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHH----HhCchHHHHH-HHHHHHHHHH
Confidence 444555567777788888876 789999999999999999999999999999999 9999988777 4444555555
Q ss_pred HHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
.....++ .+.+.+.+.+.+++.+...++..+++.|.+|+++|+ +++++.....++|..+|+.+
T Consensus 92 ~~~~~~~---------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~a~~~~~~~~~~g~~ig~~l 154 (400)
T PRK11646 92 TMAIAHE---------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRG--RFFSLLMMQDSAGAVIGALL 154 (400)
T ss_pred HHHHhcc---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 5544433 356667788888888878888899999999999999 99999999999999999999
Q ss_pred ccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHH
Q 012976 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (452)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (452)
++++. . .+|++.|++.+++.++..++..+..||++.++ + +++..++.
T Consensus 155 ~g~l~-~---------------~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~--~---------------~~~~~~~~ 201 (400)
T PRK11646 155 GSWLL-Q---------------YDFRLVCATGAVLFVLAAAFNAWLLPAYKLST--V---------------RTPVREGM 201 (400)
T ss_pred HHHHH-H---------------hhHHHHHHHHHHHHHHHHHHHHHhCCcccccc--c---------------chhhHHHH
Confidence 88732 1 28999999887776665555555555432110 0 00111234
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012976 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLC 356 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 356 (452)
++.+++ ++++...+..+...........+.|.|+.+ ..+ ++. .. ........+.........+++.
T Consensus 202 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~-~~~---------~~-g~l~~~~~~~~~~~~~~~~~~~ 267 (400)
T PRK11646 202 TRVLRD--KRFVTYVLTLTGYYMLAVQVMLMLPIMVND-IAG-SPS---------AV-KWMYAIEACLSLTLLYPIARWS 267 (400)
T ss_pred HHHHcC--chHHHHHHHHHHHHHHHHHHHHhhhhhHHh-hcC-Cch---------HH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 556677 666655544443333333334456666632 211 111 11 1112223333333344445555
Q ss_pred -HhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 357 -RKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 357 -dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
||.+.++.+..+..+.+++..++...+ +.+...+...+.+++.+...+...+++.+..|+++
T Consensus 268 ~~r~~~~~~~~~~~~~~~~~~~~l~~~~-----------------~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~ 330 (400)
T PRK11646 268 EKRFRLEHRLMAGLLIMSLSMFPIGMVS-----------------NLQQLFTLICLFYIGSIIAEPARETLSASLADARA 330 (400)
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc
Confidence 456666666777777777766665553 33444455566777777777777889999999888
Q ss_pred Ccccceeeeeee
Q 012976 436 LGQGGHFYGLYV 447 (452)
Q Consensus 436 ~g~g~~~g~~n~ 447 (452)
+|+ .+|..|.
T Consensus 331 ~g~--~~g~~~~ 340 (400)
T PRK11646 331 RGS--YMGFSRL 340 (400)
T ss_pred chh--hhhHHHH
Confidence 654 4454443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=193.74 Aligned_cols=317 Identities=12% Similarity=0.041 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
+...+..+............+|.+.+++|.|+++.+++.+...++..++.++.|+++| |+||||.++. +.+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~d----r~g~r~~~~~-~~~~~~i 84 (394)
T PRK03699 10 WISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLME----IIPLKRQLIF-GFALMIL 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHH-HHHHHHH
Confidence 3333444444445566677788888999999999999999999999999999999999 9999998776 4444555
Q ss_pred HHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHH
Q 012976 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (452)
+..+..+.++ .+.+++.+.+.+++.+...+...+++.|.+|+++|+ ++.+..+....+|..++
T Consensus 85 ~~~l~~~~~~---------------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 85 AVAGLMFSHS---------------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRG--SRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HHHHHHHcch---------------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHH--HHHHHHHHHHHHHHHHH
Confidence 5555555443 356677888889888888888889999999999999 88888888888888888
Q ss_pred HhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHH
Q 012976 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (452)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (452)
+.+.+.+.. .. .+||+.|.+.+++.++..++.++ ++.|+.++++ ++ +++ + ..
T Consensus 148 ~~~~~~l~~--------~~------~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~-~~--~~~--~---~~---- 199 (394)
T PRK03699 148 PIIAAYLLA--------RS------IEWYWVYACIGLVYVAIFILTLF--SEFPALGKHA-PK--ADK--P---VA---- 199 (394)
T ss_pred HHHHHHHHh--------cc------ccHHHHHHHHHHHHHHHHHHHHh--cCCccccccC-cc--ccC--c---cc----
Confidence 877655211 00 28999999877666555443332 2222111111 00 000 0 00
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 012976 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 353 (452)
+...+ +.++...+..++...+...+..|.|.|+.+ .++.++.+ .........++..+++++.+
T Consensus 200 ----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~~g~s~~~----------~~~~~~~~~~~~~ig~~~~g 262 (394)
T PRK03699 200 ----KEKWG--IGVLFLAIAALLYILAQLTFISWVPEYAQK-KFGMSLED----------AGNLVSNFWMAYMVGMWIFS 262 (394)
T ss_pred ----cccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChHH----------hhHHHHHHHHHHHHHHHHHH
Confidence 00112 556666666666666667778889988843 33332221 12223345667788999999
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
++.||+++|+.+.....+..+...++...+ +.....+...+.|++.+..++...+...+..|+
T Consensus 263 ~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 325 (394)
T PRK03699 263 FIVRFFDLQRILTVLAGLALVLMYLFVNTD-----------------DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV 325 (394)
T ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHcC-----------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 999999999988777666555444443321 233344455667777776666666667776654
Q ss_pred c
Q 012976 434 L 434 (452)
Q Consensus 434 ~ 434 (452)
+
T Consensus 326 ~ 326 (394)
T PRK03699 326 A 326 (394)
T ss_pred C
Confidence 3
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=195.70 Aligned_cols=318 Identities=9% Similarity=-0.024 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH-HHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI-AVA 114 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~-~~~ 114 (452)
+...++.....+....+++|.+++++|.+..++|++.+++.+...++++++|.++| |+|||+.......... ...
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~~~~~~~l~~ 84 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIK----DANHIIIALRLLALASAIFA 84 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHHHHH
Confidence 44455565567788889999999999999999999999999999999999999999 8887543222111111 111
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
.......++ ++.+++.+.+.+.+.+...+...++..|. +++|+ ++.|......++|.++++
T Consensus 85 ~~~~~~~~~---------------~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~--~~~g~~~~~~slG~~~g~ 145 (382)
T TIGR00902 85 AAFSAGAHN---------------AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFG--LDYGKVRLIGSAAFIIGS 145 (382)
T ss_pred HHHHHhhhh---------------HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcC--CCccHHHHHHHHHHHHHH
Confidence 112222222 36666777778877777778888887664 46778 899999999999999999
Q ss_pred hhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHH
Q 012976 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (452)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (452)
.+++.+.... +||..|++...+.. ..++... .+|+++++++++ + ++ ++..+
T Consensus 146 ~l~g~l~~~~---------------g~~~~f~~~~~~~~-~~~~~~~-~~~~~~~~~~~~--~---~~-------~~~~~ 196 (382)
T TIGR00902 146 ALFGGLIGMF---------------DEQNILAILTAGLA-FMLIGFL-IKPTIPPKDAIP--E---DE-------SQGDS 196 (382)
T ss_pred HHHHHHHHHc---------------ChhHHHHHHHHHHH-HHHHHHH-cCCCCCCCcccc--c---cc-------cccch
Confidence 9888733222 89998887654432 2222233 333221111110 0 00 00122
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012976 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 354 (452)
+.++.+|+ |+++.+.+..++...+...+..+.+.|+. + .+.++.. .........+..++..++.++
T Consensus 197 ~~~~~l~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~-~-~g~s~~~----------~g~l~~~~~~~~i~~~~~~~~ 262 (382)
T TIGR00902 197 AFIALLKN--PMNLRFLAAVCLIQGAHAAYYGFSAIYWQ-A-AGISASA----------TGLLWGIGVLAEIIIFAFSNK 262 (382)
T ss_pred hHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-CCCCHhH----------HHHHHHHHHHHHHHHHHHhHH
Confidence 34567788 88998888888888888888888888884 3 3322211 122233456667777889999
Q ss_pred HHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 355 LCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 355 l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
+.||+|+|+.+.++.+...+....+.+.+ +.+..+....+.|+..+...+....++++. |++
T Consensus 263 l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~ 324 (382)
T TIGR00902 263 LFQNCSARDLLLISAIACVGRWAIIGAIE-----------------AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS 324 (382)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHhHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh
Confidence 99999999999999999999988887765 667777888999999999999988999987 777
Q ss_pred cCc
Q 012976 435 GLG 437 (452)
Q Consensus 435 ~~g 437 (452)
+++
T Consensus 325 ~~~ 327 (382)
T TIGR00902 325 EIA 327 (382)
T ss_pred hHH
Confidence 654
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=199.49 Aligned_cols=303 Identities=13% Similarity=0.045 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
......+.+|.+.+++|.|.++.+++.+.+.++..+++++.|+++| |+|||++++. +.....++.....+++++
T Consensus 24 ~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~d----r~G~r~~l~~-~~~l~~~~~~~~~~a~~~- 97 (393)
T PRK09705 24 LLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQ----HVSERRSVAI-SLLLIAVGALMRELYPQS- 97 (393)
T ss_pred hhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHH----HhCchHHHHH-HHHHHHHHHHHHHHCcch-
Confidence 3355668889999999999999999999999999999999999999 9999998887 556666666777676664
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
+.+++.+.+.|++.+...+...+++.|++| ++|+ ++++....+..+|..+++.+++.+....
T Consensus 98 --------------~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~g~~~~~~l~~~~- 159 (393)
T PRK09705 98 --------------ALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTP--LVMGLWSAALMGGGGLGAAITPWLVQHS- 159 (393)
T ss_pred --------------HHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 567788999999999888888899999997 7788 9999999988888888888876522110
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchH
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 285 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (452)
.+||+.+...++..++..+..+...++++++++++ + . +.++.+++ +
T Consensus 160 -------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-------~-----~~~~~l~~--~ 205 (393)
T PRK09705 160 -------------ETWYQTLAWWALPAVVALFAWWWQSAREVASSHKT-------T-------T-----TPVRVVFT--P 205 (393)
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCC-------C-------c-----CCcccccC--H
Confidence 27888877655444333222222222222111000 0 0 01123344 5
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhH
Q 012976 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 365 (452)
+.+.+....++...++.....|.+.|+.+ ++.+... .........++.++++++.+++.||+++|+.+
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s~~~----------ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~ 273 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE--IGASAQY----------SGSLLALMTLGQAAGALLMPAMARHQDRRKLL 273 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCChhh----------hhHHHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 66666666666666777788888888742 3322221 12334456788889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcc-cccC
Q 012976 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE-SLGL 436 (452)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~ 436 (452)
..+..+..++..++.... . +.... ...+.|++.+...+.......+..+ ++++
T Consensus 274 ~~~~~l~~~~~~~~~~~~--------------~--~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~ 327 (393)
T PRK09705 274 MLALVLQLVGFCGFIWLP--------------L--QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIA 327 (393)
T ss_pred HHHHHHHHHHHHHHHHcc--------------c--hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHH
Confidence 888777777666554332 1 11111 2234566666666655556666664 3444
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=204.13 Aligned_cols=360 Identities=14% Similarity=0.100 Sum_probs=205.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--------CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+..+...+......+..+.+.+.+ +.++.+.+++.+++.++..++++++|+++| |+||||++++...+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~d----r~Grr~~~~~~~~l 94 (479)
T PRK10077 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVL 94 (479)
T ss_pred HHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHH
Confidence 333344444444445555555544 888999999999999999999999999999 99999998885544
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
..++.....+.... ..............+++.|++.|++.+...+...++++|++|+++|+ +++++.+.+..+|
T Consensus 95 -~~i~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg--~~~~~~~~~~~~G 168 (479)
T PRK10077 95 -FFISALGSAWPEFG---FTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRG--KLVSFNQFAIIFG 168 (479)
T ss_pred -HHHHHHHHHhhccc---cccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhh--HHHHHHHHHHHHH
Confidence 33343333321100 00000111233456778999999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc---cccCcc
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---GHEQSS 266 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---~~~~~~ 266 (452)
..+++.++...... ......+ ..+||+.|++.++..++.. +..+++||+|+...++.+.++.+ ++....
T Consensus 169 ~~~~~~~~~~~~~~-----~~~~~~~--~~gWr~~f~~~~~~~~~~~-~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~ 240 (479)
T PRK10077 169 QLVVYFVNYFIARS-----GDASWLN--TDGWRYMFASEAIPALLFL-MLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240 (479)
T ss_pred HHHHHHHHHHHhcc-----Ccccccc--cCChHHHHHHHHHHHHHHH-HHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCC
Confidence 99887766542110 0000001 1389999998776665554 44566788764321111110000 000000
Q ss_pred chHHHHHHHHHHHHhcc---hHHHHHHHHHHH---------HHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchh
Q 012976 267 DVHEAFLWELFGTFRYF---SGTIWIILIVTA---------LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG 334 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 334 (452)
...+...++.++..++. .+.++......+ ....++.....|.+.+.. . .+.+. ...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~-~-~g~~~----------~~~ 308 (479)
T PRK10077 241 TLATQALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFK-T-LGAST----------DIA 308 (479)
T ss_pred hhHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHH-H-cCCCC----------chH
Confidence 00111112222222110 011111110000 111112222233344331 1 11111 112
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhH
Q 012976 335 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (452)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (452)
.......++..+++.++.+++.||+|||+++..+.++.+++.+++..... ++. ..........+.+.
T Consensus 309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~------------~~~-~~~~~~~~~~~~~~ 375 (479)
T PRK10077 309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY------------TQA-PGIVALLSMLFYVA 375 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh------------cCc-ccHHHHHHHHHHHH
Confidence 23333456677888899999999999999999999988888877665420 000 11122223334444
Q ss_pred HhHhH-hhccchhhhhhcccccCcccc
Q 012976 415 PLAIT-YSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 415 ~~~~~-~~~~~~~~~~~~~~~~~g~g~ 440 (452)
+.+.. .+..+.+++|.+|++.|+++.
T Consensus 376 ~~~~~~~~~~~~~~~e~~p~~~r~~~~ 402 (479)
T PRK10077 376 AFAMSWGPVCWVLLSEIFPNAIRGKAL 402 (479)
T ss_pred HHhccccchhHHHhHhhCChhHHHHHH
Confidence 44432 356678999999988876544
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-23 Score=186.90 Aligned_cols=329 Identities=14% Similarity=0.158 Sum_probs=235.3
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+.++ +....+...+ .+....+..+.+.+++|+|+.|.+++.+++.+.+.+...+.|.+.| |+|.|+..++...+
T Consensus 14 ~~L~-~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~d----rfGgR~~~~~s~~l 88 (417)
T COG2223 14 RNLW-LSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTD----RFGGRKWTILSMLL 88 (417)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhc----ccCchHHHHHHHHH
Confidence 3344 3333333333 5556666666666999999999999999999999999999999999 99999988774444
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
.++..+...+..+. ..++.+++...+.|++. .........+++++|++++| .++|+.. ..++|
T Consensus 89 -~~IP~~~~~~a~~~------------~~~~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG--~AlGI~g-~GN~G 151 (417)
T COG2223 89 -LLIPCLGLAFAVTY------------PSTWQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQG--LALGIAG-AGNLG 151 (417)
T ss_pred -HHHHHHHHHHHccC------------CchHHHHHHHHHHhccc-ceehcccccccccCChhhhh--HHHHHhc-ccccc
Confidence 44444444443322 22256666666666554 35577788999999999999 9999999 88889
Q ss_pred HHHHHhhccccccceeccccccccccccccc---hhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN---LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
..+...+++.+. ... + |+....+..+..++..+..++..+|.++.+...++
T Consensus 152 ~av~q~~~P~v~---------~~~------g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~----------- 205 (417)
T COG2223 152 VAVAQLVAPLVA---------VAF------GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP----------- 205 (417)
T ss_pred HHHHHHHHHHHH---------HHH------hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc-----------
Confidence 888877766522 111 4 88888888888888788888888887764222100
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
..+ .+++...++ ++.|.+++.++..+-++.++..+++.|+. +.|+.++... ..........+.
T Consensus 206 --~~~--~~~~~v~~~--~~~W~lsllY~~tFG~Fvgfs~~l~~~~~-~~fg~~~~~A----------g~~a~~f~~~g~ 268 (417)
T COG2223 206 --QLP--AQLKAVFSN--KDTWLLSLLYFATFGGFVGFSAYLPMYLV-TQFGLSPVTA----------GLIAFLFPLIGA 268 (417)
T ss_pred --cch--hHHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhH----------HHHHHHHHHHHH
Confidence 111 456667778 89999999999999999999999999984 5566555443 122334566777
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
+.++++|+++||+|.+|++...+..++++............+ ..+.......+..+++..+..+...+.+
T Consensus 269 l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~ 338 (417)
T COG2223 269 LARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----------GGSFVVFVAVFLALFVFAGLGNGSVFKM 338 (417)
T ss_pred HHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc----------CcchHHHHHHHHHHHHHhccCcchheee
Confidence 889999999999999999999998888888777665311110 0134555555666677777777777889
Q ss_pred hhhhcccc
Q 012976 427 VSIRTESL 434 (452)
Q Consensus 427 ~~~~~~~~ 434 (452)
+..++|++
T Consensus 339 Ip~if~~~ 346 (417)
T COG2223 339 IPVIFPKE 346 (417)
T ss_pred chHHHHhh
Confidence 99988775
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=191.61 Aligned_cols=325 Identities=13% Similarity=0.066 Sum_probs=209.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
......+......+.+|.+.+++|.++++.+++.+++.++..++.+++|+++| |+|||+.++.. .....++....
T Consensus 14 ~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~~~~~~~~ 88 (401)
T PRK11043 14 LSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSD----RYGRKPVLLAG-LSLFALGSLGM 88 (401)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHh----hcCCcHHHHHH-HHHHHHHHHHH
Confidence 33334455666667777778999999999999999999999999999999999 99999987764 44444444444
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (452)
.+.++. +.+++.+.+.|++.+...+...+++.|++|+++++ +..+.......+|..+++.+++
T Consensus 89 ~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~i~~ 151 (401)
T PRK11043 89 LWVESA---------------AQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKAN--RVFATIMPLVALSPALAPLLGA 151 (401)
T ss_pred HHhcCH---------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 444443 56677788888887777777788999999998888 8888888888888889988877
Q ss_pred ccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHH
Q 012976 199 FSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFG 278 (452)
Q Consensus 199 ~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (452)
.+... .+|++.|++.+++.++..++..+ .+|++++++++ ++ .++.++
T Consensus 152 ~l~~~---------------~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------~~---~~~~~~ 198 (401)
T PRK11043 152 WLLNH---------------FGWQAIFATLFAITLLLILPTLR-LKPSKKARKQS--------------QD---ALTFKQ 198 (401)
T ss_pred HHHhc---------------CChHHHHHHHHHHHHHHHHHHHH-cCCCCCccccc--------------hH---HHHHHH
Confidence 63221 28999998887776665554443 34332211100 01 124456
Q ss_pred HHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012976 279 TFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK 358 (452)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr 358 (452)
.+|+ ++++...+...+.......+..+.+.++. + ++.++. ..........++..+++++.+++.||
T Consensus 199 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~-~g~s~~----------~~g~~~~~~~~~~~~g~~~~~~l~~r 264 (401)
T PRK11043 199 LLKS--KTYLGNVLIFAACSAAFFAWLTGSPFILE-Q-MGYSPA----------DIGLSYVPQTIAFLVGGYGCRAALQK 264 (401)
T ss_pred HHcC--hhHHHHHHHHHHHHHHHHHHHHHhHHHHH-H-cCCCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666 66665554444444444555556666653 2 222111 11122233456667788899999999
Q ss_pred hCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 359 WGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 359 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
+++|+.........+++...+....... ++ +.+..+....+.|++.+...+...+...+..|+ ++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 329 (401)
T PRK11043 265 WGGEQLLPWLLVLFAVSVIAIWLASLLS----------HP--SLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-AT-- 329 (401)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhc----------cC--cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cC--
Confidence 9998877666555555544333321100 00 233444555677778887777766666666553 33
Q ss_pred cceeeeeee
Q 012976 439 GGHFYGLYV 447 (452)
Q Consensus 439 g~~~g~~n~ 447 (452)
|.+.|+.|.
T Consensus 330 g~~~g~~~~ 338 (401)
T PRK11043 330 GKAAALQNT 338 (401)
T ss_pred hHHHHHHHH
Confidence 555555554
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=190.12 Aligned_cols=335 Identities=14% Similarity=0.050 Sum_probs=211.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+++.++..........+......+.+|.+.+++|.++.+.+++.+++.++..+++++.|+++| |+||||.++.. .
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~D----r~grr~~~~~~-~ 80 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSD----RVGRRPVILVG-M 80 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHH----hcCChHHHHHH-H
Confidence 344444444444455566667777888889999999999999999999999999999999999 99999987774 4
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
....++.......++ ++.+++.+.+.|++.+...+....+..|..++++++ ++++..+.+..+
T Consensus 81 ~~~~~~~~~~~~~~~---------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 143 (394)
T PRK11652 81 SIFILGTLVALFAHS---------------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLR--HANSLLNMGILV 143 (394)
T ss_pred HHHHHHHHHHHHHcc---------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHH
Confidence 444444444444433 356677888888888777777778889999989999 899999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
+..+++.+++.+... .+||+.|++.++..++..++..+..||+++++++
T Consensus 144 ~~~~g~~i~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 192 (394)
T PRK11652 144 SPLLAPLIGGLLTTL---------------FGWRACYLFLLLLGAGVTFSMARWMPETRPADAR---------------- 192 (394)
T ss_pred HHHHHHHHHHHHHhc---------------cChHHHHHHHHHHHHHHHHHHHHhCCccCccccc----------------
Confidence 999998887763221 2899999988776666555555666775432111
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 348 (452)
+++..++.++.+++ ++++......+....+...+..+.+.++.+ .++.++. ..........++..++
T Consensus 193 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~----------~~~~~~~~~~~~~~~g 259 (394)
T PRK11652 193 RTRVLASYRTLLSN--RRFNCYLLMLIGTLAGIAVFEACSGVLMGA-VLGLSSM----------TVSILFILPIPAAFFG 259 (394)
T ss_pred hhHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HcCCCHH----------HHHHHHHHHHHHHHHH
Confidence 11123345566677 666665554444444444444445555532 2222111 1112222345566677
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (452)
+++.+++.||.+++.. .......++.+.+.... .. . ..+.+.......+.|++.+...+...+...
T Consensus 260 ~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~----------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 325 (394)
T PRK11652 260 AWFAGRPNKRFSTLMW--QSVICCLLAGLLMWIPG-WF----------G-VMNVWTLLVPAALFFFGAGMLFPLATSGAM 325 (394)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-Hh----------c-cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888873222 22222222222211111 00 0 002344555667788888888888888888
Q ss_pred hhcccccCcccceeeeee
Q 012976 429 IRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 429 ~~~~~~~~g~g~~~g~~n 446 (452)
+..|+ ++ |...++.+
T Consensus 326 ~~~~~-~~--g~~~~~~~ 340 (394)
T PRK11652 326 EPFPY-LA--GTAGALLG 340 (394)
T ss_pred hhccc-cc--hHHHHHHH
Confidence 87763 33 44444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=195.84 Aligned_cols=324 Identities=13% Similarity=0.042 Sum_probs=212.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
.+...++.......+|.+.++++.++.+.|++.+...++..+++++.|+++| |+||||.++... ....++.....
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~d----r~g~~~~l~~~~-~~~~~~~~~~~ 100 (417)
T PRK10489 26 RFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLAD----RYDRKKLILLAR-GTCGLGFIGLA 100 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhh----hcCCceEEEehH-HHHHHHHHHHH
Confidence 4445556667777888888899999999999999999999999999999999 999999877643 33333332221
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
...- . ....++.+.+.+.+.+++.+...++..+++.|++|+++|+ ++.++.....++|..+|+.+++.
T Consensus 101 ~~~~---------~-~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~~l~g~ 168 (417)
T PRK10489 101 LNAF---------L-PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLM--QAGAITMLTVRLGSVISPALGGL 168 (417)
T ss_pred HHHH---------c-CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHH--HHHHHHHHHHhHHHHhHHHHHHH
Confidence 1000 0 0112355666777788887777788889999999999999 99999999999999999998877
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHH
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 279 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (452)
+... .+|++.|++.++..++..+ ..+.+||++++++++ ++ ..++..+..+..
T Consensus 169 l~~~---------------~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~---------~~---~~~~~~~~~~~~ 220 (417)
T PRK10489 169 LIAA---------------GGVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPR---------EH---PLRSLLAGFRFL 220 (417)
T ss_pred HHHH---------------HhhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCccc---------cc---chHHHHHHHHHH
Confidence 3221 1788888877665554433 344556543221110 00 011222334445
Q ss_pred HhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012976 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 359 (452)
+++ +.++...+..++... ......+.+.|.. +.++.++ ...........++..++.++.+++.||.
T Consensus 221 ~~~--~~~~~~~~~~~~~~~-~~~~~~~~p~~~~-~~~g~~~----------~~~g~~~~~~~~g~~ig~~~~~~l~~~~ 286 (417)
T PRK10489 221 LAS--PVVGGIALLGGLLTM-ASAVRVLYPALAD-EVWQMGA----------AQIGLLYAAVPLGAALGALTSGWLAHSA 286 (417)
T ss_pred HcC--hHHHHHHHHHHHHHH-HHhHHHhhHHHHH-hccCCCh----------hHhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 555 555554444433222 2345556677764 2222221 1112233345677788889999999998
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 360 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
++++.+..+..+.+++++++...+ +.+...+...+.|++.+...+...+++.+..|++.||++
T Consensus 287 ~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~ 349 (417)
T PRK10489 287 RPGLLMLLSTLGSFLAVGLFGLMP-----------------MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRI 349 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHccc-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 777787777777776666554442 444555666777887777777777899999998877553
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.8e-22 Score=188.08 Aligned_cols=319 Identities=12% Similarity=0.082 Sum_probs=188.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+......+...++.....+.++.++ +++|.++++.|++.+...+...+.+++.|.++| |+||||.+++.+.+...
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~d----r~g~r~~~~~~~~~~~~ 93 (393)
T PRK15011 18 TAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSD----KRGDRKSLIVFCCLLGV 93 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccchhHHHHHHHHHHH
Confidence 3444445666777788889999987 789999999999987776655555555555599 99999987665555444
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
+...+..+.+++ +.+++...+.+...+...+...++..|..++++|..+...+..+...++|.++
T Consensus 94 ~~~~~~~~~~~~---------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 158 (393)
T PRK15011 94 LACTLFAWNRNY---------------FVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVI 158 (393)
T ss_pred HHHHHHHHhhHH---------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHH
Confidence 444444444332 33333344444444455666777888877666553113457888888999999
Q ss_pred HHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHH
Q 012976 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (452)
|+.+++.+.... |||..|+..++..++..++.++..||.++++++++ ++. +
T Consensus 159 g~~i~~~l~~~~---------------gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-~-------- 209 (393)
T PRK15011 159 GPPLAYALAMGF---------------SFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT-----GTL-E-------- 209 (393)
T ss_pred hhHHHHHHHHhc---------------ChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-----ccc-c--------
Confidence 999988732221 99999998887777777776777777643322110 000 0
Q ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHH
Q 012976 273 LWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM 352 (452)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~ 352 (452)
+.+ ++ ++..+......++.+.....+..+.+.|+.++ ++.++. ..........+..+++.++.
T Consensus 210 --~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-~~~~~~----------~~g~~~~~~~~~~i~~~~~~ 272 (393)
T PRK15011 210 --APR---RN-RRDTLLLFVICTLMWGTNSLYIINMPLFIINE-LHLPEK----------LAGVMMGTAAGLEIPTMLIA 272 (393)
T ss_pred --ccc---cc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 000 11 12233333333334444444455677666432 222211 11122223345566778999
Q ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcc
Q 012976 353 EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTE 432 (452)
Q Consensus 353 g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 432 (452)
|+++||+|+|+.+..+.....+.+..+...+ +.+..++...+.++..+...+.......|..|
T Consensus 273 G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p 335 (393)
T PRK15011 273 GYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-----------------SPAILLGLQLLNAIYIGILGGIGMLYFQDLMP 335 (393)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999987766655544443333222 23333444444555555554445566788877
Q ss_pred cc
Q 012976 433 SL 434 (452)
Q Consensus 433 ~~ 434 (452)
++
T Consensus 336 ~~ 337 (393)
T PRK15011 336 GQ 337 (393)
T ss_pred CC
Confidence 54
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=192.53 Aligned_cols=337 Identities=12% Similarity=0.106 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
..+.+....+....++....+++|.++ +++|.++.+.|++.+++.+...+++|+.|+++| |+||||.++......
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~D----r~grr~~~~~~~~~~ 78 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISD----KLGLKKHLLWIISGL 78 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHHHHH
Confidence 456666666777778888889999998 568999999999999999999999999999999 999999887643333
Q ss_pred HHHHHHH--HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 111 IAVAVLL--IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 111 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
....... ....+.. .........+.+.+.+++.+...+...++..|..+ +++ ...+......++
T Consensus 79 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~--~~~g~~~~~~~~ 144 (396)
T TIGR00882 79 LVLFAPFFIYVFGPLL----------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSN--FEYGKARMFGCV 144 (396)
T ss_pred HHHHHHHHHHHhhhHH----------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcc--cccchhhhhccc
Confidence 2222211 1111100 00112233445566677777766777667666533 234 456667777788
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
|..+|+.+++.+.. .+|+..|++.+++.++..++.+...||+++++..+ + +.+.+++
T Consensus 145 g~~~g~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~--- 201 (396)
T TIGR00882 145 GWALCASIAGILFS----------------IDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA-N---ALGANAS--- 201 (396)
T ss_pred HHHHHHHHHhhhhc----------------cCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh-c---ccccccC---
Confidence 88888888776321 28899998887777666555554444443221111 0 0000000
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGIT 348 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~ 348 (452)
++..++.++.+|| |+++.+++..++....+.....+.+.|+.+.. ... +.+............+...++
T Consensus 202 -~~~~~~~~~~l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~-~~~-------~~~~~~~g~~~~~~~i~~~~~ 270 (396)
T TIGR00882 202 -AFSLKLALELFRQ--RKFWMFVLYVVGVACVYDVFDQQFANFFTSFF-ATP-------QQGTRVFGYVTTMGELLNALI 270 (396)
T ss_pred -CCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccc-------ccchHHHHHHHHHHHHHHHHH
Confidence 1112355677888 77776666555555444445445666663222 100 001111112223345666777
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (452)
.+..+++.||+|+|+.+.++..+.++...+....+ +.+...+...+.|++..........+..
T Consensus 271 ~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 271 MFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-----------------TALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888887777666554442 3444455556666666555444445556
Q ss_pred hhcccccCc
Q 012976 429 IRTESLGLG 437 (452)
Q Consensus 429 ~~~~~~~~g 437 (452)
+..|++.++
T Consensus 334 ~~~~~~~~a 342 (396)
T TIGR00882 334 SQFDVRLSA 342 (396)
T ss_pred HhCCcceEE
Confidence 655655543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=190.65 Aligned_cols=340 Identities=11% Similarity=0.055 Sum_probs=227.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
++.++...+...+......+.+|.+.+++|.++.+.|++.+...++..+++++.|++.| |+|||+.++.+ .+..+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~----r~G~r~~~~~g-~~l~~ 79 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMK----KLSYKAGILLG-LFLYA 79 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHH-HHHHH
Confidence 45556666666777777788999999999999999999999999999999999999999 99999988774 44444
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
++..+...... ...++.+++.+++.|++.+...+....++.+..|+++|+ +..++.+...++|..+
T Consensus 80 ~g~~l~~~~~~------------~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~~ 145 (410)
T TIGR00885 80 LGAFLFWPAAE------------IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTAT--RRLNLAQSFNPFGSII 145 (410)
T ss_pred HHHHHHHHHHh------------hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHH--HHHHHHHHHHHHHHHH
Confidence 44444322110 122467778889999999999999999999999999999 8999999999999999
Q ss_pred HHhhccccccceeccccc---c--------ccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc
Q 012976 193 GYATGSFSGWFKILPFTL---T--------SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG 261 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~---~--------~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 261 (452)
++.+++.+.....-+... . ...+....+||+.|++.+++.++..++.. +.++++.+++++ +
T Consensus 146 g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~------~- 217 (410)
T TIGR00885 146 GMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA------K- 217 (410)
T ss_pred HHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc------c-
Confidence 998877621100000000 0 00000113699999888776655544332 222211111000 0
Q ss_pred ccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHH
Q 012976 262 HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (452)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (452)
+ .+..++.++.+|+ |+++...+..++..........|.+.|..+...+.+ .+ .+...+...
T Consensus 218 ~-------~~~~~~~~~~~~~--~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~--------~~--~a~~~~~~~ 278 (410)
T TIGR00885 218 Q-------ISFSASLSRLARI--RHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMT--------AG--FAANYNIGA 278 (410)
T ss_pred c-------ccchhhHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--------HH--HHHHHHHHH
Confidence 0 0001123355667 777777777777666666777788887742111100 01 111112223
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhh
Q 012976 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (452)
Q Consensus 342 ~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (452)
.....+++++.+++.||+++|+++.++..+.+++.++..+.+ . ......+.+.|+..+..++
T Consensus 279 ~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~-----------------~-~~~~~~l~~~glf~s~~fp 340 (410)
T TIGR00885 279 MVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG-----------------G-HVGLYCLTLCSAFMSLMFP 340 (410)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-----------------C-hHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999998888777777766666542 2 2245666777888888889
Q ss_pred ccchhhhhhcccccC
Q 012976 422 VPYALVSIRTESLGL 436 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~ 436 (452)
..+++..+..+++..
T Consensus 341 ~i~sl~~~~~g~~~~ 355 (410)
T TIGR00885 341 TIYGIALKGLGQDTK 355 (410)
T ss_pred HHHHHHHhhhhhhhh
Confidence 889999988887653
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=196.48 Aligned_cols=340 Identities=11% Similarity=0.059 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+.+.+....+...+.++...++++.+++ ++|.++.+.|++.++..+...+++|+.|+++| |+||||++++...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~D----r~g~r~~~~~~~~~~ 86 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISD----KLGLKKHLLWIISGL 86 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHHHH
Confidence 4455555666666777788899999985 59999999999999999999999999999999 999999887643332
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
.............. ...........++....+.+.....+....+..+. .++++ ...+......++|.
T Consensus 87 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g--~~~g~~~~~~~~g~ 154 (420)
T PRK09528 87 LVLFGPFFIYVFAP--------LLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSG--FEYGRARMWGSLGW 154 (420)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--Hhhcc--ccchhhHHhhhHHH
Confidence 22211111110000 00000011112222222222222222222332222 23455 67788888888999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (452)
.+++.+++.+.. .+|+..|++.+++.++..++.++..+|+++++..+++ + + +++ ++
T Consensus 155 ~i~~~~~g~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-~~~----~~ 210 (420)
T PRK09528 155 ALCAFIAGILFN----------------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANA--L-G-ANA----SA 210 (420)
T ss_pred HHHHHHHHHHHh----------------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccc--h-h-ccc----cc
Confidence 999888776211 1788888887766666555554444443322111100 0 0 000 11
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHH
Q 012976 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 350 (452)
...++.++.+|+ |+++.+.+..++....+.....+.+.|+.+. ++... .+.........+..+...++.+
T Consensus 211 ~~~~~~~~~l~~--~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~~~g~~~~~~~~~~~~~~~ 280 (420)
T PRK09528 211 VSLKDALALLKL--PKFWFLVLYVIGVACFYDVFDQQFPNFFASF-FATPE-------QGTRVFGYLNSFQVFLEALIMF 280 (420)
T ss_pred ccHHHHHHHccC--CCeEeehHHHHHHHHHHHHHHHHHHHHHHHH-HhccC-------cchHHHHHHHHHHHHHHHHHHH
Confidence 123455667777 6666655544444444444444556665432 21100 0111112223335566678889
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 351 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
+.|++.||+|+|+.+..+..+.+++..+..+.+ +.+...+...+.|++.+........++.+.
T Consensus 281 ~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 343 (420)
T PRK09528 281 FAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-----------------GPLEVSILKLLHAFEVPFLLVGVFKYITLN 343 (420)
T ss_pred HHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888777766553 345555556677777777666667888888
Q ss_pred cccccCcc
Q 012976 431 TESLGLGQ 438 (452)
Q Consensus 431 ~~~~~~g~ 438 (452)
.|++.+++
T Consensus 344 ~~~~~~a~ 351 (420)
T PRK09528 344 FDVRLSAT 351 (420)
T ss_pred cCccceee
Confidence 88887654
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-21 Score=190.80 Aligned_cols=336 Identities=14% Similarity=0.071 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccc-ccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~~~r~Grr~~~i~~~~~ 109 (452)
++.+.+....+............+|.++++.|.+..+++.+..+. .. .+..+++|.++|| +.+|+||||.++..+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~-~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVG-QA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH-HHHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 345556666677777788888899999999999999999873332 22 2688999999996 34555999987776777
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
..+++.....+.+. ...++.+.+.+.+.+++.+...++..++..|++|+++|+ ++.++...+..+|
T Consensus 90 ~~~~~~~~~a~~~~------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg--~~~~i~~~g~~lG 155 (491)
T PRK11010 90 LLLVAIAAMGFLEP------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG--AGAAISVLGYRLA 155 (491)
T ss_pred HHHHHHHHHHHcCC------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH--HHHHHHHHHHHHH
Confidence 66666555544321 122455666677778888888888999999999999999 9999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchH
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 269 (452)
.++++.++.++... . .+||..|++.+++.++..+..+ ..||+++.++++ ++ .+
T Consensus 156 ~llg~~l~~~l~~~--------~------~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~-------~~-----~~ 208 (491)
T PRK11010 156 MLVSGGLALWLADR--------Y------LGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP-------KT-----LE 208 (491)
T ss_pred HHHHHHHHHHHHhc--------c------cCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc-------cc-----hh
Confidence 99998877662210 0 2899999998877665544433 467754321100 00 01
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHH---HHHHHHH
Q 012976 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM---LNSVVLG 346 (452)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~ 346 (452)
++..+++++.+++ +..+......++...+......+.++|+.++ ++ .+....+.. ...++.+
T Consensus 209 ~~~~~~l~~~~~~--~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~-~G------------~s~~~~g~~~~~~g~i~~i 273 (491)
T PRK11010 209 QAVVAPLRDFFGR--NNAWLILLLIVLYKLGDAFAMSLTTTFLIRG-VG------------FDAGEVGLVNKTLGLLATI 273 (491)
T ss_pred hhHHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC------------CCHHHHHHHHHHHHHHHHH
Confidence 1112344555555 4555555444554444444555666665322 22 222222222 2345677
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
++.++.|++.||+|+|+.+.++.++.+++.+.+..... ..+ +.+.......+..+..+...+..+++
T Consensus 274 iG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~~~------------~~~~l~~~~~l~~~~~g~~~~~~~a~ 340 (491)
T PRK11010 274 VGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-TDK------------NLYSMGAAVFFENLCGGMGTAAFVAL 340 (491)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-ccc------------cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999988777666555554433322210 000 22223333333333333344444677
Q ss_pred hhhhcccccCc
Q 012976 427 VSIRTESLGLG 437 (452)
Q Consensus 427 ~~~~~~~~~~g 437 (452)
.++..+++..+
T Consensus 341 ~~~l~~~~~~~ 351 (491)
T PRK11010 341 LMTLCNKSFSA 351 (491)
T ss_pred HHHHcCCCCcH
Confidence 88888877653
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=186.66 Aligned_cols=328 Identities=15% Similarity=0.098 Sum_probs=208.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccccc-CCCCCcchhHHHHHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT-SRFGRRRPFIVCGAISIAVAVL 116 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~-~r~Grr~~~i~~~~~~~~~~~~ 116 (452)
..++.+..........+|.|+++.|.+.+++|++..+... .+..+++|+++||.+ +++||||.++..+.+..+++..
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~ 83 (402)
T PRK11902 6 LLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIA 83 (402)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHH
Confidence 4556667788888899999999999999999999776665 688999999999321 1128988777766666666655
Q ss_pred HHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 117 LIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
...+.+.. ..++.+.+..++.+++.+...++..+++.|++|+++|+ +++++...+..+|.++++.+
T Consensus 84 ~l~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~--~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 84 AMAFCPPH------------AALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG--AGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHhcCcc------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh--HHHHHHHHHHHHHHHHHhHH
Confidence 55544221 12344455555566777778888999999999999999 99999999999999999887
Q ss_pred ccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHH
Q 012976 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWEL 276 (452)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (452)
+..+... . .+||..|++.+++.++..+ ..+..||++..++++ + +.+++..++.
T Consensus 150 ~~~l~~~--------~------~gw~~~f~i~a~~~l~~~l-~~~~~~e~~~~~~~~---~---------~~~~~~~~~~ 202 (402)
T PRK11902 150 ALWLADR--------V------LGWGNTYLLMAGLMLAGAL-TTLWAPEPEVPARPP---R---------SLGEAVVGPL 202 (402)
T ss_pred HHHHHhc--------c------cCHHHHHHHHHHHHHHHHH-HHHhcCCCccccccc---c---------hhHHHHHHHH
Confidence 6652110 0 2899999998876655444 344566654321111 0 0011233456
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHH---HHHHHHHHHHHHH
Q 012976 277 FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML---NSVVLGITSVLME 353 (452)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~i~~~~~g 353 (452)
++.+|| |.++.+++..++..........+.+.++.++ + |.+....+... ..++.+++.++.+
T Consensus 203 ~~l~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~-~------------G~~~~~~g~~~~~~~~~~~i~g~~~~g 267 (402)
T PRK11902 203 RDFFSR--RGAWALLLLIVLYKLGDAFAGSLSTTFLIRG-A------------GFSAGEVGIVNKTLGLAATIVGALAGG 267 (402)
T ss_pred HHHHhC--cCHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-c------------CCCHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 667777 7777766665555443332223334443221 2 22222233332 2234677889999
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHH----HHHhHHhHhHhhccchhhhh
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF----TILGGPLAITYSVPYALVSI 429 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~ 429 (452)
++.||+|+|+.+..+..+..++.+.+...... ++ +.+...... ...|++.+........++++
T Consensus 268 ~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-----------~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 334 (402)
T PRK11902 268 TLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-----------PK--HLWTMALAIGIENLCGGMGTAAFVALLMALCNR 334 (402)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-----------CC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999998777776665554443322100 11 223333332 34556666667777777777
Q ss_pred hcccccC
Q 012976 430 RTESLGL 436 (452)
Q Consensus 430 ~~~~~~~ 436 (452)
..|.++.
T Consensus 335 ~~~~~~~ 341 (402)
T PRK11902 335 SFSATQY 341 (402)
T ss_pred CCcHHHH
Confidence 7776653
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-21 Score=186.74 Aligned_cols=306 Identities=12% Similarity=0.081 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
.+......+.+|.+.+++|.+..+.++..+++.++..+++++.|+++| |+|||+.++.+ .....++......+++
T Consensus 29 ~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~Grr~~l~~~-~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 29 YLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSD----RIGRRPVLITG-ALIFTLACAATLFTTS 103 (413)
T ss_pred HHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHH----HcCchHHHHHH-HHHHHHHHHHHHHcCC
Confidence 345566667777788999999999999999999999999999999999 99999988774 4445455555555544
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (452)
. +.+++.+++.|++.+...+...+++.|.+|+++|+ +++++......+|..+|+.+++.+...
T Consensus 104 ~---------------~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~lg~~l~~~ 166 (413)
T PRK15403 104 M---------------TQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGI--KLMAIITSIVLVAPIIGPLSGAALMHF 166 (413)
T ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 66778899999888766666778899999999999 999999999999999999988763221
Q ss_pred eeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcc
Q 012976 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF 283 (452)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (452)
.+||+.|++.+++.++..+..++..||++++++++ ...+...++.++.+||
T Consensus 167 ---------------~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~-------------~~~~~~~~~~~~ll~~- 217 (413)
T PRK15403 167 ---------------VHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP-------------FSAKSVLRDFRNVFRN- 217 (413)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCC-------------CChHHHHHHHHHHHcC-
Confidence 28999999988777666655566677764321110 0122345567788888
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCch
Q 012976 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF 363 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~ 363 (452)
|+++...+..++.......+..+.|.++.+ .++.++.. ..+.......+..+++.+.+++.+|..+++
T Consensus 218 -~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~-~~g~s~~~----------~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~ 285 (413)
T PRK15403 218 -RLFLTGAATLSLSYIPMMSWVAVSPVILID-AGGMTTSQ----------FAWTQVPVFGAVIVANAIVARFVKDPTEPR 285 (413)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhChHHHHH-hcCCCHHH----------HHHHHHHHHHHHHHHHHHHHHHhccCCchh
Confidence 889988877777776666766677777643 22222111 112222234455566677777665554444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccc
Q 012976 364 IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (452)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (452)
.......+..++..++....... ++ ..+...+...+.+++.+...+...
T Consensus 286 ~~~~~~~~~~ig~~l~~~~~~~~----------~~--~~~~~~~~~~l~~~G~~~~~p~~~ 334 (413)
T PRK15403 286 FIWRAVPIQLVGLALLIVGNLLW----------PH--VWLWSVLGTSLYAFGIGLIFPTLF 334 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc----------cc--cHHHHHHHHHHHHHHHHHHhHHHH
Confidence 43333333333333332221000 11 222234555666777766665544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=200.71 Aligned_cols=339 Identities=14% Similarity=0.149 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHHHHhCCC--------chhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 46 GWALQLSLLTPYVQELGIP--------HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s--------~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
.........+....+++.+ ..+.+++.+++.++..+++++.|+++| |+|||+.++++..+..+ +..+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----~~grr~~~~~~~~~~~~-~~~~ 117 (481)
T TIGR00879 43 DTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSD----RFGRKKSLLIIALLFVI-GAIL 117 (481)
T ss_pred ccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhh----hhhhHHHHHHHHHHHHH-HHHH
Confidence 3344445556566666665 889999999999999999999999999 99999988775554444 3333
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
.....+. ...+.+++.+.+.|++.+...+...+++.|++|+++|+ +++++.+.+..+|..+++.++
T Consensus 118 ~~~~~~~------------~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 118 MGLAAFA------------LSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG--ALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHhccc------------cchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhh--hhhhHHHHHHHHHHHHHHHHH
Confidence 3332221 12356778899999999999899999999999999999 999999999999999999887
Q ss_pred ---cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--------ccccCcc
Q 012976 198 ---SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--------EGHEQSS 266 (452)
Q Consensus 198 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------~~~~~~~ 266 (452)
..... . .+||+.|++.++..+ ..++..+++||++.....+++.++. +.+++..
T Consensus 184 ~~~~~~~~---------~------~~w~~~f~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 184 SGKVSLNN---------T------LGWRIPLGLQLIPAG-LLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHhhcCCC---------C------ccHHHHHHHHHHHHH-HHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcH
Confidence 33111 1 289999998654443 4444556677765321111000000 0000000
Q ss_pred chHH-----------------HHHHHHHHHHhc-chHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccc
Q 012976 267 DVHE-----------------AFLWELFGTFRY-FSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYA 328 (452)
Q Consensus 267 ~~~~-----------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (452)
...+ +..++.++..++ .++.++...+..+...........|.+.+.. + ++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~~------- 318 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE-N-AGVST------- 318 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHH-H-cCCCc-------
Confidence 0000 000111111111 0122222222222222223334444554442 1 22211
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHH
Q 012976 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII 408 (452)
Q Consensus 329 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (452)
...........+..+++.++.+++.||+|||+.+..+..+.+++++.+.+......+.. ... .....+..
T Consensus 319 ---~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~ 388 (481)
T TIGR00879 319 ---DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGS------SKS-SGNVAIVF 388 (481)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCc------ccc-hhHHHHHH
Confidence 11223333456777888999999999999999998888887777776654321000000 000 12222233
Q ss_pred HHHHhHHhHhH-hhccchhhhhhcccccCcc
Q 012976 409 FTILGGPLAIT-YSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 409 ~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~ 438 (452)
..+.+.+.+.. .+....++.|..|++.|++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 419 (481)
T TIGR00879 389 ILLFIAFFAMGWGPVPWVIVSEIFPLSLRPK 419 (481)
T ss_pred HHHHHHHHHccccCeehhhhhccCChHHHHH
Confidence 33333333332 3556677799999887654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=188.04 Aligned_cols=314 Identities=12% Similarity=0.066 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+.++.+....+...+......+++|.+.+++|.|+.+.|++.+.+.++..+++++.|+++| |+||||.+..+ .+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~d----r~g~k~~~~~~-~~~ 80 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIK----RIGFNRSYYLA-SLI 80 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHH-HHH
Confidence 3455566666667778888889999999999999999999999999999999999999999 99999988774 444
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
...+.....+.++. +.+++.+.+.|++.+...+...+.+.|..++++|+ ++++......++|.
T Consensus 81 ~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~ 143 (381)
T PRK03633 81 FAAGCAGLGLMVGF---------------WSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRG--RLLAAYMMVYYLGT 143 (381)
T ss_pred HHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHH
Confidence 55455555555443 67778888999998888787778888889999999 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHE 270 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (452)
.+|+.+++.+.... .+. ..+..+.+......+.. .+.+++++ ++ + + +
T Consensus 144 ~~g~~~~~~l~~~~---------------~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~-~~---~----~------~- 190 (381)
T PRK03633 144 VLGQLLVSKVSTEL---------------MSV-LPWVTGLVLAAILPLLF--TRILNQQA-EN---H----D------S- 190 (381)
T ss_pred HHHHHHHhcccccc---------------cch-HHHHHHHHHHHHHHHHH--hcccCCCC-CC---C----C------C-
Confidence 99999987732210 111 12222211111111111 12111111 00 0 0 0
Q ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHH
Q 012976 271 AFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV 350 (452)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 350 (452)
++.++.+|+ +.++......+...........+.|.|+.+ .+.++ ...........+..+++++
T Consensus 191 ---~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~g~s~----------~~~g~~~~~~~~~~~~~~~ 253 (381)
T PRK03633 191 ---TSIWPMLKL--RQARLGVNGCIISGIVLGSLYGLMPLYLNH--QGMSD----------ASIGFWMALLVSAGILGQW 253 (381)
T ss_pred ---CCHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCH----------HHHHHHHHHHHHHHHHHHh
Confidence 012234555 555544333333333444555667777632 12111 1112223345667788899
Q ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 351 LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 351 ~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
+.+++.||+++|+.+..+..+..++..... . ... ......+.|.+.....+...+.+.|.
T Consensus 254 ~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-----------------~~~-~~~~~~l~g~~~~~~~p~~~~~~~~~ 313 (381)
T PRK03633 254 PIGRLADRFGRLLVLRVQVFVVILGSIAML--S-----------------QAA-MAPALFILGAAGFTLYPVAMAWACEK 313 (381)
T ss_pred hhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-----------------hHH-HHHHHHHHHHHHHhHHHHHHHHHHcc
Confidence 999999999999988888777766554432 1 111 12233445555555667777778888
Q ss_pred cccccC
Q 012976 431 TESLGL 436 (452)
Q Consensus 431 ~~~~~~ 436 (452)
.|++++
T Consensus 314 ~~~~~~ 319 (381)
T PRK03633 314 VEHHEL 319 (381)
T ss_pred CCHHHH
Confidence 877654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-22 Score=193.27 Aligned_cols=326 Identities=11% Similarity=0.054 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 50 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
...+.+.+.+++|.+.++.+++.+.+.+...++.|+.|+++| |+|||+.++.+ .+....+.+...+.++.
T Consensus 38 ~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~d----r~g~r~~l~~~-~~~~~~~~~~~~~~~~~----- 107 (455)
T TIGR00892 38 VTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVN----RFGCRPVVIAG-GLLASLGMILASFSSNV----- 107 (455)
T ss_pred hhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHH----HcCchHHHHhh-HHHHHHHHHHHHHhhhH-----
Confidence 345677888999999999999999999989999999999999 99999977764 44444444555454443
Q ss_pred CCCCCCchhHHHHHH-HHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccc
Q 012976 130 DRGDFRPRAIAVFVF-GFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPF 208 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~ 208 (452)
+.+.+ .+.+.|++.+...++..+++.++++ ++|+ ++.++.+.+..+|..+++.+++.+...
T Consensus 108 ----------~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~--~a~g~~~~~~~~g~~~~~~l~~~l~~~----- 169 (455)
T TIGR00892 108 ----------IELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRP--LANGLAMAGSPVFLSTLAPLNQYLFES----- 169 (455)
T ss_pred ----------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHH--HHHHHHHhcccHHHHHHHHHHHHHHHH-----
Confidence 33333 3466778877666677788889996 7899 999999999999999998887662221
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC--CCC-CCCCCcccccCc-c-chHHHHHHHH--HHHHh
Q 012976 209 TLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS--HDQ-SAPFSEEGHEQS-S-DVHEAFLWEL--FGTFR 281 (452)
Q Consensus 209 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~--~~~-~~~~~~~~~~~~-~-~~~~~~~~~~--~~~~~ 281 (452)
.+||+.|++.+++.++..+..++..++++..+ .++ ++..+.+...++ . ....+..++. .+.++
T Consensus 170 ----------~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (455)
T TIGR00892 170 ----------FGWRGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFT 239 (455)
T ss_pred ----------hChHHHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhc
Confidence 28999999988777655544444433322110 000 000000000000 0 0000111111 24667
Q ss_pred cchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh--
Q 012976 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-- 359 (452)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-- 359 (452)
+ ++++......++...++.....|.+.|.. + ++.+. ..........+++.++++++.+++.||.
T Consensus 240 ~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~-~g~s~----------~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~ 305 (455)
T TIGR00892 240 H--RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-D-KGVDE----------YEAAFLLSIIGFVDIFARPSCGLIAGLKWI 305 (455)
T ss_pred C--chHHHHHHHHHHHHHHccchHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7 78888777777777776677777888773 2 22211 1122333345677778888999999974
Q ss_pred CCchhHHH--HHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCc
Q 012976 360 GAGFIWGI--SNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLG 437 (452)
Q Consensus 360 g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g 437 (452)
++|+...+ +.++.+++.++....+ +.+..++...+.|++.+...+..++++.|.+|+++++
T Consensus 306 ~~~~~~~~~~~~~~~~l~~ll~~~~~-----------------~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g 368 (455)
T TIGR00892 306 RPHVQYLFSFALLFNGLTHLLCALAG-----------------DYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS 368 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc-----------------hHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh
Confidence 33433333 2233333333332222 4455566777888888888888889999999988764
Q ss_pred ccceeeeee
Q 012976 438 QGGHFYGLY 446 (452)
Q Consensus 438 ~g~~~g~~n 446 (452)
.++|+.+
T Consensus 369 --~~~g~~~ 375 (455)
T TIGR00892 369 --SAVGLVT 375 (455)
T ss_pred --hHHhHHH
Confidence 3444443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=195.90 Aligned_cols=368 Identities=12% Similarity=-0.010 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYVQE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+..+...+.........+.+.++ .+.++.+.+++.+...++..++.++.|+++| |+|||+.+++...+ ..
T Consensus 23 ~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d----~~Grr~~~~~~~~~-~~ 97 (502)
T TIGR00887 23 VGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLAD----KLGRKRVYGMELII-MI 97 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhccHHHHHHHHHH-HH
Confidence 33344444444444555544433 2345567789999999999999999999999 99999988774444 44
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
++..+..+.++. ........+++++++.|++.+...+....+++|++|+++|+ ++.++......+|.++
T Consensus 98 v~~~~~~~~~~~---------~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg--~~~~~~~~~~~~g~~~ 166 (502)
T TIGR00887 98 IATVASGLSPGS---------SPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRG--AMMAAVFAMQGFGILA 166 (502)
T ss_pred HHHHHHHHccCc---------ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHH--HHHHHHHHHHHHHHHH
Confidence 344444443321 11122467888999999999999999999999999999999 9999999999999999
Q ss_pred HHhhccccccceecccccccc---------ccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC---CCCCCC----
Q 012976 193 GYATGSFSGWFKILPFTLTSA---------CNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS---HDQSAP---- 256 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~---------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~---~~~~~~---- 256 (452)
++.++....... ........ ......+||+.+.+.++..+ ...+..+++||+|+.. .+++++
T Consensus 167 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~-i~~~~~~~lpESpr~l~~~~~~~~~a~~~ 244 (502)
T TIGR00887 167 GAIVALIVLAGF-KHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPAL-LALYFRLTIPETPRYTADVAKDVEQAASD 244 (502)
T ss_pred HHHHHHHHHHHh-ccccccccccccccccccchhcccHHHHHHHHHHHHH-HHHHHHHhCCCCHHHHHHhCcchHHHHHH
Confidence 988875421100 00000000 00011279999976655443 4445567789987631 111000
Q ss_pred -------C-Cccccc-C----ccchHHHHHHHHHHHHhcchHH---HHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCC
Q 012976 257 -------F-SEEGHE-Q----SSDVHEAFLWELFGTFRYFSGT---IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGE 320 (452)
Q Consensus 257 -------~-~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (452)
+ +++.++ + +++..+..++++++..+. ++. ........+...+.+++...|.|.++.+ .+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~--~G~~ 321 (502)
T TIGR00887 245 MSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFK-WRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSA--IGYS 321 (502)
T ss_pred HHHHhccccccCcccccchhccccchhhhHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHccccccHHHHHH--HcCC
Confidence 0 000000 0 000011123333221111 011 1111222222333344455556666632 2322
Q ss_pred CCcc--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC
Q 012976 321 PNEG--QNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPP 398 (452)
Q Consensus 321 ~~~~--~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (452)
+... ..+..-.........+..++.+++.++.+++.||+|||+++..+..+.++++.++....... +
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----------~- 390 (502)
T TIGR00887 322 PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----------S- 390 (502)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc----------c-
Confidence 2111 00000000000112223445566788999999999999998888887777776665442000 0
Q ss_pred CchHHHHHHHHHHHhHH-hHhHhhccchhhhhhcccccCcccc
Q 012976 399 NGIVIAALIIFTILGGP-LAITYSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 399 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~g~ 440 (452)
... ......+.... .....+..+.+.+|.+|++.|+++.
T Consensus 391 --~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~ 430 (502)
T TIGR00887 391 --THG-FLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAH 430 (502)
T ss_pred --hhH-HHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHH
Confidence 111 11111111111 1123445667789999999876544
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=186.87 Aligned_cols=297 Identities=19% Similarity=0.214 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~ 115 (452)
.....+...+......+..|.+.++.|.++.+.+++.+...+...++.++.|+++| |+||||.++. +.+...++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d----~~g~r~~~~~-~~~~~~~~~ 78 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSD----RFGRRRVLLL-GLLLFALGS 78 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCCchhhHH-HHHHHHHHH
Confidence 34455566677778888899999999999999999999999999999999999999 9999997766 444455555
Q ss_pred HHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHh
Q 012976 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (452)
......++ .+.+.+.+.+.+++.+...+...+++.|++|+++|+ +.++.......+|..+++.
T Consensus 79 ~~~~~~~~---------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~ 141 (352)
T cd06174 79 LLLAFASS---------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERG--RALGLFSAGFGLGALLGPL 141 (352)
T ss_pred HHHHHhcc---------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchh--hhhhHHHHHHHHHHHHHHH
Confidence 55544433 367778888999999999999999999999999999 9999999999999999998
Q ss_pred hccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHH
Q 012976 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (452)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (452)
+++..... .+|++.+++.++..++..+...+. +
T Consensus 142 ~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------------- 174 (352)
T cd06174 142 LGGLLAES---------------LGWRWLFLILAILGLLLALLLLFL-L------------------------------- 174 (352)
T ss_pred HHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHHH-H-------------------------------
Confidence 88763221 268999888877666555444332 1
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012976 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l 355 (452)
|+++......++..........+.+.+..+. ++.++ ...........+...++.++.+++
T Consensus 175 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~i~~~~~~~~ 234 (352)
T cd06174 175 ---------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEV-LGLSA----------AEAGLLLSLFGLGGILGALLGGLL 234 (352)
T ss_pred ---------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345555566666666667777777776432 12111 112233344677788899999999
Q ss_pred HHhhCCch-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 356 CRKWGAGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 356 ~dr~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
.||+|+|+ .+..+..+..++.+.+...+ +.+.......+.|++.+...+...+++.|..|++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 297 (352)
T cd06174 235 SDRLGRRRLLLLIGLLLAALGLLLLALAP-----------------SLALLLVALLLLGFGLGFAFPALLTLASELAPPE 297 (352)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH
Confidence 99999999 99899988888888777664 4566677788889999999999999999999988
Q ss_pred cCcc
Q 012976 435 GLGQ 438 (452)
Q Consensus 435 ~~g~ 438 (452)
+|++
T Consensus 298 ~~~~ 301 (352)
T cd06174 298 ARGT 301 (352)
T ss_pred HHHH
Confidence 8654
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-22 Score=194.18 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+..+.+..+...+........+|.+.+++|.++.+.+++.+...++..++.++.|+++| |+|||+.++.. .+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~-~~~~ 95 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGD----RYGRRLAMVIS-IVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHH
Confidence 334455555555666677777888888999999999999999999999999999999999 99999987764 4444
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
.++.....+.++ ++.+.+.+.+.|++.+...+...+++.|.+|+++|+ ++++.......+|..
T Consensus 96 ~~~~~~~~~~~~---------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~ 158 (496)
T PRK03893 96 SVGTLACGFAPG---------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRN--KASGFLISGFSIGAV 158 (496)
T ss_pred HHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHH
Confidence 445555544444 366778888999998888888999999999999999 999999999999999
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
+++.+++.+... .+||+.|++..+.. +..++.....||++
T Consensus 159 ~~~~~~~~l~~~---------------~~w~~~f~~~~~~~-~~~~~~~~~~p~~~ 198 (496)
T PRK03893 159 VAAQVYSLVVPV---------------WGWRALFFIGILPI-IFALWLRKNLPEAE 198 (496)
T ss_pred HHHHHHHHHhcc---------------CCHHHHHHHHHHHH-HHHHHHHHhCCCch
Confidence 999887763221 28999988654332 33333334445543
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=187.70 Aligned_cols=330 Identities=21% Similarity=0.223 Sum_probs=228.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+..+.......+++..+....++-++.++.-|+...+++..+..+...+.++++|.++| |+.|||.++..-.+..+
T Consensus 12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laD----r~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 12 FRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALAD----RFDRRRILILSQLLRAL 87 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHH
Confidence 33344555666777777777777777788889999999999999999999999999999 99999998886655444
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNIL 192 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~i 192 (452)
+...+..... ......+.+++..++.|++.+...|...++++|++|+++.. .++++.+...++..++
T Consensus 88 ~~~~L~~l~~-----------~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~--~A~al~s~~~niar~i 154 (524)
T PF05977_consen 88 VALLLAVLAF-----------FGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLP--AANALNSISFNIARII 154 (524)
T ss_pred HHHHHHHHHH-----------hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHH--HHHHHHHHHHHHHHhc
Confidence 3333322211 11123466677778889999999999999999999999998 8999999999999999
Q ss_pred HHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHH
Q 012976 193 GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAF 272 (452)
Q Consensus 193 g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (452)
||.++|.+.... |..+.|.+.++..++... .+...++++.+++.+ +++.
T Consensus 155 GPalgG~Lva~~---------------G~~~~f~inalsfl~~i~-~l~~~~~~~~~~~~~---------------~e~~ 203 (524)
T PF05977_consen 155 GPALGGILVAFF---------------GAAAAFLINALSFLISIL-ALLRWKPPPPPSSLP---------------RERF 203 (524)
T ss_pred cchHHHHHHHHH---------------HHHHHHHHHHHHHHHHHH-HHHHccccccccccc---------------hhhh
Confidence 999999833221 667778777665544433 333333222111111 1222
Q ss_pred HHHHHHHHhcc--hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHH--HHHHHHHHH
Q 012976 273 LWELFGTFRYF--SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLM--LNSVVLGIT 348 (452)
Q Consensus 273 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~i~ 348 (452)
.+++++.+|.. .+.+.......++..+....+....|.+.. +.++. ....++++ ..+++++++
T Consensus 204 ~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~-~~l~~------------~a~~yGll~a~~gvGai~G 270 (524)
T PF05977_consen 204 FSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFAR-DVLGG------------GASGYGLLLAAFGVGAILG 270 (524)
T ss_pred hhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHH-HHhCC------------cHHHHHHHHHHHHHHHHHH
Confidence 33333333321 145554444444444333344444555543 33322 22233333 467888899
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (452)
+++.+++.+|+++++++..+.++.+++++.+.+.+ +.+..++.+++.|+++........+.++
T Consensus 271 al~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~-----------------~~~~~~~~l~l~G~~~~~~~~~~~t~~Q 333 (524)
T PF05977_consen 271 ALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP-----------------SFWLALIALFLAGAAWIIANSSLNTLVQ 333 (524)
T ss_pred HHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888888877775 6677778888999999999888889999
Q ss_pred hhcccccCcccc
Q 012976 429 IRTESLGLGQGG 440 (452)
Q Consensus 429 ~~~~~~~~g~g~ 440 (452)
+..|++.+|+..
T Consensus 334 ~~~P~~~~GRv~ 345 (524)
T PF05977_consen 334 LSVPDWVRGRVF 345 (524)
T ss_pred HhCCHHHHhHHH
Confidence 999999987643
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.5e-21 Score=182.20 Aligned_cols=305 Identities=11% Similarity=0.076 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCc----chhHHHHHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR----RPFIVCGAISIAVAV 115 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr----~~~i~~~~~~~~~~~ 115 (452)
+++...+.+...+++|.+++++|.|..+.|++.+++.+...+++|++|.++| |+||| +.+++... +...
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~d----r~g~~~~~~~~~~~~~~---~~~~ 85 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVK----DPSQLIPALRLLALLTL---LFAV 85 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHh----hhcchHHHHHHHHHHHH---HHHH
Confidence 4555567788889999999999999999999999999999999999999999 88884 22222111 1112
Q ss_pred HHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHh
Q 012976 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (452)
......++ ++.+++.+.+.+++.+...+...++..++ .++|+ ++.+......++|..+|+.
T Consensus 86 ~~~~~~~~---------------~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~--~a~~~~~~~~~lg~~igp~ 146 (382)
T PRK11128 86 AFWFGAHS---------------FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIG--LDYGKVRLWGSIAFVIGSA 146 (382)
T ss_pred HHHHhccc---------------HHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhhcc--CCcchHHHHHHHHHHHHHH
Confidence 22222222 36666778878888888888888887776 35577 7888888888999999999
Q ss_pred hccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHH
Q 012976 196 TGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWE 275 (452)
Q Consensus 196 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (452)
+++++.... +||..|+..++..++.. +..+..||++++++++ ++ .++..++
T Consensus 147 lgg~l~~~~---------------g~~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------~~------~~~~~~~ 197 (382)
T PRK11128 147 LTGKLVSWF---------------GEQAILWILTAGVASML-LGQLLRPTIMPQGESR-------QQ------ESAGWPA 197 (382)
T ss_pred HHHHHHHHc---------------ChhHHHHHHHHHHHHHH-HHHHccCCCCCccccc-------cc------cccccch
Confidence 988733322 89999987765444333 3333444432211110 00 0001124
Q ss_pred HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 012976 276 LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKL 355 (452)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l 355 (452)
.++.+|+ |+++.+....++.......+..+.+.|+. + .+.+... . ........+...+..++.+++
T Consensus 198 ~~~i~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~g~s~~~---------~-g~~~~~~~~~~~~~~~~~g~l 263 (382)
T PRK11128 198 WKALLKE--PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-A-AGYSAST---------I-GYLWSLGVVAEVLIFAFSNRL 263 (382)
T ss_pred HHHHHcC--hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-H-CCCCHhH---------H-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567777 88888877777776666667777788773 2 2221111 1 122223455666777899999
Q ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhh
Q 012976 356 CRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIR 430 (452)
Q Consensus 356 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 430 (452)
.||+++|+.+..+.++.+++.+.+...+ +.+..++...+.|++.+...+....++.+.
T Consensus 264 ~~r~~~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 321 (382)
T PRK11128 264 FRRWSARDLLLLSAICGVVRWGLMGSTT-----------------ALPWLIVIQILHCGTFTVCHLAAMRYIAAR 321 (382)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhh-----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999888888888776665554 556666777788888888777766777775
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=186.90 Aligned_cols=348 Identities=14% Similarity=0.047 Sum_probs=219.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
.+.+.+..+.+........-+..-...+-..+.+|+++++.|++.+.+.+..++++|+.|+++| |+.||+++.++.
T Consensus 30 ~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLad----ryNR~~v~~vG~ 105 (493)
T KOG1330|consen 30 SPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLAD----RYNRKRVIAVGI 105 (493)
T ss_pred cchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHh----hcCcceEEeeHH
Confidence 3344444555555555555555555666666789999999999999999999999999999999 999999887744
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.+ ...+.+...++. .+|.+++.|.+.|+|.+...+..+++++|.+|+++|+ +.+++++....
T Consensus 106 ~i-W~~Av~~~~fs~---------------~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs--~~~~ify~~ip 167 (493)
T KOG1330|consen 106 FI-WTLAVFASGFSN---------------HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRS--RVLGIFYFAIP 167 (493)
T ss_pred HH-HHHHHHHHHHHH---------------HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhh--HHHHHhhhhcc
Confidence 44 444455444443 3588999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccc
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+|..+|.+.+....... ..|||.|...+++.+++.++..++.+|+++...++.+.+.+. .+
T Consensus 168 vGsglG~vvgs~va~~~--------------~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~-----~~ 228 (493)
T KOG1330|consen 168 VGSGLGYVVGSVVASLT--------------FWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKM-----VK 228 (493)
T ss_pred cccceeEEeeeeeccCc--------------cceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcC-----CC
Confidence 99999988877632221 259999999999999999999999988876533332222211 12
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHh--HhhCCCCCcccccccccchhhHHHHHHHHHH
Q 012976 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGR--EIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (452)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 345 (452)
.....+++++...|+ +.+..-.+.+....+....+..+.|.+... +.-+.+. ..+.+...+...++
T Consensus 229 ~~ts~~kDl~~l~~~--~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~----------~~~~ifg~vt~~~G 296 (493)
T KOG1330|consen 229 PFTSVWKDLKVLAKI--KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH----------NATLIFGGVTCAGG 296 (493)
T ss_pred CccchHHHHHHHHcc--CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc----------ccchhhhhHHHhhc
Confidence 244567788877776 455444444444333333333344443321 1111111 11112222345566
Q ss_pred HHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHH----HHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhH
Q 012976 346 GITSVLMEKLCRKW----GAGFIWGISNILMALCFL----AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA 417 (452)
Q Consensus 346 ~i~~~~~g~l~dr~----g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 417 (452)
.+|.+++|.++||+ .+........+..+.+.. .+.... .. +. ......+.+++.|....
T Consensus 297 ~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~---~~--------~~--~s~~~~~il~~~g~~~~ 363 (493)
T KOG1330|consen 297 SLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP---AF--------TS--SSMIFGLILFLVGETIS 363 (493)
T ss_pred hhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH---hh--------hh--HHHHHHHHHHHHHHHHH
Confidence 67777777777774 332223232222222221 111111 00 11 22233444455565554
Q ss_pred hHhhc-cchhhhhhcccccCcccce
Q 012976 418 ITYSV-PYALVSIRTESLGLGQGGH 441 (452)
Q Consensus 418 ~~~~~-~~~~~~~~~~~~~~g~g~~ 441 (452)
...+. ..-+..+.+|++.|....+
T Consensus 364 ~~~~a~n~~i~l~vV~p~~Rt~a~a 388 (493)
T KOG1330|consen 364 WFNWATNNPIFLEVVPPSRRTTAYA 388 (493)
T ss_pred hcccccccceeeEecCcccccHHHH
Confidence 44433 3355677888888765443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-23 Score=202.91 Aligned_cols=315 Identities=15% Similarity=0.127 Sum_probs=208.3
Q ss_pred HHHHHHHHhCCC---chhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 53 LLTPYVQELGIP---HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 53 ~~~~~~~~~g~s---~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
+.+.+.++++++ +.+.+++.+++.++..++.++.|+++| |+|||+.++++ .+...++.+...+++++
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~D----r~Grr~~~~~~-~~~~~i~~~~~~~~~~~----- 180 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSD----RFGRKKVLLLS-TLVTAVSGVLTAFSPNY----- 180 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhh----hccchHHHHHH-HHHHHHHHHHHHHcccH-----
Confidence 445566889998 889999999999999999999999999 99999988774 44444455555555443
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccc
Q 012976 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~ 209 (452)
+.+++.+++.|++.+...+...+++.|++|+++|+ ++.++...+..+|.++++.++..+
T Consensus 181 ----------~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~--~~~~~~~~~~~~g~~~~~~~~~~~--------- 239 (505)
T TIGR00898 181 ----------TVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA--IVGTLIQVFFSLGLVLLPLVAYFI--------- 239 (505)
T ss_pred ----------HHHHHHHHHHHhhccchHHHHHHHhheecChhhhH--HHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 67788899999999999999999999999999999 899999999999999888776541
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--------------cccc---Cc-cch--H
Q 012976 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--------------EGHE---QS-SDV--H 269 (452)
Q Consensus 210 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--------------~~~~---~~-~~~--~ 269 (452)
.+||+.+++.++..++..+.. +++||+|+....+.+.++. ..++ .. ++. +
T Consensus 240 ---------~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (505)
T TIGR00898 240 ---------PDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSS 309 (505)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhh
Confidence 169999998877766555444 6788876532111110000 0000 00 000 0
Q ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHH
Q 012976 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITS 349 (452)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~ 349 (452)
+......++.+++ +.++...+...+.++.........+.+. +. + +... .....+.++..+++.
T Consensus 310 ~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------------~~~~-~~~~~~~~~~~i~~~ 372 (505)
T TIGR00898 310 SKKQYSFLDLFRT--PNLRKTTLCLMMLWFTTAFSYYGLVLDL-GN-L------------GGNI-YLDLFISGLVELPAK 372 (505)
T ss_pred ccCCCcHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHHHhccc-cc-c------------CCCh-HHHHHHHHHHHHHHH
Confidence 0001134556666 6666665555444443222211111111 01 0 1111 122233566677888
Q ss_pred HHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhh
Q 012976 350 VLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSI 429 (452)
Q Consensus 350 ~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 429 (452)
++.+++.||+|||+.+.++.++.+++.+++.+.. .. ..+.......+.+++.+..++..+.+.+|
T Consensus 373 ~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 437 (505)
T TIGR00898 373 LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--------------VD-LYFLRTALAVLGKFGITSAFQMVYLYTAE 437 (505)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcC--------------CC-chHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888888877766653 11 12334444455566666677777889999
Q ss_pred hcccccCcccc
Q 012976 430 RTESLGLGQGG 440 (452)
Q Consensus 430 ~~~~~~~g~g~ 440 (452)
.+|++.|+++.
T Consensus 438 ~~p~~~r~~~~ 448 (505)
T TIGR00898 438 LYPTVVRNLGV 448 (505)
T ss_pred cccHHHHhhhH
Confidence 99999876543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=207.27 Aligned_cols=349 Identities=14% Similarity=0.092 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCc--hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLL-TPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
...+.+..+...+........+ +....+++.+. ...+++.+++.++..++++++|+++| |+|||++++++..+
T Consensus 11 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~D----r~grk~~l~~~~~~ 86 (1146)
T PRK08633 11 FLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLAD----KFSKNRVIRIVKLF 86 (1146)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcc----cccHHHHHHHHHHH
Confidence 3333444444444443333333 33345566554 44788889999999999999999999 99999988774433
Q ss_pred HHHHHHHHHh--cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 110 SIAVAVLLIG--LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 110 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
..+...+... ...+ ++.+++.+++.|++.+...++..++++|++|+++|+ +++++...+..
T Consensus 87 ~~~~~~~~~~~~~~~~---------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~ 149 (1146)
T PRK08633 87 EVGLTLLIVLAYYLGW---------------FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLS--RANGLLEAFTI 149 (1146)
T ss_pred HHHHHHHHHHHHHHcc---------------HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccch--hhhhHHHHHHH
Confidence 2322222211 1111 467788899999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccc
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSD 267 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 267 (452)
+|.++|+.+++++.... .....+.. .+|.+.+.+..+...+..++..+.+||.+.......+. +. ..
T Consensus 150 ig~~lg~~l~~~l~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~ 216 (1146)
T PRK08633 150 VAILAGTALFSFLFESV-----NGNTPSEI-LGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDK----KK---YL 216 (1146)
T ss_pred HHHHHHHHHHHHHHHhh-----cccccccc-ccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccc----cc---cc
Confidence 99999999988732210 00000000 13444444443333333444445566655432221100 00 00
Q ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHH
Q 012976 268 VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGI 347 (452)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i 347 (452)
..+...+.++..+++ +.++...+..++.+........+++.|+.+. ++.+.. . ...+......++.++
T Consensus 217 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~--------~-~~g~~~~~~~ig~~~ 284 (1146)
T PRK08633 217 FPKLLWRNLKLLRSD--RVLWLAIIGLSYFWFISQLAQANFPAYAKEV-LGLDNT--------F-QVQYLLAASAIGIGI 284 (1146)
T ss_pred cHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-hCCCcH--------H-HHHHHHHHHHHHHHH
Confidence 122223344555666 6777766666666665556666677776432 222211 0 112333446677788
Q ss_pred HHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhh
Q 012976 348 TSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427 (452)
Q Consensus 348 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 427 (452)
++++.+++.||+++++++.++.++.+++.+++.+.. +.+..++..++.|++.+...+...+++
T Consensus 285 g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (1146)
T PRK08633 285 GSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP-----------------SLASVLVLFFLFGFSAGLFIVPLNALI 347 (1146)
T ss_pred HHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh-----------------hHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999998888888877777776666553 455566777788888888887888999
Q ss_pred hhhcccccCcccceeeeee
Q 012976 428 SIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 428 ~~~~~~~~~g~g~~~g~~n 446 (452)
.+..|++.+|+ ++|+.|
T Consensus 348 ~~~~p~~~rg~--~~~~~~ 364 (1146)
T PRK08633 348 QFRAPEKELGK--VLAANN 364 (1146)
T ss_pred hhcCCccchhh--hhHHHH
Confidence 99999988754 444444
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=182.70 Aligned_cols=333 Identities=15% Similarity=0.118 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHhC--CCchhhHHHHhh-----hhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhc
Q 012976 48 ALQLSLLTPYVQELG--IPHAWASIIWLC-----GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g--~s~~~~g~~~~~-----~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~ 120 (452)
+......+.+.++.. .++++.+.+.+. ..+...+++++.|+++| |+||||+++. +.+...++..+..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~-~~~~~~~~~~~~~~ 84 (394)
T TIGR00883 10 YLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGD----RIGRKKTLVI-TLLMMGIGTLLIGL 84 (394)
T ss_pred HHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhh----hhhhHHHHHH-HHHHHHHHHHHHhh
Confidence 333333344444433 445666655543 23344578899999999 9999998887 44445555555555
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
.++.. .......+.+++.+.+.|++.+...+...+++.|++|+++|+ +..+....+..+|..+++.++...
T Consensus 85 ~~~~~-------~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 85 LPSYA-------TIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRG--FYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred CCChh-------hhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccch--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55431 001112235677888999999888888999999999999999 999999999999999998876542
Q ss_pred ccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHH
Q 012976 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTF 280 (452)
Q Consensus 201 ~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (452)
.. ....... ...+||+.|.+.+++.++. .+.....||+++.+.++++.+ + . .++.++.+
T Consensus 156 ~~-----~~~~~~~--~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~----~---~~~~~~~~ 214 (394)
T TIGR00883 156 SY-----LLGDDAL--LEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEKAQEKHK------K----K---RGPIRETL 214 (394)
T ss_pred HH-----hcCHHHh--hccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHHHHhccc------c----c---cCCHHHHH
Confidence 11 0000000 1138999988776554443 333344555443221110000 0 0 11223344
Q ss_pred hcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012976 281 RYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG 360 (452)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g 360 (452)
++.++.++......++..........+.+.|+.++ ++.++ ...........+...++.++.+++.||+|
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~----------~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 215 TKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQT-LGLSA----------NSALLVLMLSLILFFITIPLSGALSDRIG 283 (394)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45333466666666666666666677778777422 22111 11122233456677888899999999999
Q ss_pred CchhHHHHHHHHHHHH-HHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 361 AGFIWGISNILMALCF-LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
||+.+..+..+..+.. ....... + ..+.+.......+.|++.+...+...+++.|.+|+++|+++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~ 349 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMALL-------------D-SGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTG 349 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-------------c-CCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeE
Confidence 9997765544443322 2222121 0 00334445556677777777888888999999999887554
Q ss_pred c
Q 012976 440 G 440 (452)
Q Consensus 440 ~ 440 (452)
.
T Consensus 350 ~ 350 (394)
T TIGR00883 350 A 350 (394)
T ss_pred e
Confidence 3
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=196.68 Aligned_cols=256 Identities=11% Similarity=0.014 Sum_probs=178.2
Q ss_pred HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhH
Q 012976 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (452)
Q Consensus 60 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (452)
+++.++.+.|++.+.+.++..+++++.|+++| |+|||+.+..+..+..+. ..+..+... ...
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~l~~~~~~~~~~-~~~~~~~~~-------------~~~ 131 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAG----KYVFKWSIGIGMFLSSVI-SIVIPWAAG-------------GGI 131 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHH----HhCcchhhHHHHHHHHHH-HHHHHHHHH-------------cCc
Confidence 68899999999999999999999999999999 999999887754443333 333222111 112
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccccccc
Q 012976 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (452)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~ 219 (452)
+.+++.+++.|++.+...+....+++|++|+++|+ +++++...+..+|..+++.+++.+.+.. .
T Consensus 132 ~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~l~~~l~~~~--------------~ 195 (465)
T TIGR00894 132 ALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERS--RLLGMSTSGFQLGTFIFLPISGWLCESW--------------G 195 (465)
T ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc--------------C
Confidence 56778899999999999999999999999999999 9999999999999999998887632210 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc--cccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 012976 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE--GHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 297 (452)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
+||+.|++.+++.++..++.+...+|+|++.+++.+.+.+. +..++++.+++.....++.+++ +.++...+..++.
T Consensus 196 gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 273 (465)
T TIGR00894 196 GWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKS--LPVWAIWFAIFGH 273 (465)
T ss_pred CCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcC--HHHHHHHHHHHHH
Confidence 89999999888777776666666776654332211111000 0000000000001124566777 8889888888888
Q ss_pred HHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc
Q 012976 298 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG 362 (452)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~ 362 (452)
......+..|.|.|+.+ .++.+.. ...+......++..++.++.|+++||+++|
T Consensus 274 ~~~~~~~~~~lp~~l~~-~~g~s~~----------~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~ 327 (465)
T TIGR00894 274 FWLYTILPTYLPTFISW-VLRVSGK----------ENGLLSSLPYLFAWLCSIFAGYLADFLKSS 327 (465)
T ss_pred HHHHHHHHHHHHHHHHH-HhCcChH----------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888899999854 3332221 112233345677788899999999998644
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-21 Score=180.18 Aligned_cols=299 Identities=13% Similarity=0.122 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
....+.+|.+.+++|.++++.+++.+.+.++..++.++.|+++| |+||||.++++..+ ...+.... ..++
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~~~-~~~~~~~~-~~~~---- 86 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLAR----RFGEERSVAAGLLL-IAAGILIR-SAPG---- 86 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhCchHHHHHHHHH-HHHHHHHH-Hhcc----
Confidence 44567888999999999999999999999999999999999999 99999988774433 33333333 3222
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecc
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p 207 (452)
.+.+++.+++.+++.+...+....++.|.+| ++|+ ++++..+....+|..+++.+++.+...
T Consensus 87 -----------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~g~~i~~~~~~~l~~~---- 148 (355)
T TIGR00896 87 -----------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVG--LMTGLYSMALMGGAALAAAATVPLAQH---- 148 (355)
T ss_pred -----------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhh--HHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 2556677888888888777777788889886 5788 999999999999999988876652111
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHH
Q 012976 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTI 287 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (452)
...+||+.|...+++.++... ...||.+++++++++ . . + .+.++.+|+ +.+
T Consensus 149 ---------~~~~w~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~------~-~----~----~~~~~~~~~--~~~ 199 (355)
T TIGR00896 149 ---------SGGHWQQALAWWALPALLALL---AWIPQVRRRVAANQT------T-T----R----LTPVRIWRS--PLA 199 (355)
T ss_pred ---------hhhhHHHHHHHHHHHHHHHHH---HHhhhhccccCCCCC------C-C----C----CCCchhhcC--HhH
Confidence 001488888776554433222 223443322111100 0 0 0 012334566 677
Q ss_pred HHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhC-CchhHH
Q 012976 288 WIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG-AGFIWG 366 (452)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g-~~~~~~ 366 (452)
+...+..++....+.....|.+.|+. + .+.+. ...........++.++++++.|++.||++ +|+.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~lp~~~~-~-~g~~~----------~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~ 267 (355)
T TIGR00896 200 WQVTVFFGLQSGLYYSLIGWLPAILI-S-HGASA----------ATAGSLLALMQLAQAASALLIPALARRVKDQRGIVA 267 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-H-cCCCH----------HHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHH
Confidence 76666666666666777778888874 2 23221 11223334467788899999999999994 566667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
.+..+.+++.+.+.+.. +.... ....+.|++.+...+...+.+.+..++
T Consensus 268 ~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~ 316 (355)
T TIGR00896 268 VLAVLQLVGLCGLLFAP-----------------MHGLW-AWALVLGLGQGGAFPLALTLIGLRSRQ 316 (355)
T ss_pred HHHHHHHHHHHHHHHhh-----------------hhHHH-HHHHHHHHhhhhHhHHHHHHHHHhccC
Confidence 77777777766665542 11111 234567888888777766666655444
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=182.93 Aligned_cols=362 Identities=11% Similarity=0.052 Sum_probs=221.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchhHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVC 106 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~i~~ 106 (452)
.++.++......+...++++....+++.|+ +++|.++.+.+++.+.+.....+..+++|+++| | +||||.++++
T Consensus 12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laD----r~~G~r~~~~~g 87 (489)
T PRK10207 12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGD----HLLGTKRTIVLG 87 (489)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhh----hccchHHHHHHH
Confidence 345566667777778889999999999998 779999999999999999888888999999999 9 9999999885
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc--cchhhhhhHHHH
Q 012976 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH--RRTRVANAYFSL 184 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~ 184 (452)
..+..+ +.....+..+. ...+.+++.+.++|.+...+...+++.|.+|+++ |+ ++.++...
T Consensus 88 ~~~~~~-g~~~~~~~~~~--------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~--~~~~~~~~ 150 (489)
T PRK10207 88 AIVLAI-GYFMTGMSLLK--------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLD--GAFTLFYM 150 (489)
T ss_pred HHHHHH-HHHHHHHhccc--------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhh--cchhHHHH
Confidence 555444 44444443321 1234467778889999999999999999998875 35 68999999
Q ss_pred HHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC
Q 012976 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ 264 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 264 (452)
..++|..+|+.+++++.... ||++.|++.++.. +..++.+...++..++..++.++...+....
T Consensus 151 ~~nig~~~g~~l~g~l~~~~---------------gw~~~F~i~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 214 (489)
T PRK10207 151 SINIGSLISLSLAPVIADKF---------------GYSVTYNLCGAGL-IIALLVYFACRGMVKDIGSEPDHKPMSFSKL 214 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhh---------------ChHHHHHHHHHHH-HHHHHHHHHcchhhcccCCCCCccchhhhhH
Confidence 99999999999988733221 8999998865433 3333333333432211110100000000000
Q ss_pred ------------------ccchHHHH-------------HHHH---HHHHhcchHHHHHHH--HHHHHHHHhhHhHHHhh
Q 012976 265 ------------------SSDVHEAF-------------LWEL---FGTFRYFSGTIWIIL--IVTALTWLGWFPFLLFD 308 (452)
Q Consensus 265 ------------------~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 308 (452)
........ ..+. .+.+|+ |.+.... +...+.+..+.......
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~~~~~r~--r~~~~~~l~~~~~~f~~~~~q~~~~l 292 (489)
T PRK10207 215 LLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKLDKTGRN--KMFVAFVLMLEAVVFYILYAQMPTSL 292 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 00000000 0000 012233 3333222 11333444444443445
Q ss_pred HHHHHhHhhCCCCCcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHhhCCchh-------HHHHHHHHHHHHHHHH
Q 012976 309 TDWMGREIYGGEPNEGQNYATGVRMG-ALGLMLNSVVLGITSVLMEKLCRKWGAGFI-------WGISNILMALCFLAML 380 (452)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~-------~~~~~~~~~~~~~~~~ 380 (452)
+.+..+...+ . ..|.... .....++.+..++.+++.+++.||.++|+. +.+|+++.+++++.+.
T Consensus 293 ~l~~~~~~~~---~-----~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~ 364 (489)
T PRK10207 293 NFFAINNVHH---E-----ILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAA 364 (489)
T ss_pred HHHHHHhccc---c-----ccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5554322211 0 0122211 111223445566777888999999998873 6778888777776553
Q ss_pred HHHH-hhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeee
Q 012976 381 ILYY-VAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYV 447 (452)
Q Consensus 381 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~ 447 (452)
.... .... ....+.+.......+.|++.+...+...+++.+..|++.+ |..+|+.++
T Consensus 365 ~~~~~~~~~--------~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~--g~~~g~~~l 422 (489)
T PRK10207 365 AAGMWFADA--------QGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLM--GFILGMWFL 422 (489)
T ss_pred HHHHhhcCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHH--HHHHHHHHH
Confidence 3221 1111 0011345566778889999999999999999999999885 555555543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.5e-21 Score=206.30 Aligned_cols=321 Identities=16% Similarity=0.083 Sum_probs=206.5
Q ss_pred hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHH--HHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHH
Q 012976 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV--CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFV 143 (452)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (452)
...++..+++.+...+.+|++|+++| |+|||+++.. ...+............++ ++.++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laD----r~~rk~~~~~~~~~~~~~~~~~~~~~~~~s---------------~~~l~ 112 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLAD----KYDKAKLAKILKFAEIGIAALAIYGFHLNS---------------VPLLF 112 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------HHHHH
Confidence 45788888899999999999999999 9999987533 121111111111111122 47788
Q ss_pred HHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhH
Q 012976 144 FGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKS 223 (452)
Q Consensus 144 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 223 (452)
+.++++|++.+...+...+++.|++++++|+ +++|+.+.+.++|.++|+.+++++... .+|++
T Consensus 113 ~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~--~a~~~~~~~~~ig~~igp~l~g~l~~~---------------~~~~~ 175 (1140)
T PRK06814 113 AALFLMGIHSALFGPIKYSILPDHLNKDELL--GANALVEAGTFIAILLGTIIGGLATIS---------------GNFVI 175 (1140)
T ss_pred HHHHHHHHHHHhhchHHHHhhHhhcCccccc--hhhHHHHHHHHHHHHHHHHHHHHHHhc---------------cccHH
Confidence 8999999999999999999999999999999 999999999999999999999984322 28888
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHh
Q 012976 224 AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFP 303 (452)
Q Consensus 224 ~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (452)
.|... ++..+..++..+.+++++..+..... +. ...+.....++...++ +.++...+..++.++....
T Consensus 176 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 243 (1140)
T PRK06814 176 LVALL-MGIAVLGWLASLFIPKTGNAAPDLKI------DR---NIIRSTITLLKYAKAD--KRIWLAILGISWFWLVGAV 243 (1140)
T ss_pred HHHHH-HHHHHHHHHHHhhCCCCCCCCCCCee------cc---chHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHH
Confidence 88443 33334444455556655432211100 00 0011223345556666 7888888877777777777
Q ss_pred HHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 012976 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 383 (452)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (452)
+..+.+.|+. +.++.++ ....+......++.++++++.+++.||.++++.+..+.++.+++.+.+.+..
T Consensus 244 ~~~~~p~~~~-~~~g~~~----------~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (1140)
T PRK06814 244 VLSQLPLLAK-ETLGGDE----------NVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFAS 312 (1140)
T ss_pred HHHHhHHHHH-HHcCCch----------HHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcc
Confidence 7778888884 3333222 1122334456778889999999999888777766666555555444333320
Q ss_pred H--hhhccc--cCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeeee
Q 012976 384 Y--VAIHMD--YRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYVY 448 (452)
Q Consensus 384 ~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~~ 448 (452)
. ...... ....... ..+.+..++..+++|++.+...+...+++.+.+|++.+ |.++|+.|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~--G~v~g~~~~~ 378 (1140)
T PRK06814 313 SSVPAEPAQLKSILVFLS-KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHR--ARVIAANNVL 378 (1140)
T ss_pred cccccccccccchhhhhc-ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccc--eeeeHHHHHH
Confidence 0 000000 0000000 01345556667778888888888888999999999986 4566665544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=178.09 Aligned_cols=329 Identities=12% Similarity=0.077 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
++...+.....+....++++.++ +++|++..+.|++.++..++..++++++|+++| |+||||..+..+.+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~d----r~g~~r~~~~~~~~~~~~~ 82 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIAD----KWLSAQKVYAVCHFAGALL 82 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcccHHHHHHHHHHHHHH
Confidence 44555666667788888888888 668999999999999999999999999999999 9876554444344444444
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHh----h----hccCccccchhhhhhHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALL----A----DLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~----~~~~~~~r~~~~~~~~~~~~~ 186 (452)
.....+.++. +.+.+.+.+.+++.+...+...++. . |...+..|. +..|
T Consensus 83 ~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~--r~~G------ 139 (418)
T TIGR00889 83 LFFAAQVTTP---------------AGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPI--RVMG------ 139 (418)
T ss_pred HHHHHHhcCH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCe--eeeh------
Confidence 4444444332 3344455555555554444444332 2 323333444 4444
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
.+|..+++.+++..... ..|. .|++.+++.++..+ ..+.+||+++.+++++ . +
T Consensus 140 ~lG~~ig~~l~g~l~~~---------------~~~~-~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~--~------~-- 192 (418)
T TIGR00889 140 TIGFIAAMWAVSLLDIE---------------LSNI-QLYITAGSSALLGV-FALTLPDIPVAKSTAK--M------S-- 192 (418)
T ss_pred hHHHHHHHHHHHHhccc---------------chhH-HHHHHHHHHHHHHH-HHhcCCCCCCCccccc--c------C--
Confidence 35666666666542100 1233 35555555444443 3456677543211110 0 0
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
.++....+.++.+|+ |+++.+.+..++..........|.+.|+.+ .+.++....++ +.........+..+..+
T Consensus 193 -~~~~~~~~~~~~~k~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~--~~~~~g~~~~~~~i~~i 265 (418)
T TIGR00889 193 -IKVMLGLDAFILFKN--KRMAIFFFFSMLLGAPLQITNIFGNGFLHE--FGRNPEFADSF--VVKNASIWMSLSQFSEI 265 (418)
T ss_pred -HHHHhhhhHHHHhcC--CCeeeHHHHHHHHHhHHHHHHHhHHHHHHH--hcccccccchh--hhhhHHHHHHHHHHHHH
Confidence 011111123456677 677777777766655555555666766632 22221110000 11222333344566777
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
++.++.|++.||+|+|+++..+.++.++++.++.... +.....+..++...+.|++.+...+....+
T Consensus 266 ~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~-------------~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~ 332 (418)
T TIGR00889 266 FFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGD-------------PEYFGYALLFLSMIVYGCAFDFFNISGSVF 332 (418)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC-------------cchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999988887766655432 110123445556777888888877777788
Q ss_pred hhhhcccccCcc
Q 012976 427 VSIRTESLGLGQ 438 (452)
Q Consensus 427 ~~~~~~~~~~g~ 438 (452)
+.|..|+++|++
T Consensus 333 i~~~~p~~~~g~ 344 (418)
T TIGR00889 333 VEKEVPVHIRAS 344 (418)
T ss_pred HHHHCCHHHHHH
Confidence 999999988754
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-19 Score=172.35 Aligned_cols=328 Identities=15% Similarity=0.025 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHH--Hhhhhhhhhhccccc-ccccccccCCCCCcchhHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASII--WLCGPVSGLFVQPLV-GHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~--~~~~~~~~~i~~~~~-G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
...+...++.+.+.+....+++|.++++.|.+.+++|++ ...+.+...+.+|++ ++.+| |+||||.+++...+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~----~~g~r~~~i~~~~~ 78 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSW----RLGRRRSWVLPMQC 78 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc----cCCcchhHHHHHHH
Confidence 445666778888888999999999999999999999997 356678888888888 44788 99999998765544
Q ss_pred HHHHHHHHHh-cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 110 SIAVAVLLIG-LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 110 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
....+..... +... ... .........+.++..+...+...++..|..++++++ ...+....+..+
T Consensus 79 ~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~--~~~~~~~~g~~l 144 (390)
T TIGR02718 79 LVSACLASLALVGPD-----------VAG-AGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA--KGNAVQIAGVMI 144 (390)
T ss_pred HHHHHHHHHHcCCcc-----------hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh--HHHHHHHHHHHH
Confidence 3332222222 1111 011 122223344455666677777888888988888888 777888887788
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccch
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDV 268 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 268 (452)
|..+|+...+++... .+||..|++.+++.++..+..++..||++++ +++
T Consensus 145 G~~~g~~~~~~l~~~---------------~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~~--------------- 193 (390)
T TIGR02718 145 GFFGGGAGTLVLFGK---------------FGQRPAFLLVACVPLASLVCVLWLKDRAVAS-PEA--------------- 193 (390)
T ss_pred HHHHHHHHHHHHHHH---------------hCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-ccc---------------
Confidence 888887665542221 1899999999877766655554443332211 100
Q ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHH--HH-HHH
Q 012976 269 HEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLML--NS-VVL 345 (452)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~-~~~ 345 (452)
+++..++.++.+|+ |.++......++...+......+.+.|+.+ . + .+....+... .. ...
T Consensus 194 ~~~~~~~~~~~l~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~-G------------~s~~~ig~~~~~~~~~~~ 257 (390)
T TIGR02718 194 PLARRASLFRFFRR--PLAWSLLALALLSAMTAVSGFGLSKLYLVD-A-G------------WPLEWIGRLGMAGGAVTV 257 (390)
T ss_pred chhhHHHHHHHHcC--cCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-c-C------------CCHHHHHHHHhHHHHHHH
Confidence 00112345667777 667777766667666666666677777742 2 2 2222233332 22 344
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccch
Q 012976 346 GITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYA 425 (452)
Q Consensus 346 ~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 425 (452)
.++.++.|++.||+|+|+.+..+..+.++............. .. .....+....+.++..+...+..++
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~g~~~~~~~~ 326 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL---------AP--GIAVAWSCSAFGSLITGITSVAIYT 326 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc---------CC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999999999999888777665333322222110000 00 2222333334445556666666667
Q ss_pred hhhhhccc-ccC
Q 012976 426 LVSIRTES-LGL 436 (452)
Q Consensus 426 ~~~~~~~~-~~~ 436 (452)
.+.+..++ +.+
T Consensus 327 ~~~~~~~~~~~~ 338 (390)
T TIGR02718 327 AFMRFAGDGDQA 338 (390)
T ss_pred HHHHHhCcccch
Confidence 77777665 443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=175.13 Aligned_cols=359 Identities=13% Similarity=0.120 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchhHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVC 106 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~i~~ 106 (452)
+.++.+....+...++++...+++|.|+++ +|.++.+.+++.+.+.+...++.+++|+++| | +||||.++++
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laD----r~~G~~~~l~~~ 85 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGD----RVWGTKKTMVLG 85 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHH----hhcchHHHHHHH
Confidence 345566666777788889999999999854 8999999999999999999999999999999 8 8999988874
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc---cchhhhhhHHH
Q 012976 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH---RRTRVANAYFS 183 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~ 183 (452)
.+...++..+..+.++. +.+.+++.+.+++.+...+...++++|++|+++ |+ .+.++..
T Consensus 86 -~~~~~~g~~~~~~~~~~---------------~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~--~~~~~~~ 147 (475)
T TIGR00924 86 -GIVLMLGHFMLAMSIYP---------------DLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRD--GGFTLFY 147 (475)
T ss_pred -HHHHHHHHHHHHhcccH---------------hHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccccc--ceehhHH
Confidence 44555555555554332 455667778888888888899999999998764 77 7899999
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
...++|..+|+.+++++... .+|++.|.+.++..++.. +.++..++..++.+++++..++++.+
T Consensus 148 ~~~niG~~ig~~l~g~l~~~---------------~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (475)
T TIGR00924 148 MSINIGSFISPLLAGVIAEN---------------YGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDIGSVPDPLSGQGKT 211 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------------cChHHHHHHHHHHHHHHH-HHHHHcccccccCCCCCCCcchhhhh
Confidence 99999999999998873222 189999988775544433 33333332211111111000000000
Q ss_pred CccchHHH----------------------H-------------HHH-----HHHHHhcchHHHHHHHHHHHHHHHhhHh
Q 012976 264 QSSDVHEA----------------------F-------------LWE-----LFGTFRYFSGTIWIILIVTALTWLGWFP 303 (452)
Q Consensus 264 ~~~~~~~~----------------------~-------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (452)
. ...... . .+. ..+.-|+..+.+..+++...+.+..+..
T Consensus 212 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q 290 (475)
T TIGR00924 212 Y-GKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDAVARNKMYAYIVLFLEAVVFWVLYAQ 290 (475)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000 0 000 0000011001233333444444544444
Q ss_pred HHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH----HHHHh-hCCchhH--HHHHHHHHHHH
Q 012976 304 FLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME----KLCRK-WGAGFIW--GISNILMALCF 376 (452)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g----~l~dr-~g~~~~~--~~~~~~~~~~~ 376 (452)
.....+.+..++. +.+.. .+ ....+ ....++.+..++..++.. ++.|| .+++... .+|+++.++++
T Consensus 291 ~~s~l~l~~~~~~-~~~~~---~~--~ip~~-~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~ 363 (475)
T TIGR00924 291 MPTSLNFFADNNM-HHEML---GM--SVPVI-WFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASF 363 (475)
T ss_pred hhhHHHHHHHHhc-ccccc---ce--EECHH-HHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4444444443222 11100 01 11111 222334555555555444 44444 2233333 67888888888
Q ss_pred HHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeee
Q 012976 377 LAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGL 445 (452)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~ 445 (452)
..+.+.....+. +...+.+..+....+.+++-....+..++++.+..|++.|| .++|+.
T Consensus 364 ~~~~~~~~~~~~--------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g--~~~g~~ 422 (475)
T TIGR00924 364 LTFAASIWFADA--------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG--QMLGMW 422 (475)
T ss_pred HHHHHHHhhcCC--------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHH
Confidence 777654211111 11125667778888999999999999999999999998864 444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-20 Score=175.90 Aligned_cols=326 Identities=17% Similarity=0.190 Sum_probs=204.5
Q ss_pred HHhC--CCchhh----HHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 012976 59 QELG--IPHAWA----SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (452)
Q Consensus 59 ~~~g--~s~~~~----g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (452)
+.+| .++.+. +.+.+++.+++++++.+.|.++| |+|||..+++... ....+.++..++..
T Consensus 47 ~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~----~~GRK~~l~~~~~-l~~~~~~~~~~s~~--------- 112 (485)
T KOG0569|consen 47 ERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLAD----RFGRKNALLLSNL-LAVLAALLMGLSKS--------- 112 (485)
T ss_pred HhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchHHHHHHHH-HHHHHHHHHHHHHH---------
Confidence 4456 444444 55566888999999999999999 9999987777444 44444444433322
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccc
Q 012976 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (452)
Q Consensus 133 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~ 212 (452)
.....+++++|++.|+..+.......-++.|..|++.|| ........+..+|.+++..++. |.+.+.
T Consensus 113 ---~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG--~~g~~~~~~~~~g~ll~~~~~l--------~~ilGt 179 (485)
T KOG0569|consen 113 ---APSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRG--ALGTLLQIGVVIGILLGQVLGL--------PSLLGT 179 (485)
T ss_pred ---hhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhcc--HHHHHHHHHHHHHHHHHHHHcc--------HHhcCC
Confidence 234578899999999999999999999999999999999 8888888888999888876642 333322
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-CCCCC----------cc--cccC---ccchHHH-----
Q 012976 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ-SAPFS----------EE--GHEQ---SSDVHEA----- 271 (452)
Q Consensus 213 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~----------~~--~~~~---~~~~~~~----- 271 (452)
. ..|.+.+.+..+..+ ..++.+.++||+|+..-.+ ++.++ .+ +++. .++.+++
T Consensus 180 ~-----~~W~~l~~~~~i~~~-~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~ 253 (485)
T KOG0569|consen 180 E-----DLWPYLLAFPLIPAL-LQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKK 253 (485)
T ss_pred C-----cchHHHHHHHHHHHH-HHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccc
Confidence 1 367777776655544 4455667889998743221 11000 00 0000 0000000
Q ss_pred HHHHHHHHHhcc--hHHHHHHHHHHHHHH-HhhHhHHHhhHHHHHhHhhCCCCCcccccccccc--hhhHHHHHHHHHHH
Q 012976 272 FLWELFGTFRYF--SGTIWIILIVTALTW-LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVR--MGALGLMLNSVVLG 346 (452)
Q Consensus 272 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~ 346 (452)
...++++.+++. ++.....+...+.+. .+......|.+..+... |.. .+.+.....++...
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~a--------------G~~~~~a~~an~~~g~v~~ 319 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTA--------------GFTPEEAQYANLGIGIVNL 319 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHc--------------CCCHHHHHHHHHHHHHHHH
Confidence 111345566652 122333333344433 34556666666555211 222 22444455677788
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH-hhccch
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT-YSVPYA 425 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~ 425 (452)
+.++++.++.||.|||++++.+..++.++.+++.......+.. . ..-.+..++...+..+.++.. .++++-
T Consensus 320 ~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-------~-~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 320 LSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-------G-SWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-------h-hHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 8999999999999999999999999988887776654222110 0 001122334444555555554 688999
Q ss_pred hhhhhcccccCccc
Q 012976 426 LVSIRTESLGLGQG 439 (452)
Q Consensus 426 ~~~~~~~~~~~g~g 439 (452)
+.+|.+|++.|...
T Consensus 392 i~aELf~~~~R~aa 405 (485)
T KOG0569|consen 392 IGAELFPQSARSAA 405 (485)
T ss_pred HHHHhCCccchHHH
Confidence 99999999987543
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=185.82 Aligned_cols=313 Identities=13% Similarity=0.109 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
........++.+.++++++.++.|++.+.+.++.++..++.|++.| |+||||.+.+ +.++..++.++..+.+-..
T Consensus 48 ~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~----r~~r~~~i~~-g~ll~~lg~ll~alphf~~ 122 (633)
T TIGR00805 48 YNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGT----KLHRPIVIGI-GCAIMGLGSFLLSLPHFLS 122 (633)
T ss_pred HHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhc----ccCcceEEEe-cHHHHHHHHHHHhChHHhc
Confidence 4455556777778999999999999999999999999999999999 9999998777 4445555555555443110
Q ss_pred -cccCC-------------------C--C----------C--CC--chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccC
Q 012976 126 -WLLGD-------------------R--G----------D--FR--PRAIAVFVFGFWILDVANNMTQGPCRALLADLTG 169 (452)
Q Consensus 126 -~~~~~-------------------~--~----------~--~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 169 (452)
.+.++ . + . .. ...+..+++++++.|+|.+...+...+++.|++|
T Consensus 123 ~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~ 202 (633)
T TIGR00805 123 GRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK 202 (633)
T ss_pred CCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC
Confidence 00000 0 0 0 00 1135567789999999999999999999999999
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHhhcccccccee-cccc------ccccccccccchhHHHHHHHHHHHHHHHHHHhc
Q 012976 170 KDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI-LPFT------LTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (452)
Q Consensus 170 ~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~-~p~~------~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (452)
+++|+ +..++......+|..+|+.+++++..... .+.. .+.....+.+.|+..|++.+++.++..++.+++
T Consensus 203 ~~~~~--~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~ 280 (633)
T TIGR00805 203 SKNSP--LYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFF 280 (633)
T ss_pred ccccH--HHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 99999999999999999999887322100 0000 000000111247777888877776666554443
Q ss_pred cccCCCCCCCC-CCCCC-cc--c-ccCc----cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHH
Q 012976 243 AHEVPLGSHDQ-SAPFS-EE--G-HEQS----SDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMG 313 (452)
Q Consensus 243 ~~e~~~~~~~~-~~~~~-~~--~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (452)
.++.|+...++ .+.++ +. + +++. ....++..+..++.++| |.++...+..++....+..+..|.|.|+.
T Consensus 281 p~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n--~~f~~~~l~~~~~~~~~~~~~~~lP~yl~ 358 (633)
T TIGR00805 281 PKALPKEGKRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCN--PIYMLVILAQVIDSLAFNGYITFLPKYLE 358 (633)
T ss_pred ccccCCcccccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333221111 00000 00 0 0000 01122334567788888 89999999999988888899999999984
Q ss_pred hHhhCCCCCcccccccccchhhHHHHHHHH-HHHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHH
Q 012976 314 REIYGGEPNEGQNYATGVRMGALGLMLNSV-VLGITSVLMEKLCRKWGA--GFIWGISNILMALCFLA 378 (452)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~~~~~g~l~dr~g~--~~~~~~~~~~~~~~~~~ 378 (452)
..++.++... .+......+ +.+++.++.|++.||++. |+.+..+.++..+++++
T Consensus 359 -~~~g~s~~~a----------g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 359 -NQYGISSAEA----------NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred -HHcCCcHHHH----------HHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 3444332221 112222233 456788999999999984 56666776666665544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=161.27 Aligned_cols=336 Identities=12% Similarity=0.116 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
++..+......+...+.++...++.+.+++ +.|++.++.|.+.++..+...+.+|+.|.++| |.|.||.++....
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~D----klg~kK~Ll~~i~ 81 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISD----KLGLKKHLLWFIA 81 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHH----HCTTCSHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcc----hhhhhHHHHHHHH
Confidence 345666777777777789999999999995 59999999999999999999999999999999 9998887654332
Q ss_pred HHHH--HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 109 ISIA--VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 109 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
+..+ ..+....+.+-. ....+...+++....++......+...+++.+.... .+ .-.|-.-...
T Consensus 82 ~l~~l~~pff~~v~~pll----------~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--~~--feYG~~R~wG 147 (412)
T PF01306_consen 82 ILLLLFGPFFIYVFGPLL----------QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--NG--FEYGRARMWG 147 (412)
T ss_dssp HHHHTCHHHHHHTHHHHH----------HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--HS--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--hc--CCcchHHHHh
Confidence 2222 222222221110 001112223333334444555556666666666532 23 4455577778
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
++|.+++..++|.+.. -+.+..|++..+..++..++.++..|+.+++...++... .
T Consensus 148 Sig~ai~s~~~G~L~~----------------i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~--------~ 203 (412)
T PF01306_consen 148 SIGFAIASLLAGILFN----------------INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG--------A 203 (412)
T ss_dssp HHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS--------S
T ss_pred hHHHHHHHHHhheeee----------------eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc--------c
Confidence 8888888888776211 145567777665555555444444444433222111110 0
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHH--HHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL--MLNSVV 344 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~ 344 (452)
++++...++..+.+|+ |++|.+.+........+..+-...+.|.. ..|.. .+.....++. ....+.
T Consensus 204 ~~~~~~~~~~~~l~k~--~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~-~~f~~---------~~~g~~~~G~l~s~~v~~ 271 (412)
T PF01306_consen 204 KKDKVSLKDVLSLFKM--RNFWFFVLFVIGVAAIYDVFDQQFPIYFA-SFFQS---------AGQGNQMYGYLWSVQVFL 271 (412)
T ss_dssp ------HHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSS---------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcc---------cccChhHHhHHHHHHHHH
Confidence 1133346788899999 99999887766666555555444555542 22210 0111112232 234555
Q ss_pred HHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccc
Q 012976 345 LGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPY 424 (452)
Q Consensus 345 ~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 424 (452)
.++.-.+.+++.+|+|.|+.++++..++++-..+..+.+ +.+.+...-.+-|+..+.......
T Consensus 272 E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-----------------~~~~i~~~klLH~~e~~l~lva~f 334 (412)
T PF01306_consen 272 EALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-----------------NPWVISLIKLLHALEFPLLLVAAF 334 (412)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------------SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-----------------chHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778999999999999999999999999999998886 677788888899999999998899
Q ss_pred hhhhhhcccccC
Q 012976 425 ALVSIRTESLGL 436 (452)
Q Consensus 425 ~~~~~~~~~~~~ 436 (452)
-++.+.+|++..
T Consensus 335 kYI~~~fd~rls 346 (412)
T PF01306_consen 335 KYITAHFDKRLS 346 (412)
T ss_dssp HHHHHHS-GGGH
T ss_pred HHHHHhCCHhHH
Confidence 999999998854
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=175.83 Aligned_cols=320 Identities=14% Similarity=0.153 Sum_probs=206.8
Q ss_pred hhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHH
Q 012976 67 WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGF 146 (452)
Q Consensus 67 ~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (452)
+.+++.++..++..+++++.|+++| ++|||+.+++ +.+...++.++..++++. ..+.++|
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d----~~GRk~~l~~-~~~~~~iG~ii~~~a~~~---------------~~l~~GR 149 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGD----RIGRKKTLLL-AVVLFLIGAIIIALAPSW---------------YQLIVGR 149 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHH-HHHHHHHHHHHHHHhhhH---------------HHHHHHH
Confidence 4589999999999999999999999 9999998888 555666666677666654 7889999
Q ss_pred HHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHH
Q 012976 147 WILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFF 226 (452)
Q Consensus 147 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~ 226 (452)
.+.|+|.+........+++|..|++.|| ...+..+....+|..++..++...... + .+||..+.
T Consensus 150 ~l~G~g~G~~~~~~piy~sEiap~~~RG--~l~~~~~l~~~~Gi~~~~~~~~~~~~~---~-----------~~Wr~~~~ 213 (513)
T KOG0254|consen 150 ILTGLGVGGASVLAPVYISEIAPAHIRG--TLVSLYQLFITIGILLGYCINYGTSKV---Y-----------AGWRIPLG 213 (513)
T ss_pred HHhccchhhhhhcchhhHhhcCChhhhH--HHHHHHHHHHHHHHHHHHHHhhhhccC---C-----------ccHHHHHH
Confidence 9999999999999999999999999999 999999999999999886555441110 0 28998888
Q ss_pred HHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc---------cccCccchHHHHHH-----H---------HHHHHh-c
Q 012976 227 LDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE---------GHEQSSDVHEAFLW-----E---------LFGTFR-Y 282 (452)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----~---------~~~~~~-~ 282 (452)
+..+.+++..+. .+++||+|+...+..+.++.+ ++++.+ .+....+ + ....++ .
T Consensus 214 ~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 291 (513)
T KOG0254|consen 214 LALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVE-VELELLKIKLLVEAEVAEGKASWGELFSPK 291 (513)
T ss_pred HHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHhhhcccccccHHHhcCcc
Confidence 877777666666 888999887543322111100 000000 0000000 0 011111 1
Q ss_pred chHHHH-HHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchh-hHHHHHHHHHHHHHHHHHHHHHHhhC
Q 012976 283 FSGTIW-IILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMG-ALGLMLNSVVLGITSVLMEKLCRKWG 360 (452)
Q Consensus 283 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~i~~~~~g~l~dr~g 360 (452)
..++.. ...+..+.+..++.....|.+..+.... .... .....+.++...++.++..++.||+|
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g--------------~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~g 357 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG--------------LKSDTFLASIILGVVNFLGTLVATYLVDRFG 357 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC--------------CCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 122233 3344444455555566666666542211 1111 23334456667777788899999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHH-HHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 361 AGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIF-TILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
||+.++.+...+.++++++........++.. ......+..+... ...........++++.+.+|.+|.+.|+.+
T Consensus 358 Rr~lll~s~~~m~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~ 432 (513)
T KOG0254|consen 358 RRKLLLFGAAGMSICLVILAVVGVFALYYPN-----SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKG 432 (513)
T ss_pred cHHHHHHhHHHHHHHHHHHHHHHHHhccCCC-----cccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhh
Confidence 9999999999999999988776533322100 0001122222222 222333333467788899999999988765
Q ss_pred ceee
Q 012976 440 GHFY 443 (452)
Q Consensus 440 ~~~g 443 (452)
.+++
T Consensus 433 ~s~~ 436 (513)
T KOG0254|consen 433 ASLA 436 (513)
T ss_pred HHHH
Confidence 5443
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=157.41 Aligned_cols=326 Identities=13% Similarity=0.079 Sum_probs=203.9
Q ss_pred HHHHHHHH-HHHhCCCchh-hHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 50 QLSLLTPY-VQELGIPHAW-ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 50 ~~~~~~~~-~~~~g~s~~~-~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
..++..++ .+++|+++++ .|.+.+++..++++..++.|+++| |+|.|+.+.+.... ..+...+..+.++
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaD----rlG~K~vL~l~~l~-Wsl~t~L~~fa~S---- 114 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTD----YLRYKPVLVLQALS-FVCVWLLLLLGTS---- 114 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHHH-HHHHHHHHHHHHH----
Confidence 33444444 4899999999 999999999999999999999999 99999988775444 4444444545443
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecc
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p 207 (452)
+..+.+.+++.|++.+... +...++.+++|+++|+ ++.++...+..+|.++++++++++ ..
T Consensus 115 -----------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~--ratsi~~sg~~vG~~Ia~~L~qll-~s---- 175 (511)
T TIGR00806 115 -----------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQ--RAAAYSRAAVLLGVFLSSVLGQLL-VT---- 175 (511)
T ss_pred -----------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-Hh----
Confidence 4778899999999999998 9999999999999999 999999999999999999998761 11
Q ss_pred ccccccccccccchhHHHHHH--HHHHHHHHHHHHhccccCCCC----CCC--C-----C-CCCCcccc-cCcc--c---
Q 012976 208 FTLTSACNVDCANLKSAFFLD--VIFIAITTCISASAAHEVPLG----SHD--Q-----S-APFSEEGH-EQSS--D--- 267 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~e~~~~----~~~--~-----~-~~~~~~~~-~~~~--~--- 267 (452)
.+|++-..+. ......+.++..+++|..++. +.+ + + +....++. +..+ +
T Consensus 176 -----------~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (511)
T TIGR00806 176 -----------LGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCR 244 (511)
T ss_pred -----------cCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhh
Confidence 1666544332 222333334444556633321 000 0 0 00000000 0000 0
Q ss_pred --hHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHH
Q 012976 268 --VHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVL 345 (452)
Q Consensus 268 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 345 (452)
.-+..+.++++..+| +.+....+-..+...++.-+..|. +.++..-....+.|+.+.+ .+..+.+
T Consensus 245 ~~~~~~l~~~~~~~y~n--~~vl~WSlWwa~a~~g~~qv~~Y~-----Q~LW~~v~~~~~~yNG~ve------A~~tllg 311 (511)
T TIGR00806 245 DSFLVRMLSELVTIYRN--PQLLLWSLWWVFNSAGYYLITYYV-----HTLWGTLDESLNKYNGAVD------AASTLLG 311 (511)
T ss_pred hHHHHHHHHHHHHHhcC--cchhhhhHHHHHHhhHHHHHHHHH-----HHHHHHcCCCccccCCHHH------HHHHHHH
Confidence 012345566666777 555555555555555554444433 2333222111112554332 2234556
Q ss_pred HHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhcc
Q 012976 346 GITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (452)
Q Consensus 346 ~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (452)
.+.++..|++..++.+-. .+.+..++.+..++++...+ +.|..++..++++..+....++.
T Consensus 312 a~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~-----------------~Iw~~Y~~yvlf~~~y~flitia 374 (511)
T TIGR00806 312 AITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSH-----------------DIWVLYVTYVLFRGIYQFLVPIA 374 (511)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhccc-----------------chHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888865553322 23333334444444444443 78888899999999998888888
Q ss_pred chhhhhhcccccCcccceeeeee
Q 012976 424 YALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 424 ~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
..-+++....+. -|+.+|+.+
T Consensus 375 ~~~iA~~L~~~~--~aLvFGiNt 395 (511)
T TIGR00806 375 TFQIASSLSKEL--CALVFGINT 395 (511)
T ss_pred HHHHHHHhcccc--eEEEEecHH
Confidence 777777766654 367777644
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-17 Score=163.44 Aligned_cols=359 Identities=15% Similarity=0.110 Sum_probs=203.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchhHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCGAI 109 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~i~~~~~ 109 (452)
.++......+...++++....+++.|+ +++|.++++.+++.+.+........+++|+++| | +|||+.++.+..+
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaD----r~~G~r~~~~~g~~~ 97 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGD----KVLGTKRVIMLGAIV 97 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hccchHHHHHHHHHH
Confidence 456666667777788888888999998 889999999888888776666666678999999 9 5999988875444
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
..++..+..++++. ...+.+++.+.+++.+...+...+++.|++|++++....+.++.+.+.++|
T Consensus 98 -~~ig~~l~~~~~~~--------------~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG 162 (500)
T PRK09584 98 -LAIGYALVAWSGHD--------------AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIG 162 (500)
T ss_pred -HHHHHHHHHHhccc--------------HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHH
Confidence 44444444443211 234456677788888888888889999999865432115788889999999
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHH---HhccccCCCCCCCCCCCCCccc-----
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEG----- 261 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~----- 261 (452)
..+|+.+++++... .+|++.|.+.++..++..+.. ....+|.+++++++ +.+....
T Consensus 163 ~~~gp~i~g~l~~~---------------~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 226 (500)
T PRK09584 163 SFFSMLATPWLAAK---------------YGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFE-PINYRKLLLTIV 226 (500)
T ss_pred HHHHHHHHHHHHHh---------------hCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCcc-ccchhhHHHHHH
Confidence 99999998873222 289999998765444433222 22333321111110 0000000
Q ss_pred -------------ccCccchH----------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhH-hh
Q 012976 262 -------------HEQSSDVH----------EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE-IY 317 (452)
Q Consensus 262 -------------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (452)
.+.+..+. ....++..+.-+..+++.+..+. .++....+.......+.++... ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~ 305 (500)
T PRK09584 227 GVVALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIR 305 (500)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 00000000 00000000000010122222222 1222222222222233332210 01
Q ss_pred CCCCCcccccccccchhhHHHHHHHHHHHHHHHHH----HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCC
Q 012976 318 GGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLM----EKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRG 393 (452)
Q Consensus 318 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~----g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (452)
..+.... .+ ....+.+ ..++.+..++..++. +++.||.+..+.+.+|+++.+++++.+.......+.+
T Consensus 306 ~~~~~~~-g~--~i~~~~~-~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~---- 377 (500)
T PRK09584 306 NVEHSIL-GI--AVEPEQY-QALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDA---- 377 (500)
T ss_pred hcccccc-ce--EECHHHH-HHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence 1111110 01 1112111 223444444444444 5555555666788899999999998877764221110
Q ss_pred CCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 394 HDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
...+.+.......+.|++-....+...+++.+..|++.||+
T Consensus 378 ----~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~ 418 (500)
T PRK09584 378 ----GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGF 418 (500)
T ss_pred ----CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence 01134567777888999999999999999999999998754
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=171.33 Aligned_cols=257 Identities=12% Similarity=0.020 Sum_probs=188.2
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchh
Q 012976 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (452)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (452)
++.+....+.+.+.+++.++++++.+++|.+.| |++-.+.+...+.+..+.+.+... .++
T Consensus 74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~----r~~ls~~l~~~~~~w~~~~~~~~~-~~s--------------- 133 (495)
T KOG2533|consen 74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGD----RFPLSKGLSVSGILWGLFGFLTAA-VHS--------------- 133 (495)
T ss_pred cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHH----hCChHHHHHHHHHHHHHHHHHHHH-Hhh---------------
Confidence 677888889999999999999999999999999 888666666555554444433332 333
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccc
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~ 218 (452)
++.+++.+++.|+..+..+|+...++..++.+++|+ .-+++.....++|+++|++++..+... ......
T Consensus 134 ~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g--~r~~~~~a~~~~g~i~ggliA~g~~~~---------~~~~~~ 202 (495)
T KOG2533|consen 134 FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERG--LRMGIWYASASLGNIFGGLIAYGVFKL---------NGSGGL 202 (495)
T ss_pred hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhh--hhHHHHHHhcchhhHHHHHHHHHhhhh---------cCCCCc
Confidence 477888999999999999999999999999999999 899999999999999999887652110 000011
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC------CcccccCccchHHHHHHHHHHHHhcchHHHHHHHH
Q 012976 219 ANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPF------SEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILI 292 (452)
Q Consensus 219 ~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (452)
.||||.|.+.+++.++..++.++++|+.|.+..-.++++ +.++..+....++....++++.+++ +.+|.+++
T Consensus 203 ~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d--p~vw~~~l 280 (495)
T KOG2533|consen 203 AGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKD--PGVWPFSL 280 (495)
T ss_pred CCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhc--hhHHHHHH
Confidence 399999999999999999999999999887432111111 0010111111111445678888999 99999999
Q ss_pred HHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012976 293 VTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (452)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 359 (452)
..++.....+++..|.|.++.+ ..+.+..+. ........++++++.++.|+++||.
T Consensus 281 ~~~~~~lv~~~~~~~lpl~l~~-~~~~s~~~a----------~~ls~~~~~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 281 CYFFLKLVNYGFSYWLPLYLKS-NGGYSELQA----------NLLSTPYDVGGIVGLILAGYLSDRL 336 (495)
T ss_pred HHHHHhhccccHHHHHHHHHHc-CCCcChHHh----------ccccchHHhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999864 211222111 1112235677888899999999994
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=171.80 Aligned_cols=277 Identities=16% Similarity=0.142 Sum_probs=203.2
Q ss_pred HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhH
Q 012976 60 ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAI 139 (452)
Q Consensus 60 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (452)
+++.+..+-+++.+.+..+..+++.+.|++.| |+|-|+++..++ ++.+++.++...+.+. ..
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~----k~G~r~v~~~~~-~~sa~~t~l~P~aa~~-------------~~ 128 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLAD----KFGARRVFFISG-LISALLTLLTPLAASI-------------GF 128 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHH----HcCchHHHHHHH-HHHHHHHHHHHHHHHh-------------cc
Confidence 46678889999999999999999999999999 999999888854 4455555555554432 12
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccccccc
Q 012976 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (452)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~ 219 (452)
+.+++.|+++|++.+...++...+.++|.|+++|+ +..++...+..+|.+++..++|++.... .
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers--~~~ail~~g~q~g~v~~mp~sg~lc~s~--------------~ 192 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNERS--TFIAILTAGSQLGTIITMPVSGLLCESS--------------L 192 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHhccC--------------C
Confidence 35678999999999999999999999999999999 9999999999999999988887733221 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc--ccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 012976 220 NLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSE--EGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 297 (452)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
||+..|++.+++.++..++.+++..|+|.+.+.-.++|.+ ++.+.++..+++.....++.+++ +++|.+.+..++.
T Consensus 193 GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts--~~vwai~~~~f~~ 270 (466)
T KOG2532|consen 193 GWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTS--PPVWAIWISAFGG 270 (466)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcC--HHHHHHHHHHHHH
Confidence 9999999999999999888888888877653322111111 00000000010011234667788 8999999999999
Q ss_pred HHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC---------chhHHHH
Q 012976 298 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA---------GFIWGIS 368 (452)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~---------~~~~~~~ 368 (452)
..+...+..|.|.|+. ++++.+..+. ++...+..+...+..++.|.++||..+ |..-.++
T Consensus 271 ~~~~~~l~~y~PtY~~-~VL~f~v~~~----------G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~ 339 (466)
T KOG2532|consen 271 NWGFYLLLTYLPTYLK-EVLGFDVRET----------GFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIA 339 (466)
T ss_pred HHHHHHHHHHhhHHHH-HHhCCChhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHH
Confidence 9999999999999995 4544433322 333445677788888999999998855 2233456
Q ss_pred HHHHHHHHHHHHHHH
Q 012976 369 NILMALCFLAMLILY 383 (452)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (452)
....+++++.+.+..
T Consensus 340 ~~~~ai~l~~l~~~~ 354 (466)
T KOG2532|consen 340 FGGPAVFLLVLAFTS 354 (466)
T ss_pred HHHHHHHHHeeeecC
Confidence 666666666666653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-17 Score=158.12 Aligned_cols=357 Identities=16% Similarity=0.081 Sum_probs=231.8
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh----CCC--------------------------chhhHHHHhhhhhh
Q 012976 30 LRKLLKVASVAGGIQ-FGWALQLSLLTPYVQEL----GIP--------------------------HAWASIIWLCGPVS 78 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----g~s--------------------------~~~~g~~~~~~~~~ 78 (452)
+|.++...+..++.+ +.......+.|.+++++ +.. .+..++..++..+.
T Consensus 3 r~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l~ 82 (477)
T PF11700_consen 3 RREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGLL 82 (477)
T ss_pred hhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHHH
Confidence 345555555556654 24445556777776432 111 12346778888899
Q ss_pred hhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcch
Q 012976 79 GLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQG 158 (452)
Q Consensus 79 ~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 158 (452)
.++..|+.|.++| +.|+||.++.....+++++...+.+.... .++...+...+..++++....
T Consensus 83 ~all~P~lGa~aD----~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~-------------~~~~~~~l~iia~v~~~~~~v 145 (477)
T PF11700_consen 83 QALLAPFLGAIAD----YGGRRKRFLLIFTLLGVLATALLWFVSPG-------------QWWLALVLFIIANVGYEASNV 145 (477)
T ss_pred HHHHHHHHHHHHc----ccccchHHHHHHHHHHHHHHHHHHHhCcc-------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 98989888877777666666655554211 123444445555688888888
Q ss_pred hHHHHhhhccCcccc--------------------------chhhhhhHHHHHHHHHHHHHHhhccccccceeccccccc
Q 012976 159 PCRALLADLTGKDHR--------------------------RTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTS 212 (452)
Q Consensus 159 ~~~~~~~~~~~~~~r--------------------------~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~ 212 (452)
...++++|..+++.+ + +..+.-.....+|+++.-.+.-..... + +.
T Consensus 146 fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vS~~G~a~Gy~G~~v~l~i~l~~~~~---~---~~ 217 (477)
T PF11700_consen 146 FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRG--RVSGLGWALGYIGGLVALLISLLLVIS---P---GS 217 (477)
T ss_pred HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHc---C---CC
Confidence 899999999999888 7 888888888888887765554331000 0 00
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcc--hHHHHHH
Q 012976 213 ACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYF--SGTIWII 290 (452)
Q Consensus 213 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 290 (452)
. +....+.|..+.+.++..++..+..++.+||+|+.+..++.. ...+..++++++.+|+. .|+....
T Consensus 218 ~-~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~----------~~~~~g~~~l~~t~k~~~~~~~~~~f 286 (477)
T PF11700_consen 218 T-ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGS----------SYLRFGFKRLWRTFKEIRKLRQLFLF 286 (477)
T ss_pred c-cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcch----------hHHHHHHHHHHHHHHHHHhChHHHHH
Confidence 0 111236788999999999999999999999987642221100 01222333333333321 2778888
Q ss_pred HHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc--hhHHHH
Q 012976 291 LIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG--FIWGIS 368 (452)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~--~~~~~~ 368 (452)
++..++..-+...+..+...|..+++ +.+.. .-....+...+.+++++++.+++.||+|.| +++..+
T Consensus 287 Lia~~l~~dg~~ti~~~~~i~a~~~l-g~s~~----------~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~ 355 (477)
T PF11700_consen 287 LIAYFLYSDGVNTIISFAGIYATEVL-GMSTT----------QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLIS 355 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence 88888888888888877777775332 22211 112233346888899999999999999999 777776
Q ss_pred HHHHHHHHHHHHH--HHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeee
Q 012976 369 NILMALCFLAMLI--LYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 369 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
..+..+..+...+ ... . ....+.+..++...+.|+..|..++..-++.+++.|++++ +..+|+++
T Consensus 356 l~~~~~i~~~g~~G~~~~---~--------~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e--~efFgly~ 422 (477)
T PF11700_consen 356 LILWIIIPLYGLFGFWPS---F--------FGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE--AEFFGLYA 422 (477)
T ss_pred HHHHHHHHHHHHHHhhhc---c--------cCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh--hHHHHHHH
Confidence 6655333322222 210 0 0001456678888899999999999999999999999886 44444443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=156.83 Aligned_cols=331 Identities=14% Similarity=0.177 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
.+...++...+.++...++++.|+++.|+|..|+|.+.++..+...++++++|+++| |.++++-.+....+...+.
T Consensus 6 rLs~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aD----r~~~~~~~l~~~~l~~~~~ 81 (400)
T PF03825_consen 6 RLSLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIAD----RFGSAKRILALLSLLSALA 81 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----HhhhHHHHHHHHHHHHHHH
Confidence 345555565567788889999999999999999999999999999999999999999 7765444443344444444
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
.......++. +.++....+..+......+...++..+...+++ .-.|-.....++|-.++.
T Consensus 82 ~~~~~~~~~f---------------~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~~----~~YG~iRlwGSiGf~~~~ 142 (400)
T PF03825_consen 82 LLLLAFSSSF---------------WWLFVIMLLFSFFFSPTMPLSDSIALSYLGDRG----KDYGRIRLWGSIGFIVAA 142 (400)
T ss_pred HHHHHHhccH---------------HHHHHHHHHHHHHHccHHHHHHHHHHHHccccc----CCCCcchhhhhHHHHHHH
Confidence 4333333332 334444555556666667777888888776432 334445556666666554
Q ss_pred hhc-cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHH
Q 012976 195 ATG-SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFL 273 (452)
Q Consensus 195 ~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (452)
... +.... .. + .++....+++.+.+.++.... .+.+|+.|.+++++++ .++...
T Consensus 143 ~~~~~~~~~---------~~-~--~~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~~------------~~~~~~ 197 (400)
T PF03825_consen 143 LAFGGLLGG---------YL-G--ISGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKES------------VKKLLG 197 (400)
T ss_pred HHHHHHHHh---------hh-c--cccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCCC------------cccccc
Confidence 321 11000 00 0 012233455554444333322 3345665522221100 011223
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 012976 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 353 (452)
++..+.+|+ |++....+..++.......+..|.+.|+.+ . ++ +. .........+..+..++.-...+
T Consensus 198 ~~~~~llk~--~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~-~-gg-------~~--~~~~g~~~~l~~~aEi~~f~~~~ 264 (400)
T PF03825_consen 198 LDALKLLKN--PRFLVFLLAAFLIGISHAAYYTFFSIYLQE-L-GG-------YS--GSTIGILWALGVVAEIPFFFFSG 264 (400)
T ss_pred hHHHHHhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-c-cc-------ch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888 888888888888888888888888888842 2 10 00 01111222245566677778999
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
++.+|+|.|+++.++.+..++-..++.... + |........++...+-|+.++........++.+.+|+
T Consensus 265 ~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~----~--------~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~ 332 (400)
T PF03825_consen 265 RFLKRFGIKWLLLLALVAYAVRWLLYAYFS----D--------PWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPP 332 (400)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHhc----C--------CcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 999999999999999999999998888773 0 1100111112223568999999999999999999999
Q ss_pred ccCcc
Q 012976 434 LGLGQ 438 (452)
Q Consensus 434 ~~~g~ 438 (452)
+.|++
T Consensus 333 ~~~at 337 (400)
T PF03825_consen 333 ELRAT 337 (400)
T ss_pred cchHH
Confidence 97643
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=148.53 Aligned_cols=339 Identities=12% Similarity=0.086 Sum_probs=233.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.........+...+........+|.+.+.++++..+++++..++..++.+.+++.|++.+ |+|+|+.++++. .+.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~k----k~gyk~gi~lgL-~l~ 88 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIK----KLGYKAGIVLGL-LLY 88 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHH----HhhhHHHHHHHH-HHH
Confidence 344455555555666667777888888999999999999999999999999999999999 999999988844 445
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
+++..+++- .+....+..++.+.++.+.|.+...+..+.++..+.++++.. +-+.+.+..+++|.+
T Consensus 89 avg~~lF~p------------Aa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~--~rlnl~q~fn~lGa~ 154 (422)
T COG0738 89 AVGAALFWP------------AASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAA--FRLNLAQAFNGLGAI 154 (422)
T ss_pred HHHHHHHhh------------hhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHH--HHHHHHHHhhhhHHH
Confidence 544444431 112234567778888999999999999999999999998777 778889999999999
Q ss_pred HHHhhccccccce----eccccccccccccccchhHHHHHHHHHHHHHHHHHHhc-cccCCCCCCCCCCCCCcccccCcc
Q 012976 192 LGYATGSFSGWFK----ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 192 ig~~~~~~~~~~~----~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
++|.+++.+.... .-+......-...-..++..|...+.+..++.+..... .||.+...+++.+
T Consensus 155 ~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~~~----------- 223 (422)
T COG0738 155 LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSLGA----------- 223 (422)
T ss_pred HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccccc-----------
Confidence 9999998832210 00000000000011357777877766655554433321 1222211111100
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
+++. ...+.+|+ |.++...+..|+...+......|.+.|+.+. -+.+. ..+......+-++.+
T Consensus 224 --~~~~--~~~~l~~~--~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-~g~~~----------~~aa~~~s~~~~~~~ 286 (422)
T COG0738 224 --SGSA--GLSSLFQN--KHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-LGLNE----------QQAAYYLSFFWVGFM 286 (422)
T ss_pred --cccc--hHHHHHhC--hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc-CCccH----------HHHHHHHHHHHHHHH
Confidence 0000 34566777 8888888888988888888889999988543 11111 223344455667778
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
+++++..++.+|+...|.+....++..+.++...+.+ + ...+....+.|+..+..+|..+++
T Consensus 287 vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-----------------g-~v~~~~l~~ig~F~simfPTIfsl 348 (422)
T COG0738 287 VGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-----------------G-VVALYALFLIGLFNSIMFPTIFSL 348 (422)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-----------------C-hHHHHHHHHHHHHhHHHHHHHHHH
Confidence 8999999999999999988777766655555555553 2 445666778889999999999999
Q ss_pred hhhhccccc
Q 012976 427 VSIRTESLG 435 (452)
Q Consensus 427 ~~~~~~~~~ 435 (452)
..+..|++.
T Consensus 349 al~~l~~~t 357 (422)
T COG0738 349 ALKNLGEHT 357 (422)
T ss_pred HHhccCccc
Confidence 998888543
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-19 Score=157.20 Aligned_cols=316 Identities=16% Similarity=0.155 Sum_probs=178.5
Q ss_pred CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHH
Q 012976 62 GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAV 141 (452)
Q Consensus 62 g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (452)
+.+....|.+.+.+.+..++.+|.+|.++| |+|||.++++ +.+..++.+.+.+.+.++ ..
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD----~yGRkpvll~-c~~~va~s~ll~~~S~~F---------------~a 123 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSD----RYGRKPVLLA-CLIGVALSYLLWALSRNF---------------AA 123 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhh----hhCchHHHHH-HHHHHHHHHHHHHHHHHH---------------HH
Confidence 344567899999999999999999999999 9999987766 666677777777666553 45
Q ss_pred HHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccch
Q 012976 142 FVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANL 221 (452)
Q Consensus 142 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 221 (452)
+++.|++.|+..+ ...+..++++|..++++|+ ++++..+..+++|.++||.+|+++.. ++-.. ..+
T Consensus 124 fv~aR~l~Gi~kg-nl~v~rAiisdV~sek~r~--l~ms~v~~a~~lGfilGPmIGgyla~---f~~~~--------g~~ 189 (451)
T KOG2615|consen 124 FVLARFLGGIFKG-NLSVIRAIISDVVSEKYRP--LGMSLVGTAFGLGFILGPMIGGYLAQ---FSSIS--------GSY 189 (451)
T ss_pred HHHHHHhhhhccC-chHHHHHHHHhhcChhhcc--ceeeeeehhhhcchhhcchhhhHHHh---hHhhh--------ccC
Confidence 5666888777655 4577899999999999999 99999999999999999999998433 11000 011
Q ss_pred hHHH--HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc-CccchHHHHHHHHHHHHhcchH----HHHHHHHHH
Q 012976 222 KSAF--FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE-QSSDVHEAFLWELFGTFRYFSG----TIWIILIVT 294 (452)
Q Consensus 222 ~~~f--~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 294 (452)
...+ ++..+....-.....+++||+-+.+++.+++.+..+.. ..+..++.....-...+||.|. ..+..+...
T Consensus 190 p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 190 PFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHH
Confidence 1111 22222222223445567888754433331111110000 0000011111222344555321 112222222
Q ss_pred HHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhC--CchhHHHHHHHH
Q 012976 295 ALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILM 372 (452)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~ 372 (452)
.+.+...+..+.+...++.+.-|+.++.+. |.- +...++.+.+......+..+|.. .+-.+..+..++
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~-----G~v-----l~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~ 339 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQ-----GKV-----LSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLI 339 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCChhhh-----eee-----eehhhHHHHHHHHhccccccccccchhhHHHHHHHHH
Confidence 222223333334444444444455544433 111 11123333333344444445543 233444444444
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 373 ALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
.-.++++.... ....+.+...+..+..+...+....++..+.|.++||.
T Consensus 340 vP~~llls~~~-----------------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~ 388 (451)
T KOG2615|consen 340 VPAFLLLSLAR-----------------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGT 388 (451)
T ss_pred HHHHHHHhccc-----------------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchH
Confidence 33333333332 33455666667777777777777899999999999864
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=162.68 Aligned_cols=323 Identities=15% Similarity=0.161 Sum_probs=189.4
Q ss_pred HHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCC
Q 012976 51 LSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD 130 (452)
Q Consensus 51 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (452)
...++.+.+++|-+ ....|+.+...+..++..|+.|+++| .+|||..++. +.++.+++.++...+++.
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSD----lfGRr~~~i~-g~~l~vvG~Iv~atA~~~------ 131 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSD----LFGRRYFFII-GSLLGVVGSIVCATAQNM------ 131 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHH----HhcchHHHHH-HHHHHHhHHHHhhcCCcH------
Confidence 44556666899876 56678888899999999999999999 9999987766 666677777776666554
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccc
Q 012976 131 RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 210 (452)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~ 210 (452)
..++.+..+.|+|.+... .....++|..|.+.|. ...++.....-+....++.++.....
T Consensus 132 ---------~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~-------- 191 (599)
T PF06609_consen 132 ---------NTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRG--LGLAIASIPFIITTWISPLIAQLFAA-------- 191 (599)
T ss_pred ---------HHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHhcc--------
Confidence 566778888888866554 4456689999999888 65555544333333333333322111
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhcc-ccCCCCCCCCCC--CCC---------------------------c-
Q 012976 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAA-HEVPLGSHDQSA--PFS---------------------------E- 259 (452)
Q Consensus 211 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~--~~~---------------------------~- 259 (452)
..+|||.|++..+...+..+..+++. |+++++.+.++. .+. .
T Consensus 192 -------~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~ 264 (599)
T PF06609_consen 192 -------HSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYP 264 (599)
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCC
Confidence 13999999998877666555444333 322211111110 000 0
Q ss_pred ccccCccchHHH-----------HHHHH----------HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhC
Q 012976 260 EGHEQSSDVHEA-----------FLWEL----------FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYG 318 (452)
Q Consensus 260 ~~~~~~~~~~~~-----------~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (452)
..++++..--.+ ...|. .+++|+ +|.+...++..++..+.++....+.|... ..+|+
T Consensus 265 ~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~-~r~~~~~lvi~fi~G~~~~s~~~l~p~~~-~~vf~ 342 (599)
T PF06609_consen 265 YYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKD-RRGFAALLVISFISGMNFFSVNILWPQQV-VNVFG 342 (599)
T ss_pred CCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcc
Confidence 011111100000 00110 234444 25566666666666666667666677655 34565
Q ss_pred CCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 012976 319 GEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAG-FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP 397 (452)
Q Consensus 319 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (452)
.++... ....+.....+.+..++.++.+.+..|++|- ..++++..++.+++.++.... |
T Consensus 343 ~d~~~~-------~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-------------~ 402 (599)
T PF06609_consen 343 SDPISI-------TEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-------------P 402 (599)
T ss_pred CCCccc-------ceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHcc-------------C
Confidence 544321 0011222234556667778889999988874 455677666665555555553 3
Q ss_pred CCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccC
Q 012976 398 PNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 398 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
++.+ ..+....+.|++.+.........++-..|++.-
T Consensus 403 ~n~~--~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~i 439 (599)
T PF06609_consen 403 DNKN--AAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDI 439 (599)
T ss_pred CCcc--hHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHH
Confidence 3212 334556666777776666666666667777654
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=146.35 Aligned_cols=341 Identities=13% Similarity=0.071 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 45 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
.........+.+.+ ...|.+.-+..++......+..+++..+|.++| ++|||+.+........+.+ .+...+++
T Consensus 91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d----~~grr~~f~~T~l~t~v~~-~is~~spn 165 (528)
T KOG0253|consen 91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSAD----TIGRRKGFNLTFLVTGVFG-VISGASPN 165 (528)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehh----hhhcchhhhhhHHHHHHHH-HhhcCCCC
Confidence 34455555555555 567888889999999999999999999999999 9999998877444433333 34445555
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (452)
+ ..+.+.+.+.++|.+. .+...++-.|..|..+|. ..+-.. ..+.+|.+....+.-....+
T Consensus 166 f---------------~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~--~~~V~~-~~waig~v~ea~law~vm~~ 226 (528)
T KOG0253|consen 166 F---------------ASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW--LLTVMS-FFWAIGQVFEALLAWGVMSN 226 (528)
T ss_pred e---------------ehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCC--cchhHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4 5566788888888887 777888899999999998 555545 88899998888776542221
Q ss_pred eeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCC-------------------------
Q 012976 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFS------------------------- 258 (452)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~------------------------- 258 (452)
. ||||........ +.......+.++|+|+-...+.+++.
T Consensus 227 ~---------------gwr~~l~~~~~p-l~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 227 F---------------GWRYLLFTSSTP-LMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred h---------------hHHHHHHHHHhH-HHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeeh
Confidence 1 899988777643 33444456678888764322111100
Q ss_pred ---cccccC-ccchHHHHHHH----HHHHHhc-chHHHHHHHHHHHHHHHhhHhHHHhhHHHHH-hHhhCCC----CCcc
Q 012976 259 ---EEGHEQ-SSDVHEAFLWE----LFGTFRY-FSGTIWIILIVTALTWLGWFPFLLFDTDWMG-REIYGGE----PNEG 324 (452)
Q Consensus 259 ---~~~~~~-~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~ 324 (452)
+++++. ..+.+.+.-++ ...++.. ..+.-..+....|...+.+++.....+...+ .+.++.. +.+.
T Consensus 291 ~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~ 370 (528)
T KOG0253|consen 291 IDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTEL 370 (528)
T ss_pred hhhhhhhhhchhhhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHH
Confidence 000000 00000000011 1111110 0122222222223333333333322222211 0000000 0000
Q ss_pred cc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCch
Q 012976 325 QN---YATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGI 401 (452)
Q Consensus 325 ~~---~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (452)
+. ........-.-+++..+....+.++.+++.||+|||+.+..++++.+++.+++.... .
T Consensus 371 e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~-----------------~ 433 (528)
T KOG0253|consen 371 ETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCK-----------------T 433 (528)
T ss_pred HhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhc-----------------C
Confidence 00 000111112234456777788899999999999999999999999988888777664 1
Q ss_pred HHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccccee
Q 012976 402 VIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHF 442 (452)
Q Consensus 402 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 442 (452)
........+..-+.....+.+.|.+..|+.|...|+.|...
T Consensus 434 rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGt 474 (528)
T KOG0253|consen 434 RNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGT 474 (528)
T ss_pred cchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhh
Confidence 12233333444455666778889999999999988775543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-16 Score=151.12 Aligned_cols=362 Identities=12% Similarity=0.037 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCC-CCcchhHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFIVCG 107 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~-Grr~~~i~~~ 107 (452)
++.++......+...+.++....++|.|+ +++|+++.+.+.+.+.+.....++.+++|+++| |+ ||||.++++.
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaD----RilGrrr~iliG~ 83 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLAD----KVLGNRMAVMLGA 83 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HccCcHHHHHHHH
Confidence 34566666667777788888889999998 668999999999999999999999999999999 98 9999887744
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCcc--ccchhhhhhHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD--HRRTRVANAYFSLF 185 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 185 (452)
.+ ..++..++....+. . ....++..+..++.+...+...++++|.+|++ +|. .+.++....
T Consensus 84 il-~~lg~lll~~~~~~------------~--~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~--sgf~i~Y~~ 146 (493)
T PRK15462 84 LL-MAIGHVVLGASEIH------------P--SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRD--GGFSLMYAA 146 (493)
T ss_pred HH-HHHHHHHHHHhhcc------------h--hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcccc--ceehHHHHH
Confidence 44 44444333322110 0 11223333344566666677788999999876 577 789999999
Q ss_pred HHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCc
Q 012976 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQS 265 (452)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 265 (452)
.++|+.++|.+.+++... .+|++.|.+.++..++..+ .++..++...+....++++.++++...
T Consensus 147 ~nlG~~iap~l~g~L~~~---------------~Gw~~~F~iaaigm~l~li-~~~~~~~~l~~~~~~~~~~~~~~~~~~ 210 (493)
T PRK15462 147 GNVGSIIAPIACGYAQEE---------------YSWAMGFGLAAVGMIAGLV-IFLCGNRHFTHTRGVNKKVLRATNFLL 210 (493)
T ss_pred HHHHHHHHHHHHHHHHhh---------------hChHHHHHHHHHHHHHHHH-HHHHhhhhhccCCCCCCCCchhhhHHH
Confidence 999999999998873222 2899999887654433333 333222211111000000000000000
Q ss_pred c----------------ch--HHHHHHH----------------HHHHHhc-chHHHHHHHHHH---HHHHHhhHhHHHh
Q 012976 266 S----------------DV--HEAFLWE----------------LFGTFRY-FSGTIWIILIVT---ALTWLGWFPFLLF 307 (452)
Q Consensus 266 ~----------------~~--~~~~~~~----------------~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~ 307 (452)
. .. .+..... ..+.... .+++++.+.... .+.|..+.....-
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~s 290 (493)
T PRK15462 211 PNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSS 290 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 0 00 0000000 0000000 012332222222 2222222221111
Q ss_pred hHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--ch-----hHHHHHHHHHHHHHHHH
Q 012976 308 DTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGA--GF-----IWGISNILMALCFLAML 380 (452)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~--~~-----~~~~~~~~~~~~~~~~~ 380 (452)
.+.|..+++ +.+.++..... ...-.++.+..++.+++..++-.|..+ |. -..+|+++.+++++.+.
T Consensus 291 l~lfa~~~v------d~~~~g~~ip~-~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~ 363 (493)
T PRK15462 291 ISLYIDRFV------NRDMFGYTVPT-AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILT 363 (493)
T ss_pred HHHHHHHhc------cchhcceeeCH-HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 222221111 10011111112 222334566666666666666555522 21 25788888888888776
Q ss_pred HHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeee
Q 012976 381 ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGL 445 (452)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~ 445 (452)
+.....+++ ...+.+.++....+..++--...|+..++++++.|++.+ |..+|+.
T Consensus 364 ~~~~~~~~~--------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~--g~~mg~w 418 (493)
T PRK15462 364 LSARWSAMY--------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVT--GVLTGIY 418 (493)
T ss_pred HHHhhcCCC--------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHH--HHHHHHH
Confidence 654222110 011445566777778888888899999999999999886 4455544
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-17 Score=145.73 Aligned_cols=341 Identities=12% Similarity=0.071 Sum_probs=229.0
Q ss_pred HHHHHHHH-HHhC---CCc----hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 51 LSLLTPYV-QELG---IPH----AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 51 ~~~~~~~~-~~~g---~s~----~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
..+.|+|. +..+ .++ +..+...++..+..++..|+.|.++| ..|+||.++.......+.+..++++.+
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD----~~g~Rk~~~~~f~~i~i~~~~~L~~i~ 110 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIAD----YPGPRKKFFGFFTAIGIISTFLLWFIP 110 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhc----cCCCcchHHHHHHHHHHHHHHHHHHhC
Confidence 34566665 3332 233 34677788888999999999999999 999999998877777777777777665
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc---
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF--- 199 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~--- 199 (452)
+. ..++..++...+..++.........+++.+..++++-+ +..+.......+|+.+.-...-.
T Consensus 111 ~~------------s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~~--riS~lg~~~gylgs~i~li~~~~~~~ 176 (438)
T COG2270 111 PG------------SYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNMG--RISGLGWALGYLGSVILLIFVVLGFA 176 (438)
T ss_pred CC------------chHHHHHHHHHHHHHhcchhheehhhHhhhhcCccccC--cccccccccccccchHHHHHHHHHHh
Confidence 41 23455556666777899999999999999999998877 77666665666666554433211
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHH
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGT 279 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (452)
.......+...-......+..-|..+.+.++..++..+..++..|+.++....+. ......-++...++++.
T Consensus 177 ~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~--------~~l~~g~k~L~~t~k~i 248 (438)
T COG2270 177 LGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPP--------TALRNGFKELKSTFKEI 248 (438)
T ss_pred cccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccch--------HHHHHHHHHHHHHHHHH
Confidence 0000011111111222233578889999999999999888888887765321110 00001122223334444
Q ss_pred HhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012976 280 FRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW 359 (452)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~ 359 (452)
.++ +++....++.++..-+......+...|-. ..++.+.. +. .+..+..++.+++++++.|++.||+
T Consensus 249 ~~~--~~i~~FLiA~~~~~DGv~til~~~~~fg~-~~~gls~~---------~l-ll~g~~~~vvA~lg~ii~g~Ld~rf 315 (438)
T COG2270 249 RGR--KNLVLFLIARFFYIDGVNTILAMGGVFGA-ADLGLSST---------EL-LLIGIALSVVAALGAIIAGFLDERF 315 (438)
T ss_pred hcc--cchHHHHHHHHHHHhhHHHHHHHHHHHHH-HHcCccHH---------HH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 67888888888887777777777776653 22221111 11 1222346788889999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 360 GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 360 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
|.|+++.++.++..+..+...+.. .....++...+.|...|...+..-++..+.+|+++. +
T Consensus 316 g~k~vl~~~lvi~~~~~~~~~~~~-----------------~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~--~ 376 (438)
T COG2270 316 GSKPVLMIGLVILSIAALYLIFLE-----------------GELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKE--G 376 (438)
T ss_pred CCceeehHHHHHHHHHHHHHHHcc-----------------ccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc--c
Confidence 999999999988877776666654 233455666788999999999999999999999985 6
Q ss_pred ceeeeeeeee
Q 012976 440 GHFYGLYVYK 449 (452)
Q Consensus 440 ~~~g~~n~~~ 449 (452)
..+|.+|++.
T Consensus 377 ~fFglyaltg 386 (438)
T COG2270 377 RFFGLYALTG 386 (438)
T ss_pred ceeehhhhhh
Confidence 6788887754
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=149.92 Aligned_cols=293 Identities=13% Similarity=0.175 Sum_probs=196.6
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchh
Q 012976 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (452)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (452)
.+.+-+++++|++.+...+.+.+.+|+.|.+.| |+|+|-++++ +.+.+..+.+++.+..++
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~----~iGy~ipm~~-Gl~vmf~sTilFafg~sy-------------- 159 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLID----RIGYKIPMVA-GLFVMFLSTILFAFGNSY-------------- 159 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHH----HhccccHHHH-HHHHHHHHHHHHHHcchh--------------
Confidence 345667889999999999999999999999999 9999988877 566666666777776554
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc-cchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccccc
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~ 217 (452)
+.+++.|.++|+|.++.+++..++++|.+|++. |+ +++|..-.+.++|-++||..||++....
T Consensus 160 -~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~--~vmGialgfislG~lvgPpfGGilYe~~------------- 223 (464)
T KOG3764|consen 160 -PMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERG--SVMGIALGFISLGVLVGPPFGGILYEFA------------- 223 (464)
T ss_pred -HHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh--HHHHHHHHHHhccceecCCcccchHhhc-------------
Confidence 788899999999999999999999999999876 58 8999999999999999999999843322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 012976 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALT 297 (452)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (452)
|.+..|.+.++++++-..+.++.++.++.++++.+ +. ..+++.+++ +..+.........
T Consensus 224 --Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~~--------------~~---~~~~~Ll~d--P~I~~~agai~~~ 282 (464)
T KOG3764|consen 224 --GKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDSTE--------------QG---TPMWSLLMD--PYILLIAGAITFS 282 (464)
T ss_pred --CCcCcHHHHHHHHHHHHHHHHheeCccccCccccc--------------cC---ccHHHHHhC--chHhhhhcchhhc
Confidence 88899999999998888877777765443332110 11 134556666 5555444333333
Q ss_pred HHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHH
Q 012976 298 WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALC 375 (452)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~ 375 (452)
..+....-.-++.++.+... .+ .+..|+ ..+-..+...++..+.|.++||+++.+ ....+++..+.+
T Consensus 283 n~~lafLePtlslwm~e~m~--~p----~w~~G~-----~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~ 351 (464)
T KOG3764|consen 283 NSSLAFLEPTLSLWMLETMF--TP----GWEVGL-----AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVS 351 (464)
T ss_pred cchHHHhCcccHHHHHHhcc--CC----Ccceee-----eecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 33222222223444433332 11 111121 122245566778899999999999543 334444444444
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
.....+.+ +...+++.-..++++.+.............++.++
T Consensus 352 ~~~iP~~~-----------------~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh 394 (464)
T KOG3764|consen 352 SGPIPFAT-----------------SIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRH 394 (464)
T ss_pred hchhHhhh-----------------hHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhh
Confidence 44445554 44455555555555555555544455555555543
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.2e-17 Score=155.08 Aligned_cols=316 Identities=13% Similarity=0.079 Sum_probs=221.5
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 012976 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (452)
Q Consensus 52 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (452)
.+.+.+.++++.+..+.+|+.++......+..|+.+.+.| |+|.|++.++ +.++...++++..++++.
T Consensus 67 v~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~----rfg~R~v~i~-G~~v~~~g~~lssF~~~i------- 134 (509)
T KOG2504|consen 67 LLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCN----RFGCRTVMIA-GGLVAALGLLLSSFATSL------- 134 (509)
T ss_pred hhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHh----hcCchHHHHH-HHHHHHHHHHHHHHHhhH-------
Confidence 3455667999999999999999999999999999999999 9999998888 556677777777777665
Q ss_pred CCCCchhHHHHH-HHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccc
Q 012976 132 GDFRPRAIAVFV-FGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 210 (452)
Q Consensus 132 ~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~ 210 (452)
+.++ ....+.|+|.++.+.+....+..+++ ++|+ .++|+...+.++|.++-+.+...+..
T Consensus 135 --------~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~--lA~Gia~~GsG~G~~~~~~l~~~l~~-------- 195 (509)
T KOG2504|consen 135 --------WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRA--LATGIAVSGTGVGTVVFPPLLKYLLS-------- 195 (509)
T ss_pred --------HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHH--HHHhhhhccCCcceeeHHHHHHHHHH--------
Confidence 4443 44567789999999999999998886 6788 89999999888888777666544211
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCC-----------------------CCCCC-Ccc------
Q 012976 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD-----------------------QSAPF-SEE------ 260 (452)
Q Consensus 211 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~-----------------------~~~~~-~~~------ 260 (452)
. .|||+.+++.+.+.+-..+......|..+..++. ..++. ...
T Consensus 196 -~------~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (509)
T KOG2504|consen 196 -K------YGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNL 268 (509)
T ss_pred -H------hCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccch
Confidence 1 2999999998888766666666655522221100 00000 000
Q ss_pred ---cccCccchHHHHHHHH----HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccch
Q 012976 261 ---GHEQSSDVHEAFLWEL----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRM 333 (452)
Q Consensus 261 ---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 333 (452)
++.+.+.+........ .+.+++ +.++.+.+...+..++++....|++.|... .+.+. ..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~--~g~~~----------~~ 334 (509)
T KOG2504|consen 269 ATLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGFNVPFVYLPSYAKS--LGLSS----------ND 334 (509)
T ss_pred hhhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCh----------hh
Confidence 0000000000111111 467788 889999999999999988888899988742 22111 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHH
Q 012976 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTI 411 (452)
Q Consensus 334 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (452)
....+.+.++..++++++.|+++|+...++ +..++.++.+++.+...+.+ +.+.+.....+
T Consensus 335 aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~-----------------~~~~l~~~~~~ 397 (509)
T KOG2504|consen 335 AAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFAT-----------------TYVGLIVFSIL 397 (509)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHH
Confidence 233444568888999999999999987433 45566666666665555554 56778888889
Q ss_pred HhHHhHhHhhccchhhhhhcccccC
Q 012976 412 LGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 412 ~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
+|+..+........++.|+++.++.
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l 422 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKL 422 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhc
Confidence 9999999888887888899888764
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=136.95 Aligned_cols=336 Identities=16% Similarity=0.067 Sum_probs=206.4
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCC-CcchhHHHHHHHHHHHHHHHhccccc-ccccCCCCCCC
Q 012976 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADI-GWLLGDRGDFR 135 (452)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~G-rr~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 135 (452)
..|++++....+.+.+...+.. ...+.+|+.||+.++.+| ||.++++.+......+..+..+..-. +....+.+...
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 4789999999998888877754 469999999995554455 66778888877777665554433211 00000001122
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccc
Q 012976 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACN 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~ 215 (452)
........+.+.+.|+|.+...++..++++|..|+++|+ ++.++...+.-+|.+++..+.+......
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~--~~v~ivw~Mli~G~iv~ai~~g~lL~~~----------- 152 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRP--RVVAIVWVMLIVGIIVSAIVFGRLLDPF----------- 152 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHcccc-----------
Confidence 233345566677889999999999999999999999999 9999999999999999998877622211
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHH
Q 012976 216 VDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTA 295 (452)
Q Consensus 216 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (452)
........+...+++.++..++..+.. |++..+..+.+ + + ++.+..+.+++...+ ++..++....+
T Consensus 153 -s~~rL~~v~~~~a~i~~~l~~ia~wg~-E~r~~~~~~~~-~------~---~~~~f~~a~~~~~~~--~~a~~f~~fl~ 218 (403)
T PF03209_consen 153 -SPERLIQVIQGVALIALLLNLIALWGQ-EPRRSRRAAAA-E------R---PRPPFREAWRQVWAS--PQARRFFVFLF 218 (403)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCcccccCC-C------C---CCccHHHHHHHHHhC--CChhHHHHHHH
Confidence 001223334444444444444444433 32222221000 0 0 011222334444455 55555555555
Q ss_pred HHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH-hhCCchhHHHHHHHHHH
Q 012976 296 LTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR-KWGAGFIWGISNILMAL 374 (452)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~d-r~g~~~~~~~~~~~~~~ 374 (452)
+...+++.--.-+-+|-+ ++|+.+..+. .--......+..++-.+.+++.. |.++++...++..+.++
T Consensus 219 l~t~a~~~QD~iLEPygg-~Vfgmsv~eT----------T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~ 287 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGG-EVFGMSVGET----------TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGAL 287 (403)
T ss_pred HHHHHHHhhHHHcCCchh-HHcCCCHHHH----------HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 555544433333333332 4444433322 11222334555566666666665 67888888899998888
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeeee
Q 012976 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYVY 448 (452)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~~ 448 (452)
++.++.... + ..+.+.+.....++|++.|.......+.+.+..++++. |+.+|.....
T Consensus 288 ~f~lii~a~-------------~-~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~a--G~~mG~WGaa 345 (403)
T PF03209_consen 288 AFALIILAG-------------P-LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRA--GLFMGAWGAA 345 (403)
T ss_pred HHHHHHHHH-------------h-cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcch--hHHHHHHHHH
Confidence 888777664 1 11456677888899999999988888999999877764 5666665443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-15 Score=145.34 Aligned_cols=166 Identities=12% Similarity=0.089 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.+....+.+.+.+++|++..+.+++.++... ..+..++.|+++| |+|||+++++ +.+...++.++.+++.+
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~D----r~G~R~vlli-g~ll~~iG~ll~ala~~--- 113 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYD----YLGPRPIFVL-SMTVFCLGTLLFALTFQ--- 113 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHH----HhCcHHHHHH-HHHHHHHHHHHHHHHhc---
Confidence 3444566677779999999999999877443 3456778899999 9999998887 44555555555555411
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh-cccccccee
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT-GSFSGWFKI 205 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~-~~~~~~~~~ 205 (452)
......++.+.+.+.+.|++.+...+.....+.+++| ++|| ++.|+...+.++|..+.+.+ .++..
T Consensus 114 ------~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG--~a~Gi~~~~~gLGsaI~~~l~~~l~~---- 180 (591)
T PTZ00207 114 ------EVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG--AVVAIMKTFTGLGSAILGSIQLAFFS---- 180 (591)
T ss_pred ------ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 1112345777888888899988888888888999997 6789 99999999999999764433 33210
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
.+|+..|++.+++.++..++.+.++++++
T Consensus 181 -------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 181 -------------DNTSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred -------------HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 26778888888888777777777666654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=128.77 Aligned_cols=300 Identities=15% Similarity=0.161 Sum_probs=211.3
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
......+.++.+.+++|+|.+..|++++++.+...+.+|+..+++. |+|.+|.+.. +.+...++..+=...
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar----~~g~er~l~~-~Llli~~G~~iR~~~---- 97 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLAR----RFGEERSLFL-ALLLIAAGILIRSLG---- 97 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHhhHHHHHH-HHHHHHHHHHHHhcc----
Confidence 5566677888888999999999999999999999999999999999 9999987776 444444444332211
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
....++.+..+.|.+.+..+...++++-+.+|+ +-+ ..+|++....++|+.+++.+...+.
T Consensus 98 ------------~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~--~mtglYs~sl~~~aaLaa~lavpla---- 158 (395)
T COG2807 98 ------------GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVG--LMTGLYSTSLGAGAALAAALAVPLA---- 158 (395)
T ss_pred ------------cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chh--hHHhHHHHHHHHHHHHHhhhhhHHH----
Confidence 235677888888899998888899999999984 456 7999999999999999887754311
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchH
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSG 285 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (452)
.+. .+||....+-+...++..++.+... .+++....+. + ..+..+..|+ |
T Consensus 159 -----~~~-----~gW~~aL~~WAl~allAl~~WlPq~-~r~~~~~~~~--------------~---~~~~~~vw~~--~ 208 (395)
T COG2807 159 -----QHS-----GGWRGALGFWALLALLALLIWLPQA-LREQAASIAT--------------K---LVSVRKVWRS--P 208 (395)
T ss_pred -----Hhh-----ccHHHHHHHHHHHHHHHHHHHhhhc-cccccccccc--------------c---cccccccccC--c
Confidence 111 3899988887777666554443321 1111111000 0 0011235566 7
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccch--hhHHHHHHHHHHHHHHHHHHHHHHhhC-Cc
Q 012976 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRM--GALGLMLNSVVLGITSVLMEKLCRKWG-AG 362 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~i~~~~~g~l~dr~g-~~ 362 (452)
.-|.+.+..-++...++....|+|.++.+. |.+. +...+.+..+.+...++..+.+.+|.. +|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--------------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r 274 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILIDR--------------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR 274 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 788888888899999999999999987532 2222 223334467888889999999999865 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
+.......++.++.+.+.+.+ . +.+... ..++|++.+..++...+++.+..++.+
T Consensus 275 ~~~~~~~~~~l~G~~G~~~~P--------------~--~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~ 329 (395)
T COG2807 275 PLVVLALLLMLVGLVGLLLAP--------------G--QLPILW--ALLLGLGQGGAFPLALTLILLRSSDAA 329 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--------------h--hHHHHH--HHHHhCccchHHHHHHHHHHhhcCChH
Confidence 566666667777777776653 1 122222 578899999999988888887766553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-17 Score=139.42 Aligned_cols=322 Identities=13% Similarity=0.163 Sum_probs=197.0
Q ss_pred HHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCC
Q 012976 56 PYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFR 135 (452)
Q Consensus 56 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (452)
.+-.+.+++.++..++.++++....+...++|++.|| |+|-|.--++.+.+.++.-++ +.. ...
T Consensus 69 ~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr---~fgir~gtii~~~fv~~Gqli-Fa~------------Ggi 132 (459)
T KOG4686|consen 69 DFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDR---RFGIRLGTIILCIFVFLGQLI-FAA------------GGI 132 (459)
T ss_pred hhhcccccceeeeeeeeeeccCCCEEEeeecceeehh---hhhhhHHHHHHHHHHHHHHHH-HHh------------chH
Confidence 3446777888899999999999999999999999997 677776555544443333332 221 333
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccc
Q 012976 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACN 215 (452)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~ 215 (452)
...+|.+..+++++|+|.-......+.+...++..++.+ .++|+......+|..+-..+.++ +.+....
T Consensus 133 ~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn--~vfGlqlSvAR~GstvNf~lm~~---------ly~~~~~ 201 (459)
T KOG4686|consen 133 SHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELN--FVFGLQLSVARLGSTVNFLLMPF---------LYDTMGR 201 (459)
T ss_pred HHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcccc--chhhHHHHHHHhhceeeeeecHH---------HHHHHHH
Confidence 456789999999999988777777899999999999999 99999999999988776555443 3222211
Q ss_pred ccccchhH---HHHHHHHHHHHHHHHH---HhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHH
Q 012976 216 VDCANLKS---AFFLDVIFIAITTCIS---ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWI 289 (452)
Q Consensus 216 ~~~~~~~~---~f~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (452)
.+++--+. .............+++ .-...++..+....++....+ .+.+.+ .++..+++|.
T Consensus 202 ~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~e~g~~Ge---------~pkLtd----v~~f~ppfw~ 268 (459)
T KOG4686|consen 202 MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHLEEGFLGE---------EPKLTD----VNTFYPPFWV 268 (459)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhcCcccC---------Cccccc----ccccCccHHH
Confidence 11101111 1111111111111111 111211111111110000000 010111 1122378999
Q ss_pred HHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHH
Q 012976 290 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISN 369 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~ 369 (452)
+.++.++.+.+++++....+.+.. +-|+.++..+. .+ .......+.+.+++.|.++||+|++..+..+.
T Consensus 269 ~~iicv~yyva~fPFi~lg~~fF~-~rfGlS~~~a~---------~i-~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a 337 (459)
T KOG4686|consen 269 LVIICVLYYVAWFPFITLGPMFFQ-KRFGLSAVSAG---------NI-LSTVYGISAVLSPVFGAISDKYGFNLWWVASA 337 (459)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHH-HhhCCChhhcc---------ch-hhhhhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence 999999999999999888887774 55676655441 11 11123345567789999999999987766554
Q ss_pred HHHHH-HHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc--cceeeeee
Q 012976 370 ILMAL-CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ--GGHFYGLY 446 (452)
Q Consensus 370 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~--g~~~g~~n 446 (452)
.+..+ +-..+.+. .+.-+..+.++|++........|.+++..+|+++.|+ |+..++.|
T Consensus 338 ~~~tl~~H~~l~Ft-------------------~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqN 398 (459)
T KOG4686|consen 338 CILTLLGHSGLFFT-------------------FLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQN 398 (459)
T ss_pred HHHHHHHhhhHHhh-------------------hccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHh
Confidence 44333 22233322 2234556778888888888778899999999998765 44444444
Q ss_pred e
Q 012976 447 V 447 (452)
Q Consensus 447 ~ 447 (452)
+
T Consensus 399 L 399 (459)
T KOG4686|consen 399 L 399 (459)
T ss_pred h
Confidence 4
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.2e-16 Score=149.15 Aligned_cols=351 Identities=13% Similarity=0.052 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCC-CcchhHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGA 108 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~G-rr~~~i~~~~ 108 (452)
.........++...+. +.....+++++ +++|+++++.+...+...+...+ .+++|.++||.. .+| |||.+++.+.
T Consensus 26 ~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~-i~G~rRr~~l~~~~ 102 (468)
T TIGR00788 26 VVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFP-LFGYTKRWYLVLSG 102 (468)
T ss_pred hHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcC-CCCccchHHHHHHH
Confidence 3344555567777777 66666666776 57899999999988888888777 556999999432 123 3555555454
Q ss_pred HHHH-HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH---H
Q 012976 109 ISIA-VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS---L 184 (452)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~---~ 184 (452)
+... ..+..+...++ ......+..++.+++.+....+..++..|..+ ++++ ...+..+ .
T Consensus 103 ~l~~~~~~~~l~~~~~--------------~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~--~~~~~~s~~~~ 165 (468)
T TIGR00788 103 LLGSAILYGLLPGKVS--------------SAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS--AGPSLVSWMWG 165 (468)
T ss_pred HHHHHHHHHhcccccc--------------hHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC--cCCCeeeHHHH
Confidence 4442 22222211111 12233345667778888889999999999998 5544 3333333 3
Q ss_pred HHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC-CCCCCc--cc
Q 012976 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ-SAPFSE--EG 261 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~--~~ 261 (452)
..++|.++|+.+++.+... .+|+..|++.+++.++. .+..++.+|++.....+ .+++.. ..
T Consensus 166 ~~~~G~~vg~~l~G~l~~~---------------~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~ 229 (468)
T TIGR00788 166 ASATGGLISSLLGGPLLDK---------------TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMAL 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHh---------------cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhh
Confidence 3447888888888763221 17999998887776666 44456667754211111 000000 00
Q ss_pred -ccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHH-HHHhHhhCCCCCcccccccccchhhHHHH
Q 012976 262 -HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTD-WMGREIYGGEPNEGQNYATGVRMGALGLM 339 (452)
Q Consensus 262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 339 (452)
.....+..++..+++++.+++ |.++...+..++.+....... .+. +..+...+.++.. ......
T Consensus 230 ~~~~~~~~~~~~~~~l~~~l~~--~~i~~~l~fifl~~~~~~~~~--~~~f~~~~~~lG~s~~~----------~G~~~~ 295 (468)
T TIGR00788 230 LTLGVLANVKVQILGLRGAIQL--LEIAKPLIFIFLSYANLPGAS--GSVFCATTQCLPGGPSF----------SGMSKV 295 (468)
T ss_pred hhhhHHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHHHhhcCCCC--ceeEEEEcccCCCCcch----------hhhHHH
Confidence 000000122334556666777 777665544444211100000 000 0111112222211 122233
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
..+++.+++..+.+++.+|++.|+++.++.++.+++...........+.. .+ .| +.+.......+.+++.+..
T Consensus 296 ~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~--~g--i~---~~~~~~~~~~l~~~~~g~~ 368 (468)
T TIGR00788 296 VGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLA--FG--IS---DEVFVLGDSIIAEVLAQLK 368 (468)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccc--cC--CC---CeeeeeehhHHHHHHHHHH
Confidence 45677788889999999999999999998888877665533211000000 00 01 2223445556677777777
Q ss_pred hhccchhhhhhcccccCcc
Q 012976 420 YSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 420 ~~~~~~~~~~~~~~~~~g~ 438 (452)
......++++..|++.+|+
T Consensus 369 ~~~~~~~~~~~~p~~~egt 387 (468)
T TIGR00788 369 FMPFLVLLARLCPSGCESS 387 (468)
T ss_pred HccHHHHHHHhCCCCceeh
Confidence 7777899999999998654
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=148.99 Aligned_cols=311 Identities=12% Similarity=0.057 Sum_probs=194.8
Q ss_pred HHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCch
Q 012976 58 VQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (452)
Q Consensus 58 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (452)
.+....+.....+..+++.++..++..++|.++| |+|||++++++..+ .+++-....+++++
T Consensus 110 ~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD----~~GRk~~~~~~~~~-~~i~~~~~a~a~~~------------- 171 (521)
T KOG0255|consen 110 WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSD----RFGRKPVLLVSLLL-FIIFGILTAFAPNY------------- 171 (521)
T ss_pred hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHh----hcccHHHHHHHHHH-HHHHHHHHHHhCcH-------------
Confidence 3556677788889999999999999999999999 99999988885444 44444666677665
Q ss_pred hHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccccc
Q 012976 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (452)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~ 217 (452)
+.+++.|++.|++.+........+++|++++++|+ .+..+ ......++.+++..++++ .
T Consensus 172 --~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~--~~~~~-~~~~~~~~~~~~~~~a~~-----~----------- 230 (521)
T KOG0255|consen 172 --WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG--LALTL-GGFFFVGGLMLPAGAAYI-----T----------- 230 (521)
T ss_pred --HHHHHHHHHHHhhccchhHHhHhhheeecCcchhh--HHHHH-HHHHHHHHHHHHHHHHHH-----H-----------
Confidence 78899999999999999999999999999999999 88888 666777777777776651 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc-----------ccCccchH-HH-HH-----------
Q 012976 218 CANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG-----------HEQSSDVH-EA-FL----------- 273 (452)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~-~~----------- 273 (452)
.+||+.+++..+...+..++ +++.+|+++....+.+.++..+ ..+..+.. .. ..
T Consensus 231 -~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (521)
T KOG0255|consen 231 -RDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPK 308 (521)
T ss_pred -hhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCC
Confidence 28999999988777666554 6666788875433322211000 00000000 00 00
Q ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 012976 274 WELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLME 353 (452)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g 353 (452)
..+...++. +++....+...+.++.. ....|...+.. ..+ |.... ......+..........+
T Consensus 309 ~~~~~l~~~--~~l~~~~~~~~~~~~~~-~~~y~gl~~~~-~~l------------g~~~~-~~~~~~~~~~~p~~~~~~ 371 (521)
T KOG0255|consen 309 ISFLDLFRT--PRLRYRTLYLLFIWFVF-SLVYYGLSLNV-SGL------------GGNIY-LNFTLSGLVELPAYFRNG 371 (521)
T ss_pred CchhhhhcC--HHHHHHHHHHHHHHHHH-hHHHHhhhhhh-hhc------------CchHH-HHHHHHHHHHhhHHHHHH
Confidence 011223333 33333333333333211 11111111111 111 11111 111122334455556778
Q ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccc
Q 012976 354 KLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTES 433 (452)
Q Consensus 354 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 433 (452)
...||.|||.....+..+..++++...+.. ... ..+.......+...+.+..+...+...+|+.|+
T Consensus 372 ~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt 437 (521)
T KOG0255|consen 372 LLLPEFGRRPPLFLSLFLAGIGLLLFGWLP-------------DDL-GGWLHWILPLLGKFFIGSAFNLIFLYSAELIPT 437 (521)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHhh-------------ccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 999999999999999999999998888874 110 111233334444445555555557889999999
Q ss_pred ccCcccc
Q 012976 434 LGLGQGG 440 (452)
Q Consensus 434 ~~~g~g~ 440 (452)
..|+.+.
T Consensus 438 ~~r~~~~ 444 (521)
T KOG0255|consen 438 VVRNTAV 444 (521)
T ss_pred HHHHHHH
Confidence 8876544
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-14 Score=132.55 Aligned_cols=332 Identities=14% Similarity=0.007 Sum_probs=201.3
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchh
Q 012976 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRA 138 (452)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (452)
+-+| +....-|...++.+.+......+-|+.| |+|-|...++++..-++.+.+=..-+... ......
T Consensus 73 ~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ld----k~GLR~a~llgt~ln~iGa~Ir~iss~p~--------v~~~f~ 139 (480)
T KOG2563|consen 73 SFYG-SSSAADWLSMIYMVVSVPFGFAAMWILD----KFGLRTALLLGTVLNGIGAWIRLISSLPF--------VPPLFR 139 (480)
T ss_pred HHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhc----ccchHHHHHHHHHHHHHHHHHhhhccCcc--------ccccch
Confidence 4456 7777888888999999999999999999 99999888886665555444333222111 111122
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccc
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDC 218 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~ 218 (452)
..+...+..+.+...-.....-.-+..-|+++++|. .+..+...+..+|..+|.++.+.+ .|.-. +...
T Consensus 140 ~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra--~A~~~~v~~n~LGvavg~llppil-----V~~~~----~~~~ 208 (480)
T KOG2563|consen 140 RPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRA--IATVLGVMGNPLGVAVGFLLPPIL-----VPSSK----DSED 208 (480)
T ss_pred hhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhh--hhhhHHHhcchHHHHHHhhcccee-----cCCCC----Ccch
Confidence 235556666665555554444445667799999999 889988888999999998887762 22110 1111
Q ss_pred cchhH--HHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHH
Q 012976 219 ANLKS--AFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTAL 296 (452)
Q Consensus 219 ~~~~~--~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (452)
..|.. .|+...++..+...+..+..+++|+.+....+...+ +.+..+++++.++| +++..+.+.+..
T Consensus 209 ~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~---------~~~f~~si~~~~~n--~~F~il~~~ygi 277 (480)
T KOG2563|consen 209 NSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQ---------DASFPKSIKSCFKN--RQFIILAICYGI 277 (480)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhh---------cCcHHHHHHHHHcC--ccHHHHHHHHhh
Confidence 23433 355455555544455555666655554432111110 12366788999999 888777766655
Q ss_pred HHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHH
Q 012976 297 TWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF-IWGISNILMALC 375 (452)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~-~~~~~~~~~~~~ 375 (452)
....+.+....+-.-+. . ..|+. ...+..+. ...+++++++++.|.+.||.+.-+ +..+......++
T Consensus 278 ~~g~F~~l~~~l~~~l~--~--------sgY~~-~~aG~ig~-l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 278 GLGLFNSLSTLLNLALC--P--------SGYEG-VFAGYIGA-LMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred hHHHHHHHHHHhhhccc--c--------ccCCc-cccchhHH-HHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 44433333222211110 0 12221 22333333 356778899999999999997644 444555444444
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeeeeeeecC
Q 012976 376 FLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLYVYKIFF 452 (452)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n~~~~~~ 452 (452)
...+...+ ......+.++....++|.......++-+.+-.|..-+... |...|+.|++.+.|
T Consensus 346 ~~~l~~~t-------------~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E--~tSsGll~~~gq~f 407 (480)
T KOG2563|consen 346 TLMLLTCT-------------LFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE--GTSSGLLNLSGQIF 407 (480)
T ss_pred HHHHHHhh-------------ccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC--cccceeEEeehhHH
Confidence 32222222 0111345566677788888888888888888877655543 67889999887765
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-20 Score=180.08 Aligned_cols=321 Identities=14% Similarity=0.198 Sum_probs=183.5
Q ss_pred hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHH
Q 012976 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (452)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (452)
.+.++..+...++..++.++.|+++| |+|||+.+++. .++..++.++..++++. ...+.+.++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d----~~GRk~~~~~~-~~~~~i~~~~~~~~~~~------------~~~~~~~~~ 108 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLAD----RYGRKPALIIS-ALLMIIGSILIAFAPSY------------NNFWMLLIG 108 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccc----ccccccccccc-ccccccccccccccccc------------ccccccccc
Confidence 35688889999999999999999999 99999988884 44455555555555510 123677889
Q ss_pred HHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHH
Q 012976 146 FWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAF 225 (452)
Q Consensus 146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f 225 (452)
+++.|++.+...+....++.|..|+++|+ +..++.+....+|.+++..++..... ..+ ...||..+
T Consensus 109 R~~~G~~~g~~~~~~~~~~~E~~~~~~R~--~~~~~~~~~~~~G~~~~~~~~~~~~~------~~~------~~~Wr~~~ 174 (451)
T PF00083_consen 109 RFLIGFGIGGAYVVSPIYISEIAPPKHRG--FLSSLFQLFWALGILLASLIGYIVSY------YSD------NWGWRILL 174 (451)
T ss_pred ccccccccccccccccccccccccccccc--cccccccccccccccccccccccccc------ccc------cccccccc
Confidence 99999999999999999999999999999 89999998888888888766543111 000 12688888
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc------------ccc-Ccc-chHHHH---HHHHHHHHhcch--HH
Q 012976 226 FLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEE------------GHE-QSS-DVHEAF---LWELFGTFRYFS--GT 286 (452)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~------------~~~-~~~-~~~~~~---~~~~~~~~~~~~--~~ 286 (452)
.+.++..++. ++...++||+|+....+++.++.+ +++ ++. +..++. ....++.+++.. ++
T Consensus 175 ~~~~~~~l~~-~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 253 (451)
T PF00083_consen 175 IFGAIPSLLV-LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKR 253 (451)
T ss_pred cccccccccc-cccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence 8776665544 345577899986533222111100 000 000 000000 011222333310 12
Q ss_pred HHHHHHHHHHH-HHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhH
Q 012976 287 IWIILIVTALT-WLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (452)
Q Consensus 287 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 365 (452)
+...+....+. ..+......|.+.... .. + ............+...++.++..++.||+|||+++
T Consensus 254 ~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~ 319 (451)
T PF00083_consen 254 LLIALLLQFFQQFSGINFIFYYSPSIFE-NA-G------------ISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL 319 (451)
T ss_pred cccccccccccccccccccccccccccc-cc-c------------ccccccccccccccccccccccccccccccccccc
Confidence 22222222222 1222223333333221 11 1 11110111122344455666777999999999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhH-hHhhccchhhhhhcccccCcccce
Q 012976 366 GISNILMALCFLAML-ILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLA-ITYSVPYALVSIRTESLGLGQGGH 441 (452)
Q Consensus 366 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~g~g~~ 441 (452)
..+..+++++.+.+. ... ...+. ++. .....+....+.....+ ...++++.+..|.+|.+.|++|.+
T Consensus 320 i~~~~~~~~~~~~~~~~~~-~~~~~-------~~~-~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~ 388 (451)
T PF00083_consen 320 IIGLLLMAICSLILGIIFF-LGVSS-------SSW-WSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIG 388 (451)
T ss_pred ccccccccccccccccccc-ccccc-------ccc-cccccceeeeeccccccccccccccccccccccccccccccc
Confidence 999888888777665 111 00010 000 01112222222222222 335667788999999998765443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-17 Score=148.65 Aligned_cols=344 Identities=13% Similarity=0.055 Sum_probs=189.9
Q ss_pred CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHH
Q 012976 63 IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVF 142 (452)
Q Consensus 63 ~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (452)
.++...+.+..+..++..++++++|++.| |+|||+++....+ +++++.++..++... ......+..+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD----~~GRK~vYG~~li-ImIi~t~~~~~s~~~--------~~~~~~m~~L 147 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGD----KFGRKKVYGKELI-IMIICSALSGLSVGT--------TSPLGVMMTL 147 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHh----hhcchhhhhHHHH-HHHHHHHHhccCCCC--------CCCcchhhHH
Confidence 55667788888999999999999999999 9999999887444 444444465555443 3344566778
Q ss_pred HHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchh
Q 012976 143 VFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK 222 (452)
Q Consensus 143 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 222 (452)
...|+++|+|.|+-+|...+..+|....++|| ...+..-...+.|.+.|..++-.+..-.--|+-..........-||
T Consensus 148 ~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RG--a~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWR 225 (538)
T KOG0252|consen 148 CFFRFLLGIGIGGDYPLSATIMSESANKKTRG--AFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWR 225 (538)
T ss_pred HHHHHHhhccccCCCcchHHHhhhhhhhcccc--ceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHH
Confidence 88999999999999999999999999999999 6676666667777666665554411100000000000011113588
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCCCCCC-----------C--CC---CcccccCccchHHHHHHHHHHHHhcc-hH
Q 012976 223 SAFFLDVIFIAITTCISASAAHEVPLGSHDQS-----------A--PF---SEEGHEQSSDVHEAFLWELFGTFRYF-SG 285 (452)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-----------~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 285 (452)
..+.+.++.. +..++..+.+||+++-+...+ + .. +++..+......++....+.+.+... -+
T Consensus 226 l~~glg~vpa-~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~ 304 (538)
T KOG0252|consen 226 IIFGLGAVPA-LLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGK 304 (538)
T ss_pred HHHHHHHHHH-HHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccccCCCCcccccchHHHHHHHHHHH
Confidence 8777665443 444556667888765431000 0 00 00000000001111111122222220 12
Q ss_pred HHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhH
Q 012976 286 TIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIW 365 (452)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~ 365 (452)
.+...+...|+.-++.+....+....++. .+..+... .+..-...+-..+++.....+.+..+...++|++|||+..
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~--ig~~~~~~-~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq 381 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSA--IGVIPSAN-TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQ 381 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHh--hccCCCcc-hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHH
Confidence 33333444444444555555554444421 12222222 1111111111222222222333556777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHH-hHhHhhccchhhhhhcccccCcc
Q 012976 366 GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGP-LAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
+.+++++.+.++.+..... + .+ +....+++..+..+. --........+-+|.+|.+.|+.
T Consensus 382 ~~GF~~~~i~~~~~~~~y~---~-------~~---~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t 442 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYN---Q-------LE---NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRST 442 (538)
T ss_pred HhhHHHHHHHHHHHcCCcc---c-------cc---ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhh
Confidence 9999998887777665530 0 01 112222333332222 12234455677889999998764
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8e-15 Score=137.30 Aligned_cols=203 Identities=20% Similarity=0.169 Sum_probs=143.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCC-cc
Q 012976 25 RAKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RR 101 (452)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Gr-r~ 101 (452)
.++.+|+.++...+..+.....++...+-.-+|+++ .+.+++..|++.+...++.++.+|+.|+++. |.++ |+
T Consensus 28 ~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~----k~~~~k~ 103 (488)
T KOG2325|consen 28 ERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSN----KTGSVKK 103 (488)
T ss_pred ccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccc----ccCCccc
Confidence 344556666666666666666677777777789988 6777788999999999999999999999999 7664 77
Q ss_pred hhHHHHHHHHHHHHHHH-hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhh
Q 012976 102 PFIVCGAISIAVAVLLI-GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANA 180 (452)
Q Consensus 102 ~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 180 (452)
|++.+..+ ++++-++. ...... ....++++++|++.|+|.+. .....+++++....++|. ++++
T Consensus 104 Pli~s~ii-~~~g~llY~~l~~~~-----------~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~--rA~a 168 (488)
T KOG2325|consen 104 PLIVSFLI-AIIGNLLYLALAYVP-----------NGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRP--RAFA 168 (488)
T ss_pred CHHHHHHH-HHHHHHHHHHHHhcc-----------cchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchH--HHHH
Confidence 88885544 44444444 332111 11467888999999888664 466899999998889999 8999
Q ss_pred HHHHHHHHHHHHHHhhcccc-----ccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012976 181 YFSLFMAVGNILGYATGSFS-----GWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (452)
Q Consensus 181 ~~~~~~~~g~~ig~~~~~~~-----~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (452)
..+.+..+|.++||.++... ......|. ..-+-+...-|+.+++.++..++..++.+|.++...++
T Consensus 169 ~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~-------~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~ 239 (488)
T KOG2325|consen 169 ATSGGFVLGIILGPTIQLAFTPLGEKGFMILPG-------LIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDK 239 (488)
T ss_pred HhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCc-------ceEEecchHHHHHHHHHHHHHHHHHhheeecccCcccc
Confidence 98888888888888877651 11111111 01124555667777788888888888888877665443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-13 Score=124.93 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=160.2
Q ss_pred hhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccc-cccc
Q 012976 137 RAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACN 215 (452)
Q Consensus 137 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~-~~~~ 215 (452)
..+..++++.++.+.|.+...+..+.++++..++|++. +.+++.+.++++|.+++|.+++.+........... ...+
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~--~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAA--SRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHH--HHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 34678889999999999999999999999999999888 89999999999999999999887221100000000 0000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH-HhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHH
Q 012976 216 VDCANLKSAFFLDVIFIAITTCIS-ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVT 294 (452)
Q Consensus 216 ~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (452)
....+|++.|++.+.+..+..++. ....||.++++.+ +..++ + .. +.++.+++ |.++...+..
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~-----~~~~~-~---~~-----~~~~~~~~--~~~~l~~~~~ 149 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA-----RVSSG-D---TT-----QKTSAFQF--THLVLGALGI 149 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc-----ccccc-c---cc-----chhhHHhh--HHHHHHHHHH
Confidence 001278888886665544444333 2233432211110 00000 0 00 11223455 6677666666
Q ss_pred HHHHHhhHhHHHhhHHHHHhH-hhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHH
Q 012976 295 ALTWLGWFPFLLFDTDWMGRE-IYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMA 373 (452)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (452)
++...+..+...|.+.|+.+. .++.++ .........+..+..+++++.+++.||+|+|+.+.++..+.+
T Consensus 150 f~yvg~e~~~~~w~~~yl~~~~~~g~s~----------~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~ 219 (310)
T TIGR01272 150 FVYVGAEVSAGSFLVNFLSDPHALGLPE----------DQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV 219 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 666667778888899988532 122221 222344445677788999999999999999998888877776
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 374 LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
++.++....+ ... ......+.|++.+..++..+++..+..|++
T Consensus 220 ~~~~l~~~~~-----------------~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~ 262 (310)
T TIGR01272 220 LLSIGAALTH-----------------GYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH 262 (310)
T ss_pred HHHHHHHHcC-----------------CHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 6654443331 111 233555788999999999888888877764
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-15 Score=147.55 Aligned_cols=323 Identities=14% Similarity=0.138 Sum_probs=2.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAV 115 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~ 115 (452)
+++..+.+..........++.+.++++++.++.|++.+.+-++..+..++..++.+ | |+|+.++..+.++..++.
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~----~-~hrprwig~g~~~~~~g~ 82 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGG----R-GHRPRWIGIGALLMGLGS 82 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----h-cCCcceeeecHHHHHHHH
Confidence 33344444334445556677778999999999999999999999999999999999 7 456667777777777777
Q ss_pred HHHhccccccccc-CCC----------------------------------CCCCchhHHHHHHHHHHHHHhhhhcchhH
Q 012976 116 LLIGLSADIGWLL-GDR----------------------------------GDFRPRAIAVFVFGFWILDVANNMTQGPC 160 (452)
Q Consensus 116 ~~~~~~~~~~~~~-~~~----------------------------------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 160 (452)
++..+.+-....+ +.. +......+.+++++.++.|+|.+..++..
T Consensus 83 ~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG 162 (539)
T PF03137_consen 83 LLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLG 162 (539)
T ss_dssp ---------------------------------------------------------------------SSS--------
T ss_pred HHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccce
Confidence 6665544221100 000 11112245677888999999999999999
Q ss_pred HHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee-cccc------ccccccccccchhHHHHHHHHHHH
Q 012976 161 RALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI-LPFT------LTSACNVDCANLKSAFFLDVIFIA 233 (452)
Q Consensus 161 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~-~p~~------~~~~~~~~~~~~~~~f~~~~~~~~ 233 (452)
.+++-|.+++++-+ ...|+......+|..+|.++++....... .+.. .+...+.+.+.|...|++.+++.+
T Consensus 163 ~tYiDDnv~~~~sp--lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~ 240 (539)
T PF03137_consen 163 ITYIDDNVSKKNSP--LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLF 240 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeccccccccCc--cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 99999999999988 99999999999999999999987222110 1111 111112233467777888877777
Q ss_pred HHHHHHHhccccCCCCCCCC--CC----CCCc---ccccCc------cchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 012976 234 ITTCISASAAHEVPLGSHDQ--SA----PFSE---EGHEQS------SDVHEAFLWELFGTFRYFSGTIWIILIVTALTW 298 (452)
Q Consensus 234 ~~~~~~~~~~~e~~~~~~~~--~~----~~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (452)
+..+....+.++-|...+.+ ++ ++.+ ++.++. .+..++..+.++++++| +.+....+......
T Consensus 241 l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N--p~f~~~~la~~~~~ 318 (539)
T PF03137_consen 241 LSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN--PVFMCLILAGVFES 318 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence 77766666655544441110 00 0000 000000 01123445566778888 88888888888888
Q ss_pred HhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHH
Q 012976 299 LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALCF 376 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~ 376 (452)
+...++..|.|-|+. .-|+.++..+..+ .+. +...+.+++.+++|++.+|++ .|+.+....+...++.
T Consensus 319 ~~~~G~~tF~pKylE-~QF~~sas~A~~l--------~G~-v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~ 388 (539)
T PF03137_consen 319 FIVSGFATFLPKYLE-SQFGLSASQASLL--------TGI-VSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSV 388 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHhCCCHHHHHHH--------Hhh-hhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHH
Confidence 888899999999994 4455444333111 111 122345577789999999984 4555544444444433
Q ss_pred H
Q 012976 377 L 377 (452)
Q Consensus 377 ~ 377 (452)
+
T Consensus 389 ~ 389 (539)
T PF03137_consen 389 I 389 (539)
T ss_dssp -
T ss_pred H
Confidence 3
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-12 Score=123.99 Aligned_cols=323 Identities=12% Similarity=0.113 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
.++...+...+........+..+-+.++++.++.|++.+.+-++..+...+..+..- |..| .-++..+.+...++
T Consensus 101 ~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~----r~Hr-Pr~Ig~G~~~m~lg 175 (735)
T KOG3626|consen 101 LLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGS----RGHR-PRWIGIGLVLMGLG 175 (735)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcc----ccCc-cceeeechhHHHHH
Confidence 444555555555555556666777899999999999999999999999999999988 7544 44555566666666
Q ss_pred HHHHhccccc-ccc-----------------------------cCCC--C-----CCCchhHHHHHHHHHHHHHhhhhcc
Q 012976 115 VLLIGLSADI-GWL-----------------------------LGDR--G-----DFRPRAIAVFVFGFWILDVANNMTQ 157 (452)
Q Consensus 115 ~~~~~~~~~~-~~~-----------------------------~~~~--~-----~~~~~~~~~~~~~~~~~g~~~~~~~ 157 (452)
.++..+.+-. +.. .... + ......+.+++++.++.|+|....+
T Consensus 176 sll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~ 255 (735)
T KOG3626|consen 176 SLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIF 255 (735)
T ss_pred HHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCc
Confidence 5555554211 000 0000 0 1112244567788899999999999
Q ss_pred hhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee----ccccccccccccccchhHHHHHHHHHHH
Q 012976 158 GPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI----LPFTLTSACNVDCANLKSAFFLDVIFIA 233 (452)
Q Consensus 158 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~----~p~~~~~~~~~~~~~~~~~f~~~~~~~~ 233 (452)
+...+++-|...+++-. ...|+......+|.++|.+++++...... -|...+...+.+.+.|+..|++.+.+.+
T Consensus 256 tlGisYiDDnvk~~~Sp--lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~ 333 (735)
T KOG3626|consen 256 TLGISYIDDNVKKKNSP--LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLL 333 (735)
T ss_pred cCCCccccccccccCCc--HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHH
Confidence 99999999999999888 99999999999999999999988322111 1112222233344678888998888888
Q ss_pred HHHHHHHhccccCCCCCCC---CCCCCCccc------ccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhH
Q 012976 234 ITTCISASAAHEVPLGSHD---QSAPFSEEG------HEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPF 304 (452)
Q Consensus 234 ~~~~~~~~~~~e~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (452)
+..+..+++.++.|+...+ ++.+..+++ .....+..++..+.++++++| +.+...++...+....+.++
T Consensus 334 ~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N--~if~~~~l~~~~~~~~~~G~ 411 (735)
T KOG3626|consen 334 FSAVPLFFFPKELPKSQKRKRARDLHVLKTESGGAKSDKTFGKKIKDFPKSIKRLLSN--PIFMLVVLASVIESLAITGY 411 (735)
T ss_pred HHHHHHHhCcccCccccccchhhhhcccccccccccCCcchhhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHhhH
Confidence 8887777776666654321 110100111 111112234566677888888 89999999999999999999
Q ss_pred HHhhHHHHHhHhhCCCCCcccccccccchhhHHH-HHHHHHHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHH
Q 012976 305 LLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL-MLNSVVLGITSVLMEKLCRKWG--AGFIWGISNILMALCFL 377 (452)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~i~~~~~g~l~dr~g--~~~~~~~~~~~~~~~~~ 377 (452)
.+|.|-|+. ..|+.+...+ .+.. .+..-+.+++.+++|++.+|+. .|....+.++...++++
T Consensus 412 ~tFlPKyLE-~Qfg~sas~A----------n~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~ 476 (735)
T KOG3626|consen 412 ITFLPKYLE-TQFGISASLA----------NILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLL 476 (735)
T ss_pred HHhhHHHHH-HHcCCCHHHH----------HHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHH
Confidence 999999994 4455443332 1111 1122334566789999999984 34455444444444333
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-11 Score=112.77 Aligned_cols=180 Identities=19% Similarity=0.214 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC----CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELG----IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g----~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
.|.++.+...-+..-++++.....+..|+ .+++ ++++++.-+.+.+...--+...++||++|| -+|+||+++
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr---~LG~~~tI~ 96 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADR---VLGTRRTIV 96 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHH
Confidence 45667777778888899999988888887 5666 999999888888888888889999999994 469999888
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (452)
.+ .++..++.+++..... .....+.++..+..+|.|..-+...+++.|..|+++.+.-..+++..+
T Consensus 97 lG-ail~~iGh~~L~~~~~-------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~ 162 (498)
T COG3104 97 LG-AILMAIGHLVLAISSV-------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM 162 (498)
T ss_pred HH-HHHHHHHHHHHhcccc-------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence 84 4556666666655420 012355667777779999999999999999998755321158888889
Q ss_pred HHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 185 FMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
+.++|++++|.+.++..... +|+..|...++-..+..+..+.
T Consensus 163 ~iNiGsl~~p~i~~~~~~~~---------------g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 163 GINIGSLIAPIITGLLAINY---------------GWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred EeehHHHHHHHHHHHHHHhh---------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987733322 8999998887766655544443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=130.41 Aligned_cols=185 Identities=13% Similarity=0.121 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc--------hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYVQELGIPH--------AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+...........+.+.+.++.|.++ .+.+.+.++..+...++.++.|+++| |+|||+.++++ .+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~d----r~g~r~~l~~~-~~~~ 291 (418)
T TIGR00889 217 SMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLK----RFGIKKVMLLS-LVAW 291 (418)
T ss_pred HHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HHHH
Confidence 33333334445567788887777554 56688889999999999999999999 99999987774 4444
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH-HHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGN 190 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~ 190 (452)
.+...+...... .....+.+++...+.+++.+...+....++.|.+|+++|+ +++|+.+ ...++|.
T Consensus 292 ~v~~~l~~~~~~-----------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g--~~~g~~~~~~~~lg~ 358 (418)
T TIGR00889 292 ALRFGFFAYGDP-----------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA--SAQGLFTLMCNGFGS 358 (418)
T ss_pred HHHHHHHHHcCc-----------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHHhhHH
Confidence 444443333211 0112344556677788888877788889999999999999 9999997 6788999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (452)
.+|+.++|.+... .......+|+..|.+.+++.++..++.+++.||+.+..+
T Consensus 359 ~iGp~l~G~l~~~---------~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~ 410 (418)
T TIGR00889 359 LLGYILSGVMVEK---------MFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIK 410 (418)
T ss_pred HHHHHHHHHHHHH---------hccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence 9999999873221 100000169999998888888888888888887754433
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.8e-11 Score=105.79 Aligned_cols=283 Identities=13% Similarity=0.135 Sum_probs=163.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 43 IQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
...+...+.+|+-...++.|+++.+++.+........++..++.|.++| |+||||..++.+.+-...++. - ..+
T Consensus 46 a~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD----~~Grk~~cl~~cily~~scl~-k-~~~ 119 (354)
T PF05631_consen 46 AMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLAD----RYGRKKACLLFCILYSLSCLT-K-HSS 119 (354)
T ss_pred HHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCchHHHHHHHHHHHHHHHH-H-hcc
Confidence 3445566667776666899999999999999999999999999999999 999999888866655554432 1 122
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHH-hhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccc
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRAL-LADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG 201 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~ 201 (452)
.+..+++++++.|++.+....+.-++ +.|.-..+.+.. .....+.....+++.+-.+.+|.+
T Consensus 120 ---------------~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~-~L~~tF~~~tf~~n~~vAI~aGv~- 182 (354)
T PF05631_consen 120 ---------------NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE-WLSDTFSLATFFGNGVVAIGAGVV- 182 (354)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHhHHHHHHHhHH-
Confidence 24788899999999999888887665 455432221110 111222211112222222222220
Q ss_pred cceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHh
Q 012976 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFR 281 (452)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (452)
.+...+..+.+...+|.....+..+..++.....+|...+..++. +..+...+..+...+
T Consensus 183 --------a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~------------~~~~~~~~a~~~i~~ 242 (354)
T PF05631_consen 183 --------ANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSS------------SLSGSFREAWRAILS 242 (354)
T ss_pred --------HHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCccccc------------chHHHHHHHHHHHHc
Confidence 111111111244667877777777777766666777654432210 011222223334444
Q ss_pred cchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-hC
Q 012976 282 YFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WG 360 (452)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g 360 (452)
+ |+.+.+.++..+.-...+.+....++-+. . + +.....+.+ ...+.++.++|+.+..++..| ..
T Consensus 243 d--~ril~LG~~qslFE~smy~FVflWtPaL~----~-~-------~~~~P~GlI-FssFM~a~MlGS~lf~~l~s~~~~ 307 (354)
T PF05631_consen 243 D--PRILLLGLIQSLFEGSMYLFVFLWTPALD----P-D-------DEELPLGLI-FSSFMVAMMLGSSLFSRLLSKSLR 307 (354)
T ss_pred C--chhHHHHHHHHHHHHHHHHheeeeeceec----C-C-------CCCCCchHH-HHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5 78888888887777665555444444331 1 0 111122222 222566777888888665544 33
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH
Q 012976 361 AGFIWGISNILMALCFLAMLILY 383 (452)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~ 383 (452)
....+...+.+.++++....+.+
T Consensus 308 ~e~~l~~v~~~aa~~l~~pv~~~ 330 (354)
T PF05631_consen 308 PESLLRYVFAVAAVSLAIPVVTH 330 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666665555553
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=122.85 Aligned_cols=133 Identities=14% Similarity=0.119 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
........+.|.++++.|.++.+.+.+.+...++..++.++.|+++| |+|||+.+.. +.+...++.......++.
T Consensus 234 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~~ 308 (406)
T PRK11551 234 IVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMD----RLRPRRVVLL-IYAGILASLAALAAAPSF 308 (406)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHH-HHHHHHHHHHHHHhcCcH
Confidence 34455566788899889999999999999999999999999999999 9999887765 333334444433333221
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+.+.+...+.+++.+...+...++..|.+|+++|+ ++.|+.+....+|..+++.+++.
T Consensus 309 ---------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~ 366 (406)
T PRK11551 309 ---------------AGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRG--TGVGAAVAVGRLGSMAGPLLAGQ 366 (406)
T ss_pred ---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhh--hhhhHHHHhhhHHHHHHhhhHhh
Confidence 23334455566666666777889999999999999 99999999999999999999887
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=115.22 Aligned_cols=184 Identities=16% Similarity=0.074 Sum_probs=135.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+.+.+|.+++..+...+.-+....+.|.|+ |..|+|..++++..+.+-+++..+.+++||+|||.. -|||.+.-+..
T Consensus 250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklf--kgrR~p~~~i~ 327 (448)
T COG2271 250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLF--KGRRGPMALIF 327 (448)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ccccchHHHHH
Confidence 345577788888887778888889999998 788999999999999999999999999999999421 18998887777
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.+...+++......++. +.++..+..++.|+...+..-..-....|..|++.-| .+.|+.+.+..
T Consensus 328 ~~~i~~~~~~~w~~~~~-------------~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaG--tA~Gf~Glf~Y 392 (448)
T COG2271 328 MLLITASLVLYWLAPNG-------------SYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAG--TATGFVGLFAY 392 (448)
T ss_pred HHHHHHHHHHHHcCCCc-------------cHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhcc--chhchhhhHHH
Confidence 77777777777665432 2344445555555554444444566778999999999 89999999888
Q ss_pred H-HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 188 V-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 188 ~-g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
+ |...+....++ +.+. .||...|.+..+.+++..++......
T Consensus 393 l~Ga~~a~~~~g~---------i~d~------~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 393 LIGAALAGLPLGY---------IADT------WGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HhhHHhcCCccee---------eEec------CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8 77766655444 2222 28998888877666666555544443
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-11 Score=120.02 Aligned_cols=177 Identities=20% Similarity=0.205 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 41 GGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
+.....++....++|.++ +.+|.+..+.++......++..++.++.|+++| |+|||+.++.+.....+.+..+..
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~grr~~~~~~~~~~~~~~~~~~~ 335 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSD----RFGRRPFVILGSVALFVLAIPAFI 335 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHHHHHHHHHHHHHHH
Confidence 334456677778899988 567999888888877888888899999999999 999999776644433333332222
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
...+ .....+++++.+.+++.+...+....+++|.+|++.|+ .+.+.......+++.+++.+.++
T Consensus 336 ~~~~-------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg--~~~g~~~~~~~~~g~~~p~i~g~ 400 (490)
T PRK10642 336 LINS-------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRY--SALAAAFNISVLVAGLTPTLAAW 400 (490)
T ss_pred HHhC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 01234445566666666666667778889999999999 77776444444555666666554
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (452)
+.... .+|+..+++..+..++.. +..++.||+|+...
T Consensus 401 l~~~~--------------~~~~~~~~~~~~~~~i~~-~~~~~~pes~~~~~ 437 (490)
T PRK10642 401 LVEST--------------QNLMMPAYYLMVVAVIGL-ITGVTMKETANRPL 437 (490)
T ss_pred HHHHh--------------CCchHHHHHHHHHHHHHH-HHHHHhccccCCCC
Confidence 21100 145555554444444333 34455699877544
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.4e-11 Score=114.88 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
.++.+...+..+.....+.....++|+++++.|.+..+.+...+...++..++.++.|++.| |+|||+..+. +..
T Consensus 204 ~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~----r~~~~~~~~~-~~~ 278 (393)
T PRK09705 204 TPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMAR----HQDRRKLLML-ALV 278 (393)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHh----hccchHHHHH-HHH
Confidence 34445555555555566677778999999889999999999999999999999999999999 9999887766 334
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccC-ccccchhhhhhHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~ 188 (452)
....+..+....+.. . ... ...+.+++.+...+.......+..+ +++++ +..+..+....+
T Consensus 279 l~~~~~~~~~~~~~~-----------~---~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~ 340 (393)
T PRK09705 279 LQLVGFCGFIWLPLQ-----------L---PVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAG--KLVAFMQGIGFI 340 (393)
T ss_pred HHHHHHHHHHHccch-----------H---HHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHH
Confidence 444444333222110 0 111 1223456666666666666677775 56788 899999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (452)
+..++|.+.+++.... +++...|.+.++++++..+......||++.++
T Consensus 341 ~~~~gp~~~G~l~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 341 IAGLAPWFSGVLRSIS--------------GNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHh--------------CCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 9999998888733221 25777777777776666666666777765443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=116.89 Aligned_cols=169 Identities=12% Similarity=0.049 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 48 ALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 48 ~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.....+.|.+.++ +|.++.+.+++.+...++..++.++.+++.| |.++|+.+.. +.+...++.......++
T Consensus 240 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~----~~~~~~~l~~-~~~~~~~~~~~~~~~~~--- 311 (417)
T PRK10489 240 SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAH----SARPGLLMLL-STLGSFLAVGLFGLMPM--- 311 (417)
T ss_pred HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhh----ccCcchHHHH-HHHHHHHHHHHHHccch---
Confidence 3445677888866 8999999999999999999999999999999 8766666555 33444444444433322
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
.+...+...+.+++.+...+...+++.|..|++.|+ +++++.+....+|..+|+.+.|.+....
T Consensus 312 ------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~l~G~l~~~~-- 375 (417)
T PRK10489 312 ------------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLG--RINGLWTAQNVTGDAIGAALLGGLGAMM-- 375 (417)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHH--HHHHHHHHHHhhhHhHHHHHHHHHHHHh--
Confidence 234445566667777766667778999999999999 9999999999999999999988733221
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (452)
+.+..++..+++.++..++.....+|.++.+.++
T Consensus 376 -------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (417)
T PRK10489 376 -------------TPVASASASGFGLLIIGVLLLLVLGELRRFRQTP 409 (417)
T ss_pred -------------chhhHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 6677787777776666666667777766544443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-12 Score=119.43 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
+......+...+.......+.+++.+++|.++.+.+.+.+...+...++.++.|+++| |+|||+.+.+ +.+...+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~-~~~~~~~ 282 (377)
T TIGR00890 208 WVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSD----KIGRQKTMSI-VFGISAV 282 (377)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhhhhhH-HHHHHHH
Confidence 3333333333344444455667778889999999999999999999999999999999 9999987766 4444444
Q ss_pred HHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHH
Q 012976 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (452)
+.....+.++. ..........+.+++.+...+...+++.|.+|+++|+ ++.|+.+....+|..++
T Consensus 283 ~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~~ 347 (377)
T TIGR00890 283 GMAAMLFIPML-------------NDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSA--ANYGFLYTAKAVAGIFG 347 (377)
T ss_pred HHHHHHHcccc-------------hhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhh--hHhHHHHHHHHHHHHHH
Confidence 44444433221 1122223344556666666667788999999999999 99999999999999999
Q ss_pred HhhccccccceeccccccccccccccchhHHHHHHHHHHHHH
Q 012976 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAIT 235 (452)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (452)
+.+.+.+... .+|++.|.+.+++.++.
T Consensus 348 ~~~~g~l~~~---------------~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 348 GLIASHALTE---------------IGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHhh---------------hchhhHHHHHHHHHHHh
Confidence 9988773221 17888888776655443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-11 Score=120.49 Aligned_cols=172 Identities=15% Similarity=0.145 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHH-HHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIV-CGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~-~~~~~~ 111 (452)
++.+....+...+.+.....++++|.++.|.++.+.+++.++..++..+++++.|+++||.+ +++|+..++ .+.+..
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~ 320 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKW--IRPHVQYLFSFALLFN 320 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cCHHHHHHHHHHHHHH
Confidence 44444444444555556667889999889999999999999999999999999999999311 233333332 222222
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
..+.++....++ .+.+++...+.|++.+...+...+++.|.+|+++++ +..++.+...++|..
T Consensus 321 ~l~~ll~~~~~~---------------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~lg~~ 383 (455)
T TIGR00892 321 GLTHLLCALAGD---------------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFS--SAVGLVTIVECCAVL 383 (455)
T ss_pred HHHHHHHHHhch---------------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHh--hHHhHHHHHHHHHHH
Confidence 222333322222 244556677778888888888899999999999999 999999999999999
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC 237 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~ 237 (452)
+|+.+++.+.... ++|++.|++.+++.++..+
T Consensus 384 igp~i~G~l~~~~--------------g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 384 IGPPLAGRLVDAT--------------KNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred ccccceeeeehhc--------------CCcchHHHHhhHHHHHHHH
Confidence 9999988732211 2588888877665554433
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=119.34 Aligned_cols=186 Identities=15% Similarity=0.040 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+..+...+..+.....+.....++|.|+ +++|.+..+.++..+...++..++.+++|+++| |+|||+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD----r~g~r~~~~~~~~~ 333 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSD----LANGRRALVACIAL 333 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCCchHHHHHHH
Confidence 3455555555555555566778899988 668999999999999999999999999999999 99998876553322
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH-
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV- 188 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~- 188 (452)
.. ....+...... . ......+..++.|++.............|.+|++.|+ .+.|+.+...++
T Consensus 334 ~~-~~~~~~~~~~~----------~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g--~a~gi~~~~g~l~ 397 (467)
T PRK09556 334 AL-IIFTLGVYQHA----------T---SEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIG--VANGIKGTFAYLF 397 (467)
T ss_pred HH-HHHHHHHHHhc----------C---cHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH--HHHHHHHHHHHHH
Confidence 22 22211111110 0 1122333444444333222223345677999999999 999999988886
Q ss_pred HHHHHHhhccccccceecccccccc-ccccccchhHHHHHHHHHHHHHHHHHH
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSA-CNVDCANLKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (452)
|..+++.+.|.+..... .+.. ......+|+..|++..++.++..+..+
T Consensus 398 g~~~~~~~~G~i~~~~~----~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 398 GDSFAKVGLGMIADPTK----NGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHhhhHHHHhcccc----cccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 66888888777322000 0000 000013799999888666665544443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-12 Score=121.92 Aligned_cols=159 Identities=7% Similarity=-0.028 Sum_probs=113.1
Q ss_pred HHHHHHHH----HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 52 SLLTPYVQ----ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 52 ~~~~~~~~----~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
...|.+.. +.+.+..+.|.+.++..+...++.++.|+++| |+|||+.+.... +...+...+..+.++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~-~l~~~~~~l~~~~~~~--- 315 (420)
T PRK09528 244 QQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIIN----RIGAKNALLLAG-TIMAVRIIGSGFATGP--- 315 (420)
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcchhhHHHH-HHHHHHHHHHHhcccH---
Confidence 34555542 33667778899999999999999999999999 999999776644 4444455555544432
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HHHHHHHHHHHHHhhccccccceec
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
+.+.+...+.+++.+........++.|.+|++.|+ ...+. .+....+|..+++.+.|++....
T Consensus 316 ------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-- 379 (420)
T PRK09528 316 ------------LEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSA--TIYLVGFQFAKQLGAVFLSTLAGNLYDSI-- 379 (420)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccee--eeeeehHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 34445566667777666667778899999998888 66544 56778899999998887733221
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
||+..|...+++.++..++.++..++++
T Consensus 380 -------------G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 380 -------------GFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred -------------CchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 7999999888777766666666665544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.6e-11 Score=115.14 Aligned_cols=162 Identities=14% Similarity=0.123 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
.+.+.....+++.+.++.|.+ +.++..+...++..++.++.|++.| |+||||.+.. +......+.......++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~-~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 229 SIGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLIN----RLGGLRVAIV-SLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 445555667778887777763 4456666777888889999999999 9999887665 44444444444444333
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (452)
. +..++...+.|++.+...+.......|..|+++|+ ++.++.+....+|..+++.+.+.+...
T Consensus 302 ~---------------~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 302 P---------------WMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRG--AALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred H---------------HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455667778888777777777888999999999 999999999999998888777663221
Q ss_pred eeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
.+|+..|++.+++.++..++..+..+
T Consensus 365 ---------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 365 ---------------FGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred ---------------cCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 17899998887776666555554433
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6e-11 Score=113.30 Aligned_cols=161 Identities=15% Similarity=0.155 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
.+.....+.|.|. +++|.++.+.+++.+...+...++.++.|+++| |+|||+.+.. +....+.........++
T Consensus 231 ~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~d----r~g~~~~~~~-~~~~~~~~~~~~~~~~~- 304 (393)
T PRK15011 231 TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAK----RLGKRFLMRV-AAVAGVCFYAGMLMAHS- 304 (393)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHH-HHHHHHHHHHHHHHHhh-
Confidence 3444556788777 678999999999888777777888999999999 9999987655 33333333332222222
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
.+..++.+.+.+++.+...+....+..|..|+ +|+ ++.+..+...++|..+++.+++.+....
T Consensus 305 --------------~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g--~~~~~~~~~~~lg~~~g~~l~G~i~~~~ 367 (393)
T PRK15011 305 --------------PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-QAG--SATTLYTNTSRVGWIIAGSLAGIVAEIW 367 (393)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 13333444445555555555666778899885 588 8999998889999999999988732221
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e 245 (452)
+|+..|.+.+++.++..+ ..++.||
T Consensus 368 ---------------g~~~~~~~~~~~~~~~~~-~~~~~~~ 392 (393)
T PRK15011 368 ---------------NYHAVFWFALVMIIATLF-CLLRIKD 392 (393)
T ss_pred ---------------hhHHHHHHHHHHHHHHHH-HHHhhcC
Confidence 788888877666655444 4444454
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.30 E-value=1e-11 Score=99.79 Aligned_cols=137 Identities=23% Similarity=0.336 Sum_probs=103.7
Q ss_pred HhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHH
Q 012976 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (452)
Q Consensus 72 ~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (452)
.+...++..++.++.|++.| |+|||+.++... .....+.......++ .+...+...+.++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d----~~g~~~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~~~~~~~g~ 63 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTD----RFGRKPVLLVGL-FIFVLSTAMFALSSN---------------ITVLIIARFLQGF 63 (141)
T ss_pred EEeehhHHHHHHhhHHHHHh----hcchhHHHHHHH-HHHHHHHHHHHHhcc---------------HHHHHHHHHHHHH
Confidence 34566778889999999999 999999877644 334444444444333 2555667778888
Q ss_pred hhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHH
Q 012976 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIF 231 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~ 231 (452)
+.+...+...+++.|.+|+++|+ +..+..+....+|..+++.+.+..... .+|++.+++.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~ 126 (141)
T TIGR00880 64 GAAFALVAGAALIADIYPPEERG--VALGLMSAGIALGPLLGPPLGGVLAQF---------------LGWRAPFLFLAIL 126 (141)
T ss_pred HHHHHHHhHHHHHHHHCChhhhh--HHHHHHHHhHHHHHHHhHHhHHHHhcc---------------cchHHHHHHHHHH
Confidence 88888888999999999999999 999999999999999999888773221 2788888888777
Q ss_pred HHHHHHHHHhcccc
Q 012976 232 IAITTCISASAAHE 245 (452)
Q Consensus 232 ~~~~~~~~~~~~~e 245 (452)
.++..+...+..||
T Consensus 127 ~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 127 ALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHhhcCCC
Confidence 76666666666554
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.8e-11 Score=120.34 Aligned_cols=140 Identities=10% Similarity=0.096 Sum_probs=98.5
Q ss_pred HHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHH
Q 012976 70 IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149 (452)
Q Consensus 70 ~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (452)
+...+..++..++.++.|+++| |+|||+++++ +.++.+++.++..+.++. ..+++..++.
T Consensus 599 ~~~~l~~l~~i~G~il~g~L~D----r~GRr~~l~~-~~~lsai~~ll~~~~~s~---------------~~ll~~~~l~ 658 (742)
T TIGR01299 599 FVNFLGTLAVLPGNIVSALLMD----KIGRLRMLAG-SMVLSCISCFFLSFGNSE---------------SAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HhCCHHHHHH-HHHHHHHHHHHHHHHccH---------------HHHHHHHHHH
Confidence 3345666788899999999999 9999998766 444455444444444332 2334445566
Q ss_pred HHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHH
Q 012976 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDV 229 (452)
Q Consensus 150 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~ 229 (452)
+++.+..++...++++|++|.+.|+ +++|+.+....+|.++||.+++.+.. .+....|++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~Rg--ta~Gi~~~~~rlGaiigp~i~g~L~~----------------~~~~~pf~i~a 720 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDKRA--TAFGFLNALCKAAAVLGILIFGSFVG----------------ITKAAPILFAS 720 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----------------hhhHHHHHHHH
Confidence 6666677788899999999999999 99999999999999999999875211 03344566666
Q ss_pred HHHHHHHHHHHhccccCCC
Q 012976 230 IFIAITTCISASAAHEVPL 248 (452)
Q Consensus 230 ~~~~~~~~~~~~~~~e~~~ 248 (452)
++.++.+++.+ ++||++.
T Consensus 721 ~~lll~~ll~~-~LPET~~ 738 (742)
T TIGR01299 721 AALACGGLLAL-KLPDTRG 738 (742)
T ss_pred HHHHHHHHHHH-hCCCCcc
Confidence 66555544444 5587654
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=113.35 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
++.+......+...........+.|.++ +++|.++.+.+++.+...+...++.++.|+++| |+|||+..+.....
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~~ 290 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSD----LLLRRGKSLVFARK 290 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHhhcccchhHHHH
Confidence 4455555566666667777778888887 668999999999999999999999999999999 99888622211111
Q ss_pred HHHHH---HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 110 SIAVA---VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 110 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
....+ ........+. ....+.......+...+.+ ..+...+++.|.+|+++|+ ++.++.+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ 356 (399)
T TIGR00893 291 TAIIAGLVLSLLMFATNY-----------VNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAG--LTGGLINSLG 356 (399)
T ss_pred HHHHHHHHHHHHHHHhcc-----------chhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHH--HHHHHHHHHH
Confidence 11111 1111111110 0111222222222223333 5678899999999999999 9999999999
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccc-hhHHHHHHHHHHHHHHHHHH
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~ 240 (452)
.+|..+++.+.+.+.... + |+..|.+.+++.++..+..+
T Consensus 357 ~~g~~~~~~i~g~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 357 NLGGIVGPIVIGAIAATT---------------GSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHhhhhhhHHhhhhccCC---------------CchhHHHHHHHHHHHHHHHHHH
Confidence 999999998887733221 4 88888877766665554443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=112.90 Aligned_cols=182 Identities=15% Similarity=0.039 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCC--CCcchhHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCGA 108 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~--Grr~~~i~~~~ 108 (452)
+.+......+...........++|.|+ ++.|.+..+.+...++..++..++.++.|+++| |+ ++|+.......
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~r~~~~~~~~ 319 (434)
T PRK11663 244 YIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSD----KLFNGNRGPMNLIFA 319 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHH----HhccCCccHHHHHHH
Confidence 344444444444455556667889998 678999999999999999999999999999999 76 33333322111
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
+............+.. . ...........+++.............|.+|+++|+ .+.|+.+....+
T Consensus 320 ~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~ 384 (434)
T PRK11663 320 AGILLSVGSLWLMPFA-----------S--YVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAG--AATGFVGLFAYL 384 (434)
T ss_pred HHHHHHHHHHHHcccc-----------c--HHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHH--hHHHHHHHHHHH
Confidence 1111111111111110 0 111112222223222211222345678999999999 999999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
|..++|.+.+.+.... +|+..|...+++.++..+..+...++++
T Consensus 385 g~~~~p~~~g~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 385 GAALSGYPLAKVLEIW---------------HWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HHHHhcccHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999988877632221 7888998888887777666665555443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-11 Score=113.32 Aligned_cols=178 Identities=16% Similarity=0.110 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
++.+......+...........+.|.|.+++|.+..+.+.+.+...++..++.++.|+++| |+|||+.....+.+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~~~~~~~l~ 297 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGD----KLGWMNTVRWFGGVG 297 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----hhcchhHHHHHHHHH
Confidence 3444444445555556666677889999889999999999988889999999999999999 999888764322222
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
..+........+.. . ....+...+...+.+++.+.. .+..+...|..| ++|+ ++.|+.+....+|.
T Consensus 298 ~~~~~~~l~~~~~~--------~--~~~~~~~~~~~~~~G~~~~~~-~~~~~~~~~~~~-~~~g--~~~g~~~~~~~lg~ 363 (402)
T TIGR00897 298 CGIFTLALYYIPQH--------F--GHSFAVALIIAIALGIFLAGY-VPLAAVFPTLAP-KHKG--AAMSVLNLSAGLSA 363 (402)
T ss_pred HHHHHHHHHHHHHc--------c--CCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhCc-chhH--HHHHHHHHHHHHHH
Confidence 22221121111110 0 011233344455556655554 334556677655 6899 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
.++|.+++.+.... +++..+++.+++.++..++..+
T Consensus 364 ~~gp~i~g~l~~~~---------------g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 364 FLAPAIAVLFIGFF---------------GAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHhhc---------------chHHHHHHHHHHHHHHHHHHHH
Confidence 99999887733222 7888888887776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=3e-11 Score=115.31 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+......+...........+.|.+. +++|.++.+.+.+.....+...++.++.|+++| |+|||+.++..+.+..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSD----RIGRRPVLIIFTVLAA 296 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHH
Confidence 44444444555556666777888888 778999999999999999999999999999999 9999987765444443
Q ss_pred HHHHHHH-hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HHHHHHHH
Q 012976 112 AVAVLLI-GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVG 189 (452)
Q Consensus 112 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g 189 (452)
..+.... ....+ ...+.......+.+++.+...++..+++.|.+|+++|+ ++.++ .+....+|
T Consensus 297 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~g 361 (394)
T TIGR00883 297 LLAVPLLMALLDS-------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRY--TGASLAYNLAGAIF 361 (394)
T ss_pred HHHHHHHHHHhcC-------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCcccee--eEeeehhHhHHHHH
Confidence 3332221 11110 01234445556667777777888899999999999999 88887 45556778
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..++|.+++.
T Consensus 362 ~~~~p~~~g~ 371 (394)
T TIGR00883 362 GGFAPYIAAA 371 (394)
T ss_pred hhHHHHHHHH
Confidence 8888888877
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.8e-11 Score=112.03 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=119.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+.++.+......+..+........+.|+++++.|.++.+.|.+.++..+...+..++.+++.| |+|+|+.+++ +.
T Consensus 203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~----r~g~~~~l~~-~~ 277 (382)
T TIGR00902 203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQ----NCSARDLLLI-SA 277 (382)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHh----hCCHHHHHHH-HH
Confidence 344555555555666667777778999999889999999999999988888999999999999 9999887665 56
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH-HHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMA 187 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~ 187 (452)
+...+......+.++. +.++....+.++..+...+....++.+. |+++|+ ...++.+ ...+
T Consensus 278 ~~~~~~~~~~~~~~~~---------------~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~--~~q~~~~~~~~g 339 (382)
T TIGR00902 278 IACVGRWAIIGAIEAF---------------PLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIA--KLQALYNALAMG 339 (382)
T ss_pred HHHHHHHHHHHhHhhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHH--HHHHHHHHHHHH
Confidence 6666666666555443 5666678888999999999999999988 888888 8888876 5678
Q ss_pred HHHHHHHhhcccc
Q 012976 188 VGNILGYATGSFS 200 (452)
Q Consensus 188 ~g~~ig~~~~~~~ 200 (452)
+|..+|+.++|.+
T Consensus 340 ~g~~~g~~~~G~l 352 (382)
T TIGR00902 340 GLIAIFTAFAGFI 352 (382)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998883
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.4e-11 Score=113.00 Aligned_cols=165 Identities=18% Similarity=0.202 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCch----hhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 44 QFGWALQLSLLTPYVQELGIPHA----WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~----~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
........++.+.|.++.+.+.. ..+.+.++..++..++.++.|+++| |+|||+.++... ....+......
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~d----r~g~~~~~~~~~-~~~~~~~~~~~ 306 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGD----RIGPEKILITAL-IFSVLLLIPMS 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchhHHHHH-HHHHHHHHHHH
Confidence 33444555677777765543333 2455666677788888999999999 999998777643 33333333333
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+.++ .+...+...+.+++.+...+...+.+.+..|+++|+ +.++..+....+|..+|+.+++.
T Consensus 307 ~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~~gp~~~G~ 369 (408)
T PRK09874 307 FVQT---------------PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAG--RIFSYNQSFRDIGNVTGPLMGAA 369 (408)
T ss_pred Hhcc---------------HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccce--eeehHHHHHHHHHHHhhHHHHHH
Confidence 3322 244555666778888888888888889999999999 99999999999999999999887
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e 245 (452)
+.... +|++.|.+.+++.++..++.++..++
T Consensus 370 l~~~~---------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 370 ISANY---------------GFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred HHhhc---------------chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 78999998887777766666554443
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.7e-11 Score=112.54 Aligned_cols=192 Identities=16% Similarity=0.059 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
..+......+++++ +......|...+.++.|++..++.++.....+...+...++.++.| |.|||+.++.+..+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid----~~gRRpLll~~~~~~ 345 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLID----RLGRRPLLLISLSLM 345 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcHHHHHHHHHH
Confidence 34445555666666 5566677788888999999999999999999999999999999999 999998877755554
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcc-hhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQ-GPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
.+..+++.....-.. ....+..+..++..++..+.++... |..+-+.+|.+|++.|. .++++......+.
T Consensus 346 ~~~~~~~~~~~~l~~-------~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~--aa~s~~~~~~w~~ 416 (485)
T KOG0569|consen 346 AVALLLMSIALFLSN-------SFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARS--AAQSVATAVNWLS 416 (485)
T ss_pred HHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchH--HHHHHHHHHHHHH
Confidence 444433332221110 0001111222344444445555443 44678899999999999 8899888888888
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHD 252 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~ 252 (452)
+.+-... +|.+.+.. |- ..|.+..+.+.+..+..++.+||++.+...
T Consensus 417 ~fiv~~~---------fp~l~~~~------g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~ 463 (485)
T KOG0569|consen 417 NFIVGFA---------FPPLQNVI------GP-YVFILFVIPLAIFLIYLYRYLPETKGRTPY 463 (485)
T ss_pred HHHHHHH---------HHHHHHHh------cc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHH
Confidence 8766544 34343332 22 567777788888889999999999876543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.8e-11 Score=113.93 Aligned_cols=177 Identities=15% Similarity=0.053 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCC--CCcchhHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVCG 107 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~--Grr~~~i~~~ 107 (452)
+.++...+..+......+....++|.|+++ .|.+..+.+++..+..++..++.++.|+++| |+ |||+...+..
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~d----r~~~~r~~~~~~~~ 328 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVFF 328 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHccCCcchHHHHH
Confidence 334444455555455556667799999854 7999999999888888888999999999999 87 4454332222
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.....++.......+.. ..+...+...+.+.+.........++..|.+|+++|+ ++.|+.+....
T Consensus 329 ~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~ 393 (452)
T PRK11273 329 MTLVTIATIVYWLNPAG-------------NPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGY 393 (452)
T ss_pred HHHHHHHHHHHHHhccc-------------ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhh--hHHHHHHHHHH
Confidence 22222222222221110 0112222233333322222223345678999999999 99999988888
Q ss_pred HHHHH-HHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 188 VGNIL-GYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 188 ~g~~i-g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
+|+.+ ++.+.+.+.... +|+..|++.++++++.++....
T Consensus 394 ~g~~~~g~~v~g~l~~~~---------------g~~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 394 LGGSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred HHHHHhhhhhHHHHHHHh---------------cchHHHHHHHHHHHHHHHHHHH
Confidence 87654 677766622211 7888898877766666555443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=110.58 Aligned_cols=171 Identities=13% Similarity=0.025 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+.+......+...........++|.|+ +++|.++.+.+.+.+.+.++..++.++.|+++| |++||+.++.... .
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~l~~~~~-~ 280 (394)
T PRK03699 206 GVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVR----FFDLQRILTVLAG-L 280 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHH----HhchhhHHHHHHH-H
Confidence 344444444444455566678999998 668999999999999999999999999999999 9999987766443 3
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
......+....++. ....+...+.|++.+...+...+...|..| ++++ +..+.......+|.
T Consensus 281 ~~~~~~~~~~~~~~---------------~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~ 342 (394)
T PRK03699 281 ALVLMYLFVNTDDP---------------SHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASP--KLVNFILTCGTIGT 342 (394)
T ss_pred HHHHHHHHHHcCCc---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCH--HHHHHHHHhhhHHH
Confidence 33333333333222 223334455666666666777777778776 4456 67788888888999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (452)
.++|.+.+++.... +++..++..+++..+..+.+.
T Consensus 343 ~i~p~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 343 MLTFVVTSPIVAHF---------------GLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred HHHHHHHHHHHHHh---------------CchhhhhhhHHHHHHHHHHHH
Confidence 99999887733221 778888877766655544433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.2e-10 Score=106.71 Aligned_cols=296 Identities=16% Similarity=0.094 Sum_probs=171.2
Q ss_pred hhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhh
Q 012976 76 PVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNM 155 (452)
Q Consensus 76 ~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 155 (452)
.+...+.++..|.++| |+|||.++.. ..+...+......+.. +++++ ..-...+...
T Consensus 72 ~~~~~i~s~~iG~lSD----~~grk~~L~~-~~~~~~l~~~~~~~~~-----------------~~~~~-~~~l~g~~~~ 128 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSD----RYGRKVVLLL-PLFGTILPALCLLFQG-----------------YWFFL-LLGLSGGFSA 128 (463)
T ss_pred HHHHHHHHhhhHHhhh----hhhhhhhHHH-HHHHHHHhHHHHHHHH-----------------HHHhh-hcccccchhh
Confidence 5677899999999999 9999987766 4455555544443321 11212 1111133445
Q ss_pred cchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHH
Q 012976 156 TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAIT 235 (452)
Q Consensus 156 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (452)
......++++|....++|. ...|+.+.....+..++|.+++..... .+....|++..+..++.
T Consensus 129 ~~s~~~a~vadis~~~~R~--~~~gll~~~~~~~~~~~p~~~~~~~~~---------------~~~a~~f~ia~~~~~~~ 191 (463)
T KOG2816|consen 129 IFSVGFAYVADISSEEERS--SSIGLLSGTFGAGLVIGPALGGYLVKF---------------LGIALVFLIAAASGILS 191 (463)
T ss_pred hhhhhhhheeeccchhHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHh---------------cCchHHHHHHHHHHHHH
Confidence 5667889999999999999 999999999999999999998773221 16777888888888888
Q ss_pred HHHHHhccccCCCCCCCCC-CCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-hHhHHHhhHHHHH
Q 012976 236 TCISASAAHEVPLGSHDQS-APFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLG-WFPFLLFDTDWMG 313 (452)
Q Consensus 236 ~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 313 (452)
.+...+++||+..+++++. .....+..........+..+...+ .+. .|..+.++...++.... .....-..+.|+
T Consensus 192 ~~y~~~~l~Esl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl- 268 (463)
T KOG2816|consen 192 LLYMLLFLPESLQEKERSDATLRELTPGSLDSSHVADAFQSLTK-VGP-DRLLLLLLLVAFLSSLPEAGGASDVLLLYL- 268 (463)
T ss_pred HHHHhhccccccCccccccccccccCCCcccchhhhhhhhhhcc-cCC-CccchHHHHHHHHHHHHHhcCceeEEEEEE-
Confidence 8889999999876655442 111100011101111222222222 222 13444433333322211 100000011111
Q ss_pred hHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHH-HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 012976 314 REIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSV-LMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR 392 (452)
Q Consensus 314 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (452)
...|+.++. .-.......+....++.+ ..+.+...+|.|+++..|+....+......+.+
T Consensus 269 ~~~f~w~~~----------~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~--------- 329 (463)
T KOG2816|consen 269 KAKFGWNKK----------EFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFAT--------- 329 (463)
T ss_pred eeecCcCHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhc---------
Confidence 111221111 111112234555566665 445888888999999999999999998888885
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeee
Q 012976 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYG 444 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~ 444 (452)
+.|..+....+ ........+...+.++...+++++| ..+++
T Consensus 330 --------~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g--~v~~~ 370 (463)
T KOG2816|consen 330 --------ETWMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQG--KVFGI 370 (463)
T ss_pred --------cchhhhHHHHH-HHhhcchhHHHHhHHHhhccccccc--chhhH
Confidence 33333333222 2233345556668888888888864 44443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-10 Score=109.83 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
.........+.+.+.++.|.+. .+.......++..+++++.|++.| |+||||.+... .....++..+....++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~-~~~~~~~~~~~~~~~~ 301 (392)
T PRK12382 229 GVGFAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPD----RFGGVKVAIVS-LLVETVGLLLLWLAPT 301 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHH----hcCCCeehHHH-HHHHHHHHHHHHHccc
Confidence 3445555677788887777654 455566677777889999999999 99999887764 4444444444444332
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (452)
. +...+...+.+++.+...+...+...|..|+++|+ ++.++.+....+|..+++.+.+.+...
T Consensus 302 ~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~ig~~~~g~l~~~ 364 (392)
T PRK12382 302 A---------------WVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRG--TALGGYAAFQDIAYGVSGPLAGMLATS 364 (392)
T ss_pred H---------------HHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455666777777777777788889999999999 999999999999999999888773222
Q ss_pred eeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 012976 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (452)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (452)
.+|+..|.+.+++.++..++.++..
T Consensus 365 ---------------~g~~~~~~~~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 365 ---------------FGYPSVFLAGAISAVLGIIVTILSF 389 (392)
T ss_pred ---------------hCchHHHHHHHHHHHHHHHHHHhhc
Confidence 1899999988877766665555443
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-09 Score=102.29 Aligned_cols=207 Identities=18% Similarity=0.244 Sum_probs=129.0
Q ss_pred HHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCC-CcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 012976 54 LTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (452)
Q Consensus 54 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~G-rr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (452)
.+.+.+++|+++.+...+.+...+... ..|+.|.++|... -+| |||++++.+.++..++...+...+..
T Consensus 13 ~~~l~~~l~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~p-i~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~-------- 82 (433)
T PF03092_consen 13 YPFLKDDLGLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFP-IFGYRRKPYMIIGWLLGAVSALVLALLPAS-------- 82 (433)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCchH-HhhhHHhhccccc-ccCCcchHHHHHHHHHHHHHHHHHHhcccc--------
Confidence 344458899999999888777766544 5789999999433 224 77787776776665555554443321
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc--cchhhhhhHHHHHHHHHHHHHHhhccccccceeccccc
Q 012976 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH--RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTL 210 (452)
Q Consensus 133 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~ 210 (452)
........+..++..+|.........++..|...++. |+ ...+.......+|.+++..++|......
T Consensus 83 ---~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g--~lqS~~~~~~~~G~lv~~~l~G~l~~~~------ 151 (433)
T PF03092_consen 83 ---ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRG--DLQSFVWGVRSVGSLVGSLLSGPLLDSF------ 151 (433)
T ss_pred ---cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhH--HHHHHHHHHHHHHHHHHHHhhhhhhhcC------
Confidence 1122333445556678888889999999999885433 45 7788888889999999988887732221
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHH
Q 012976 211 TSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWII 290 (452)
Q Consensus 211 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (452)
+++..|.+.+++..+..+...+..+|++..+..+.....+++........++..+++++.+++ +..+..
T Consensus 152 ---------~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~i~~~ 220 (433)
T PF03092_consen 152 ---------GPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQ--RAIWQP 220 (433)
T ss_pred ---------CCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhh--hHHHHH
Confidence 667778877777666666666666663322222111111110111111134455667777777 666665
Q ss_pred HH
Q 012976 291 LI 292 (452)
Q Consensus 291 ~~ 292 (452)
.+
T Consensus 221 ~~ 222 (433)
T PF03092_consen 221 IL 222 (433)
T ss_pred HH
Confidence 54
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=108.03 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
.......+++++. ++.|.++.+.+++.+...++..++.++.|+++| |+|||+. +....+.......+....++
T Consensus 220 ~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~~-~~~~~~~~~~~~~l~~~~~~- 293 (390)
T PRK03545 220 AHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGN----RHPSGFL-LIAIALLLVCLLLLLPAANS- 293 (390)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHH-HHHHHHHHHHHHHHHHHhch-
Confidence 3333445677776 457999999999999999999999999999999 9988754 33233322222222222222
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
.+.+.+...+.|++.....+...+.+.|..| ++|+ ++++..+....+|..+|+.++|.+....
T Consensus 294 --------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~--~~~g~~~~~~~~g~~~G~~~~G~~~~~~ 356 (390)
T PRK03545 294 --------------EWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATD--VAMALFSGIFNIGIGAGALLGNQVSLHL 356 (390)
T ss_pred --------------HHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2344455666667666555666777788766 5788 8999999999999999999988733322
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
+++..|+..+.+.++..++.....+
T Consensus 357 ---------------g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 ---------------GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ---------------ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 8888998888777776666666554
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-11 Score=115.17 Aligned_cols=172 Identities=9% Similarity=-0.008 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc-cccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA-DIGW 126 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~-~~~~ 126 (452)
.....+.|.+.++.|.+..+.++......++..++.++.|+++| |+|||+.+++. .+...++........ ....
T Consensus 301 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 375 (481)
T TIGR00879 301 NAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVD----RFGRRPLLLIG-AAGMAICLFVLGILGASFVT 375 (481)
T ss_pred eehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHH-HHHHHHHHHHHHHHhhcccC
Confidence 34456677778899999988888888888999999999999999 99999887764 333444433333110 0000
Q ss_pred ccCCCCCC-CchhHHHHHHHHHHHHHhhhh-cchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 127 LLGDRGDF-RPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 127 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
.. ....... +....+...+.+. ..+...+++.|.+|+++|+ +++++.+...++|..+++.+.+.....
T Consensus 376 ------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~~~~lg~~i~~~~~~~~~~~- 445 (481)
T TIGR00879 376 ------GSSKSSGNVA-IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRP--KGISIAVAANWLANFIVGFLFPTMLES- 445 (481)
T ss_pred ------CcccchhHHH-HHHHHHHHHHHHccccCeehhhhhccCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00 0001111 1222222222222 2345567789999999999 999999999999999999887652211
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCC
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (452)
.+|++.|++.++++++..++..++.||+++
T Consensus 446 --------------~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 446 --------------IGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred --------------cCccceehhHHHHHHHHHHHHheecccCCC
Confidence 178888888887777777777777777553
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.3e-10 Score=107.33 Aligned_cols=163 Identities=23% Similarity=0.347 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcc-hhHHHHHHHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYVQEL-GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRR-PFIVCGAISIAVAVLL 117 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~-~~i~~~~~~~~~~~~~ 117 (452)
.+...........+.+.+.++. |.++.+.+...+...++..++.++.|+++| |+|||+ .+.. +.....++...
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~~ 258 (352)
T cd06174 184 FFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSD----RLGRRRLLLLI-GLLLAALGLLL 258 (352)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHH-HHHHHHHHHHH
Confidence 3333445555667777787554 999999999999999999999999999999 999998 6666 44445555555
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
....++ .+...+...+.+++.+...+...+++.|..|+++|+ +.++..+....+|..+++.+.
T Consensus 259 ~~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~i~ 321 (352)
T cd06174 259 LALAPS---------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEARG--TASGLFNTFGSLGGALGPLLA 321 (352)
T ss_pred HHHhcc---------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 444332 255667777888999999999999999999999999 999999999999999999998
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
+..... .+|+..+.+.+++.++..++.
T Consensus 322 g~l~~~---------------~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 322 GLLLDT---------------GGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHhcc---------------cCcchHHHHHHHHHHHHHHHh
Confidence 773221 288888888877776665543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-10 Score=107.66 Aligned_cols=154 Identities=14% Similarity=0.197 Sum_probs=108.1
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 48 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.....+.|.++ +++|.++.+.+++.........++.++.|+++| |+|||+.+... .+............++
T Consensus 216 ~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~-~~~~~~~~~~~~~~~~--- 287 (375)
T TIGR00899 216 ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIK----RFGKRRLMLLA-ALAGVAFYTGLAADNS--- 287 (375)
T ss_pred HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchhHHHHH-HHHHHHHHHHHHHHHH---
Confidence 34445667776 778999999998888777777788899999999 99999877663 3333333333222222
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
.+...+...+.+++.+...+....+..|..|+ +++ +++++.+....+|..+++.+++.+....
T Consensus 288 ------------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~g~~~g~~~~g~~~~~~-- 350 (375)
T TIGR00899 288 ------------LWALLMLQLLNAIFIGILAGIGMLYFQDLMPG-RAG--AATTLYTNTGRVGWIIAGSVGGILAERW-- 350 (375)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 23444455566777777777777888898875 567 7899999999999999998887732221
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
+|+..|++.+++.++..++.
T Consensus 351 -------------g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 351 -------------SYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred -------------cchhHHHHHHHHHHHHHHHH
Confidence 78888888776665554443
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.1e-10 Score=112.08 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=93.2
Q ss_pred HHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 012976 50 QLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (452)
Q Consensus 50 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
...++|.|+ +++|.+..+.+++.+...++..++.++.|+++| |+|||+.++....+ ..+.........+
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~d----r~g~~~~~~~~~~~-~~~~~~~~~~~~~----- 363 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGD----WLGTRKAYVCSLLI-SQLLIIPVFAIGG----- 363 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHH-HHHHHHHHhhccc-----
Confidence 446788888 589999999999999999999999999999999 99999887664333 3332222221111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
...+......++.+.......+...+++.|.+|+++|+ +++++......+|..+|+.+++.+
T Consensus 364 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~lgp~l~g~l 425 (496)
T PRK03893 364 --------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRA--AGLGFTYNVGALGGALAPILGALI 425 (496)
T ss_pred --------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhh--cccchhhhhhhHHHHHHHHHHHHH
Confidence 11122222222222222233456677899999999999 999999999999999999988873
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.4e-10 Score=107.66 Aligned_cols=151 Identities=17% Similarity=0.136 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
.......++|.|.++.|.++.+.+.+.+...+...+++++.|+++| |+|+|+.+... .....++..... ..
T Consensus 215 ~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~~~~~~l~~~-~~~~~~~~~~~~--~~-- 285 (381)
T PRK03633 215 VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLAD----RFGRLLVLRVQ-VFVVILGSIAML--SQ-- 285 (381)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH----HcCcHHHHHHH-HHHHHHHHHHHh--hh--
Confidence 4445556789899889999999999999999999999999999999 99998876653 333333333221 11
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
........+.+++.....+...+.+.|..|+++++ ...+..+...++|..+||.+++++....
T Consensus 286 --------------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~lG~~igp~~~G~l~~~~- 348 (381)
T PRK03633 286 --------------AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELV--AMNQALLLSYTVGSLLGPSFTAMLMQNY- 348 (381)
T ss_pred --------------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 11122334445555556677888889999888877 6777788889999999999988733222
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHH
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITT 236 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 236 (452)
++++.|.+.+.+.++..
T Consensus 349 --------------g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 349 --------------SDNLLFIMIASVSFIYL 365 (381)
T ss_pred --------------CccHHHHHHHHHHHHHH
Confidence 77888887766665443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-10 Score=108.11 Aligned_cols=175 Identities=14% Similarity=0.101 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
.+...+..+....+.|.|. +++|.+......+..+..+...++.++.|+++| |+||||.++.... ..+++....
T Consensus 259 ~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~D----r~grr~~~~~~~~-~~~~~~~~~ 333 (438)
T PRK09952 259 RLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLAD----RFGRRRVYITGAL-IGTLSAFPF 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHH-HHHHHHHHH
Confidence 3444455666677888887 678988876665555666777888899999999 9999987766433 333322222
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH-HHHHHHHHHHHhhc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGNILGYATG 197 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~~ig~~~~ 197 (452)
..... . ....+..++...+.+++.+...+..+++++|.+|.+.|+ .+.++.. .+..+|+.++|.+.
T Consensus 334 ~~~~~---------~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~--tg~g~~~~~~~~lgg~~~p~i~ 400 (438)
T PRK09952 334 FMALE---------A--QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRY--SGAGVGYQVASVVGGGFTPFIA 400 (438)
T ss_pred HHHHH---------c--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhH--HHHhHHHHHHHHHHHHHHHHHH
Confidence 11100 0 001123333444556666766777889999999999998 6666643 34457777777776
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccC
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (452)
+++.. ...++|+..+.+.+++.++..+.. +.++|+
T Consensus 401 g~l~~-------------~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 401 AALVT-------------YFGGSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred HHHHH-------------hcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 65211 011257777776665555544443 445653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.3e-10 Score=104.16 Aligned_cols=184 Identities=18% Similarity=0.186 Sum_probs=128.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHH
Q 012976 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~ 106 (452)
.+.++.|.+++.++...-++-....++|.|+ +++|.++.+.|.+...+.+.+.+..|.+|+++| |+|.||..+..
T Consensus 215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsD----R~Gg~rv~~~~ 290 (417)
T COG2223 215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSD----RIGGRRVTLAV 290 (417)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhh----hccchhHHHHH
Confidence 3456677788777776556666778888887 789999999999999999999999999999999 99999988775
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
...+.++...+....+.. ......+..+.......++.+...+....+++.++|+ +-+ .+.|+.+...
T Consensus 291 f~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G--~v~G~vga~G 358 (417)
T COG2223 291 FVGMALAAALLSLFLTGF---------GHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETG--AVTGIVGAIG 358 (417)
T ss_pred HHHHHHHHHHHHcccccc---------ccCcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhh--HHHHHHHHhc
Confidence 555444444443332221 1122334444445555677777778888899999985 445 6888888888
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
++|+..-|..-+... +.+ +.+...|++...+.+++.+..+.
T Consensus 359 ~lGGf~lp~~~g~~~-------------~~t-g~~~~~f~~~~~~~~~a~v~~~~ 399 (417)
T COG2223 359 GLGGFFLPLAFGVSL-------------DLT-GSYTGAFMLLLAFYLVALVLTWA 399 (417)
T ss_pred cccccchhHHHHHHH-------------Hhc-ccHHHHHHHHHHHHHHHHHHHHH
Confidence 888755554433311 111 25888888887777766665544
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=103.25 Aligned_cols=177 Identities=17% Similarity=0.178 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+++++......+....+.+..++|+.+++ +..|++.+..+++..++.++..+++.++|+++| | +.|+.+.....
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d----r-~~~~~l~~~~~ 284 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD----R-GPRRALIAALL 284 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc----c-cchhHHHHHHH
Confidence 34444444444444456666677887777 667899999999999999999999999999999 8 77777766433
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
+ .+..+..+.+..+. .+..++..++.++.............++ ..+|.++ .+.++.....++
T Consensus 285 l-~a~~~l~l~~~~~~--------------~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~--~a~sl~~aa~nl 346 (394)
T COG2814 285 L-LALALLALTFTGAS--------------PALALALLFLWGFAFSPALQGLQTRLAR-LAPDAAD--LAGSLNVAAFNL 346 (394)
T ss_pred H-HHHHHHHHHHhcch--------------HHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchH--HHHHHHHHHHHH
Confidence 3 33333333333221 1334444444555555444444555555 3357777 899999999999
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
|..+|..+||....+. ++....+..+++.++..++.....+
T Consensus 347 gia~GA~lGG~v~~~~---------------g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 347 GIALGAALGGLVLDAL---------------GYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HHHHHHHHHHHHHHhh---------------chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999843322 8888888888777766665554433
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-10 Score=108.68 Aligned_cols=181 Identities=13% Similarity=0.028 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH-
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS- 110 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~- 110 (452)
.+......+......+....++|.|+++ .|.++.+.++...+..+...++.++.|+++| |+++++.........
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~d----r~~~~~~~~~~~~~~~ 328 (438)
T TIGR00712 253 LWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFKGNRGATGVFFMT 328 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcccHHHHHHHH
Confidence 3344344344444445666788999855 6999999999999999999999999999999 886543222222111
Q ss_pred -HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 111 -IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
..++.......+. . . .+......+..+.+.............|.+|+++|+ ++.|+.+....+|
T Consensus 329 ~~~~~~~~~~~~~~---------~--~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g 393 (438)
T TIGR00712 329 LVTIAVIVYWMNPA---------G--N--PLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYLG 393 (438)
T ss_pred HHHHHHHHHHhcCC---------C--c--hHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhhee--eehhhhchHHHhh
Confidence 1112221111110 0 0 111122222233222111122234677999999999 8999998877776
Q ss_pred H-HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 190 N-ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 190 ~-~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
+ .+++.+.|.+.... +|...+.+..++.++..+..++.+||++
T Consensus 394 g~~~gp~l~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 394 GSVAASAIVGYTVDFF---------------GWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhcchhHHHHHHhc---------------cchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4 67887777632221 7888888877777777777777777754
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=109.79 Aligned_cols=175 Identities=16% Similarity=0.075 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCc-c-hhHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR-R-PFIVCGAI 109 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr-~-~~i~~~~~ 109 (452)
.+.+.+..+...........++|.|+ ++.|.+..+.+.+.++..++..++.+++|+++||..+|.++| | ........
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~ 333 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQT 333 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHH
Confidence 34344333333333344556778887 667999999999999999999999999999999433332221 2 22221222
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
...+........++ .+...+...+.+++.+...+...++..+..| ++++ .+.|+.+....+|
T Consensus 334 l~~i~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~g~lg 395 (476)
T PLN00028 334 LGGVFCIWLGRANS---------------LGAAIVVMILFSIFVQAACGATFGIVPFVSR-RSLG--VISGLTGAGGNVG 395 (476)
T ss_pred HHHHHHHHhcccch---------------HHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hhch--hhhhhhhccccHH
Confidence 22222222222211 1222333344445544455556666777654 6788 8888887777777
Q ss_pred HHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
+.+++.+.+.. ...+|+..|++.+++.++..++.++
T Consensus 396 ~~i~~~l~~~~----------------~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 396 AVLTQLLFFTG----------------SSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred HHHHHHHHHhc----------------CCccHhhHHHHHHHHHHHHHHHHHh
Confidence 77776553210 0026888998887776666554443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-10 Score=108.75 Aligned_cols=175 Identities=15% Similarity=0.091 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
.....+.|.+.++.|.+....++......+...++.++.|+++| |+|||+.++.+.. ..+++...+......
T Consensus 288 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~d----r~g~r~~~i~~~~-~~~v~~~~l~~~~~~--- 359 (479)
T PRK10077 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGAL-GMAIGMFSLGTAFYT--- 359 (479)
T ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHH----HhcChHHHHHhHH-HHHHHHHHHHHHHhc---
Confidence 33445667777889998877777777778888899999999999 9999987776444 444444333222110
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhc-chhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMT-QGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
.. . . ........+.+.+.+.. .+..+++++|.+|+++|+ .++|+.+....+|..+++.+.+.....
T Consensus 360 -----~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~~g~~~~~~~~p~~~~~--- 426 (479)
T PRK10077 360 -----QA-P-G-IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWIANYFVSWTFPMMDKN--- 426 (479)
T ss_pred -----Cc-c-c-HHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHH--HHHHHHHHHHHHHHHHHHHHhHHHHhc---
Confidence 00 0 1 11222233333333332 355789999999999999 999999999999999887665431100
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCC
Q 012976 207 PFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLG 249 (452)
Q Consensus 207 p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~ 249 (452)
+...+. .+++..|++.++++++..++.+++.||++++
T Consensus 427 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 463 (479)
T PRK10077 427 SWLVAH------FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 463 (479)
T ss_pred cchhhh------ccCccHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 011111 2677788887777777777667777776543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.1e-09 Score=91.15 Aligned_cols=144 Identities=12% Similarity=0.113 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
+|.+....+.....+.-+...-|.+. +++|+|+...+.+.+......++.+|+.|.++| |+|++-.++..+.+..
T Consensus 266 fw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~D----k~G~n~~wv~~a~~~t 341 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISD----KYGFNLWWVASACILT 341 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHh----hhcceehhHHHHHHHH
Confidence 33333333333333333334445554 889999999999999999999999999999999 9999988888777766
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
..+-..+.++. +--.++..++|..+.......+..++...|+++.| .+.|..+...++|-.
T Consensus 342 l~~H~~l~Ft~-----------------lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLG--Taygf~qsIqNLgla 402 (459)
T KOG4686|consen 342 LLGHSGLFFTF-----------------LSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLG--TAYGFIQSIQNLGLA 402 (459)
T ss_pred HHHhhhHHhhh-----------------ccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhc--chHHHHHHHHhhhhh
Confidence 66655444431 12234555666666666666788899999999999 899999999999999
Q ss_pred HHHhhccc
Q 012976 192 LGYATGSF 199 (452)
Q Consensus 192 ig~~~~~~ 199 (452)
+.+++++.
T Consensus 403 ~i~Iiag~ 410 (459)
T KOG4686|consen 403 FIPIIAGF 410 (459)
T ss_pred HHhhhhhe
Confidence 99999887
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.6e-09 Score=106.18 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
........+...........+.|.|.+ ..|.++.+.++......++..++.++.|+++| |+|||+.++.+..+..
T Consensus 263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~g~~~~~~~~~~~~~ 338 (471)
T PRK10504 263 FSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVN----RFGYRRVLVATTLGLA 338 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHH
Confidence 333333444444555555667777775 58999999999988888888888899999999 9999998776544444
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
+....+. +.... ...+...+...+.|++.+...+...++..+..|+++++ .++++.+....+|..
T Consensus 339 ~~~~~~~-~~~~~------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~ 403 (471)
T PRK10504 339 LVSLLFM-LVALL------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLAS--SGNSLLSMIMQLSMS 403 (471)
T ss_pred HHHHHHH-hcccc------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhcc--chHHHHHHHHHHHHH
Confidence 4333332 22110 11222333455566777777788889999999999999 999999999999999
Q ss_pred HHHhhccc
Q 012976 192 LGYATGSF 199 (452)
Q Consensus 192 ig~~~~~~ 199 (452)
+|+.+++.
T Consensus 404 ig~~i~g~ 411 (471)
T PRK10504 404 IGVTIAGL 411 (471)
T ss_pred HHHHHHHH
Confidence 99998887
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.3e-09 Score=105.57 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 44 QFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
+..++....++|.++ +++|.+..+.+...++..+...++.++.|+++| |+|||+.+++...+..+..........
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~D----r~grr~~~~~~~~~~~~~~~~~~~~~~ 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSD----KIGRRTSMLCFGSLAALFTVPILSALQ 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666778899988 568999989998888888888889999999999 999998776644433222221211111
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
+ .. . ....+....+...+.+...+...++.+|.+|++.|+ .+.|+.+...+
T Consensus 332 ~---------~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~--t~~g~~~~~g~ 382 (432)
T PRK10406 332 N---------VS-S--PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRA--LGVGLSYAVAN 382 (432)
T ss_pred c---------CC-c--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccc--hhhhHHHHHHH
Confidence 1 00 0 011111111111223333345678899999999999 77877765443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.3e-09 Score=101.22 Aligned_cols=171 Identities=15% Similarity=0.149 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHh-hhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 42 GIQFGWALQLSLLTPYV-QELGIPHAWASIIWL-CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~-~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
...........+.++|+ ++.|.++.+.+++.. ...++..++.+++|+++| |+|+||.+++.+.+..+.......
T Consensus 233 l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~d----r~g~~~~l~i~~~l~~l~~l~~~~ 308 (491)
T PRK11010 233 LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQ----RLSLFRALMIFGILQGVSNAGYWL 308 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455667776 679999999999874 556788999999999999 999988776644332322221111
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.... . ...+.+.....+..++.+...+...++..+..+++.++ +..++.+...++|..+++.+.|.
T Consensus 309 l~~~---------~---~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~--t~~gl~~s~~~lg~~~~~~~~G~ 374 (491)
T PRK11010 309 LSIT---------D---KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSA--TQFALLSALSAVGRVYVGPVAGW 374 (491)
T ss_pred HHhc---------c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 0 01122333344444455555566788999999999888 88999999999998877777666
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccC
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (452)
+... .||+..|.+.+++.++..+...+ .+++
T Consensus 375 l~~~---------------~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 375 FVEA---------------HGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHH---------------hChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 2221 17888888877777665554443 3443
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=103.04 Aligned_cols=190 Identities=17% Similarity=0.223 Sum_probs=133.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELG-IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
++.+...+..+..+........+.+.|+++.| .+....+.++++..+...+.-...+++.. |+|.|+.+++ +.+
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~----r~g~~~ll~~-a~~ 281 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLK----RFGIKWLLLL-ALV 281 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHH
Confidence 33444445556666777888889999999999 77788888888888888888888888888 9999987777 555
Q ss_pred HHHHHHHHHhcc-cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH-HHH
Q 012976 110 SIAVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMA 187 (452)
Q Consensus 110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~ 187 (452)
..++=..+.... ++. +.......++..+.|+..+........++.+..|++.|+ ++.++.+. ..+
T Consensus 282 ~~~vR~~l~a~~~~~~-----------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~a--t~Q~l~~~~~~G 348 (400)
T PF03825_consen 282 AYAVRWLLYAYFSDPW-----------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRA--TAQGLYSALSFG 348 (400)
T ss_pred HHHHHHHHHHHhcCCc-----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchH--HHHHHHHHHHhh
Confidence 566666555544 221 111223344456788999999999999999999999999 89998776 468
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
+|..+|..++|++.... .......|...+.+.+++.++..++.+++.||+.
T Consensus 349 lg~~iG~~igG~l~~~~---------g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 349 LGGAIGSLIGGWLYDAF---------GARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHHHHHHHHHHHHHh---------cchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999833221 1110114555666666666666666666666543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.1e-10 Score=106.39 Aligned_cols=134 Identities=16% Similarity=0.251 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
.......+.|.+. +++|.+..+.+++.+...++..++.++.|+++| |+|||+.+........+.........++
T Consensus 253 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~g~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (405)
T TIGR00891 253 YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGD----WLGRRKAYVCSLLAGQLLIIPVFAIGAN- 327 (405)
T ss_pred HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchhhhHHHHHHHHHHHHHHHHhCCc-
Confidence 3344456677777 678999999999999999999999999999999 9999988776443322222222222111
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
.+...+...+.+++.+...+...+++.|.+|+++|+ +++|+.+....+|..+++.+++.+
T Consensus 328 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 328 --------------VAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA--AGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred --------------hHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhH--HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 133334444555555556677788999999999999 999999999999999999998873
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-07 Score=88.13 Aligned_cols=329 Identities=12% Similarity=0.102 Sum_probs=186.2
Q ss_pred HHHHHHHHH--HhCCCchhhH-HHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccc
Q 012976 51 LSLLTPYVQ--ELGIPHAWAS-IIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWL 127 (452)
Q Consensus 51 ~~~~~~~~~--~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~ 127 (452)
-+++.+|+. +.|++..|+. -+.-+..-.......+...+.| ..|.|+.+++ +.+..++...++.+.++.
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd----~l~Ykpviil-~~~~~i~t~~lll~~~sv--- 94 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTD----YLRYKPVIIL-QALSYIITWLLLLFGTSV--- 94 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HhhhhHHHHH-HHHHHHHHHHHHHHHCcH---
Confidence 467788883 3788887764 2222233344566677788999 9988766655 555556666666666554
Q ss_pred cCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecc
Q 012976 128 LGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILP 207 (452)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p 207 (452)
..+-+.-+..|++.+. ..+..+++-...++++-. ++.+......-+|..++.++|..+....
T Consensus 95 ------------~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq--~vts~~raa~l~g~~~s~~lgQllvs~~--- 156 (412)
T PF01770_consen 95 ------------LAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ--KVTSYTRAATLVGRFISSLLGQLLVSFG--- 156 (412)
T ss_pred ------------HHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 4555566666665544 566778888888887777 8888888888888888887776622211
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC----CC---------CCC--CCCccc------ccC-c
Q 012976 208 FTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS----HD---------QSA--PFSEEG------HEQ-S 265 (452)
Q Consensus 208 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~----~~---------~~~--~~~~~~------~~~-~ 265 (452)
..++....++......+..++. +++|..++.. .. +.+ ++.+++ +++ .
T Consensus 157 ----------~~sy~~L~~isl~~~~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (412)
T PF01770_consen 157 ----------GVSYFQLNYISLASVSLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTE 225 (412)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHH-HHcCCCCcccceeccCccccccccccccccccccccccccccCcccc
Confidence 0155555555544333333333 3444433210 00 000 000000 000 0
Q ss_pred cchH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHH
Q 012976 266 SDVH----EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLN 341 (452)
Q Consensus 266 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 341 (452)
.... +..++++++..++ +.++...+-..+...++..+..|.-.... ++ ..+.....|+.+. -...
T Consensus 226 ~~~~~~~l~~l~~~~~~~y~~--~~ll~WSlWWa~atcgy~qv~nYvQ~LW~-~v--~~~~~~~vYNG~V------eA~~ 294 (412)
T PF01770_consen 226 SSSRKSVLRLLWKDFKSCYSN--PRLLLWSLWWAFATCGYYQVINYVQSLWD-TV--PPSDNESVYNGAV------EAAS 294 (412)
T ss_pred cchHHHHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhHHHHHHHHHHHHHH-hc--CCCCCCcccchHH------HHHH
Confidence 0111 1234556666667 66666666566666665555555433331 22 1122223344322 2224
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhH--HHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 342 SVVLGITSVLMEKLCRKWGAGFIW--GISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 342 ~~~~~i~~~~~g~l~dr~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
.+.+.++++..|++..++.+..-+ .....+.+.+++++.+.+ +.+...+...+++..+...
T Consensus 295 tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~-----------------~Iwv~Y~~yIif~~~y~fl 357 (412)
T PF01770_consen 295 TLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTG-----------------NIWVCYAGYIIFRSLYMFL 357 (412)
T ss_pred HHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhh-----------------HHHHHHHHHHHHHHHHHHH
Confidence 555667778888886666554433 333444455555666654 7788888888888888888
Q ss_pred hhccchhhhhhcccccCcccceeeeee
Q 012976 420 YSVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 420 ~~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
.++...-++.....+. -|..+|+.+
T Consensus 358 iTiA~~qIA~~l~~e~--yaLVFGiNt 382 (412)
T PF01770_consen 358 ITIASFQIAKNLSEER--YALVFGINT 382 (412)
T ss_pred HHHHHHHHHHhccccc--eeeeeeeHH
Confidence 8777777777666554 367777644
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=107.24 Aligned_cols=185 Identities=11% Similarity=-0.031 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhHH------------HHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 43 IQFGWALQLSLLTPYVQELGIPHAWASI------------IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
..+.++....+.|.++++.|.+..+.+. ...+..++..++.++.++++| |+|||+.+++...+.
T Consensus 300 ~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~d----r~gRR~~l~~~~~~~ 375 (502)
T TIGR00887 300 LDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVD----IIGRKPIQLMGFFIL 375 (502)
T ss_pred HHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhcchhHHHHHHHHH
Confidence 3344444555678888888887543221 122233445557788899999 999998877644333
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
.++..+.....+. .. ..... ........++.....+..+.+.+|.+|++.|+ ++.++.+....+|+
T Consensus 376 -~~~~~~l~~~~~~--------~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~--~~~g~~~~~~~~~~ 441 (502)
T TIGR00887 376 -TVLFFVLGFAYNH--------LS-THGFL--AIYVLAQFFANFGPNATTFIVPGEVFPTRYRS--TAHGISAASGKAGA 441 (502)
T ss_pred -HHHHHHHHHHHHh--------cc-hhHHH--HHHHHHHHHHhcCCCchhhhhhhccCchhHHH--HHHHHHHHHhhhHH
Confidence 3333222221110 00 00111 11111111112223455677889999999999 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCC
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSH 251 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~ 251 (452)
++++.+.+.+.... -| .+ ......++...|++.+++.++..+ ..+++||++.++.
T Consensus 442 ~~~~~~~~~l~~~~-~~---~~-~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~~~~l 496 (502)
T TIGR00887 442 IIGQFGFLYLAQHG-DP---TK-GYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETKGKSL 496 (502)
T ss_pred HHHHHHhhhhhccc-cc---cc-cccccccchHHHHHHHHHHHHHHH-HheEeccCCCCCH
Confidence 99988866521100 00 00 000001445567777666665544 3467788776543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=102.98 Aligned_cols=139 Identities=18% Similarity=0.162 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcc
Q 012976 43 IQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLS 121 (452)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~ 121 (452)
....+.....+.|.|+++ .|.+..+.++...+..++..++.++.|+++| |+|||+.++....+............
T Consensus 250 ~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~D----r~g~r~~~~~~~~~~~~~~~~~~~~~ 325 (434)
T PRK15075 250 TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSD----RIGRRPVLIAFTVLAILTAYPALSWL 325 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677889999854 8999999998888888989999999999999 99999987664333222222111111
Q ss_pred cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH-HHHHHHHHHHhhccc
Q 012976 122 ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMAVGNILGYATGSF 199 (452)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~g~~ig~~~~~~ 199 (452)
.+ .. ..........+.+++.+...+....++.|.+|+++|+ .+.++... +..+++.++|.+.++
T Consensus 326 ~~---------~~---~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg--~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 326 VA---------AP---SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRT--AGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred Hc---------CC---chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccc--hheeHHHHHHHHHHhhhHHHHHHH
Confidence 00 00 0111222233334455555566678899999999999 77777533 333445667766655
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.7e-09 Score=102.00 Aligned_cols=187 Identities=14% Similarity=0.112 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCc--chhHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR--RPFIVCG 107 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr--~~~i~~~ 107 (452)
+.+....+..+..+-+......+...|. +++|++..+...+..+..+.+.++..++|++.| |+|.| +++++..
T Consensus 281 ~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~----r~g~k~~~~l~~~l 356 (477)
T PF11700_consen 281 RQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQD----RFGPKTKRTLLISL 356 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHHHH
Confidence 3444555555555556666667777777 689999999999999999999999999999999 99988 6666544
Q ss_pred HHHHHHHHHH-HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 108 AISIAVAVLL-IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
....+++... +++.++. . .....+.+.+...+.|+..+..++...++.+|+.|+++++ ..+|++....
T Consensus 357 ~~~~~i~~~g~~G~~~~~--------~-g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~--efFgly~i~g 425 (477)
T PF11700_consen 357 ILWIIIPLYGLFGFWPSF--------F-GLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREA--EFFGLYAITG 425 (477)
T ss_pred HHHHHHHHHHHHHhhhcc--------c-CcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhh--HHHHHHHHHH
Confidence 4333333322 2222111 0 0111234555566788889999999999999999999999 9999999999
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
-..+.+||++.+.+.... ++.|..+....++.++..++ ++.+++++
T Consensus 426 k~ss~lGPll~g~i~~~t--------------g~~r~g~~~l~~lf~~gl~l-l~~v~~~~ 471 (477)
T PF11700_consen 426 KASSWLGPLLFGLITDAT--------------GSQRYGFLFLLVLFLIGLIL-LFFVDVEK 471 (477)
T ss_pred HHHHHHHHHHHHHHHHHh--------------CCchhHHHHHHHHHHHHHHH-Hhhccchh
Confidence 999999999887733322 25777777666555555443 45555443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-09 Score=104.85 Aligned_cols=139 Identities=18% Similarity=0.095 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
..+...........+.|.+.++.|.++.+.+...+...++..++.++.|+++| |+|||+ .+....+..+....+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~-~~~~~~~~~~~~~~~~ 332 (398)
T TIGR00895 258 LYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLAD----RLGPRV-TALLLLLGAVFAVLVG 332 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcchHH-HHHHHHHHHHHHHHHH
Confidence 33344455566667788777899999999999999999999999999999999 999884 4443433333333333
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (452)
....+ .+...+...+.+++.+...+...+++.|.+|+++|+ ++.|+......+|..+|+.++|
T Consensus 333 ~~~~~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 333 STLFS---------------PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRA--TGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred HHhhC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHhHH
Confidence 21212 133445566777888888888999999999999999 9999999999999999998876
Q ss_pred c
Q 012976 199 F 199 (452)
Q Consensus 199 ~ 199 (452)
.
T Consensus 396 ~ 396 (398)
T TIGR00895 396 Y 396 (398)
T ss_pred h
Confidence 5
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=103.25 Aligned_cols=130 Identities=13% Similarity=0.163 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 012976 49 LQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (452)
Q Consensus 49 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
....++|.++++.|.++.+.+.+.+...++..++.++.|+++| |+|||+.+..+ .+...+........++.
T Consensus 249 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~d----r~~~~~~~~~~-~~~~~~~~~~~~~~~~~---- 319 (426)
T PRK12307 249 PIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCAD----RIGLKKTFSIG-LLMSFLFIFPLFRIPQD---- 319 (426)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHH-HHHHHHHHHHHHHHccc----
Confidence 3456788888888999999999989999999999999999999 99999876654 33333333222221110
Q ss_pred CCCCCCCchhHHHHHHHHHHHHH--hhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 129 GDRGDFRPRAIAVFVFGFWILDV--ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
.... +...+.+. +.....+....++.|.+|+++|+ +++|+......+|+.++|.+.+++
T Consensus 320 ---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~~~~~gp~~~g~l 380 (426)
T PRK12307 320 ---------NYLL--LGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG--LGTGLIYNLAATSGTFNSMAATWL 380 (426)
T ss_pred ---------cHHH--HHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh--hhhhHHHHHHhHHHHHHHHHHHHH
Confidence 0111 11122222 11222344567889999999999 999999999999999999988773
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-09 Score=101.57 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQEL--GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
.+......++....++....++|.++++. |.++.+.+.......++..++.++.|+++| |++||+..++...+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~d----r~~~r~~~~~~~~~~ 319 (412)
T TIGR02332 244 IMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSD----RLKERKHHTALPYLF 319 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhc----ccCccHHHHHHHHHH
Confidence 34445555555566777788999999775 667788899999999999999999999999 999877544333333
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
..+++.+.....+ . ........+..++.....+.......|.+|+++|+ ++.|+.+....+|+
T Consensus 320 ~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~a~g~~~~~~~~g~ 382 (412)
T TIGR02332 320 AAAGWLLASATDH-------------N--LIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARA--IAIAVINATGNIGS 382 (412)
T ss_pred HHHHHHHHHhcCC-------------H--HHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHH--HHHHHHHHhhhhhh
Confidence 3333322211111 1 11111111222233222333445567889999999 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIF 231 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~ 231 (452)
.++|.+.+.+.... ++|++.+++.+++
T Consensus 383 ~~~p~~~g~i~~~~--------------g~~~~~~~~~~~~ 409 (412)
T TIGR02332 383 ALSPFLIGILKDAT--------------GSFNSGLWFVAAL 409 (412)
T ss_pred hhhhhhcccccccC--------------CCCchhHHHHHHH
Confidence 99998876632211 2588888766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=101.72 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
+.+......+..+........+.+.|.++.|.++.+.|.+.++..+...+..++.|++.| |+|+|+.+.. +.+..
T Consensus 206 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~l~~-~~~~~ 280 (382)
T PRK11128 206 TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFR----RWSARDLLLL-SAICG 280 (382)
T ss_pred hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH----HCCHHHHHHH-HHHHH
Confidence 344444444444455555667778888889999999999999888888888999999999 9999987665 44555
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH-HHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS-LFMAVGN 190 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~g~ 190 (452)
.+........++ .+..++...+.+++.+...+....+..+. ++++++ +..+..+ ....+|.
T Consensus 281 ~~~~~~~~~~~~---------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~g~ 342 (382)
T PRK11128 281 VVRWGLMGSTTA---------------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVI--RLQALYSALAMGGSI 342 (382)
T ss_pred HHHHHHHHhhhh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhH--HHHHHHHHHHHHHHH
Confidence 555555544433 24556677778888887777788888886 556667 7788775 5567777
Q ss_pred HHHHhhcccc
Q 012976 191 ILGYATGSFS 200 (452)
Q Consensus 191 ~ig~~~~~~~ 200 (452)
.+|+.++|.+
T Consensus 343 ~ig~~i~G~l 352 (382)
T PRK11128 343 AIMTVLSGFL 352 (382)
T ss_pred HHHHHHHHHH
Confidence 8888888873
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=9.3e-09 Score=100.40 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 45 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
+........+|.+. +.+|.++...|++.++..++..++..+.+++.+ |+++++.+.. +.+....+.+.+.+.++
T Consensus 232 l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~----~~~~~~lv~~-~~~~~a~~~~~lal~~~ 306 (524)
T PF05977_consen 232 LFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRR----RLSSRRLVLL-ASLLFALALLLLALSPS 306 (524)
T ss_pred HhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcchhhHH-HHHHHHHHHHHHhcchH
Confidence 33344455677776 678999999999999999999999999999999 8888776655 44555555566655544
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWF 203 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~ 203 (452)
. +..++..++.|++.........+.+.+..|++.|| |++++.......+..+|..+.|.+...
T Consensus 307 ~---------------~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~G--Rv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 307 F---------------WLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRG--RVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 55566677788888888888889999999999999 999999999888888888888773322
Q ss_pred eeccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 204 KILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 204 ~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
. +.+..+.+.++..++..++.
T Consensus 370 ~---------------g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 370 F---------------GVRTALLIAGAALLLSALIA 390 (524)
T ss_pred h---------------CHHHHHHHHHHHHHHHHHHH
Confidence 2 77777777766555554444
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.9e-09 Score=102.00 Aligned_cols=180 Identities=8% Similarity=-0.006 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcch-----h-
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRP-----F- 103 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~-----~- 103 (452)
+..+......++.....+....++|.|+ +.+|.+..+.++..++..++..++.++.|+++| |+++|+. .
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d----~~~~~~~~~~~~~~ 336 (465)
T TIGR00894 261 LPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLAD----FLKSSKTLSLTAAR 336 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCcHHHHH
Confidence 4456666666777777777788999998 668999999999999999999999999999999 5443321 1
Q ss_pred -HHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHH
Q 012976 104 -IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182 (452)
Q Consensus 104 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (452)
+.................. .. ......++...+.+.+.+...+.......|..|+ .++ .+.++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~----------~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g--~~~g~~ 401 (465)
T TIGR00894 337 KIFNGIGGLGPGIFAYALPY----------LS--AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLG--FIKGIT 401 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------cC--CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHH--HHHHHH
Confidence 1111111111111111110 00 0012222233333344444444455566677764 788 899999
Q ss_pred HHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 183 ~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
+....+|+.++|.+.+.+.... ..++|+..|.+.+++.++..++..+
T Consensus 402 ~~~~~l~~~i~p~l~g~~~~~~------------~~~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 402 GLPGFIGGLIASTLAGNILSQD------------SKNVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHHHHHHhhheeeCCC------------CchHHHHHHHHHHHHHHHHHHHeee
Confidence 9999999999988876521100 0025888888887776666554443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=96.40 Aligned_cols=171 Identities=15% Similarity=0.091 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+..+.+....++....++....++|.|+++.|.+.. .+....+..+.+.++ .++++||.. |.|+|+.......+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~-r~~~r~~~~~~~~~~ 266 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVA-RAGLRSIYIRAAALL 266 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhh-hhhhHHHHHHHHHHH
Confidence 445666666666667777778899999988888764 566666666655555 477888332 224444433322333
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
..+.........+. ...++...+.+++.....+..+++.+|.+|++.|+ ++.|+.+....+|+
T Consensus 267 ~a~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rg--t~~G~~~~~g~~~~ 329 (368)
T TIGR00903 267 IAAFFLALAFELNR---------------LALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHG--KAAGAIGFTSRAIS 329 (368)
T ss_pred HHHHHHHHHHcccc---------------HHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcC--cccchhhHHHHHHH
Confidence 33333232222111 12223334444555556666788999999999999 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (452)
..++.+.+... .+.+..|.+.++..++..+...
T Consensus 330 ~~~~~~~~~~~-----------------~~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 330 VALALAAMLFI-----------------SSAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred HHHHHHHHHHh-----------------cCHHHHHHHHHHHHHHHHHHHH
Confidence 88887765521 1455667777666666555443
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-09 Score=98.73 Aligned_cols=184 Identities=15% Similarity=0.101 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
.++.|.+++.+++..-.+.....++|.|.++ ..+.........+..+...+..|++|+++| |+|+||++++....
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LAD----RiG~~~vl~~~~i~ 325 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISD----KFGGVRVTLINFIF 325 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHH----hcCchHHHHHHHHH
Confidence 3446666766666543445555678888744 233333333344566788999999999999 99999988875554
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc------c------------
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK------D------------ 171 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~------------ 171 (452)
..+.........+. .....++.+.+......++.+...+....++++.+|+ +
T Consensus 326 ~~i~~~~~~l~lp~----------~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~ 395 (462)
T PRK15034 326 MAIFSALLFLTLPG----------TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQRE 395 (462)
T ss_pred HHHHHHHHHHHhcc----------ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhH
Confidence 44444333332221 1112344455555555566777778888888888874 1
Q ss_pred ---ccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 172 ---HRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 172 ---~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
+-| .+.|+.+....+|+.+-|.+-+.. .+.+ +++...|+...+..+++..+.++..-
T Consensus 396 ~~~~~g--~v~G~v~a~G~~Ggf~~p~~~g~~-------------~~~~-g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 396 AVTETA--AALGFISAIGAVGGFFIPQAFGMS-------------LNMT-GSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHHHHH--HHHHHHHHHHHcccchhhHHHHHH-------------HHHc-CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 222 556666666666666655443331 1111 36777888888777777777766543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-08 Score=96.79 Aligned_cols=149 Identities=10% Similarity=0.030 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
++..................+.|.+. +++|.++.+.++......++..++.++.|+++| |+|+|+.+.+ +.+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~----r~~~~~~~~~-~~~~~ 291 (406)
T PRK15402 217 FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTS----RRPLRSLIRM-GLWPM 291 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHH-HHHHH
Confidence 33333333333333344445567776 678999999998877777788889999999999 9999887666 44444
Q ss_pred HHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 112 AVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
.++..+....+.. . ....+...++..+.+++.+...+......... ++++|+ +..+..+....+|..
T Consensus 292 ~~g~~~~~~~~~~--------~--~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~~g--~~~~~~~~~~~~~~~ 358 (406)
T PRK15402 292 VAGLLLAALATVI--------S--SHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVSKG--TVSAAMGMLSMLIFT 358 (406)
T ss_pred HHHHHHHHHHHHc--------c--cccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccccc--HHHHHHHHHHHHHHH
Confidence 4444433322110 0 11123445666677777776666655554433 458889 999999999999999
Q ss_pred HHHhhccc
Q 012976 192 LGYATGSF 199 (452)
Q Consensus 192 ig~~~~~~ 199 (452)
+|+.+++.
T Consensus 359 ~g~~~~~~ 366 (406)
T PRK15402 359 VGIELSKH 366 (406)
T ss_pred HHHHHHHh
Confidence 99888877
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.8e-09 Score=100.36 Aligned_cols=166 Identities=8% Similarity=0.028 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQEL----GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
..+.....+.....+.+.|.++. +.+..+.|.+.++..+...++.+..|++.| |+|||+.++++ .+...+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~----r~g~~~~l~~~-~~l~~l~ 297 (396)
T TIGR00882 223 YVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIIN----RIGAKNALLIA-GTIMSVR 297 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccchhHHHH-HHHHHHH
Confidence 33333334444444566666443 455667888888888888889999999999 99999877664 4444444
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFMAVGNILG 193 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~g~~ig 193 (452)
.......++. +.+.+...+.+++..........+..+..+++.++ ...+. .+....+|..++
T Consensus 298 ~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a--t~~~~~~~~~~~lg~~~~ 360 (396)
T TIGR00882 298 IIGSSFATTA---------------LEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSA--TIYLIGFQFAKQLAMIFL 360 (396)
T ss_pred HHHHHhcCCh---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEE--EeehHHHHHHHHHHHHHH
Confidence 4444443332 33445566666666555555556677777877777 55554 567889999999
Q ss_pred HhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 194 YATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 194 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
+.++|++.... |++..|.+.+++.++..++..+
T Consensus 361 ~~l~G~l~~~~---------------G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 361 STLAGNMYDSI---------------GFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHhHHHHHHhc---------------ccHHHHHHHHHHHHHHHHHHHH
Confidence 98888733221 8889999888887777666544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.7e-09 Score=101.92 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhh-hhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
..+...........+.++|+++.|.++++.|++.....+ ...++.++.|++.| |+|+||.+.....+..+.....
T Consensus 216 ~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~----r~g~~~~l~~~~~~~~~~~~~~ 291 (390)
T TIGR02718 216 LALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVR----RAGLWRTFILGVGLAGSLALLW 291 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHHH
Confidence 334444455556667888998899999999999887764 55566889999999 9999987766433321222222
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
.... +. ..............+.+++.+...+...+...+..++ ++++ +.++..+...++|..+|+.+
T Consensus 292 ~~~~-~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lg~~~g~~~ 359 (390)
T TIGR02718 292 FAQA-AF---------WLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAG--TDVTAVQSTRDLGELIASSI 359 (390)
T ss_pred HHHH-Hc---------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHHHHHHHH
Confidence 1111 10 0001112222223333455666666777777777766 7788 89999999999999999999
Q ss_pred ccccccceeccccccccccccccchhHHHHHHHHHHHHHH
Q 012976 197 GSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITT 236 (452)
Q Consensus 197 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 236 (452)
+|.+.... |++..|...+++.++..
T Consensus 360 ~G~l~~~~---------------G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 360 AGYLTDRF---------------GYAGGFLSGTVLAVLAI 384 (390)
T ss_pred HHHHHHHH---------------ccHHHHHHHHHHHHHHH
Confidence 88732211 77777877765554443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=102.72 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=105.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 41 GGIQFGWALQL-SLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 41 ~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
+.......... .+.|.+.++ +|.++.+.+.+.....++..++.++.|++.| |+|||+.+.. +.....++....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~-~~~~~~~~~~~~ 294 (365)
T TIGR00900 220 LLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGR----YFKRMALMTG-AIFVIGLAILVV 294 (365)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH----HhchhHHHHH-HHHHHHHHHHHH
Confidence 33333333333 677777754 8999999999999999999999999999999 9999887665 333344444443
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGS 198 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~ 198 (452)
.+.++ ..+...+...+.+++.+...+...+++.|..|+++|+ ++.++.+....+|..+++.+++
T Consensus 295 ~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~g 358 (365)
T TIGR00900 295 GLTPP--------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLG--RVFGAQFSLSHAAWPLGLILAG 358 (365)
T ss_pred Hhhch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 33221 1355566677788888888888899999999999999 9999999999999999998877
Q ss_pred c
Q 012976 199 F 199 (452)
Q Consensus 199 ~ 199 (452)
.
T Consensus 359 ~ 359 (365)
T TIGR00900 359 P 359 (365)
T ss_pred H
Confidence 6
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7e-09 Score=99.04 Aligned_cols=180 Identities=11% Similarity=0.041 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV---QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+.+......+...+.......+.+.+. ++.+.+....+.+.....+.....+++.|++.| |+++|+.+.. +.
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~l~~-~~ 281 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLN----AANIRPLMTA-GT 281 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHc----cCCchhHHHH-HH
Confidence 333333333443444444444555555 344666667788888887777778888999999 9998887665 44
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
....+++.......+ ..+...+...+.+++.....+...+.+.+..|++.|+ +..+..+ ...+
T Consensus 282 ~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~--~~~~~~~-~~~~ 344 (395)
T PRK10054 282 LCFVIGLVGFIFSGN--------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKA--SYFSAQS-LGWL 344 (395)
T ss_pred HHHHHHHHHHHHcch--------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccce--ehHhHHH-HHHH
Confidence 444444443333211 1233445566777777776777788999999999999 7777655 5568
Q ss_pred HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCC
Q 012976 189 GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (452)
Q Consensus 189 g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (452)
|..+||.++|.+.... +.+..|++.+....+..++.....+|+|-
T Consensus 345 G~~~Gp~~~G~l~~~~---------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (395)
T PRK10054 345 GAAINPLVSGVILTTL---------------PPWSLFVILALAIVAAWLLMLKGMRARPW 389 (395)
T ss_pred HHHHHHHHHHHHHHHc---------------ChhhHHHHHHHHHHHHHHHHHhccccCcc
Confidence 8999999988733322 66666766655555444444455555543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.6e-09 Score=102.78 Aligned_cols=148 Identities=20% Similarity=0.141 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCC-cchhHH-HHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIV-CGAI 109 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Gr-r~~~i~-~~~~ 109 (452)
.+...+..+...........+.|.+. +.+|.++.+.+.+.+...++..++.++.|+++| |.++ |+..+. ....
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~~~~~ 293 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSD----KLFNGRRGPLAVFFMA 293 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHH----HHcCCcchHHHHHHHH
Confidence 34444444444555566667888887 668999999999999999999999999999999 7533 332222 1112
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
....+.......+. ...+...+...+.+............+..|.+|+++|+ ++.++.+....+|
T Consensus 294 ~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~g 358 (379)
T TIGR00881 294 LIIVSLLVYWLNPA-------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAG--TAAGFVGFFAYLG 358 (379)
T ss_pred HHHHHHHHHhcCcc-------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhH--HHHHHHHHhhhhh
Confidence 22222222211111 11122333344444444444455667889999999999 9999999999999
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..+++.+.+.
T Consensus 359 ~~~~~~~~g~ 368 (379)
T TIGR00881 359 GILAGLPLGY 368 (379)
T ss_pred hhhhhhhHHH
Confidence 9999888776
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8e-09 Score=100.35 Aligned_cols=173 Identities=16% Similarity=0.226 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCC-cchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Gr-r~~~i~~~~~~ 110 (452)
..+.++.......+++.....++|.+.++.|.++.+.+.+.++..+...++.++.|+++| +... |+.+...+.+.
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD----~~~~~~~~~~~~~ll~ 374 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLAD----KPGIRALVLFLLTLLI 374 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcC----ccccchHHHHHHHHHH
Confidence 445555555666678888888999999999999999999999999999999999999999 7663 33344445555
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
..++.+...+.+++ +.+.....++|++.+.........+.|..+.++-. .+.|+.....+++.
T Consensus 375 ~gl~~~~~p~~~~~---------------~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~--~a~Gl~l~~~gi~~ 437 (509)
T KOG2504|consen 375 AGLARLFLPFATTY---------------VGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLS--NAYGLLLLFQGIGA 437 (509)
T ss_pred HHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcc--hHHHHHHHHhHHHH
Confidence 55555555555443 56666777788888877777777899999999999 99999999999999
Q ss_pred HHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 191 ILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 191 ~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
++|+.+++.+.... ++|...|+..++..++.....
T Consensus 438 l~gpPiag~~~d~t--------------g~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 438 LVGPPIAGLLYDIT--------------GNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred HcCcccceeeeecc--------------CCeeeehhhcChHHHHHHHHH
Confidence 99998888622211 257778888877766655443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.2e-09 Score=99.41 Aligned_cols=186 Identities=16% Similarity=0.142 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCC----CCCcchhHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR----FGRRRPFIV 105 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r----~Grr~~~i~ 105 (452)
..+|...+..++.+.+......++|.|+ +.+|++..+.|++.+++.+...+...++|.++||.+.| .-+||.+-.
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 3466677788888889999999999999 67999999999999999999999999999999965543 124555555
Q ss_pred HHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHH
Q 012976 106 CGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (452)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (452)
.+....++.++.+.+.++. ........+.+...+ .+...+....-..|. .++.-+ ..+|+.+..
T Consensus 338 i~~~~~ai~l~~l~~~~~~---------~~~~a~~~l~~~~~~----~g~~~~Gf~~~~~~~-apq~a~--~l~g~~~~~ 401 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDE---------HRLLAVILLTIAIGL----SGFNISGFYKNHQDI-APQHAG--FVMGIINFV 401 (466)
T ss_pred HHHHHHHHHHHeeeecCCC---------cchHHHHHHHHHHHH----cccchhhhHhhhhhc-cchHHH--HHHHHHHHH
Confidence 5555555555555554321 111122222222211 222222222223333 345667 899999999
Q ss_pred HHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccc
Q 012976 186 MAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAH 244 (452)
Q Consensus 186 ~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 244 (452)
..+..+++|.+.+.+.. + .....|+..|++.+++.++..++..++-.
T Consensus 402 ~~~~~~~~P~~vg~~~~--------~----~t~~eW~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 402 GALAGFIAPLLVGIIVT--------D----NTREEWRIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred HHHHHHHHHHheeeEeC--------C----CCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence 99999999988777221 0 02248999999999888887765555543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.7e-08 Score=96.06 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=95.1
Q ss_pred HHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 48 ALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 48 ~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.....+++++. +..|.++.+.+++.+...++..++.++.|+++| |+|+|+...... ....++........+.
T Consensus 216 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~----r~~~~~~~~~~~-~~~~i~~~~~~~~~~~-- 288 (382)
T PRK10091 216 FAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSG----RYSPLRIAAVTD-FIIVLALLMLFFFGGM-- 288 (382)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecc----ccCchhHHHHHH-HHHHHHHHHHHHHHhh--
Confidence 33445666666 568999999999999999999999999999999 999988776643 3334433333221110
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHH-HhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRA-LLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
.+...+...+.+.+.....++... ...+..+++.++ .+ ..+....+|..+||.+++++....
T Consensus 289 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~g~~~Gp~~~G~l~~~~- 351 (382)
T PRK10091 289 ------------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLG--AA--GGQIAFNLGSAIGAYCGGMMLTLG- 351 (382)
T ss_pred ------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHH--HH--HHHHHHHHHHHHHHHHhHHHHHcc-
Confidence 122223333344444333343333 334444444444 33 335677899999999988732211
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
.+|++.+...+++..+.......
T Consensus 352 -------------~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 352 -------------LAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred -------------cCcchHHHHHHHHHHHHHHHHHH
Confidence 27888888776555544443333
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.5e-08 Score=95.14 Aligned_cols=154 Identities=13% Similarity=0.079 Sum_probs=103.8
Q ss_pred HHHHHHHH-HHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 47 WALQLSLL-TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 47 ~~~~~~~~-~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
......+. |.+.+++|.++.+.+.+.....++..++.++.|++.| |.+ |+.++....+.......+....++
T Consensus 232 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~----r~~-~~~l~~~~~~~~~~~~~l~~~~~~-- 304 (394)
T PRK10213 232 QFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILK----RSV-KLALAGAPLVLAVSALVLTLWGSD-- 304 (394)
T ss_pred HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh----ccc-hhHHHHHHHHHHHHHHHHHHHhhh--
Confidence 33334454 5666888999999999999999999999999999999 854 444444333333333333332222
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccccccee
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKI 205 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~ 205 (452)
.+...+...+.|++.+...+...+++.+..| ++++ +..+......++|..+|+.++|.+....
T Consensus 305 -------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~lg~~~G~~l~G~l~~~~- 367 (394)
T PRK10213 305 -------------KIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAE--KAGSIQVAVIQLANTCGAAIGGYALDNI- 367 (394)
T ss_pred -------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 2444456667788888888888888888887 4556 6677777788899999999988833221
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHHHH
Q 012976 206 LPFTLTSACNVDCANLKSAFFLDVIFIAITTCI 238 (452)
Q Consensus 206 ~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 238 (452)
|++..+...+++.++..+.
T Consensus 368 --------------g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 368 --------------GLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred --------------ChhhHHHHHHHHHHHHHHH
Confidence 6667777666555444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-08 Score=88.95 Aligned_cols=183 Identities=11% Similarity=0.037 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
.+.+..|.+.+.+-.+++.++....++|.++.|.|+|+.+.|.+.+...+.....++....+.+ |...+|++.+..
T Consensus 205 w~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~----R~~n~r~~~~~~ 280 (395)
T COG2807 205 WRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR----RSKNQRPLVVLA 280 (395)
T ss_pred ccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH----HhcccchHHHHH
Confidence 3344566677666667789999999999999999999999999999999999999999999999 544445555555
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
...+.++++-+.+.+.. ....| ..++|+|.+..++....++.+..++.++.. +..+..+....
T Consensus 281 ~~~~l~G~~G~~~~P~~-----------~~~lw-----~~llG~G~G~~F~laL~li~~rs~~a~~Aa-~LSgmaQg~GY 343 (395)
T COG2807 281 LLLMLVGLVGLLLAPGQ-----------LPILW-----ALLLGLGQGGAFPLALTLILLRSSDAAIAA-ALSGMAQGVGY 343 (395)
T ss_pred HHHHHHHHHHHHHhhhh-----------HHHHH-----HHHHhCccchHHHHHHHHHHhhcCChHHHH-HHHHHhhhhhH
Confidence 55566555555444332 11111 367788888889999999988887655432 34444444444
Q ss_pred HHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcccc
Q 012976 188 VGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHE 245 (452)
Q Consensus 188 ~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e 245 (452)
+=...||.+.|++ .|. . ++|+......+.+.+++.+..+..-|+
T Consensus 344 llAa~GP~l~G~l---------hDa----~-gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 344 LLAAFGPWLFGFL---------HDA----T-GSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred HHHhhhhhhHhHH---------HHh----c-CChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 4444555554442 221 1 589988888777766666655554443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-06 Score=78.44 Aligned_cols=353 Identities=13% Similarity=0.041 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHH---HHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGI-PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC---GAI 109 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~---~~~ 109 (452)
+.+....+....+.-......+.++.++.- +--..+....+-.+...+..|..|.+.| |..|.|..... --+
T Consensus 5 ~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD----~~~Rl~~~~~~l~~Qn~ 80 (432)
T PF06963_consen 5 WRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWID----RSPRLKVIRTSLVVQNL 80 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHh----CCcchhhHHHHHHHHHH
Confidence 344445555566667777777888866632 3333444444556677888999999999 77666654321 111
Q ss_pred HHHHH--HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhc-chhHHHHhhhc----c--Cccccchhhhhh
Q 012976 110 SIAVA--VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMT-QGPCRALLADL----T--GKDHRRTRVANA 180 (452)
Q Consensus 110 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~----~--~~~~r~~~~~~~ 180 (452)
..+++ .+...+..... ...........+....+.+...... .....+.--|| . +++... +.++
T Consensus 81 sv~~s~~~~~~l~~~~~~------~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La--~~NA 152 (432)
T PF06963_consen 81 SVAASCALFLLLLSYPSS------SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALA--RMNA 152 (432)
T ss_pred HHHHHHHHHHHHHhCCcc------ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHH--HHHH
Confidence 11111 11111211110 0001111122222121221111111 11111222233 3 233344 6677
Q ss_pred HHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcc-------ccCCCCCCCC
Q 012976 181 YFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA-------HEVPLGSHDQ 253 (452)
Q Consensus 181 ~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~-------~e~~~~~~~~ 253 (452)
...-.-.+..+++|++.|.+.... +......+.++..++...+-++++ |+-..++.++
T Consensus 153 ~mRRIDL~ckllaPl~vG~l~t~~---------------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~ 217 (432)
T PF06963_consen 153 TMRRIDLFCKLLAPLFVGLLMTFA---------------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSS 217 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCc
Confidence 777777788999998888732211 555555555555555544433322 2211111111
Q ss_pred CCCCCcccc-cCccchHHHHHHH-----------HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCC
Q 012976 254 SAPFSEEGH-EQSSDVHEAFLWE-----------LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP 321 (452)
Q Consensus 254 ~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (452)
+++..++++ .+.++......++ ++..+++ +.+. ..+...+.++...++..-.+.|+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q--~vfl-as~alalLY~TVLsf~~lmt~yl~-------- 286 (432)
T PF06963_consen 218 ESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQ--PVFL-ASFALALLYFTVLSFGGLMTAYLK-------- 286 (432)
T ss_pred cccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhC--HHHH-HHHHHHHHHHHHhcCcHHHHHHHH--------
Confidence 111110000 0000111111111 2222333 3333 233333333333333333444442
Q ss_pred CcccccccccchhhHHHH--HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-C
Q 012976 322 NEGQNYATGVRMGALGLM--LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP-P 398 (452)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~--~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 398 (452)
..|++...++.. ..++.++.+.++.+++.+|+|..|.-.++.....+++.+....-..... | +
T Consensus 287 ------~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~--------~~~ 352 (432)
T PF06963_consen 287 ------SQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS--------PFS 352 (432)
T ss_pred ------HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC--------Cch
Confidence 124443434433 4567777888999999999999998888887776655543332111111 1 1
Q ss_pred CchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcc
Q 012976 399 NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 399 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
..+...++...++-=+|.=..--...-+++|.+|+++||.
T Consensus 353 ~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~ 392 (432)
T PF06963_consen 353 SISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGA 392 (432)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhH
Confidence 1122222222222223322233334567889999999864
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-08 Score=100.44 Aligned_cols=155 Identities=15% Similarity=-0.024 Sum_probs=97.8
Q ss_pred HHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCC
Q 012976 55 TPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDF 134 (452)
Q Consensus 55 ~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (452)
+.+.+.++.+..... ....+...++.++.++++| |+|||+.+++.. +...++.++..+.++.
T Consensus 347 ~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~l~d----r~grr~~~~~~~-~~~~~~~l~~~~~~~~---------- 408 (505)
T TIGR00898 347 VLDLGNLGGNIYLDL---FISGLVELPAKLITLLLID----RLGRRYTMAASL-LLAGVALLLLLFVPVD---------- 408 (505)
T ss_pred hccccccCCChHHHH---HHHHHHHHHHHHHHHHHHH----HhCCHHHHHHHH-HHHHHHHHHHHHcCCC----------
Confidence 334455665543333 3344566677888899999 999998877644 4444444444433221
Q ss_pred CchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccc
Q 012976 135 RPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSAC 214 (452)
Q Consensus 135 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~ 214 (452)
. .+...+...+.+++.+...+...++.+|.+|++.|+ .++|+.+....+|.+++|.+.+. ..
T Consensus 409 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~ig~~i~p~i~~~-~~------------ 470 (505)
T TIGR00898 409 -L--YFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRN--LGVGVCSTMARVGSIISPFLVYL-GE------------ 470 (505)
T ss_pred -c--hHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHh--hhHhHHHHHHHHHHHHHhHHHHH-HH------------
Confidence 0 122223333444555566677788999999999999 99999999999999999887652 11
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012976 215 NVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (452)
Q Consensus 215 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (452)
.++...+.+.+++.++..++ .+++||++.++
T Consensus 471 ----~~~~~~~~~~~~~~~~~~~~-~~~lpet~~~~ 501 (505)
T TIGR00898 471 ----KWLFLPLVLFGGLALLAGIL-TLFLPETKGVP 501 (505)
T ss_pred ----HHHhhHHHHHHHHHHHHHHH-HHcCcCCCCCC
Confidence 14455666666555555444 44667776543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.7e-08 Score=93.70 Aligned_cols=147 Identities=11% Similarity=-0.027 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+..+............+.....++|.+.++.|.+..+.+.+.+...++..++.++.|+++| |+++||..+..+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~d----r~~~~~~~~~~~~~~ 272 (355)
T TIGR00896 197 PLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALAR----RVKDQRGIVAVLAVL 272 (355)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHh----hhccchHHHHHHHHH
Confidence 3344444333444455566677899999889999999999999999999999999999999 995544444334444
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccC-ccccchhhhhhHHHHHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-KDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g 189 (452)
..++.....+.++. ... ....+.|++.+...+...+.+.+..+ +++++ ...++.+....+|
T Consensus 273 ~~~~~~~~~~~~~~---------------~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~ 334 (355)
T TIGR00896 273 QLVGLCGLLFAPMH---------------GLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAA--ALSAMAQSIGYLL 334 (355)
T ss_pred HHHHHHHHHHhhhh---------------HHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHH--HHHHHHHHHHHHH
Confidence 54454444333221 111 12345677777777776676665554 45567 7888888888888
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..++|.+.+.
T Consensus 335 ~~~gp~~~G~ 344 (355)
T TIGR00896 335 AALGPLFVGV 344 (355)
T ss_pred HHHHHHHHHH
Confidence 8889888776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.5e-08 Score=108.83 Aligned_cols=133 Identities=16% Similarity=0.182 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHH-HHhCCCch-hhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 45 FGWALQLSLLTPYV-QELGIPHA-WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 45 ~~~~~~~~~~~~~~-~~~g~s~~-~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
........++|.+. +.+|.+.. +.+++.++..++..++.++.|+++| |+++|+.+.++. +...++.+++.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~----r~~~~~~~~~~~-~~~~~~~~~~~~~~ 320 (1146)
T PRK08633 246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSG----RHIELGLVPLGA-LGLALSLFLLPTAP 320 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhC----CceEccchhHHH-HHHHHHHHHHHHhh
Confidence 34444556677776 67899998 9999999999999999999999999 999888776643 33444444443332
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+ .+..++..++.+++.+...++..+++.+..|++.|+ +++++.+....+|..+++.+++.
T Consensus 321 ~---------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg--~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 321 S---------------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG--KVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred h---------------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh--hhhHHHHHHHHHHHHHHHHHHHH
Confidence 2 245556667778888888888899999999999999 99999999999998887777655
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.7e-07 Score=81.88 Aligned_cols=162 Identities=17% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccc-ccCCCCCcchhH
Q 012976 26 AKVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFI 104 (452)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~~~r~Grr~~~i 104 (452)
.+..++++..+.+.+..+....+... .+|.+++.-|.|-++.+....++. -.-.-+++..+.|- +.+|+||||.++
T Consensus 26 ~~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWv 102 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWV 102 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhcccccee
Confidence 34445667777778888877777776 888888988888887765543322 12224456666672 344899999998
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (452)
+-+.......+.+ ++.......++. .............+++.+..+....+...+.-.+..+++-| .+......
T Consensus 103 vp~q~llG~~mll--Ls~~v~~~~g~n--g~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lg--yaST~q~V 176 (510)
T KOG3574|consen 103 VPCQYLLGLFMLL--LSYLVDRGLGGN--GGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLG--YASTCQSV 176 (510)
T ss_pred eehHHHHHHHHHH--HhhCCCcccccC--CCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcC--chhHHHHH
Confidence 8554433333332 332221222211 11222223334455666777778888888888888888888 77777777
Q ss_pred HHHHHHHHHHhh
Q 012976 185 FMAVGNILGYAT 196 (452)
Q Consensus 185 ~~~~g~~ig~~~ 196 (452)
+...|.+++..+
T Consensus 177 g~~~GyfL~~~i 188 (510)
T KOG3574|consen 177 GQTAGYFLGNVV 188 (510)
T ss_pred HHhhhHHhhcce
Confidence 777777666544
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-08 Score=95.77 Aligned_cols=134 Identities=13% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 46 GWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
.......+.|.+. +..|.++.+.+++.+...+...++.++.|++.| |+|||+.+.....+..+.+..+......
T Consensus 209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~~~~~~~~~~~~~~~~~~- 283 (377)
T PRK11102 209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVR----RVGALNMLRFGLWIQFIMGIWLVVSALL- 283 (377)
T ss_pred HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3344444556555 678999999999999999999999999999999 9999988776444333333322221100
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHH-HHHHHHHHHhhcc
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF-MAVGNILGYATGS 198 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~~~g~~ig~~~~~ 198 (452)
....+...++..+...+.+.........+.|..| ++++ ++.+..+.. ..+|..+++.+++
T Consensus 284 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 284 -----------DLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAG--TASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred -----------hhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccch--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112223333333334444444555566777766 7788 777776543 4566666666543
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.1e-08 Score=90.53 Aligned_cols=171 Identities=15% Similarity=0.102 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
..+..+=+..........|. .++|++..+..++.....+.++++..++|++.| |+|.|++++++..+..+.++..
T Consensus 260 A~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~----rfg~k~vl~~~lvi~~~~~~~~ 335 (438)
T COG2270 260 ARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDE----RFGSKPVLMIGLVILSIAALYL 335 (438)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCceeehHHHHHHHHHHHHH
Confidence 33343334455555666676 599999999999999999999999999999999 9999988887666555555554
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
+..-.. ..+.+...+.+...|..+..+.++..+.+|+++.+ +.+|+++.....+..+||.+-
T Consensus 336 ~~~~~~----------------~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~--~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 336 IFLEGE----------------LDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEG--RFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred HHcccc----------------HHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcccc--ceeehhhhhhhHHHHHHHHHH
Confidence 432221 22334445667788888999999999999999999 999999999999999999887
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccC
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEV 246 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~ 246 (452)
+...... ++-|..+....++.. ..++.+..+|++
T Consensus 398 ~v~t~iT--------------g~~r~g~~~i~vll~-iGl~~L~~v~~~ 431 (438)
T COG2270 398 AVITQIT--------------GSSRAGVLSIIVLLL-IGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHh--------------cchhhHHHHHHHHHH-hhHhhEEeecCC
Confidence 6622211 245555555544433 334445555554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-09 Score=103.06 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
++++......+...........+.+.|.+ .++ ++.+.+++.++..++..++.+++++++| |+|||+.+..+ ..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~g~~~~~~~~-~~ 295 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVK----KFGRKILFAGG-IL 295 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHH-HH
Confidence 33444444444444444444444444443 344 4566777777888889999999999999 99999887764 44
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccC-------ccccchhhhhhHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTG-------KDHRRTRVANAYF 182 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~r~~~~~~~~~ 182 (452)
..+++.....+.++ ..+...+...+.+++.+...+..+++++|..+ ++++| ...|+.
T Consensus 296 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~~ 359 (437)
T TIGR00792 296 LMVLGYLIFFFAGS--------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEG--LVYSVR 359 (437)
T ss_pred HHHHHHHHHHHcch--------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchH--HHHHHH
Confidence 44444444433211 12344455566677888778888899988875 34456 889999
Q ss_pred HHHHHHHHHHHHhhccc
Q 012976 183 SLFMAVGNILGYATGSF 199 (452)
Q Consensus 183 ~~~~~~g~~ig~~~~~~ 199 (452)
+....+|..+++.+.+.
T Consensus 360 ~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 360 TFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988887
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.6e-08 Score=90.55 Aligned_cols=144 Identities=13% Similarity=0.015 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE---LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+..+...+..+...........+.+.|+++ +|.++.+.+...+.+..+.+++..+.++++| |+|+||.+.+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~----r~g~~~~l~~~- 214 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP----MISQGRYLAFN- 214 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHH-
Confidence 344444444444444556667788999853 5899999999999999999999999999999 99998876654
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
....+++..+....++ ........+.+++.+..+|...+...+..|++ .+ .+.++. ....
T Consensus 215 ~~l~~~~~~l~~~~~~----------------~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~--~asai~-~~~~ 274 (310)
T TIGR01272 215 AFLAVLLSIGAALTHG----------------YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TS--QGSGIL-CLAI 274 (310)
T ss_pred HHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh--hhHHHH-HHHH
Confidence 3334443333332221 11123444677888899999999998888754 34 455554 4566
Q ss_pred HHHHHHHhhccc
Q 012976 188 VGNILGYATGSF 199 (452)
Q Consensus 188 ~g~~ig~~~~~~ 199 (452)
+|+.++|.+.|.
T Consensus 275 ~Gg~i~P~l~G~ 286 (310)
T TIGR01272 275 VGGAIVPLLQGS 286 (310)
T ss_pred hcchHHHHHHHH
Confidence 888888877665
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=97.43 Aligned_cols=148 Identities=11% Similarity=0.101 Sum_probs=86.4
Q ss_pred HHHHH-HHHhCCCchhhHHHHhhhh-hhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH--Hhccccccccc
Q 012976 53 LLTPY-VQELGIPHAWASIIWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL--IGLSADIGWLL 128 (452)
Q Consensus 53 ~~~~~-~~~~g~s~~~~g~~~~~~~-~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~--~~~~~~~~~~~ 128 (452)
+.+++ .++.|.++.+.+++..... ++..++.++.|++.| |+||||.+.....+..+..... ....++
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~----r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~----- 301 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMV----RLGLYRSLMLFGVLQAVSNLGYWVLAVTPK----- 301 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-----
Confidence 33444 4779999999999876554 457888999999999 9999887665444333222222 122111
Q ss_pred CCCCCCCchhHHHHHHHHH----HHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 129 GDRGDFRPRAIAVFVFGFW----ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
..+.+.+... ..+++.+...+....++.+.+|.+++ +..+...++|..+++.++|.+....
T Consensus 302 ---------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~G~l~~~~ 366 (402)
T PRK11902 302 ---------HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQY------ALLSALASVGRVYVGPTSGYLVEAY 366 (402)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122333332 33344444455556666666665444 3344455666665555565522211
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
||+..|.+.+++.++..++.
T Consensus 367 ---------------G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 367 ---------------GWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred ---------------ChHHHHHHHHHHHHHHHHHH
Confidence 89988888877766654444
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-08 Score=96.63 Aligned_cols=140 Identities=15% Similarity=0.035 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 41 GGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
+...........+.|.+++ ..|.++.+.|+......++..++.++.|++.| |+|+|+.+.. +.+...++...+.
T Consensus 269 ~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~-g~~~~~~~~~~l~ 343 (495)
T PRK14995 269 MTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVS----RLGLRLVATG-GMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHH-HHHHHHHHHHHHH
Confidence 3333444555567788875 57999999999999999999999999999999 9999876554 4444444444333
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
..... ...+.......+.|++.+...++....+.+..|+++++ .+.+..+...++|..+|+.+.+.
T Consensus 344 ~~~~~------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 344 MTDFS------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAA--AAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred HhcCC------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcc--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 22110 11123344566778888888888888889999999999 99999999999999999888877
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.4e-07 Score=89.24 Aligned_cols=169 Identities=11% Similarity=0.121 Sum_probs=111.7
Q ss_pred HHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 51 LSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 51 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
...+..|+ +.+|.+++.+..+...+.....+...++|+++|+ ++||+|.++++..+ ..++..+........
T Consensus 7 ~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~---~lG~~~tIl~~~ii-~~lG~~llai~a~~~---- 78 (654)
T TIGR00926 7 RTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADG---WLGKFKTILYLSIV-YVVGHALLSFGAIPS---- 78 (654)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHH-HHHHHHHHHhccCcc----
Confidence 34444454 6789999998888888888888889999999996 78999988875544 444554444321110
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc---cchhhhhhHHHHHHHHHHHHHHhhccccccceec
Q 012976 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH---RRTRVANAYFSLFMAVGNILGYATGSFSGWFKIL 206 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~ 206 (452)
..........+++..+..+|.+..-+...+...|.+++++ |. ..+.+...+.++|++++..+.+++.
T Consensus 79 ---~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~--s~F~~fY~~iNiGSlis~~i~~~l~----- 148 (654)
T TIGR00926 79 ---SGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRS--RFFSFFYFAINAGSLISTIITPILR----- 148 (654)
T ss_pred ---cccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 0111122335566777778999999999999999997653 34 5777777788888888877755521
Q ss_pred ccccccccc-ccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 207 PFTLTSACN-VDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 207 p~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
..... ....+|...|.+.+++.++..++...
T Consensus 149 ----~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 149 ----GDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ----HhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 11000 00026888898887777666555443
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-08 Score=97.94 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
......+...+.......++|.|++ .+|.++.+.++......++..++.++.|++.| |+|||+.+.. +.....+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~-g~~~~~~ 333 (485)
T TIGR00711 259 IGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGD----KIDPRKLVTI-GLILYAV 333 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCcHHHHHH-HHHHHHH
Confidence 3334444445555666678888884 57999999999999999999999999999999 9999887666 4444444
Q ss_pred HHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHH
Q 012976 114 AVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILG 193 (452)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig 193 (452)
+.....+..+. ....+.......+.+++.+...++......+..|+++|+ .+.++.+....+|..+|
T Consensus 334 ~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~g~~ig 400 (485)
T TIGR00711 334 GFYWRAFTFTP-----------DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIA--RGSSLSNFTRQLGGSIG 400 (485)
T ss_pred HHHHHhccCCC-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHh--HHHHHHHHHHHHHHHHH
Confidence 44443321110 111233444566777888877777777888889999999 99999999999999999
Q ss_pred Hhhccc
Q 012976 194 YATGSF 199 (452)
Q Consensus 194 ~~~~~~ 199 (452)
+.+.+.
T Consensus 401 ~~i~g~ 406 (485)
T TIGR00711 401 TALITT 406 (485)
T ss_pred HHHHHH
Confidence 877655
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=105.61 Aligned_cols=161 Identities=15% Similarity=-0.055 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
++...+..+...+.......++|.|+ +.+|.++.+.|++.+...++..++.++.|+++| +.++++.+..+.++..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~----~~~~~~~~~~~~~~~~ 302 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSE----GRITLLYVPIGALLMG 302 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC----CceeeeeehHHHHHHH
Confidence 44444444444555566667888888 568999999999999999999999999999999 7776665554333333
Q ss_pred HHHHHHHhc-cccc---ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 112 AVAVLLIGL-SADI---GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 112 ~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
+....+... .... ..+..-..-......+.+.+..++.|++.+...++..+++.+.+|++.|| +++|..+....
T Consensus 303 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G--~v~g~~~~~~~ 380 (1140)
T PRK06814 303 LFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRA--RVIAANNVLNA 380 (1140)
T ss_pred HHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccce--eeeHHHHHHHH
Confidence 333222211 0000 00000000000012345556677778888888888999999999999999 99999999999
Q ss_pred HHHHHHHhhccc
Q 012976 188 VGNILGYATGSF 199 (452)
Q Consensus 188 ~g~~ig~~~~~~ 199 (452)
+|..+++.+.+.
T Consensus 381 ~~~~ig~~~~g~ 392 (1140)
T PRK06814 381 AFMVAGTIILAL 392 (1140)
T ss_pred HHHHHHHHHHHH
Confidence 999999888776
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.7e-09 Score=97.53 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhCCC-chhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 41 GGIQFGWALQLSLLTPY-VQELGIP-HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
+...+.......+.|.| .+++|.+ ..+.+.+.++..+...++.++.|+++| |+|+|+............. ...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~-~~~ 290 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSD----RFGRRRRLLIAILLLILGA-LGL 290 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHH-HHH
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHHHHHHH-HHH
Confidence 33334556677888888 4889999 789999999999999999999999999 9998776666443333333 333
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
..... ........+...+.|++.+...+...+++.|..|+++|+ ++.|+.+...++|..+||
T Consensus 291 ~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 291 LLLPF------------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRG--TAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CCSHH------------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 22211 111234445666778888888999999999999999999 999999999999999886
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.81 E-value=8e-08 Score=83.72 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.+.+..|-|.+.+++|+|.+|...+.....++..+ .++.|.+.| ++|+|.++++ +.+....++.+.+...+.
T Consensus 18 ~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d----~~gp~~~l~i-G~~~~~~GY~~~~l~~~~-- 89 (250)
T PF06813_consen 18 TYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYD----RFGPWVVLLI-GAVLGFVGYGLLWLAVSG-- 89 (250)
T ss_pred ccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHH----hcchHHHHHH-HHHHHHHHHHHHHHHHhC--
Confidence 34555677777899999999999999999898876 588899999 9999877766 556666677766654332
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
.......|.+.+..++.+.+.+...+.......+.+| ++|| .+.|+.-...++++.+-..+.
T Consensus 90 ------~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG--~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 90 ------RIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRG--TVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred ------ccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccC--ceehhhhHHHHhHHHHHHHHH
Confidence 2222345666666666666666666666677778998 5799 999999999999887765553
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.2e-08 Score=93.84 Aligned_cols=129 Identities=15% Similarity=0.288 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 50 QLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 50 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
...++|.+.++.+.++.+.+++.++..+.......+.+++.|| |++.|+.++. +.+...++..+....++.
T Consensus 227 ~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~-~~~~~~~~~~~l~~~~~~----- 297 (400)
T PRK11646 227 VMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEK---RFRLEHRLMA-GLLIMSLSMFPIGMVSNL----- 297 (400)
T ss_pred HHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchhHHHHH-HHHHHHHHHHHHHHhhhH-----
Confidence 3456788887776678888888887777666555555666662 5555554444 444444444444443322
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+...+...+.+.+.+...+...+++.|..|+++|+ ++.|+.+....+|..+|+.++|+
T Consensus 298 ----------~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 298 ----------QQLFTLICLFYIGSIIAEPARETLSASLADARARG--SYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred ----------HHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccch--hhhhHHHHHHHHHHHhcccchHH
Confidence 33334445566777777778889999999999999 99999999999999999999888
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-08 Score=92.54 Aligned_cols=135 Identities=19% Similarity=0.225 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 45 FGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 45 ~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
........+.|.+. +++|.++.+.+++.+...++..++.++.|+++| |+|||+.+.... ....++..+......
T Consensus 220 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 294 (385)
T TIGR00710 220 GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIK----KWGAKSLLRMGL-ILFAVSAVLLEITAI 294 (385)
T ss_pred HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 34444455667666 578999999999999999999999999999999 999988776643 333333333222111
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH-HHHHHHhhc
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV-GNILGYATG 197 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-g~~ig~~~~ 197 (452)
. .............+.+++.+...+.......|..| ++|+ ++.++.+..... |.+.++.++
T Consensus 295 ~----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~~~g~i~~~~~~ 356 (385)
T TIGR00710 295 L----------GLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAG--TASALFGTLRLVLGAIVGYLVS 356 (385)
T ss_pred h----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00112333444556667777777777888888876 5688 888887766554 555555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-06 Score=78.08 Aligned_cols=311 Identities=12% Similarity=0.010 Sum_probs=167.4
Q ss_pred HhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHH
Q 012976 72 WLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDV 151 (452)
Q Consensus 72 ~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 151 (452)
.++-.....+..++.+.+.| +.|.|..+.+++....+.-...+ +. | -+.++++..+.|+
T Consensus 56 ~aiiY~~ftv~~l~~psiv~----~i~~K~~lv~ga~~y~~f~~gfl-~~-N---------------~y~~yfssallG~ 114 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVN----FLGPKWALVIGATCYAAFPLGFL-FP-N---------------SYYLYFSSALLGF 114 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HhhHHHHHHHHhHHHHHHHHHHH-hc-c---------------hHHHHHHHHHhhh
Confidence 55666667788889999999 99999888775544333332222 21 1 2567788889999
Q ss_pred hhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchh---------
Q 012976 152 ANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLK--------- 222 (452)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~--------- 222 (452)
|.+..+...-.+++|..+++++. +..++.-.....+.++|+..-....... .. ......+.+
T Consensus 115 Gaallw~GqG~ylt~~st~~tie--~Nisi~Wai~~~~li~Ggi~l~~~~~~~------~~-~~~~~~~~~~~~~~~~~~ 185 (461)
T KOG3098|consen 115 GAALLWTGQGGYLTSNSTRETIE--RNISIFWAIGQSSLIIGGIILFIYFQFS------SS-SAIITDGTRRLVFEVLFI 185 (461)
T ss_pred hHHheecccceehhhcCChhhHH--HHHHHHHHHHHHHHHhhhHhheeeeEec------cc-ccccccchhhhhcchhhh
Confidence 99999999999999999999999 8888888888877777765543311111 00 000001111
Q ss_pred --HHHHHHHHHHHHHHHHH--HhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Q 012976 223 --SAFFLDVIFIAITTCIS--ASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTW 298 (452)
Q Consensus 223 --~~f~~~~~~~~~~~~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (452)
....+.++++....+-. ..+.|.+......+ .+ + ....+.++...+.+++ +++..+....+...
T Consensus 186 ~~~i~~~~~v~~~~~~l~~i~~~~~p~~~~~~~~~------~~-~---~~~~~~l~~~~~l~~~--~~ml~L~~~f~~tG 253 (461)
T KOG3098|consen 186 DFEIKVLFGVLLAISVLSIINFDFLPSKDVVNCKS------SS-E---TSFSELLKLTFKLLKT--PKMLLLFPFFFYTG 253 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhheeecCccchhhhhh------hc-c---ccHHHHHHHHHHHhcC--HhHHHHHHHHHHHH
Confidence 01111111211111111 11111111111011 00 0 1244556667777777 66666665555444
Q ss_pred HhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh---hCCchhHHHHHHHHHHH
Q 012976 299 LGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK---WGAGFIWGISNILMALC 375 (452)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr---~g~~~~~~~~~~~~~~~ 375 (452)
..........|..+. +....... ......+..+..+++..+++...+.+.|| +|+++++.++..+..+.
T Consensus 254 ~~~Sf~~~iypt~i~---ft~~~~~n-----~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~ 325 (461)
T KOG3098|consen 254 LETSFWISIYPTCIS---FTRKLGSN-----TTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIG 325 (461)
T ss_pred HHHHHHHhccchhhh---hhhhccCc-----chhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHH
Confidence 322222222222221 11000000 11111222333455566666767776665 57788887777776666
Q ss_pred HHHHHHHHH-hhh--ccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 376 FLAMLILYY-VAI--HMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 376 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
.++...... .++ +++..+ +..........++..+.|++-....+.-+.+++...|++
T Consensus 326 ~~li~l~~p~dap~~~t~~~~--~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~ 385 (461)
T KOG3098|consen 326 FLLIHLSFPNDAPLRPTDSPP--LLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD 385 (461)
T ss_pred HHHHhccccccCCCCCCcccc--cccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 655544321 110 111101 111113456777888999999999988899999988554
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-08 Score=91.15 Aligned_cols=143 Identities=11% Similarity=0.083 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhh-hhhhhcccccccccccccCCCCCcchhHHHHHHHH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISI 111 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~-~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~ 111 (452)
.+...+..+...........+.|.|++++|.++.+.+.+..+.. +...++.+++|+++| |+|||+.++....+ .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~----r~g~~~~l~~~~~~-~ 285 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQ----PLNILYALLLFGIV-Q 285 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHH-H
Confidence 44444444445566677778899998779999999998887655 567788999999999 99998887764444 3
Q ss_pred HHHHHHHhcc-cccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 112 AVAVLLIGLS-ADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 112 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.+...+..+. .+.. . . +......+.......+.+++.+...+...+++.|.+|+++|+ +.+|+.+...+
T Consensus 286 ~~~~~~~~~~~~~~~-~--~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~ 355 (356)
T TIGR00901 286 ALTNAGFVWLASNGH-H--D--GITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGA--TQMALLSSLSA 355 (356)
T ss_pred HHHHHHHHHHHhcCc-c--c--ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHh
Confidence 3333332221 1100 0 0 000012344555666778888889999999999999999999 88888776554
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=90.63 Aligned_cols=136 Identities=10% Similarity=-0.048 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
.......+.|.+.++.|.++.+.++......++..++..+.+++.| |+|+|+..........+....+......
T Consensus 218 ~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~----r~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 291 (401)
T PRK11043 218 AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQ----KWGGEQLLPWLLVLFAVSVIAIWLASLL-- 291 (401)
T ss_pred HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 3344456778888889999999998887777788888888899999 9998876543222222211111111100
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.. ...+...+...+.+++.+...+...+...|..| ++++ ++.++.+.....+...++.+.+.
T Consensus 292 -------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 292 -------SH--PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATG--KAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred -------cc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccCh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011233344555667777777777777777776 5788 89999998877777777766655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=84.71 Aligned_cols=137 Identities=9% Similarity=0.045 Sum_probs=90.8
Q ss_pred hhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhh
Q 012976 74 CGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVAN 153 (452)
Q Consensus 74 ~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 153 (452)
+..+..+-+.++.+++.| |+|||+++... .+.+.+..+......+. .....+++.++ ++.
T Consensus 389 itslaefPGlLIt~~ive----rlGRKkTMal~-l~~f~iflfll~~c~~r-----------n~~tvllf~ar----afi 448 (528)
T KOG0253|consen 389 ITSLAEFPGLLITGVIVE----RLGRKKTMALS-LILFGIFLFLLTTCKTR-----------NAYTVLLFTAR----AFI 448 (528)
T ss_pred HHHHhhCCchhHHHHHHH----HhcchhHHHHH-HHHHHHHHHHHHHhcCc-----------chhHHHHHHHH----HHH
Confidence 445667788889999999 99999998774 44444444443333221 12223344445 455
Q ss_pred hhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHH
Q 012976 154 NMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIA 233 (452)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~ 233 (452)
.+.+.+.++|.+|.+|...|+ .+.|..+.+..+|+++.|.++-.... .......+.+.+++
T Consensus 449 sg~fqvaYvYtPEVyPTavRa--tgvGtcSsmaRIggI~~p~iA~~~e~-----------------s~sl~i~vy~~~~i 509 (528)
T KOG0253|consen 449 SGAFQVAYVYTPEVYPTAVRA--TGVGTCSSMARIGGIFSPVIAMRAEL-----------------STSLPIFVYGALFI 509 (528)
T ss_pred hchheEEEEecCcccchhhhh--cchhhhhhHHhhhhhhhhHHHHHhcc-----------------ceeehHHHHHHHHH
Confidence 566677889999999999999 88999999999999999988733221 11223445555666
Q ss_pred HHHHHHHhccccCCCC
Q 012976 234 ITTCISASAAHEVPLG 249 (452)
Q Consensus 234 ~~~~~~~~~~~e~~~~ 249 (452)
+..+...++.-|++.+
T Consensus 510 lagIavcffPiEtkGR 525 (528)
T KOG0253|consen 510 LAGIAVCFFPIETKGR 525 (528)
T ss_pred HHHHHheeeeeccCCC
Confidence 6666666666666543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=92.05 Aligned_cols=150 Identities=23% Similarity=0.237 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+....+....+...+.........+.|.+. +|.+ ...+.+..+..+...++.+++++++| |+|+||.+..+..+
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~----r~gk~~~~~~~~~~ 299 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSK----RFGKKKVYIIGLLL 299 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHH----HccceeehhhhHHH
Confidence 344445555555566666666677777644 5555 66778888888999999999999999 99999988875444
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc-----cchhhhhhHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-----RRTRVANAYFSL 184 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~ 184 (452)
.+.+.....+.+. ...+..++...+.+++.+.......++++|..+.++ |..+..++..+.
T Consensus 300 -~~~~~~~~~~~~~-------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~ 365 (428)
T PF13347_consen 300 -AALGFLLLFFLGP-------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSF 365 (428)
T ss_pred -HHHHHHHHHHHHh-------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhh
Confidence 4444444444320 123666777888889999999999999999987432 333388899999
Q ss_pred HHHHHHHHHHhhccc
Q 012976 185 FMAVGNILGYATGSF 199 (452)
Q Consensus 185 ~~~~g~~ig~~~~~~ 199 (452)
...+|..+++.+.+.
T Consensus 366 ~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 366 FIKIGQGLAGAIVGL 380 (428)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999888887776
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=88.69 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=48.4
Q ss_pred HHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 51 LSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 51 ~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
..+.|.+. +++|.++.+.+.+.+...+...++.++.|++.| |+|||+.++++. +....+.....
T Consensus 223 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~----r~g~~~~~~~~~-~~~~~~~~~~~ 287 (392)
T PRK10473 223 VNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALG----IFKPRTLMLTSQ-VLFLAAGITLA 287 (392)
T ss_pred HHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCHHHHHHHHH-HHHHHHHHHHH
Confidence 34445555 678999999999999999999999999999999 999998777643 33444444433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.4e-07 Score=87.42 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=92.0
Q ss_pred HHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccccc
Q 012976 50 QLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLL 128 (452)
Q Consensus 50 ~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
.....+.+. +.+|.++.+.|++.+...++..+++++.+++.| |.++|+.+.. +.... .......+.++
T Consensus 224 ~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~----~~~~~~~~~~-g~~~~-~~~~~~~~~~~----- 292 (393)
T PRK11195 224 LRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVT----LETVLRVLPA-GILMG-LVVLLMALQHS----- 292 (393)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccchHHH-HHHHH-HHHHHHHHHhH-----
Confidence 334555666 568999999999999999999999999999999 8888876655 33322 22222222221
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc-cchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.+...+...+.|++.+...++..+.+.|..|++. ++ ++.+..+...++|..++..+.+.
T Consensus 293 ----------~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g--~~~a~~~~~~~~~~~~~~~~~~~ 352 (393)
T PRK11195 293 ----------LLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAG--HSIAVQNFNENLAMLLMLGLYSL 352 (393)
T ss_pred ----------HHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccch--hHHHHHhHHHHHHHHHHHHHHHH
Confidence 2344455556778888777888888888766554 67 89999999999999999877665
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2e-07 Score=79.57 Aligned_cols=323 Identities=15% Similarity=0.151 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccccc
Q 012976 47 WALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGW 126 (452)
Q Consensus 47 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~ 126 (452)
.....+|+-...+.+|+...++|.+..+..-..++...+.|.++| |.||||..+..+.. .+.+.+ .=.+
T Consensus 53 DWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaD----kqGRKracvtycit-YiLsCi-TKhS----- 121 (454)
T KOG4332|consen 53 DWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLAD----KQGRKRACVTYCIT-YILSCI-TKHS----- 121 (454)
T ss_pred hhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHh----hhccccceeeehHH-HHHHHH-hhcC-----
Confidence 344445554445889999999999888888888899999999999 99999977654332 222222 1122
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHH-hhhccCccccchhhhhhH----HHHHHHHHHHHHHhhccccc
Q 012976 127 LLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRAL-LADLTGKDHRRTRVANAY----FSLFMAVGNILGYATGSFSG 201 (452)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~----~~~~~~~g~~ig~~~~~~~~ 201 (452)
..+-.+++++.+-|+..+......-++ +.|.. ++|+ .-.-+ ++=...+|+-+-.+++|...
T Consensus 122 ----------pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHn--ekr~--FeqqWls~TFskA~ffgNglvAiiaGlfg 187 (454)
T KOG4332|consen 122 ----------PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHN--EKRG--FEQQWLSVTFSKAVFFGNGLVAIIAGLFG 187 (454)
T ss_pred ----------CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhh--hccC--ChHhhhhHHHHHHHHhhccHHHHHHHHHH
Confidence 223566788988888888777776554 55654 2333 11111 11111123222222222200
Q ss_pred cceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHHHHH----
Q 012976 202 WFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELF---- 277 (452)
Q Consensus 202 ~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 277 (452)
..+.++ ..-|.-..|-..++...+...+.+--..|.-.++.++ ++..++.+
T Consensus 188 -----n~lvd~----~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~----------------kdlltqf~gaa~ 242 (454)
T KOG4332|consen 188 -----NLLVDT----FSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN----------------KDLLTQFKGAAR 242 (454)
T ss_pred -----HHHHHH----hccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh----------------HHHHHHhhHhHH
Confidence 000111 1113333454444444444444444444443333221 22222222
Q ss_pred HHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 012976 278 GTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCR 357 (452)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~d 357 (452)
....+ ++...+-.+.-+.-...+.+....++-+ +|... +..-+ +...-+.++..+++-+..++..
T Consensus 243 aiaSD--~ki~LLG~iqsLFE~smytFVFLWTPaL-------spn~e-----~iPhG-fiFatFMlASmLGSSla~Rl~s 307 (454)
T KOG4332|consen 243 AIASD--EKIALLGAIQSLFEGSMYTFVFLWTPAL-------SPNDE-----EIPHG-FIFATFMLASMLGSSLASRLLS 307 (454)
T ss_pred HHhcc--hHHHHHHHHHHHHhhhhheeeeeecccC-------CCCcc-----cCCch-hHHHHHHHHHHHhhHHHHHHHh
Confidence 22233 4444433333332222222111111111 11111 11222 2222356667777777777776
Q ss_pred hhCCc--hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 358 KWGAG--FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 358 r~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
|-..| ..+.+.+.+.++.+.+........ |...+....++.+.++-.+.|..++...-+=++++|++.
T Consensus 308 ~s~~~ve~ymqivf~vs~a~l~Lpilt~~vs----------P~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea 377 (454)
T KOG4332|consen 308 RSSPKVESYMQIVFLVSIAALLLPILTSSVS----------PSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA 377 (454)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHhccC----------CCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH
Confidence 65443 356666666666655544443211 211133334555556666667777777778888999887
Q ss_pred Ccccceeeeeeeee
Q 012976 436 LGQGGHFYGLYVYK 449 (452)
Q Consensus 436 ~g~g~~~g~~n~~~ 449 (452)
|. +++|.|+
T Consensus 378 rs-----timNfFR 386 (454)
T KOG4332|consen 378 RS-----TIMNFFR 386 (454)
T ss_pred Hh-----hhhhhee
Confidence 63 4455554
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=91.04 Aligned_cols=133 Identities=12% Similarity=0.081 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHHH-H-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 42 GIQFGWALQLSLLTPYV-Q-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
...........+.+.|+ + ..|.++.+.++....+.++..++.++.|++.| |+||||.+.....+ .+....+..
T Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~----r~g~~~~l~~~~~~-~~~~~~~~~ 343 (438)
T PRK10133 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYALI-AMALCLISA 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHH-HHHHHHHHH
Confidence 33334444455677774 4 57999999999999999999999999999999 99999887664333 333333332
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+.++ ........+.+++.+..+|...+...|..+++ .+ .+.++... ..+|+.+++.+.+.
T Consensus 344 ~~~~----------------~~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~--~as~l~~~-~~~g~~~~~~i~G~ 403 (438)
T PRK10133 344 FAGG----------------HVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIVM-TIIGGGIVTPVMGF 403 (438)
T ss_pred HcCC----------------hHHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hc--cchhHHhH-HhccchHHHHHHHH
Confidence 2211 01234456678899999999999999998754 45 56666653 44566666666555
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.8e-06 Score=78.67 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--hCCCchhhHHHHhhhhhhhhhccccccccccc-ccCCCCCcchhHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYVQE--LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-CTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~~~r~Grr~~~i~~~~~~~~ 112 (452)
+.+.++.++...+....-+|.++++ -+.|-++.+....+.. . .-.-+++..+.|- +.+|+||||.+++-.-.+..
T Consensus 5 L~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~-P-fSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 5 LVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASY-P-FSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred HHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeec-h-hHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 4445555555555555677888877 6788888765433211 0 0113345555563 23599999999986555444
Q ss_pred HHHHHHhccccccccc---CC----CCCCC--chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH
Q 012976 113 VAVLLIGLSADIGWLL---GD----RGDFR--PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~---~~----~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (452)
+.++.....-+-.... .| .+... ......+....+++-+..+....+...+.-.+..++.++ .+.....
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~--~ASTcqt 160 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVG--YASTCQT 160 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcc--hHHHHHH
Confidence 4433333222100000 00 00111 111122233333444555666777777777778888888 8777777
Q ss_pred HHHHHHHHHHHhh
Q 012976 184 LFMAVGNILGYAT 196 (452)
Q Consensus 184 ~~~~~g~~ig~~~ 196 (452)
.+.+.|..++..+
T Consensus 161 vG~~~Gyfls~tv 173 (544)
T PF13000_consen 161 VGQTAGYFLSFTV 173 (544)
T ss_pred hHhhhhHHHHHHH
Confidence 7777777776544
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-05 Score=76.22 Aligned_cols=306 Identities=14% Similarity=0.032 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CchhhHHHHhhhhhhhhhc-ccccccccccccCCCCCcchh
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQELGI-----PHAWASIIWLCGPVSGLFV-QPLVGHFSDRCTSRFGRRRPF 103 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~~~~~i~-~~~~G~l~Dr~~~r~Grr~~~ 103 (452)
.++++......++..+.++ .+=+.-|++.. +...+.++-+...+...+. .++.+++++ |++|++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~----~~~~~~lf 77 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSN----ILSKEALF 77 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHhH
Confidence 3455555555555544444 33344566555 3456777777666655555 889999999 99999877
Q ss_pred HHHHHHHHHHHHHHHhcc--cccccccCCC-----CCCCc--h-------hHHHHHHHHHHHHHhhhhcch-hHHHHhhh
Q 012976 104 IVCGAISIAVAVLLIGLS--ADIGWLLGDR-----GDFRP--R-------AIAVFVFGFWILDVANNMTQG-PCRALLAD 166 (452)
Q Consensus 104 i~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~~~--~-------~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 166 (452)
-+.... .+..+.++.+. ++.....++. ....+ . ..|...+......+....... ..++..+|
T Consensus 78 ~~~~~~-F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fand 156 (472)
T TIGR00769 78 YTVISP-FLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQ 156 (472)
T ss_pred HHHHHH-HHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 553322 22222222221 1110000000 00000 0 122222333333344444454 67999999
Q ss_pred ccCccccchhhhhhHHHHHHHHHHHHHHhhccccc-cceeccccccccccccccchh----HHHHHHHHHHHHHHHHHHh
Q 012976 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSG-WFKILPFTLTSACNVDCANLK----SAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~ 241 (452)
.++.++-. |..++.+.+.++|.++++.+..+.. ....+|.-. +.|. ..+.+.++.+ ++.+.+.+
T Consensus 157 i~t~~qak--Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~i~~~~~-~~~~~~~~ 225 (472)
T TIGR00769 157 ITTIDEAK--RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGV--------DGWHVSLKNLMVIVICSG-LAIILLYW 225 (472)
T ss_pred cCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--------ChHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 99999988 9999999999999999987766521 111011110 1332 2223333333 33333333
Q ss_pred ccccCCCCCCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCC
Q 012976 242 AAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEP 321 (452)
Q Consensus 242 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (452)
.+.+....+++..+.+ +++++++.+....+.++..++. |-++.+++..++...+...+..-....+ .+.+ .++
T Consensus 226 ~l~~~~~~~~~~~~~~---~~~~k~k~k~~~~es~k~i~~S--~yL~~ia~~vi~y~~~~nlve~~~k~~v-~~~~-p~~ 298 (472)
T TIGR00769 226 WVNRNVLTDPRSYNPA---LKEKKVKPKMSTMESLKFLVSS--PYILDLALLVIAYGISINLVEVTWKSKL-KAQY-PSP 298 (472)
T ss_pred HHHhcccCCccccchh---hccccCCCCCCHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHC-CCH
Confidence 3322221111100000 0111111233445667777777 7777777666665554333332222222 1222 122
Q ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHH
Q 012976 322 NEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGIS 368 (452)
Q Consensus 322 ~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~ 368 (452)
.+... -.+.+.. ..++..++..++.+++.+|+|-+....+.
T Consensus 299 ~~~~~-----f~g~~~~-~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~ 339 (472)
T TIGR00769 299 NEYSA-----FMGDFST-WTGVVSVTMMLLSGNVIRKYGWLTAALIT 339 (472)
T ss_pred HHHHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 11111 1122222 23444555566669999999987655443
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=87.92 Aligned_cols=185 Identities=10% Similarity=0.090 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQEL----GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
+.++.|.+.+...+....+...-...+.|...+ +.++...|.++++..+..++...+..++.+ |+|.|+.++
T Consensus 218 k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~----rig~k~~Ll 293 (412)
T PF01306_consen 218 KMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLIN----RIGAKNLLL 293 (412)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHH----hcChHhHHH
Confidence 445666666655555445555544455555443 344466899999999999999999999999 999999888
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FS 183 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~ 183 (452)
+.+. .+.+=....++.++. +...+...+.++-.........-++++.+|++..+ +...+ .+
T Consensus 294 lag~-i~~iRi~~~~~~~~~---------------~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsA--t~y~v~~~ 355 (412)
T PF01306_consen 294 LAGV-IMAIRIIGSGFATNP---------------WVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSA--TLYLVGFQ 355 (412)
T ss_dssp HHHH-HHHHHHHHHHT--SH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHH--HHHHHHHT
T ss_pred HHHH-HHHHHHHHHhhhcch---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHH--HHHHHHHH
Confidence 8554 466667777776664 66777888888888888888999999999988776 55555 35
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (452)
...++|..+.+.++|....+. |.+..|++.+.+.+...++..+.++++++..
T Consensus 356 ~~~~~~~~i~s~~~G~lyd~~---------------G~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 356 FAKQIGIIILSPLAGYLYDRI---------------GFQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred HHHHHHHHHHhhhHHhhHhhc---------------CcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 677888888887777633222 8888999998888888888888777655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5.1e-08 Score=94.91 Aligned_cols=148 Identities=18% Similarity=0.175 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
.++......+.............+.|. +.+|.++...++......+...++.++.++++| |+|+|+.+.++. +.
T Consensus 229 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~----r~g~~~~~~~g~-~~ 303 (448)
T PRK09848 229 PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVA----RIGKKNTFLIGA-LL 303 (448)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCcHHHHHHHH-HH
Confidence 344444444444444455555555565 456776655555444445667788999999999 999998887744 44
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc-------cchhhhhhHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-------RRTRVANAYFS 183 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------r~~~~~~~~~~ 183 (452)
.+++.....+.+. ...+...+...+.++|.+...+...++.+|..+.++ +| ...+..+
T Consensus 304 ~~i~~~~~~~~~~-------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G--~~~~~~~ 368 (448)
T PRK09848 304 GTCGYLLFFWVSV-------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEG--LTYSLFS 368 (448)
T ss_pred HHHHHHHHHHcCc-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchh--HHHHHHH
Confidence 4444444433221 112444455667788888888888999999887543 46 8889999
Q ss_pred HHHHHHHHHHHhhccc
Q 012976 184 LFMAVGNILGYATGSF 199 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~ 199 (452)
....+|..+|+.+.+.
T Consensus 369 ~~~klg~aig~~i~g~ 384 (448)
T PRK09848 369 FTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888776
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=88.66 Aligned_cols=137 Identities=19% Similarity=0.224 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIA 112 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~ 112 (452)
+......+...........+.|.|. +.+|.++.+.+.+.++..+...++.++.|+++| |+|||+.+..... ...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~g~~~~~~~~~~-~~~ 302 (366)
T TIGR00886 228 WILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISD----RLGGARKLLMSFL-GVA 302 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHH----hhccchhHHHHHH-HHH
Confidence 3333333333334455567788887 567999999999999999999999999999999 9999887665433 333
Q ss_pred HHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 113 VAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
.+..+....... . .......+...+..++.+...+...++++|..| ++++ .+.|+.+...++|
T Consensus 303 ~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g--~~~g~~~~~~~~g 365 (366)
T TIGR00886 303 MGAFLVVLGLVS--------P---LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATG--AVSGLVGAIGNLG 365 (366)
T ss_pred HHHHHHHhcCCC--------c---chHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcc--cHHHHHHHhccCC
Confidence 333333221110 0 012333333444445566666777888888887 5788 8888877766654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-07 Score=89.64 Aligned_cols=146 Identities=14% Similarity=-0.015 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCC----CCCcchhH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR----FGRRRPFI 104 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r----~Grr~~~i 104 (452)
..++|..++..++.....+....++|.++++ .|.+..+.+.+...+.++++++.++.|+++| | ..+|...+
T Consensus 272 dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsd----r~~~~~~~~~~~~ 347 (495)
T KOG2533|consen 272 DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSD----RLKTIFARRLLFI 347 (495)
T ss_pred chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHH
Confidence 3457778888888888888899999999977 6699999999999999999999999999999 7 55665555
Q ss_pred HHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH
Q 012976 105 VCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL 184 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 184 (452)
....+....+...+...... ............+.....+......++...++.|... ..+....
T Consensus 348 ~~~~~~~~~g~~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~-~~~~~i~ 411 (495)
T KOG2533|consen 348 VFLCLYAIIGAISLLAAAVL---------------PGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALT-TVSAIID 411 (495)
T ss_pred HHHHHHHHHHHHHHHhhccc---------------hHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHH-HHhhhhc
Confidence 55555555554444332211 1111111111233444455667778888777766633 3444444
Q ss_pred HHHHHHHHHHh
Q 012976 185 FMAVGNILGYA 195 (452)
Q Consensus 185 ~~~~g~~ig~~ 195 (452)
+.+.++.+++.
T Consensus 412 ~~~s~~~~~~~ 422 (495)
T KOG2533|consen 412 GTGSAGAISGQ 422 (495)
T ss_pred chhHHHHhhhh
Confidence 44444444443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-06 Score=80.77 Aligned_cols=79 Identities=22% Similarity=0.347 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh
Q 012976 40 AGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG 119 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~ 119 (452)
++..........+.++.|.+++|+++.+.|.+...-.+..+++.|++|.++| |+.+||++++++.+......+++.
T Consensus 20 ~~~~~~~~g~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Ad----r~r~~r~lllgsl~~~v~a~fll~ 95 (618)
T KOG3762|consen 20 YLFFGARFGSLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLAD----RYRKRRPLLLGSLLLSVTATFLLV 95 (618)
T ss_pred eeeeeecccccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHH----HHHhcCchhHHHHHHHHHHHHhee
Confidence 3333445667788999999999999999999999999999999999999999 888888888888777776666665
Q ss_pred ccc
Q 012976 120 LSA 122 (452)
Q Consensus 120 ~~~ 122 (452)
+.+
T Consensus 96 fv~ 98 (618)
T KOG3762|consen 96 FVP 98 (618)
T ss_pred ecc
Confidence 543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.2e-07 Score=87.70 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=78.1
Q ss_pred hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHH
Q 012976 66 AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFG 145 (452)
Q Consensus 66 ~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (452)
...+.+.....+...++.+++++++| |+|+|+.+..+.....+....+....++ ..+.+.+.
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gk~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 325 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLG----KFDRVRAFKWTIVAFVILSALIFFIPPS--------------NVWLIFAL 325 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHHHhCcc--------------hHHHHHHH
Confidence 34445555666777788899999999 9999988876443333233322222111 12444556
Q ss_pred HHHHHHhhhhcchhHHHHhhhccCccc-----cchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 146 FWILDVANNMTQGPCRALLADLTGKDH-----RRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 146 ~~~~g~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
..+.+++.+...+..+++++|..+.++ |..+...+..+....+|..+|+.+++.
T Consensus 326 ~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 326 NILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888888889999999886322 111266788888889999999988877
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-07 Score=92.39 Aligned_cols=154 Identities=10% Similarity=0.019 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
+.++.+....+...........+.+.|.+....++...+.+.++..+...++.+++++++| |+|+|+.++++..+
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~----r~gkk~~~~~~~~~- 305 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVK----SLSRRILWAGASIF- 305 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCcHHHHHHHHHH-
Confidence 3444444444444455555555555454444345566677777777888899999999999 99999988764433
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-----cccchhhhhhHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLF 185 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~ 185 (452)
.+++.+......-. . ....+.+++...+.+++.+...+...++++|..+. .+|..+..++.....
T Consensus 306 ~~~~~~~~~~~~~~--------~--~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~ 375 (473)
T PRK10429 306 PVLSCGVLLLMGLA--------A--PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMV 375 (473)
T ss_pred HHHHHHHHHHHhcc--------C--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHH
Confidence 33222222211000 0 11124445555667788888888889999999663 233333688999999
Q ss_pred HHHHHHHHHhhccc
Q 012976 186 MAVGNILGYATGSF 199 (452)
Q Consensus 186 ~~~g~~ig~~~~~~ 199 (452)
.-+|..+++.+.++
T Consensus 376 ~K~~~al~~~i~g~ 389 (473)
T PRK10429 376 VKGGSAFAAFFIGV 389 (473)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888877
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.3e-07 Score=82.71 Aligned_cols=195 Identities=13% Similarity=0.055 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHH--------HHhhhh-hhhhhcccccccccccccCCCCCcch
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASI--------IWLCGP-VSGLFVQPLVGHFSDRCTSRFGRRRP 102 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~--------~~~~~~-~~~~i~~~~~G~l~Dr~~~r~Grr~~ 102 (452)
+++..+...|...+.++....+...+++.+|..+.+... ...+.. .....+-++..+++| +.|||+.
T Consensus 305 ~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id----~iGRk~i 380 (538)
T KOG0252|consen 305 HLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFID----IIGRKYI 380 (538)
T ss_pred HHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEee----hhhhHHH
Confidence 344445556666677777777888888888876543222 222222 233346777888999 9999987
Q ss_pred hHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHH
Q 012976 103 FIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF 182 (452)
Q Consensus 103 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 182 (452)
.+. +..++.+..+.+....+. . ...........+..++ +.-+.......+.+|.+|.+.|+ ...|+.
T Consensus 381 q~~-GF~~~~i~~~~~~~~y~~--~-----~~~~Gf~v~y~l~~ff---~NFGPn~ttfivpaE~FParvR~--t~hGIs 447 (538)
T KOG0252|consen 381 QLM-GFFIMTIFFFVIAGPYNQ--L-----ENTIGFVVLYSLTFFF---GNFGPNATTFIVPAEIFPARVRS--TCHGIS 447 (538)
T ss_pred HHh-hHHHHHHHHHHHcCCccc--c-----cccCceeehHHHHHHH---HhcCCCceeEEeehhhchHHHhh--hhhhHH
Confidence 776 455455444445444331 0 1111112222222222 22233445567889999999999 999999
Q ss_pred HHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCC
Q 012976 183 SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQS 254 (452)
Q Consensus 183 ~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 254 (452)
.+..-.|+++|...-..+..+. +|. ..+.+..+++.+.+..+..++. +++||++.+..++.
T Consensus 448 AA~GK~GAivg~~~F~~~t~~~-yp~---------~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei 508 (538)
T KOG0252|consen 448 AASGKAGAIVGAFGFLYLTDHN-YPP---------NIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEI 508 (538)
T ss_pred HHhccchHHHHHHHhhHhhhcc-CCc---------cccchHHHHHHHHHHHHhHhee-EEeecccccCHHHh
Confidence 9999999999877655433322 221 1378889999888877665554 45678887665544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.8e-06 Score=82.51 Aligned_cols=134 Identities=13% Similarity=0.043 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccccc
Q 012976 46 GWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADI 124 (452)
Q Consensus 46 ~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~ 124 (452)
.........+.+.+ .+|.++.+.+++.....++..++.++.+++.| |++++......................
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (394)
T PRK11652 222 GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK----RFSTLMWQSVICCLLAGLLMWIPGWFG-- 295 (394)
T ss_pred HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33344445566664 48999999999888888888888888888989 777332222212221111111111110
Q ss_pred ccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 125 GWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
....+.......+.+++.+...+...++..|..| ++++ .+.++.+....+|..+++.+++.
T Consensus 296 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g--~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 296 -----------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAG--TAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred -----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccch--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344555667778888888888888889887 5678 88999999999999999988776
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.5e-06 Score=85.12 Aligned_cols=125 Identities=9% Similarity=0.048 Sum_probs=89.4
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh-hCCc
Q 012976 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK-WGAG 362 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~~ 362 (452)
||.++.++...+...++++....+.+.|+.+++ +.+. .........+.....+..+++|+++|| +|||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l-g~~~----------~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r 81 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQL-GFSQ----------EQAFITFGAFAALVYGLISIGGYVGDHLLGTK 81 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCH----------HHHHHHHHHHHHHHHHHHhhHHHhhhhccchH
Confidence 477888888888888888888888888885432 2111 111222223444455666799999999 9999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
+++.++.++..++.+.+.+.. . .....++...+.|++.+...+...+++.|.+|+++
T Consensus 82 ~~~~~g~~~~~~g~~~~~~~~--------------~--~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~ 138 (489)
T PRK10207 82 RTIVLGAIVLAIGYFMTGMSL--------------L--KPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKD 138 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--------------c--chhHHHHHHHHHHhccccccCCHHHHHHHhcCCCc
Confidence 999999999999888777653 0 12223355667788888888888899999998875
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-07 Score=64.18 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 37 ASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
...++......+...+++|.+.++.|+++.++|.+.++..+...++.|++|+++| |++++|..+..+.
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laD----k~~~~~~~l~~~~ 73 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLAD----KFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCccHHHHHHHH
Confidence 3344454456778889999999999999999999999999999999999999999 9999988776443
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=82.26 Aligned_cols=163 Identities=13% Similarity=0.082 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH
Q 012976 39 VAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI 118 (452)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~ 118 (452)
..+...++.....+++--.+++.|..+...|.....-..+-.+.-++.+++.. |+|+-+++.+ ++....+-++.+
T Consensus 379 ~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~----kiGHv~v~~l-gLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 379 VAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIE----KIGHVNVMYL-GLACNVGRFLYY 453 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHH----Hhcccceeee-hhhHHHHHHHHH
Confidence 33444556666667776677999988888887777777777788888899999 9999998877 455555666666
Q ss_pred hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHH-HHHHHHHHHHhhc
Q 012976 119 GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSL-FMAVGNILGYATG 197 (452)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~g~~ig~~~~ 197 (452)
...+|. |..+-.-.+.++..+..+.+..+++++..|++.|. .+.++... ..++|--+|+++|
T Consensus 454 S~L~n~---------------W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~a--t~Q~l~~g~f~GlG~g~GslIG 516 (618)
T KOG3762|consen 454 SYLQNP---------------WMVLPIEILQGITHALIWAAIISYASHVAPPGLRA--TAQGLLQGIFHGLGKGLGSLIG 516 (618)
T ss_pred HHhcCc---------------hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchH--HHHHHHHHHhcccCcchhhhhh
Confidence 666554 55666778889999999999999999999999999 77776554 4577888888888
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHH
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCI 238 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 238 (452)
|...... +-+..|.+.++.+++.+++
T Consensus 517 G~~v~~f---------------g~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 517 GFVVERF---------------GARTTFRIFGIACLVTLAL 542 (618)
T ss_pred hhhheee---------------hhHHHHHHHHHHHHHHHHH
Confidence 8733322 7777888877666655444
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-09 Score=103.88 Aligned_cols=174 Identities=11% Similarity=-0.019 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHH--hcccccc
Q 012976 48 ALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLI--GLSADIG 125 (452)
Q Consensus 48 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~--~~~~~~~ 125 (452)
.....+.+.+.++.|.++. -.......+...++.++...+.| |+|||+.++.+.....++...+. ......
T Consensus 270 ~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~----~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~- 342 (451)
T PF00083_consen 270 NFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLID----RFGRRKLLIIGLLLMAICSLILGIIFFLGVS- 342 (451)
T ss_pred ccccccccccccccccccc--ccccccccccccccccccccccc----ccccccccccccccccccccccccccccccc-
Confidence 3444556666677887776 22223444556667777789999 99999888775444333333321 111000
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhh-hcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANN-MTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
........ .++...+...+.+ ...+..+.+.+|.+|.+.|. ++.++......+++.+++.+...
T Consensus 343 -------~~~~~~~~-~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~--~~~~~~~~~~~i~~~i~~~~~~~----- 407 (451)
T PF00083_consen 343 -------SSSWWSIL-SIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRS--TGIGLSYAVGRIGGFIIPFLFPY----- 407 (451)
T ss_pred -------cccccccc-cceeeeeccccccccccccccccccccccccccc--ccccccccccccccccccccccc-----
Confidence 10000111 1111222222223 23345568889999999999 88888887777777776655333
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (452)
+.+.. +....+.+.++++++..++.++++||++.+..+|
T Consensus 408 ----~~~~~------~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 408 ----LFNNL------GGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE 446 (451)
T ss_pred ----ccccc------cccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence 22221 2234456666677777778889999998765443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=6e-06 Score=79.92 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCc
Q 012976 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 362 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~ 362 (452)
|+.++.++...+...++++.+..+.+.|+.+. ++.++ ..+......+.....++.+++|+++||+ |||
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~-lgls~----------~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr 76 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQ-LKYDD----------NHAYELFSAYCSLVYVTPILGGFLADKVLGNR 76 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH
Confidence 36777777777777778888888899988543 22211 1122233345566677889999999999 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccc
Q 012976 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESL 434 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 434 (452)
+++.++.++.+++.+++.... . ......+...+..++.+...+...++++|.+|++
T Consensus 77 r~iliG~il~~lg~lll~~~~----~------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~ 132 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE----I------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPT 132 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----c------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCC
Confidence 999999999888876554321 0 1111223333444555555566678899999876
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.33 E-value=1e-05 Score=79.10 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCc----hhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchh-HHHHHHHHHHH
Q 012976 42 GIQFGWALQLSLLTPYV-QELGIPH----AWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF-IVCGAISIAVA 114 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~g~s~----~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~-i~~~~~~~~~~ 114 (452)
.....+....+.++.+. ++.+.+. ...+++.++..+...+.+|+..++-.|..+| .+.+... +..+.++..++
T Consensus 283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~ 362 (475)
T TIGR00924 283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS 362 (475)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 33344444555566666 3344332 1267888888888888888755432211114 2333322 13355555555
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
+....+..... + .....+.++++....+.++|.....+...+++.|..|++.|+ +.+|+......+|..+++
T Consensus 363 ~~~~~~~~~~~----~--~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g--~~~g~~~l~~~~g~~l~~ 434 (475)
T TIGR00924 363 FLTFAASIWFA----D--AGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMG--QMLGMWFLAQAMGSLLGG 434 (475)
T ss_pred HHHHHHHHhhc----C--CCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 55544321110 0 112345677888889999999999999999999999999999 999999999999999998
Q ss_pred hhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 012976 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (452)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (452)
.+....... .+|...|...+++.++..++.++..
T Consensus 435 ~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (475)
T TIGR00924 435 YLATFGAVP---------------QGVTGVFGKIGLVTLLVGVVMALMV 468 (475)
T ss_pred HHHHHHhcc---------------cchhhHHHHHHHHHHHHHHHHHHHH
Confidence 776542111 2566667666666665555554433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1e-05 Score=76.57 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAIS 110 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~ 110 (452)
.+..+....+...............|. ..+|.++.+.............++.+++..+++ |+|+|+.+.++..+.
T Consensus 237 p~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~----~~gkk~~~~~~~~~~ 312 (467)
T COG2211 237 PLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVK----KFGKKKLFLIGLLLL 312 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhchHHHHHHHHHHH
Confidence 344444444444445555555555555 456777777777777777777777999999999 999999998865544
Q ss_pred HHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-----cccchhhhhhHHHHH
Q 012976 111 IAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLF 185 (452)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~ 185 (452)
.+ +.....+.+ ....++.++..++.+++.+...+..+++++|..+- .+|..|...+.....
T Consensus 313 ~i-~~~~~~f~~-------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 313 AV-GYLLLYFTP-------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred HH-HHHHHHhhc-------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 44 444444433 12245666777788899999999999999988743 223333778888888
Q ss_pred HHHHHHHHHhhccc
Q 012976 186 MAVGNILGYATGSF 199 (452)
Q Consensus 186 ~~~g~~ig~~~~~~ 199 (452)
.=+|..++..+.++
T Consensus 379 ~K~g~ala~~~~g~ 392 (467)
T COG2211 379 RKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877766
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.29 E-value=7.6e-06 Score=78.46 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh--CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYVQEL--GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL 117 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~ 117 (452)
.+...........+++.|.++. +.+....+...+.+.....++.+++|++.| |+++||.+.+...+ .++..++
T Consensus 241 ~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~----r~~~~~~l~i~~~~-~~~~~ll 315 (410)
T TIGR00885 241 QFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLIS----YLAAHKVLMAYAII-GMALCLG 315 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCHHHHHHHHHHH-HHHHHHH
Confidence 3333333344557788888665 334444454556666777899999999999 99999877664444 3334444
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
....++. .......+.+++.+..+|...++..+..+++.+. .+.++.. ..+|+.+.|.+.
T Consensus 316 ~~~~~~~----------------~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~--~s~~l~~--~~~Gga~~p~l~ 375 (410)
T TIGR00885 316 SIFAGGH----------------VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKY--GAAGLVM--AIIGGGIVPPLQ 375 (410)
T ss_pred HHHcCCh----------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh--hHHHHHH--HHhccchHHHHH
Confidence 4333221 1234455566777788899999999999876653 2333332 238888888777
Q ss_pred cc
Q 012976 198 SF 199 (452)
Q Consensus 198 ~~ 199 (452)
|.
T Consensus 376 G~ 377 (410)
T TIGR00885 376 GF 377 (410)
T ss_pred HH
Confidence 76
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.28 E-value=7.6e-07 Score=86.78 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=93.2
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHh-cccccccccCCCCCCCch
Q 012976 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIG-LSADIGWLLGDRGDFRPR 137 (452)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 137 (452)
+.+|.++.+.|.+.....++..++....+++.+ |++.|+.+.+...+ .+.+..... ..... .. .....
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~----~~~~r~~l~~~~~l-~~~~~~~~~~l~~~~-~~-----~~gi~ 349 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLK----TFPYRLLFGVTTLL-YTLSSLFDLILVKRW-NL-----AFGIS 349 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHh----hCCHHHHHHHHHHH-HHHHHhCceeeeecc-cc-----ccCCC
Confidence 578999999999999999999999999998888 99998877764443 333332221 11111 00 00001
Q ss_pred hHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
..+.......+.+++.+....+...++++..|++.++ ...++.+...++|..+++.+++.+
T Consensus 350 ~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~eg--t~~al~~s~~~lg~~v~~~~gg~l 410 (468)
T TIGR00788 350 DEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCES--SVFALLASILHLGSSVSGFLGVLL 410 (468)
T ss_pred CeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCcee--hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123334455667778888888999999999999999 999999999999999999888873
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.7e-05 Score=78.17 Aligned_cols=160 Identities=14% Similarity=0.135 Sum_probs=99.1
Q ss_pred hHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHH
Q 012976 68 ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFW 147 (452)
Q Consensus 68 ~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (452)
.+++.++..+...+..|+.+++-+|.++|.+.++.+.+ +.++..+++..+....+... .....+.++.+....
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~-G~~l~~l~f~~l~~~~~~~~------~~~~vs~~~~~~~~~ 390 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAI-GMVLCSGAFLVLPLGAKFAN------DAGIVSVNWLIASYG 390 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHH-HHHHHHHHHHHHHHHHHhcC------CCCccCHHHHHHHHH
Confidence 56666677777777777775544433336665444444 56666666666554433200 111233456777888
Q ss_pred HHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHH
Q 012976 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFL 227 (452)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~ 227 (452)
+.+++.....|...+++.+..|++.|+ +.+|.......+|+.++..+..... .|........ ...++.+.|..
T Consensus 391 l~~~ge~~~~p~g~s~~~~~aP~~~rg--~~~g~~~l~~a~g~~~~g~~~~~~~----~~~~~~~~~~-~~~~~~~~f~~ 463 (500)
T PRK09584 391 LQSIGELMISGLGLAMVAQLVPQRLMG--FIMGSWFLTTAGAALIAGYVANLMA----VPDNVTDPLM-SLEVYGRVFLQ 463 (500)
T ss_pred HHHHHHHHHhHHHHHHHHHhCcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhc----cccccccchh-hhhhHHHHHHH
Confidence 999999999999999999999999999 9999888888888888776654310 0111000000 00136677777
Q ss_pred HHHHHHHHHHHHHh
Q 012976 228 DVIFIAITTCISAS 241 (452)
Q Consensus 228 ~~~~~~~~~~~~~~ 241 (452)
.+++.+++.++.+.
T Consensus 464 ~~~~~~~~a~~~~~ 477 (500)
T PRK09584 464 IGIATAVIAVLMLL 477 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 76665554444443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-06 Score=75.16 Aligned_cols=174 Identities=18% Similarity=0.214 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhc
Q 012976 42 GIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (452)
Q Consensus 42 ~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~ 120 (452)
...++++..-..+-||- +-+|++..+..-+......+..++....|++..| |.++++.-.+ ++..++.++.++..
T Consensus 219 l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~---~~~~~~~a~~-G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 219 LGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSR---RLGKKRTAAL-GCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchHHHHH-HHHHHHHHHHHHHH
Confidence 33456777778888887 8899999999999999988888888888987773 5566554444 55555555555444
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhcccc
Q 012976 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFS 200 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~ 200 (452)
+... ...+.+..+.+++|++.+.......+...|..++++.| ..+|..+..+.++..++..+++..
T Consensus 295 a~~~------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG--~~mG~WGaaQA~A~Glg~~~GG~~ 360 (403)
T PF03209_consen 295 AGPL------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAG--LFMGAWGAAQAIARGLGTFLGGAL 360 (403)
T ss_pred HHhc------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3221 12367778888999999999888999999999999999 999999999999998888888872
Q ss_pred ccceecccccccccc-ccccchhHHHHHHHHHHHHHHHHH
Q 012976 201 GWFKILPFTLTSACN-VDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 201 ~~~~~~p~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
.+. .....+ ....+|...|.+-++..++..++.
T Consensus 361 ~D~------~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 361 RDL------VRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHH------HHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 111 111111 112367777777666555554433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.4e-06 Score=82.10 Aligned_cols=197 Identities=11% Similarity=0.020 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQF-GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
+++..........+++ +......|.+.+.+..|.+... .....+..+...++..+...+.| |+|||+.++.+..
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd----~~gRr~lll~s~~ 367 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVD----RFGRRKLLLFGAA 367 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHH----HhccHHHHHHhHH
Confidence 3334434444445454 5566667888888998887553 44444555666777777789999 9999988877554
Q ss_pred HHHHHHHHHHhcccccccccCCCCC-CCchhHHHHHHHHHHHHHhhhhcc-hhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGD-FRPRAIAVFVFGFWILDVANNMTQ-GPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
. +.++..++......... .. ......+..++...+.-...+... +..+.+.+|.+|.+.|+ ++.++.....
T Consensus 368 ~-m~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~--~~~s~~~~~n 440 (513)
T KOG0254|consen 368 G-MSICLVILAVVGVFALY----YPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRS--KGASLAVAVN 440 (513)
T ss_pred H-HHHHHHHHHHHHHHhcc----CCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHh--hhHHHHHHHH
Confidence 4 44444433322211000 00 111112222233333323333333 44567889999999999 7777766666
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHH-HHHhccccCCCCCCCC
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTC-ISASAAHEVPLGSHDQ 253 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~e~~~~~~~~ 253 (452)
.+.+.+-... ++...... +....|...+.++.+... ..++++||++....++
T Consensus 441 ~~~~~~v~~~---------~~~~~~~~------~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~slee 493 (513)
T KOG0254|consen 441 WLWNFLISFF---------FPFITEAL------GIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEE 493 (513)
T ss_pred HHHHHHHHHH---------HHHHHHhc------cccchHHHHHHHHHHHHHHHheEEcccCCCCcHHH
Confidence 6555443222 22222111 124456666666666655 6788899988766543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=75.53 Aligned_cols=117 Identities=13% Similarity=0.085 Sum_probs=71.3
Q ss_pred chhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHH
Q 012976 65 HAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVF 144 (452)
Q Consensus 65 ~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (452)
+...+.+..++.+...++.+++++++| |+|+|+.+.....+..+...... +.++. ......+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~----r~gkk~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~ 323 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTD----WKCKVTIFWWTNALLAVISLAMF-FVPMQ-------------ASITMFV 323 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HhChHHHHHHHHHHHHHHHHHHH-Hhchh-------------HHHHHHH
Confidence 334556667777888889999999999 99998876543333333333322 22110 0112223
Q ss_pred HHHHHHHhhhhcchhHHHHhhhccCc-----cccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 145 GFWILDVANNMTQGPCRALLADLTGK-----DHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 145 ~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
...+.+++.+...+..+++++|..+. .+|..+...+.......+|..+++.+++.
T Consensus 324 ~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 324 FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666566667788877662 23442355666677888888888887776
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.3e-05 Score=72.64 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HhCCCch------h----hHHHHhhhhhhhhhcccccccccccccCCCC
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-Q-ELGIPHA------W----ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG 98 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~g~s~~------~----~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~G 98 (452)
+.++.++...+...+++.....|.+.+. + -++-++. + -.+...++.+...+.+.+.-.+.+ |+|
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~----~~g 333 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR----GWG 333 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhc
Confidence 4466677777877778777777778877 2 3443321 1 122233444444455556666777 998
Q ss_pred C-cchhHHHHHHHHHHHHHHHhccccccc---ccCCCC---CCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCcc
Q 012976 99 R-RRPFIVCGAISIAVAVLLIGLSADIGW---LLGDRG---DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD 171 (452)
Q Consensus 99 r-r~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 171 (452)
+ |+.+.+ +.++...++....+.++..+ ..++.+ .......+..++...+.|+..+..+..-++++++..+++
T Consensus 334 ~~k~~~~~-s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~ 412 (477)
T TIGR01301 334 AGKRLWGI-VNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNL 412 (477)
T ss_pred cchhHHHH-HHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHcccc
Confidence 6 455455 55555555555544332100 000000 000111245556677788888888888999999999965
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCC
Q 012976 172 HRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPL 248 (452)
Q Consensus 172 ~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~ 248 (452)
.|+.|..+|+.+.+..+..++..+..|... +.. +++-.+.+.+.++..++..+..++.+|+++.
T Consensus 413 ~~~~G~~mgilN~~I~lpQii~sl~~g~~~-----~~~--------g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 413 GAGQGLSMGVLNLAIVIPQIIVSLGSGPWD-----QLF--------GGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHHHHH-----HHc--------CCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 553339999999999999999887655511 111 1245567888888888888888888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.5e-05 Score=72.25 Aligned_cols=151 Identities=9% Similarity=-0.013 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
++++..................+.|.++ +..|.++.+.++.......+..++..+.+.+.+ +.+++|..... ..
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~-~~ 292 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK----DPTEPRFIWRA-VP 292 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCchhHHHHH-HH
Confidence 4444444444444445555556678777 456999999999887777777777777777654 33333332221 11
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
....+..+.....-. . ....+..++...+.++|.+...+...+..-+ ..+..+| ++.+..+.....+
T Consensus 293 ~~~ig~~l~~~~~~~--------~--~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~-~~~~~~G--~a~a~~~~~~~~~ 359 (413)
T PRK15403 293 IQLVGLALLIVGNLL--------W--PHVWLWSVLGTSLYAFGIGLIFPTLFRFTLF-SNNLPKG--TVSASLNMVILMV 359 (413)
T ss_pred HHHHHHHHHHHHHHH--------c--cccHHHHHHHHHHHHHHHHHHhHHHHHHHhc-cCCCCCc--HHHHHHHHHHHHH
Confidence 111111111111000 0 0012233456666677777776666543221 1222367 7888888877777
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..+++..+++
T Consensus 360 ~~~~~~~~g~ 369 (413)
T PRK15403 360 MAVSVEIGRW 369 (413)
T ss_pred HHHHHHHHHH
Confidence 7777777665
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4e-06 Score=77.77 Aligned_cols=89 Identities=15% Similarity=0.058 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
...+...+.+++.|++.||++||+++.+|..+..++.+...+.. +.|.+++.=.+.|+|-+..
T Consensus 76 vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~-----------------~Fwq~~l~R~~vGiGeAs~ 138 (493)
T KOG1330|consen 76 VFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN-----------------HFWQVLLCRGFVGIGEASY 138 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhccchhhh
Confidence 45677788899999999999999999999999999999888886 7888999999999999999
Q ss_pred hhccchhhhhhcccccCcccceeeeeee
Q 012976 420 YSVPYALVSIRTESLGLGQGGHFYGLYV 447 (452)
Q Consensus 420 ~~~~~~~~~~~~~~~~~g~g~~~g~~n~ 447 (452)
.++..++++|.+|+.+|+ ..++++|+
T Consensus 139 ~~ia~s~IaD~f~~~~Rs--~~~~ify~ 164 (493)
T KOG1330|consen 139 SPIAPSLIADSFPDDKRS--RVLGIFYF 164 (493)
T ss_pred cccchhHhhhcCcchhhh--HHHHHhhh
Confidence 999999999999999974 45555554
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=63.87 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhh
Q 012976 342 SVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (452)
Q Consensus 342 ~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (452)
.++..++.++.+++.||+|||+.+..+..+..++.+.....+ +.+...+...+.|++.+...+
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-----------------NITVLIIARFLQGFGAAFALV 70 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999888888877777666553 455666777888998888888
Q ss_pred ccchhhhhhcccccCccc
Q 012976 422 VPYALVSIRTESLGLGQG 439 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~g~g 439 (452)
...+++.|..|+++|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 71 AGAALIADIYPPEERGVA 88 (141)
T ss_pred hHHHHHHHHCChhhhhHH
Confidence 888999999999887543
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00092 Score=64.67 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhh-hhhhcccccccccccccCCCCCcchhH
Q 012976 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
+...++.+.+++..++..+.+...-..=-.+. .. .+++.+..+=....+ ...+...+..+++| +++|++.+-
T Consensus 20 ~~E~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~--~gae~I~flK~~~vlP~a~~f~~~y~kl~n----~~s~~~lFy 93 (491)
T PF03219_consen 20 RSELKKFLPLALMFFFILFNYTILRDLKDTLVVTA--QGAEVIPFLKVWGVLPVAILFTILYSKLSN----RLSREKLFY 93 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEec--CChhHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHH
Confidence 34456677777776666555443321111111 11 133444444332233 33445666788999 999988775
Q ss_pred HHHHHHHHHHHHHHhc--ccccccccCCC-----CCCC-c-hh-------HHHHHHHHHHHHHhhhhcch-hHHHHhhhc
Q 012976 105 VCGAISIAVAVLLIGL--SADIGWLLGDR-----GDFR-P-RA-------IAVFVFGFWILDVANNMTQG-PCRALLADL 167 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----~~~~-~-~~-------~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~ 167 (452)
+..... ...+.++++ -|+...+.++. .... . .. .|...+......+-.....+ ..+.+..|.
T Consensus 94 ~~~~~F-~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 94 IIIIPF-LGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHH-HHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 432222 222222211 12221111111 0000 0 00 11222222222222333333 358899999
Q ss_pred cCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 168 TGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
++.++-. |..++.+.+.++|.++++.+...
T Consensus 173 tt~~eAK--RfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 173 TTVEEAK--RFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred CCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 99999999999999998877665
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.013 Score=55.04 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=70.8
Q ss_pred HHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHH
Q 012976 71 IWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILD 150 (452)
Q Consensus 71 ~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 150 (452)
+..+-.+...+..+++.++.+ |..-+.-... ...+..+++++..++++. +.-+++..+.+
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~----~v~y~~Ri~~-~~~l~~~g~l~va~~~~v---------------~~~l~Gv~las 123 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIH----RVPYWIRILI-CVALSAAGMLLVAFSPSV---------------WVRLLGVVLAS 123 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhh----hccchHHHHH-HHHHHHHHHhheeeccch---------------hHHHHHHHHHh
Confidence 444444455566666777888 6643222222 445566666666665443 55567777777
Q ss_pred HhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHH
Q 012976 151 VANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVI 230 (452)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~ 230 (452)
++.+.......++.. .+++. ..+..+.+.+.++++|+..-..+ .. .+-..|..+.....
T Consensus 124 ~ssg~GE~tfL~lt~-~y~~~------~l~~wssGTG~aGl~Ga~~y~~l---------T~-----~g~s~~~tll~~~~ 182 (402)
T PF02487_consen 124 LSSGLGEVTFLSLTH-FYGKS------SLSAWSSGTGGAGLVGALYYLGL---------TT-----LGLSPRTTLLIMLV 182 (402)
T ss_pred hhhhhhHHHHHHHHH-hcCcc------ccccccCCcChhhHHHHHHHHHH---------HH-----hCcCHHHHHHHHHH
Confidence 777777666666644 44422 22335555555666665442210 00 00145666666655
Q ss_pred HHHHHHHHHHhcccc
Q 012976 231 FIAITTCISASAAHE 245 (452)
Q Consensus 231 ~~~~~~~~~~~~~~e 245 (452)
+.++..+..++.+|+
T Consensus 183 lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 183 LPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHHHHHHHHhhcc
Confidence 554444444444443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.7e-05 Score=69.68 Aligned_cols=144 Identities=13% Similarity=0.078 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+......+..|..--.......+++.|+.+ .|.++.+.+...+.+..+.+++..++-++.. |+...|.+...+.+
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~----~~~~~k~Laf~a~~ 311 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS----RIKPEKYLAFYALI 311 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCHHHHHHHHHHH
Confidence 334444444444433445556788888866 8999999999999999999999999989999 88888877775544
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
....+.. ..+.++ ...+....+.|...+..+|...++..+..|++. . ..|..-.+.-+|
T Consensus 312 ~ill~~~-~~l~~g----------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t-s---~~s~~l~maivG 370 (422)
T COG0738 312 AILLLLA-VALIGG----------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT-S---VGSGLLVMAIVG 370 (422)
T ss_pred HHHHHHH-HHHhcC----------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc-c---ccceeeeeheec
Confidence 4443333 233322 233345556678889999999999999998333 2 223334445667
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
+.+-|.+.|+
T Consensus 371 GAiiP~l~G~ 380 (422)
T COG0738 371 GAIIPPLQGV 380 (422)
T ss_pred chHHHHHHHH
Confidence 7777766665
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.9e-05 Score=72.92 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
...+...++.++.|+++|.+|||.+++.+.++..++.+.....+ +....+....+.|++.+..
T Consensus 86 ~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~-----------------~~~~~iag~~l~GvgaG~~ 148 (599)
T PF06609_consen 86 AWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ-----------------NMNTFIAGMVLYGVGAGVQ 148 (599)
T ss_pred HHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC-----------------cHHHHHHHHHHHHHhhHHH
Confidence 35667778889999999999999999999999999998888775 5667788888889887776
Q ss_pred hhccchhhhhhcccccCcccc
Q 012976 420 YSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 420 ~~~~~~~~~~~~~~~~~g~g~ 440 (452)
... ...++|..|.+.|+.+.
T Consensus 149 ~~~-~~~isEl~p~k~R~~~~ 168 (599)
T PF06609_consen 149 ELA-ALAISELVPNKWRGLGL 168 (599)
T ss_pred HHH-HHHHHHhcccchhhhHh
Confidence 543 45689999998876544
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.2e-05 Score=69.71 Aligned_cols=165 Identities=14% Similarity=0.059 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH-HHHHHHHHHHHHH
Q 012976 40 AGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI-VCGAISIAVAVLL 117 (452)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i-~~~~~~~~~~~~~ 117 (452)
....+......-+.++.+. +++..+..+.|+.+.-..+..+++.++.|.++| |++.-+.++ ..+.+....+...
T Consensus 279 i~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~----k~~~~~wl~~~~gl~~~G~~~~~ 354 (464)
T KOG3764|consen 279 ITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLAD----KYPHLRWLLSLGGLATVGVSSGP 354 (464)
T ss_pred hhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHH----hcCchhHHHHHHHHHHHHHHhch
Confidence 3334456666667777765 788866668999998999999999999999999 998444332 3333333344444
Q ss_pred HhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhc---chhHHHHhhhccCcc---ccchhhhhhHHHHHHHHHHH
Q 012976 118 IGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMT---QGPCRALLADLTGKD---HRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~---~r~~~~~~~~~~~~~~~g~~ 191 (452)
..+++++ ..+.+-.+..+++.+.. ..+...+..|.-..+ .-| ...++...++.+|..
T Consensus 355 iP~~~~~---------------~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYG--sVyaIad~a~sla~a 417 (464)
T KOG3764|consen 355 IPFATSI---------------AQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYG--SVYAIADAAFSLAYA 417 (464)
T ss_pred hHhhhhH---------------HHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceee--eHHHHHHHHHHHhhh
Confidence 4454443 22223333333333333 334444555544444 556 788899999999999
Q ss_pred HHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 012976 192 LGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 192 ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 240 (452)
+||.+++.+.... |++|.-.+.++..++...+..
T Consensus 418 ~GP~~gg~iv~~i---------------GF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 418 IGPTFGGSLVEAI---------------GFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred ccccccchheeeh---------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999988844332 888887777777666554443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00056 Score=62.41 Aligned_cols=155 Identities=18% Similarity=0.195 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCc--hhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 45 FGWALQLSLLTPYVQELGIPH--AWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~--~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
..........+.+..+.+.+. ...++..+...+...+..++.|.++| |+|||+.++... .....+.....+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~~-~~~~~~~~~~~~~~ 90 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGD----RYGRRKVLIIGL-LLFLLGTLLLALAP 90 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccc----cccchHHHHHHH-HHHHHHHHHHHhCc
Confidence 444455556667777777666 47888999999999999999999999 889986665533 22233323332322
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc-cccchhhhhhHHHH-HHHHHHHHHHhhcccc
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK-DHRRTRVANAYFSL-FMAVGNILGYATGSFS 200 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~-~~~~g~~ig~~~~~~~ 200 (452)
+ ...+.+.+.+...+++.+...+...+++.|..|+ ++|+ ...+.... ...+|..+++.+++..
T Consensus 91 ~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 91 N-------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERG--LAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred c-------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2245666677667888888888899999999997 5677 77777777 5777888887666552
Q ss_pred ccceeccccccccccccccchhHHHHHHHHHH
Q 012976 201 GWFKILPFTLTSACNVDCANLKSAFFLDVIFI 232 (452)
Q Consensus 201 ~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~ 232 (452)
... ...+|+..|.......
T Consensus 156 ~~~-------------~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 156 LGA-------------LLWGWRAAFLLAALLG 174 (338)
T ss_pred HHH-------------HhcchHHHHHHHHHHH
Confidence 111 1137888666554444
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00037 Score=66.24 Aligned_cols=83 Identities=7% Similarity=-0.078 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
.......+..++.|+++||+|.|+++.++.+..++..+++.+.+ +...+.+.-+++|++.+..
T Consensus 70 ~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~-----------------Sl~~L~i~R~llGvaEA~~ 132 (511)
T TIGR00806 70 VLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT-----------------SVWHMQLMEVFYSVTMAAR 132 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 45666778889999999999999999999999999999998886 6777888889999999999
Q ss_pred hhccchhhhhhcccccCcccc
Q 012976 420 YSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 420 ~~~~~~~~~~~~~~~~~g~g~ 440 (452)
. ..+.++...+|+++|++.+
T Consensus 133 ~-A~~syI~~WfP~kER~rat 152 (511)
T TIGR00806 133 I-AYSSYIFSLVPPSRYQRAA 152 (511)
T ss_pred H-HHHHHHHHHCCHHHHHHHH
Confidence 9 8899999999999986543
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-05 Score=75.71 Aligned_cols=91 Identities=18% Similarity=0.080 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhH
Q 012976 335 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (452)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (452)
.+...++.++..+++++.|.++||+|||+++.++.++..++-+..++.. +.+..+++-++.|+
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~-----------------~~~~~~~~Rfl~G~ 183 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP-----------------NYWMFLIFRFLSGF 183 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC-----------------cHHHHHHHHHHHHh
Confidence 4455567888889999999999999999999999999999998888885 77888889999999
Q ss_pred HhHhHhhccchhhhhhcccccCccccee
Q 012976 415 PLAITYSVPYALVSIRTESLGLGQGGHF 442 (452)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 442 (452)
+.+....+.+.+++|.+++++|+....+
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~ 211 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTL 211 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHH
Confidence 9999999999999999999998765443
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00052 Score=64.93 Aligned_cols=130 Identities=12% Similarity=0.077 Sum_probs=90.4
Q ss_pred hHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCc
Q 012976 284 SGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKW-GAG 362 (452)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~~ 362 (452)
||.++.++..-+.--++++++..-+..|+....-.+ ..+++..+.+..+ .+....-+..+++||++||+ |+|
T Consensus 20 Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g-----Lg~~~~~A~~l~~--~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 20 PRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG-----LGFDETHATGLFS--AYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred CchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc-----CCcChHhhHHHHH--HHHHHHHHHHHHHHHHHHHhcchh
Confidence 578888888888877888887777777775333111 1122211111111 13333346678999999997 999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 363 FIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
+++..|.++++++.+++.... ......+.+.+.+++++.|..=+-+.+++.|..|+++
T Consensus 93 ~tI~lGail~~iGh~~L~~~~---------------~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~D 150 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISS---------------VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDD 150 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccc---------------cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCC
Confidence 999999999999998887762 0034456677777778888888888899999998774
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00051 Score=68.01 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
...++.|++.||+|+|+++.++.++..++.++.++... . ....+.+.+++...+.|++.+...+.....
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~---~--------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~ 144 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQ---E--------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVT 144 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhc---c--------cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568899999999999999999999999988877620 0 000146667777778888888777777778
Q ss_pred hhhhcccccCcccceeeee
Q 012976 427 VSIRTESLGLGQGGHFYGL 445 (452)
Q Consensus 427 ~~~~~~~~~~g~g~~~g~~ 445 (452)
+.+.+| ++| |.+.|+.
T Consensus 145 i~~~Fp-~~R--G~a~Gi~ 160 (591)
T PTZ00207 145 VLSVFP-SNR--GAVVAIM 160 (591)
T ss_pred HHHhCh-hhh--HHHHHHH
Confidence 888887 445 4444443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00044 Score=64.06 Aligned_cols=35 Identities=9% Similarity=-0.029 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHhHHhHhHhhccchhhhhhccccc
Q 012976 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLG 435 (452)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 435 (452)
+.+..+....++|+..|=..+..+.+..+.+|+++
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e 376 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSE 376 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHH
Confidence 34556677788888888888887778777776664
|
|
| >KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=1.7e-05 Score=67.56 Aligned_cols=87 Identities=18% Similarity=0.373 Sum_probs=70.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccc-----ccCCCCCcch
Q 012976 28 VPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDR-----CTSRFGRRRP 102 (452)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-----~~~r~Grr~~ 102 (452)
..++..+.++.+.+......++..+|+-.|+++.|.++.....++.+..+..++..|+.|..+|- +.+|+|||+.
T Consensus 14 igr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 14 IGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred ccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 55566677888888888888899999999999999999999999999999999999999977662 3579999998
Q ss_pred hHHHHHHHHHHH
Q 012976 103 FIVCGAISIAVA 114 (452)
Q Consensus 103 ~i~~~~~~~~~~ 114 (452)
+-..+.++..++
T Consensus 94 wh~~gt~lVslS 105 (412)
T KOG4830|consen 94 WHLIGTVLVSLS 105 (412)
T ss_pred eeecccEEEEEe
Confidence 766555444433
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0037 Score=56.27 Aligned_cols=289 Identities=10% Similarity=0.066 Sum_probs=144.4
Q ss_pred cccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhc
Q 012976 88 HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADL 167 (452)
Q Consensus 88 ~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 167 (452)
.+.| -..-|++++. -.+..+....+..+.++.+ .+-+.-+..|... +...+.++++-+.
T Consensus 64 lLTD----~lrYKPvivl-q~ls~v~~w~~lv~g~sV~---------------~mQvlE~FyG~~t-AaEIAYysYIYs~ 122 (433)
T KOG3810|consen 64 LLTD----YLRYKPVVVL-QALSGVPVWIMLVFGPSVK---------------AMQVLEFFYGPAT-AAEIAYYSYIYSK 122 (433)
T ss_pred HHhh----hhhcceeeee-eccchhHHHHHHHhcCCch---------------heeeehhhcChHH-HHHHhhhheeeee
Confidence 3678 6645544444 4455555566665655541 1112222222222 2345567888888
Q ss_pred cCccccchhhhhhHHHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 168 TGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 168 ~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
.+++++. ++.+......-.|...|..++..+..... .++...=.+.. ....+......++|..+
T Consensus 123 Vd~~~Yq--rvt~y~RaA~L~g~~~g~vlaQlLvs~~~-------------~sy~~LN~ISL-~~~~ia~~~A~fLP~v~ 186 (433)
T KOG3810|consen 123 VDPEMYK--RVTGYCRAAFLVGKFVGSVLAQLLVSLET-------------LSYTTLNYISL-AEVTIAVLLALFLPRVK 186 (433)
T ss_pred cCHHHHH--HHHHHhHHHHHHHhHHHhHHHHHHhhhcc-------------cchhhhchhhH-HHHHHHHHHHhhCCCCc
Confidence 8988888 88888888888888887777665211110 02222222222 22222333344555544
Q ss_pred CCCC---CCCCCCCccccc-CccchH--------HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhH
Q 012976 248 LGSH---DQSAPFSEEGHE-QSSDVH--------EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGRE 315 (452)
Q Consensus 248 ~~~~---~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (452)
+..- ++++....+-++ ..+.+. ...++++.+..+| |++..-.+-..+...+++-+..|. +.
T Consensus 187 rSl~f~~~~~~~~v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~n--p~ll~WSlWwAl~scg~~QV~nY~-----Q~ 259 (433)
T KOG3810|consen 187 RSLYFHRLEDKISVGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSN--PRLLKWSLWWALASCGYYQVTNYT-----QI 259 (433)
T ss_pred hhhhhhcccccceeccchhcCccchhhHHHHHHHHHHHHHHHHHhcC--chhhhhHHHHHHhhchhHHHHHHH-----HH
Confidence 2211 111110000000 001111 1223355555666 555555555555555544444332 33
Q ss_pred hhCCC-CCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHhhhccccC
Q 012976 316 IYGGE-PNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGF--IWGISNILMALCFLAMLILYYVAIHMDYR 392 (452)
Q Consensus 316 ~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (452)
+++.- +.....|+.+.+ .+..+.++++.+..|.+.-++.|.. ++.++....+-+.+.+...+
T Consensus 260 LW~~~~~~~~~vyNG~ve------Av~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~--------- 324 (433)
T KOG3810|consen 260 LWKEVAPNPANVYNGAVE------AVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQ--------- 324 (433)
T ss_pred HHHhhCCCchhhhcCHHH------HHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhccc---------
Confidence 34322 333334444322 2234556677788888876666654 33344333333333333332
Q ss_pred CCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeee
Q 012976 393 GHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGL 445 (452)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~ 445 (452)
+.|...+...++...+....++....+++....+. -|..+|+.
T Consensus 325 --------~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~--~gLvFGiN 367 (433)
T KOG3810|consen 325 --------HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSEL--FGLVFGIN 367 (433)
T ss_pred --------ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhh--heeeeehH
Confidence 56777777888877777777776666666665554 46777763
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0021 Score=51.84 Aligned_cols=101 Identities=8% Similarity=-0.010 Sum_probs=73.8
Q ss_pred hhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHh
Q 012976 73 LCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVA 152 (452)
Q Consensus 73 ~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 152 (452)
++......+..++.+.+.+ ++|.|+.+++++.... +-.... +-++ .+.++.+..+.|++
T Consensus 44 ai~Y~~~~~s~l~~P~iv~----~lg~K~sm~lg~~~y~-~y~~~~-~~~~---------------~~~l~~~s~l~G~~ 102 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVN----KLGPKWSMILGSLGYA-IYIASF-FYPN---------------SYTLYPASALLGFG 102 (156)
T ss_pred HHHHHHHHHHHHhHHHHHH----HHhhHHHHHHHHHHHH-HHHHHH-Hhhh---------------HHHHHHHHHHHhhh
Confidence 3444555666777778889 9999998888554433 222222 2211 35677788899999
Q ss_pred hhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 153 NNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
.+..+...-.++.+..++++|+ +..++.-.....+.++|.+.
T Consensus 103 ~a~lW~aqg~ylt~~s~~~~~~--~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 103 AALLWTAQGTYLTSYSTEETIG--RNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred hHHhhHhhhHHHHHcCCHHHHh--hHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88888888888777777654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.005 Score=56.31 Aligned_cols=141 Identities=12% Similarity=0.053 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCC-CcchhHHHHHHHHHHHH
Q 012976 38 SVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFG-RRRPFIVCGAISIAVAV 115 (452)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~G-rr~~~i~~~~~~~~~~~ 115 (452)
...+.....+.......+.+. +.+|.++.|.|-+.+...+...+.+.......| |.. .-+..+......+.-.+
T Consensus 268 l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~----~~~~~~~a~l~~~l~~~vP~~ 343 (451)
T KOG2615|consen 268 LHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILP----RYKGNIKAVLLFSLLLIVPAF 343 (451)
T ss_pred HHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcccccc----ccccchhhHHHHHHHHHHHHH
Confidence 334444444444444444443 678999999999888888888888888888888 543 22223332333333333
Q ss_pred HHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHh
Q 012976 116 LLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYA 195 (452)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~ 195 (452)
++....+.. ..+.++..+..+..+...+....++....|+++|| .++|+......++-.+||+
T Consensus 344 llls~~~~~---------------~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG--~~~Gi~~Sl~alaRaiGPl 406 (451)
T KOG2615|consen 344 LLLSLARTP---------------VVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRG--TLNGIFRSLGALARAIGPL 406 (451)
T ss_pred HHHhccccc---------------hhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccch--HHHHHHHHHHHHHHHhhhh
Confidence 333333221 45556677777777777888899999999999999 9999999999999999999
Q ss_pred hccc
Q 012976 196 TGSF 199 (452)
Q Consensus 196 ~~~~ 199 (452)
++|.
T Consensus 407 v~g~ 410 (451)
T KOG2615|consen 407 VSGV 410 (451)
T ss_pred hhhe
Confidence 9977
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00058 Score=48.22 Aligned_cols=75 Identities=15% Similarity=0.109 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc
Q 012976 44 QFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD 123 (452)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~ 123 (452)
.++-..+.+.+|...++.++|.++.|++.+...+++.++.+...++.+ +..+|+.+.. +.+....+...+.+.++
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~----~~~~~~~~~~-~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPR----HSRPRRLLRA-GLLLTVLSTAAMALTHS 79 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccHHHHHHH-HHHHHHHHHHHHHHHhc
Confidence 455667788999999999999999999999999999999999999988 7555554444 66666666666665544
|
Note that many members are hypothetical proteins. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.21 Score=47.62 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCchhhHHHHhhhhh-hhhhcccccccccccccCCCCCcchhH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQELG---IPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFI 104 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~-~~~i~~~~~G~l~Dr~~~r~Grr~~~i 104 (452)
..++++.+.+..++..+.++ .+-..-+.+. .++..+.++=+..-+ +..+..++.+++.+ +.-|++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~----~lt~~~vF~ 96 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLN----ILTREKVFY 96 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHh----hcCHHHHHH
Confidence 34556666665555544433 2233334443 345556666665555 56777888899999 888888765
Q ss_pred HHHHHHHHHHHHHHhcc--cccccccCCC---------CC-CCch-----hHHHHHHHHHHHHHhhhhcch-hHHHHhhh
Q 012976 105 VCGAISIAVAVLLIGLS--ADIGWLLGDR---------GD-FRPR-----AIAVFVFGFWILDVANNMTQG-PCRALLAD 166 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 166 (452)
..... ....++++++. +....+.+|. .. ..-+ .-|...+.....-.-.+.... ..+....|
T Consensus 97 ~~~~~-F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNe 175 (509)
T COG3202 97 IILGF-FLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANE 175 (509)
T ss_pred HHHHH-HHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 53322 23333333322 1111111110 00 0001 113322223222233333333 45788999
Q ss_pred ccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 167 LTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 167 ~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.+..++-. |..++.+...+++.++++.+..+
T Consensus 176 itt~~eak--RFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 176 ITTIEEAK--RFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred hhhHHHhh--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888 99999999999999998877766
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0074 Score=57.60 Aligned_cols=163 Identities=13% Similarity=0.097 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCchhh-HHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYV---QELGIPHAWA-SIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~s~~~~-g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+++.+....+..++.........|..+ ...+.+.... +.......++..++..+.+.+++|.+ ++||++.+.++.
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir-~fg~~~~~~~~~ 319 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIR-GFGRKPTVLIGI 319 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhh-hcccCcchhHHH
Confidence 344444444444444444444444433 3445444433 33334555666777778888888655 688988777755
Q ss_pred HHHHHHHHHHHhcccccccccCCC--CCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDR--GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLF 185 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 185 (452)
.+..+...+.....+...++-++. ............+..++.|++-+......+..+.+.. +++|. .+.++....
T Consensus 320 ~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~--~~fsi~kfy 396 (461)
T KOG3098|consen 320 IIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRA--QAFSLFKFY 396 (461)
T ss_pred HHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchH--HHHHHHHHH
Confidence 554444444333333222211111 0112233556667777888999998888999999999 46677 788888888
Q ss_pred HHHHHHHHHhhcc
Q 012976 186 MAVGNILGYATGS 198 (452)
Q Consensus 186 ~~~g~~ig~~~~~ 198 (452)
..++..++....+
T Consensus 397 q~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 397 QSVASCVAFFFSP 409 (461)
T ss_pred HHHHHHHHhhhhh
Confidence 8888877655543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0092 Score=41.71 Aligned_cols=68 Identities=10% Similarity=0.169 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHH--HHHHHHHHHHHHHHHHHHHhhCCchhHHH
Q 012976 290 ILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGL--MLNSVVLGITSVLMEKLCRKWGAGFIWGI 367 (452)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~i~~~~~g~l~dr~g~~~~~~~ 367 (452)
+-..+++.+.+..++..|.+.|+.+ . |.+...++. .+..+...++.++.|+++||.++++....
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~--~------------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ--L------------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh--c------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 3445566666777788888888742 1 333333333 34667778899999999999999887765
Q ss_pred HHHH
Q 012976 368 SNIL 371 (452)
Q Consensus 368 ~~~~ 371 (452)
...+
T Consensus 71 ~~~~ 74 (77)
T PF12832_consen 71 GSLF 74 (77)
T ss_pred HHHH
Confidence 5543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.027 Score=45.52 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhH
Q 012976 335 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGG 414 (452)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 414 (452)
..++.+......+..++.+.+.+++|.|+.++++.+...+-....... +.+..+...++.|+
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~------------------~~~~l~~~s~l~G~ 101 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP------------------NSYTLYPASALLGF 101 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh------------------hHHHHHHHHHHHhh
Confidence 344555455566778899999999999999999988776544443322 45667788889999
Q ss_pred HhHhHhhccchhhhhhcccccCcc
Q 012976 415 PLAITYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~g~ 438 (452)
+.+......-.++.+..+++.+++
T Consensus 102 ~~a~lW~aqg~ylt~~s~~~~~~~ 125 (156)
T PF05978_consen 102 GAALLWTAQGTYLTSYSTEETIGR 125 (156)
T ss_pred hhHHhhHhhhHHHHHcCCHHHHhh
Confidence 999998888888888877766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0021 Score=65.23 Aligned_cols=103 Identities=9% Similarity=-0.002 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccC---------------------------
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYR--------------------------- 392 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 392 (452)
.+.++..++.++.+++.||.|||+.+.++.++++++.++..+.+...+...+.
T Consensus 76 ~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 155 (633)
T TIGR00805 76 SYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRP 155 (633)
T ss_pred hhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccc
Confidence 35677778889999999999999999999999999988877664222110000
Q ss_pred -----CCCCCC--CchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeee
Q 012976 393 -----GHDLPP--NGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYG 444 (452)
Q Consensus 393 -----~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~ 444 (452)
.++-.+ ......+++.-++.|++.+...+...+++.|.+|+++++ .++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~--~~~~i 212 (633)
T TIGR00805 156 TQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSP--LYIGI 212 (633)
T ss_pred cccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccH--HHHHH
Confidence 000000 112344556778999999999999999999999998864 44443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0013 Score=61.39 Aligned_cols=123 Identities=13% Similarity=0.024 Sum_probs=73.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCC-cchhHHHHHHHHHHH-HHHHhcccccccccCC
Q 012976 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGR-RRPFIVCGAISIAVA-VLLIGLSADIGWLLGD 130 (452)
Q Consensus 53 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Gr-r~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~ 130 (452)
.+...+..-|.+....|++.....+++++++.+.|.+.| |.+. |+..++ .......+ +.+.......
T Consensus 288 ~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~D----ktk~fk~~~~v-~~~~~~v~~~~l~~~t~~~------ 356 (480)
T KOG2563|consen 288 LLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIAD----KTKKFKLTTLV-LYLFALVGTLMLLTCTLFL------ 356 (480)
T ss_pred HhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhh----hhhhHHHHHHH-HHHHHHHHHHHHHHhhccC------
Confidence 333344455777788899999999999999999999999 5433 333433 33333333 2222222111
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 131 RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
...+.......++|.+.....|...-+..|..-|...+ ...|+.+...++-+.+-.
T Consensus 357 ------~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~--tSsGll~~~gq~f~~~~~ 412 (480)
T KOG2563|consen 357 ------GDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEG--TSSGLLNLSGQIFGVILV 412 (480)
T ss_pred ------CceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCc--ccceeEEeehhHHHHHHH
Confidence 11233444555667777778888888888877666666 455666555554444433
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.022 Score=49.43 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=34.9
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccc-ccccccccchhHHHHHHHHHHHHHHHHHHhc
Q 012976 171 DHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT-SACNVDCANLKSAFFLDVIFIAITTCISASA 242 (452)
Q Consensus 171 ~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (452)
++|+ ........+.++|.++.. .|++.. ...+....+|++.+.+.+++.++.+++..++
T Consensus 2 k~K~--~~s~~n~~gf~iG~ii~~-----------ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKS--ILSQFNPWGFNIGTIIVN-----------IPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred Cccc--eeeeeccccchhhHHHHH-----------hhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 566666677788887763 344433 2222233479998888876665555544444
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.2 Score=48.37 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccC
Q 012976 401 IVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
+.+..++...++|+..|-..+..+.+..+.+++++|
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~ 406 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHER 406 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHH
Confidence 445566778888998888887777777777666554
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.11 Score=47.76 Aligned_cols=72 Identities=15% Similarity=0.050 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHh
Q 012976 341 NSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (452)
Q Consensus 341 ~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (452)
....+.+.+.+.|.++||+|||+..+...++.+++.+..-.- +...+++.=.+.|++.+..+
T Consensus 78 Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~------------------~~~~L~~GRvlgGiaTSLLf 139 (354)
T PF05631_consen 78 GFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSS------------------NYPVLLLGRVLGGIATSLLF 139 (354)
T ss_pred HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhcc------------------ccHHHHHHHHHHHHHHHHHH
Confidence 555667788899999999999998888887777777543221 45666777778888888877
Q ss_pred hccchh-hhhh
Q 012976 421 SVPYAL-VSIR 430 (452)
Q Consensus 421 ~~~~~~-~~~~ 430 (452)
+..-+. +.|.
T Consensus 140 S~FEsW~V~Eh 150 (354)
T PF05631_consen 140 SAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHH
Confidence 665443 4443
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0093 Score=57.56 Aligned_cols=122 Identities=16% Similarity=0.136 Sum_probs=92.0
Q ss_pred HHHH-HHhCCCchhhHHHHhhhhhhhhhcccccc-cccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCC
Q 012976 55 TPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVG-HFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRG 132 (452)
Q Consensus 55 ~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G-~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (452)
+.|+ ..++.++.+.+...+.......+++.+.. .+.. .+|-|+ .+..+...-........+.++.
T Consensus 265 ~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~----~l~~~~-~i~lGl~~~~~~~~~~af~~~~-------- 331 (463)
T KOG2816|consen 265 LLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSS----ILGEKR-LISLGLLSEFLQLLLFAFATET-------- 331 (463)
T ss_pred EEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhh-HhhHHHHHHHHHHHHHHHhccc--------
Confidence 4444 67899999999888888888888887776 5666 788877 4444777777777777776654
Q ss_pred CCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 133 DFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 133 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
|.......+ ........+...+..+.+..++++| +++++.+....+.+.+++.+-+.
T Consensus 332 -------w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~e~g--~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 332 -------WMMFAAGVV-VALAGIVFPAIRAFASILVSPEEQG--KVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred -------hhhhHHHHH-HHhhcchhHHHHhHHHhhccccccc--chhhHHHHHHHHhhhhhHHHHHH
Confidence 333333322 2334556778899999999999999 99999999999999999888655
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.032 Score=52.88 Aligned_cols=87 Identities=13% Similarity=0.132 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccc-cchhhhhhHHHHHHHHHHHHHHhhccccccceecccccccccccc
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDH-RRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVD 217 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~ 217 (452)
...+.++..+.++|.|..-+...++..|.+++++ ......+.++..+.++|..++..+.+++...
T Consensus 33 ~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~-------------- 98 (372)
T PF00854_consen 33 LGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQN-------------- 98 (372)
T ss_dssp -CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC--------------
T ss_pred HHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccc--------------
Confidence 4567778888899999999999999999998763 2222678888999999999998776663322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH
Q 012976 218 CANLKSAFFLDVIFIAITTCISA 240 (452)
Q Consensus 218 ~~~~~~~f~~~~~~~~~~~~~~~ 240 (452)
.+|.+.|.+.++..++..+..+
T Consensus 99 -~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 99 -YGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHH
T ss_pred -cchhhhhhHHHHHHHHHHHHHH
Confidence 2899999988777666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.11 Score=51.30 Aligned_cols=124 Identities=10% Similarity=-0.085 Sum_probs=64.1
Q ss_pred HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH-HHHHHHHHHHhcccccccccCCCCCCCch
Q 012976 59 QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA-ISIAVAVLLIGLSADIGWLLGDRGDFRPR 137 (452)
Q Consensus 59 ~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (452)
.-+|-+..+.+.+.+++.++..+++.+.|++.+ +.-|+...+-... +....+..+....... ...
T Consensus 43 ~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~----~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~----------~~~ 108 (521)
T PRK03612 43 YLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLR----DAAAGFVAVELLLALLGGLSALILYAAFAF----------QGL 108 (521)
T ss_pred HHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 567888888899999999999999888887764 3222221111111 1111111111111000 000
Q ss_pred hHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 138 AIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 138 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.........++.++..|+..|....+..+... ++-+ ...|.......+|+++|.++.++
T Consensus 109 ~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~g--~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 109 SRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QHLG--HNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchh--hhhhhhHhHHhHHHHHHHHHHHH
Confidence 11112222334455666665554444433221 1234 56677788888888888888776
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.11 Score=49.82 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=94.6
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHH---Hhccccccccc
Q 012976 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLL---IGLSADIGWLL 128 (452)
Q Consensus 52 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 128 (452)
..+..|+...|+++..+|..-+...+.+..+.....++.+ |+|..|.=+.+ ...-..++.+ ..+.+..
T Consensus 279 ~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~----riGlvr~G~~~-l~~q~~~L~~~v~~~~~~~~---- 349 (432)
T PF06963_consen 279 GLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMK----RIGLVRAGLWS-LWWQWVCLALCVVSFWAPGS---- 349 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchhhHHHH-HHHHHHHHHHHHHHHhcCCC----
Confidence 4556788888999999999999999999999999999999 99987765542 2222211111 1122111
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 129 GDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+........++.+..+.-+|.=...-...-++.|..|+++|+ ..+|..+...++-.++-..++-.
T Consensus 350 ----~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg--~v~gvq~sl~~lf~ll~~~~~ii 414 (432)
T PF06963_consen 350 ----PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERG--AVSGVQNSLQSLFELLSFVLTII 414 (432)
T ss_pred ----CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhh--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 102233444555555555777777788888999999999999 99999999999888887766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.15 Score=50.74 Aligned_cols=167 Identities=16% Similarity=0.040 Sum_probs=99.9
Q ss_pred HHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchhHHHHHHHHHHHHHHHhcccccccccCC-
Q 012976 53 LLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGD- 130 (452)
Q Consensus 53 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (452)
.+.....+++.+...+.-....+.-......+.+++++| . +||-+++.+++. +...+............+.+.
T Consensus 60 lv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD----~f~gry~tI~~~s~-i~~~G~~~lt~~a~~~~l~p~~ 134 (571)
T KOG1237|consen 60 LVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLAD----SFLGRYFTINIGSL-ISLLGLFGLTLSAMIPALLPFM 134 (571)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHH----HHhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCcc
Confidence 333334888888877776667776667777788999999 5 477777666444 344443333333222111110
Q ss_pred -----C----CCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc---ccc-chhhhhhHHHHHHHHHHHHHHhhc
Q 012976 131 -----R----GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK---DHR-RTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 131 -----~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~~r-~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
. +.........+..+..+..+|.+..-+...+.-+|.+++ +++ ....-+.+.....++|..++..+.
T Consensus 135 ~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~ 214 (571)
T KOG1237|consen 135 CKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVL 214 (571)
T ss_pred ccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHH
Confidence 0 011122334555666667788888899999999999983 222 211456777777888888876664
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHH
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCIS 239 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 239 (452)
.+...+ .+|...|.+..++.++..++.
T Consensus 215 vyiq~~---------------~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 215 VYIQDN---------------VGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred Hhhhhc---------------ccceeeccHHHHHHHHHHHHH
Confidence 442211 277777777766555544433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.47 Score=42.86 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHH
Q 012976 335 ALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMA 373 (452)
Q Consensus 335 ~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~ 373 (452)
.+.+..+++...+.+.+.|.+.+++||-.....+.+.-.
T Consensus 313 gf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l 351 (390)
T KOG3097|consen 313 GFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHL 351 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 344445788888889999999999999887766665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.35 Score=45.61 Aligned_cols=59 Identities=10% Similarity=0.012 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
.|..++..+..|+..|+.+......+.|..++++|. .++|..+.+-++|..+++.++-.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~RE--Fslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDRE--FSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHH--HHHHHHHHHhhHHHHHHHHHHHH
Confidence 455556667778888888888888999999999999 99999999999999998877543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.034 Score=53.39 Aligned_cols=86 Identities=17% Similarity=0.067 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHh
Q 012976 340 LNSVVLGITSVLMEKLCRKWGA-GFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI 418 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 418 (452)
...++..+.+++.++...|.+. |+.++.+.++++++.++.....+.+++ ..+..++.-.+.|++.+.
T Consensus 79 a~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~------------~~y~mL~~R~l~Gvg~~n 146 (488)
T KOG2325|consen 79 ASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNG------------VKYLMLVARILTGVGVGN 146 (488)
T ss_pred HHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccc------------hHHHHHHHHHHcCcCccc
Confidence 4788888999999999999886 778889999999999888666544332 456777778888888766
Q ss_pred HhhccchhhhhhcccccCcc
Q 012976 419 TYSVPYALVSIRTESLGLGQ 438 (452)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~g~ 438 (452)
.. +.-+++++..-.++|-+
T Consensus 147 ~a-~lR~Y~a~~s~~~dR~r 165 (488)
T KOG2325|consen 147 FA-VLRAYIADASTVEDRPR 165 (488)
T ss_pred HH-HHHHHHHhccCccchHH
Confidence 43 34466776444444433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.027 Score=54.42 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=79.2
Q ss_pred HHhC---CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCC
Q 012976 59 QELG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFR 135 (452)
Q Consensus 59 ~~~g---~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (452)
+..+ +++...+.+..+..++..++..+....-- +..-|+.+.....+....++.-..+........ + .
T Consensus 245 ~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~----~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~----G-i 315 (433)
T PF03092_consen 245 DALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFS----NWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDL----G-I 315 (433)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHHHhcccEEEEEEEeeee----C-c
Confidence 3455 88888888887777777777666654433 445566665544443333333222222210000 0 0
Q ss_pred chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 136 PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 136 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
... +..+.-..+..+.....+.+...+++|+.|+...+ ...++.....++|..++..++..
T Consensus 316 ~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Eg--t~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 316 PDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEG--TVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred CCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 11222233444555666778888999999999999 89999999999999998888876
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.39 Score=42.24 Aligned_cols=83 Identities=11% Similarity=0.036 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhh
Q 012976 349 SVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVS 428 (452)
Q Consensus 349 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 428 (452)
+++.|.+.||+|++.++.+|.+...+++..+...-. +. .+. ...+...+...+.|.+.............
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~--~~-------i~~-~~~~~~~~~~~l~~~s~~~~~ta~lvt~~ 122 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVS--GR-------IPS-LPVWLMCLFLFLGGNSSCWFNTASLVTCV 122 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh--Cc-------cCc-cchHHHHHHHHHHcccHHHhhhHHHHHHH
Confidence 588999999999999999999999999987766530 00 011 13455555555666665555555445555
Q ss_pred hhcccccCcccceeee
Q 012976 429 IRTESLGLGQGGHFYG 444 (452)
Q Consensus 429 ~~~~~~~~g~g~~~g~ 444 (452)
+.+|+ +| |.+.|+
T Consensus 123 ~NFP~-~R--G~vvgi 135 (250)
T PF06813_consen 123 RNFPR-SR--GTVVGI 135 (250)
T ss_pred HhCcc-cc--Cceehh
Confidence 67775 45 455443
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.81 E-value=2.4 Score=37.34 Aligned_cols=107 Identities=10% Similarity=0.193 Sum_probs=62.5
Q ss_pred hHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHH
Q 012976 68 ASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFW 147 (452)
Q Consensus 68 ~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (452)
.|.+.+-+.++.++++-+..++..|.+.|. ..++.......+..+.+........ ... .....-+++.+
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s~~~v---e~ymqivf~vs~a~l~Lpilt~~vs-------P~k-es~~~s~i~F~ 352 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRSSPKV---ESYMQIVFLVSIAALLLPILTSSVS-------PSK-ESPSESLIGFC 352 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcCCccc---chHHHHHHHHHHHHHHHHHHHhccC-------CCc-CCchHHHHHHH
Confidence 477888888888888888777766433322 2222222222232222222211110 111 12233356777
Q ss_pred HHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 148 ILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 148 ~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
++-.+.|..+|...-+-++..|++.|. ..+-++..-.+
T Consensus 353 ~~E~cvGlfwPSimkmRsqyIPEears--timNfFRvPLn 390 (454)
T KOG4332|consen 353 LFEACVGLFWPSIMKMRSQYIPEEARS--TIMNFFRVPLN 390 (454)
T ss_pred HHHHHHhhcchHHHHHHHhhCCHHHHh--hhhhheechhh
Confidence 788889999999999999999999998 55555444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=91.44 E-value=2.4 Score=30.08 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHH
Q 012976 334 GALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILY 383 (452)
Q Consensus 334 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~ 383 (452)
+.+....+.++..++++...++.++.++++.+..+.+...+....+.+.+
T Consensus 29 ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~ 78 (85)
T PF06779_consen 29 AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTH 78 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444457888889999999999998888899999999888888888875
|
Note that many members are hypothetical proteins. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=91.43 E-value=1.1 Score=45.59 Aligned_cols=84 Identities=8% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhh
Q 012976 343 VVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYS 421 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 421 (452)
...-+..+++|+++|++ |+++.+.++.++..++.+++.+..... . .+.......++.+.+..+|.+.+-+
T Consensus 34 ~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~-~--------~~~~~~~~~l~gLaLia~G~GgiKp 104 (654)
T TIGR00926 34 YLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPS-S--------GHPLHDLLDLLGLALIALGTGGIKP 104 (654)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcc-c--------ccchHHHHHHHHHHHHHhhcccccc
Confidence 33446678899999975 999999999999888887776642100 0 0011233355666777788888888
Q ss_pred ccchhhhhhccccc
Q 012976 422 VPYALVSIRTESLG 435 (452)
Q Consensus 422 ~~~~~~~~~~~~~~ 435 (452)
...+...|..++++
T Consensus 105 ~vsaf~gdqf~~~~ 118 (654)
T TIGR00926 105 CVSAFGGDQFEERQ 118 (654)
T ss_pred CchhhhHhhcCccc
Confidence 88888998887643
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=91.02 E-value=4.6 Score=38.34 Aligned_cols=122 Identities=10% Similarity=0.102 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHh---CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHH-HHHHHHHHHHHHhc
Q 012976 45 FGWALQLSLLTPYVQEL---GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC-GAISIAVAVLLIGL 120 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~---g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~-~~~~~~~~~~~~~~ 120 (452)
.++.....+.....++. +-....-|.+-++..+.++++....|++.. ++.+-.-+.++ ..++.+..+.++..
T Consensus 261 cgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~----~w~~~~~l~l~~~S~l~a~~L~lm~~ 336 (412)
T PF01770_consen 261 CGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKV----NWDRWGELALGVFSLLQAGLLFLMSF 336 (412)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhc----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666 333445688888888889999999999866 55554333332 22333334444444
Q ss_pred ccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHH
Q 012976 121 SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMA 187 (452)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 187 (452)
.++ ++...++..+++..+....+....-++.....+.-+ ..+|+......
T Consensus 337 t~~---------------Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~ya--LVFGiNtf~Al 386 (412)
T PF01770_consen 337 TGN---------------IWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYA--LVFGINTFVAL 386 (412)
T ss_pred hhH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee--eeeeeHHHHHH
Confidence 444 477777787777777777777777788877777777 77776655433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.079 Score=52.58 Aligned_cols=159 Identities=15% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhh-hhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 36 VASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPV-SGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~-~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
..+......+.......+.|-|+ .+++.++++++++..+..+ +.+++.+++|++..|.+- +.|+.... ..+..++
T Consensus 310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl--~~~~~~~~-~~v~~~v 386 (539)
T PF03137_consen 310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKL--SARGAAKF-CIVVSIV 386 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecC--cHHHHHHH-HHHHHHH
Confidence 33444444556677778999998 6899999999988877666 567888999999995432 23333222 1111111
Q ss_pred HHH-----HHhccccc---ccccCC----------C---------------------CCCCchhHHHHHHHHHHHHHhhh
Q 012976 114 AVL-----LIGLSADI---GWLLGD----------R---------------------GDFRPRAIAVFVFGFWILDVANN 154 (452)
Q Consensus 114 ~~~-----~~~~~~~~---~~~~~~----------~---------------------~~~~~~~~~~~~~~~~~~g~~~~ 154 (452)
+.+ ++.-.++. +-..+. . ...-...+..+++..++..+..+
T Consensus 387 ~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~ 466 (539)
T PF03137_consen 387 SVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTF 466 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHH
Confidence 111 11111211 000000 0 00001223444444444445556
Q ss_pred hcchhHHHHhhhccCccccchhhhhhHHHHHHH-HHHHHHHhhccc
Q 012976 155 MTQGPCRALLADLTGKDHRRTRVANAYFSLFMA-VGNILGYATGSF 199 (452)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~g~~ig~~~~~~ 199 (452)
....+....+-+.+++++|+ .+.|+...... +|.+-||++-|.
T Consensus 467 ~~~~p~~~i~LR~V~~~~rs--~AlGv~~~~~rllg~IPgPIifG~ 510 (539)
T PF03137_consen 467 MSQVPSTLITLRCVPPEQRS--FALGVQWLIIRLLGFIPGPIIFGA 510 (539)
T ss_dssp ----------------------------------------------
T ss_pred hcccchheeeeccCChhhcc--hhhhHHHHHHHhhcCcchHHHHhH
Confidence 66677777778999999999 88888776544 355656555443
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.40 E-value=1.8 Score=41.88 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 140 AVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 140 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
+..++...++|+..|-..+....+.++..++++|. .+..+...+..+|-.+|..+
T Consensus 373 ~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e--~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 373 AYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHERE--VAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 44555677777888877777888889999999998 88888888888888888655
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=89.28 E-value=0.1 Score=47.98 Aligned_cols=91 Identities=13% Similarity=0.023 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCC-CCchHHHHHHHHHHHhHHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKW-GAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLP-PNGIVIAALIIFTILGGPLA 417 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~ 417 (452)
.++++-.+|+.+.++..-+. .+|.+. +..++-.+..-++.......+++ .+| ...+.+..++...++|+..|
T Consensus 190 ~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~-----~~~~~~~~d~~~~i~~~l~g~TNG 263 (309)
T PF01733_consen 190 LFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPR-----YLPVLFNSDAWFIILMLLFGFTNG 263 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccc-----cCCCcccchHHHHHHHHHHHHccc
Confidence 47888888888777643221 233333 32222222222222221110000 001 01134555677778888888
Q ss_pred hHhhccchhhhhhcccccC
Q 012976 418 ITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~ 436 (452)
-..+..+.+..+.++++++
T Consensus 264 yl~tl~m~~~p~~v~~~e~ 282 (309)
T PF01733_consen 264 YLSTLAMMYAPKSVSPEER 282 (309)
T ss_dssp ---HHHH------------
T ss_pred hhhhceeeeCCCcCCHHHH
Confidence 8887777777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=89.18 E-value=1.8 Score=38.93 Aligned_cols=79 Identities=20% Similarity=0.062 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhH
Q 012976 340 LNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAIT 419 (452)
Q Consensus 340 ~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 419 (452)
...+...++.++.|++.||.|||+.+..+.....++.+...+.. . ...+.........|++.+..
T Consensus 47 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~~~ 111 (338)
T COG0477 47 AFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP--------------N-VGLALLLILRLLQGLGGGGL 111 (338)
T ss_pred HHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc--------------c-chHHHHHHHHHHHHhhhHHH
Confidence 34555566668999999999999877777665444433333332 0 02344445555578888888
Q ss_pred hhccchhhhhhccc
Q 012976 420 YSVPYALVSIRTES 433 (452)
Q Consensus 420 ~~~~~~~~~~~~~~ 433 (452)
.+...+++.+..|+
T Consensus 112 ~~~~~~~~~~~~~~ 125 (338)
T COG0477 112 LPVASALLSEWFPE 125 (338)
T ss_pred HHHHHHHHHHhcCc
Confidence 88888999999886
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.45 E-value=13 Score=34.33 Aligned_cols=120 Identities=12% Similarity=0.113 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHhCCCch--hhHHHHhhhhhhhhhcccccccccccccCCCCCc-chhHHHHHHHHHHHHHHHhccc
Q 012976 46 GWALQLSLLTPYVQELGIPHA--WASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRR-RPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~--~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr-~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
+++-...+....-++..-++. .-|..=++..+.++++.+..|++.- ++.|+ ..++..+...-+..++.+..++
T Consensus 249 g~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i----~w~r~g~~ll~~~s~~~agllf~m~~t~ 324 (433)
T KOG3810|consen 249 GYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNI----NWNRWGDLLLAVGSAVQAGLLFIMAQTQ 324 (433)
T ss_pred hhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheee----ccchhhHHHHHHHHHHhhhhhhhhhccc
Confidence 344444455555566542222 2355556677778888889999877 55555 3344444444444455454444
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 123 DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
++ |...++..++..-+....+....-+++....+.-| ..+|+.....
T Consensus 325 ~I---------------w~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~g--LvFGiNTFvA 371 (433)
T KOG3810|consen 325 HI---------------WVCYAGYVLFRVIYQLTITIATFQIARNLSSELFG--LVFGINTFVA 371 (433)
T ss_pred ce---------------ehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhhe--eeeehHHHHH
Confidence 44 55666666666666666777777788887777777 7777665443
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.64 E-value=2.7 Score=39.63 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=73.4
Q ss_pred HHHHHHHHHH---hCC-CchhhHHHHhh-hhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccc--
Q 012976 51 LSLLTPYVQE---LGI-PHAWASIIWLC-GPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSAD-- 123 (452)
Q Consensus 51 ~~~~~~~~~~---~g~-s~~~~g~~~~~-~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~-- 123 (452)
....|.+..+ -+. ++...-++..+ +.+...++.+...++-+ + +||+..+.. +.=.+...++.++..
T Consensus 263 LsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~----~-~~r~l~i~v--~lR~lfiPlF~~cn~~~ 335 (406)
T KOG1479|consen 263 LSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTW----P-DPRKLTIPV--LLRLLFIPLFLLCNYPP 335 (406)
T ss_pred eEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccC----C-CCceehHHH--HHHHHHHHHHHHhccCC
Confidence 3455666522 222 23344455555 78888998888777766 4 355544432 223333333332211
Q ss_pred cccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhh
Q 012976 124 IGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYAT 196 (452)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~ 196 (452)
. ......-++.++...++++..|=.......+.++..|++++. .+..+.......|-..|..+
T Consensus 336 ~--------~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e--~aG~~m~~fl~~Gl~~G~~~ 398 (406)
T KOG1479|consen 336 L--------PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKE--AAGNLMVFFLVGGLALGSLL 398 (406)
T ss_pred C--------CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChHHHH--HHHHHHHHHHHHHHHHhhHH
Confidence 1 111112244555666677777666666778888888888887 66667777777776766544
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.48 E-value=2 Score=40.97 Aligned_cols=137 Identities=12% Similarity=0.103 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHh----hC
Q 012976 285 GTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRK----WG 360 (452)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr----~g 360 (452)
+.+..+..+.+-..+++..-..|.++|+. . .+...+. .++......+.+.+..++.|..+|| +|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~-lGvphk~----------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~G 99 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-S-LGVPHKW----------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYG 99 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-H-cCCCccc----------ccccccccccccceecccccccccccccccc
Confidence 34455555666667777788888999883 2 2211111 1222223455566777888999986 68
Q ss_pred Cch-hHHHHHHHHHHHHHHHHHHHHhhhccccCCCC--CCCC-chHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccC
Q 012976 361 AGF-IWGISNILMALCFLAMLILYYVAIHMDYRGHD--LPPN-GIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGL 436 (452)
Q Consensus 361 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 436 (452)
||| .+..+....+++++++.+....... .+.+ .|.. ......++.+-++=++........-++..|...++++
T Consensus 100 RRRPfI~~~s~~i~~~l~Lig~aaDig~~---lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~ 176 (498)
T KOG0637|consen 100 RRRPFILAGSLLIAVSLFLIGYAADIGLL---LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAK 176 (498)
T ss_pred cccchHHHhhHHHHHHHhhhhhHhhhhHH---hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhh
Confidence 877 4555666677777777766533211 0111 0110 1112223333344455555566667888888766543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.37 E-value=25 Score=34.32 Aligned_cols=50 Identities=6% Similarity=0.040 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHH
Q 012976 139 IAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGN 190 (452)
Q Consensus 139 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~ 190 (452)
+...++...+..+.......+..+.-+.+.+|..-| ..|.+.+...++|+
T Consensus 405 f~lvI~~~~l~sf~stvmFVai~AFharISDP~IGG--TYMTLLNTvSNLGG 454 (544)
T PF13000_consen 405 FLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGG--TYMTLLNTVSNLGG 454 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch--HHHHHHHHHHhcCC
Confidence 344444555666777778888889999999999988 88888888888774
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.27 E-value=6.3 Score=36.82 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhccccccccccccc--CCCCCcchhHHHHHHHHHHHHHHHhccc
Q 012976 45 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCT--SRFGRRRPFIVCGAISIAVAVLLIGLSA 122 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~--~r~Grr~~~i~~~~~~~~~~~~~~~~~~ 122 (452)
+++...-...+.-+-+.|++..+.+++.....-.+.+.....|.++...+ +++-|+-++ -.....+...+.+..+
T Consensus 279 ~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~---R~~~~~~~t~Lv~~~~ 355 (510)
T KOG3574|consen 279 LGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPY---RLGGGLVQTALVWWTP 355 (510)
T ss_pred HHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhH---HHHHHHHHHHHHhhhc
Confidence 34444444555566899999999887764333344444445555444100 111122121 1222333344444444
Q ss_pred ccccccCCCCCCC-chhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHH
Q 012976 123 DIGWLLGDRGDFR-PRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNI 191 (452)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ 191 (452)
+.++. ++.. ...+.+.+....+.+...........+..+++.++...| ..+.+.+...++|+.
T Consensus 356 ~~~~~----~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~igg--TymTlLNTLsnLGg~ 419 (510)
T KOG3574|consen 356 TLGHS----DGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGG--TYMTLLNTLSNLGGN 419 (510)
T ss_pred ccccC----CCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCc--cHHHHHHHHHHhcCC
Confidence 44221 0111 222333344455555666666667788899999999999 889888888888754
|
|
| >PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter | Back alignment and domain information |
|---|
Probab=80.26 E-value=47 Score=33.11 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHHHHH
Q 012976 337 GLMLNSVVLGITSVLMEKLCRKWGAGF----IWGISNILMALCFLAMLI 381 (452)
Q Consensus 337 ~~~~~~~~~~i~~~~~g~l~dr~g~~~----~~~~~~~~~~~~~~~~~~ 381 (452)
.+..+.+.+.+++...+++-+.++.++ .+..+.+.-++.+....+
T Consensus 302 ~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~ 350 (521)
T PF02990_consen 302 AIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFI 350 (521)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHH
Confidence 344467777777788888888776432 333444444443433333
|
Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.88 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.84 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.39 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.36 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.22 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.18 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.1 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.72 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.6 |
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=237.14 Aligned_cols=344 Identities=12% Similarity=0.064 Sum_probs=242.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHH
Q 012976 27 KVPLRKLLKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVC 106 (452)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~ 106 (452)
+..++.++......+...+......+.+|.+.+++|.++.+.+++.+++.++..++.++.|+++| |+|||+.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d----r~g~r~~l~~~ 97 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK----KLSYKAGIITG 97 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH----HSCHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH----HhcchHHHHHH
Confidence 34455556666666666777778888899988999999999999999999999999999999999 99999988875
Q ss_pred HHHHHHHHHHHH---hcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH
Q 012976 107 GAISIAVAVLLI---GLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (452)
Q Consensus 107 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (452)
..+ ..++..+. ...++ ++.+++.+++.|++.+...+...++++|++|+++|+ +++++.+
T Consensus 98 ~~~-~~~~~~~~~~~~~~~~---------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 159 (438)
T 3o7q_A 98 LFL-YALGAALFWPAAEIMN---------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGH--FRLNLAQ 159 (438)
T ss_dssp HHH-HHHHHHHHHHHHHTTC---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHH--HHHHHHH
T ss_pred HHH-HHHHHHHHHhcccccc---------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHH--HHHHHHH
Confidence 444 44444444 44444 377888999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHhhccccc-cceeccccc------------cccccccccchhHHHHHHHHHHHHHHHHHHhc-cccCCCC
Q 012976 184 LFMAVGNILGYATGSFSG-WFKILPFTL------------TSACNVDCANLKSAFFLDVIFIAITTCISASA-AHEVPLG 249 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~-~~~~~p~~~------------~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~-~~e~~~~ 249 (452)
....+|..+++.+++.+. ... +... .........+||+.|++.+++.++..++.++. .||++++
T Consensus 160 ~~~~~g~~~g~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 237 (438)
T 3o7q_A 160 TFNSFGAIIAVVFGQSLILSNV--PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD 237 (438)
T ss_dssp HHHHHHHHHHHHHTTHHHHTSS--CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 999999999999988732 110 0000 00000000028999987776665555444332 3333221
Q ss_pred CCCCCCCCCcccccCccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHH-HHhHhhCCCCCcccccc
Q 012976 250 SHDQSAPFSEEGHEQSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDW-MGREIYGGEPNEGQNYA 328 (452)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 328 (452)
++++ ++ +++..++.++.+|+ |.++...+..++..........|.+.| +. +.++.++
T Consensus 238 ~~~~-------~~------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~------- 294 (438)
T 3o7q_A 238 NHSD-------AK------QGSFSASLSRLARI--RHWRWAVLAQFCYVGAQTACWSYLIRYAVE-EIPGMTA------- 294 (438)
T ss_dssp CCCC-------SS------TTSHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSTTCCH-------
T ss_pred cccc-------cc------ccchhhhHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccCCcch-------
Confidence 1111 00 11112345667777 788888888888777777888888888 53 3333221
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHH
Q 012976 329 TGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALII 408 (452)
Q Consensus 329 ~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (452)
...........++..++.++.+++.||+|||+.+..+.++.+++++++.+.+ +.+ ....
T Consensus 295 ---~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~~ 353 (438)
T 3o7q_A 295 ---GFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-----------------GHV-GLIA 353 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC-----------------HHH-HHHH
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC-----------------CcH-HHHH
Confidence 1222334446777888999999999999999999888888877776665542 233 3444
Q ss_pred HHHHhHHhHhHhhccchhhhhhcccccCccc
Q 012976 409 FTILGGPLAITYSVPYALVSIRTESLGLGQG 439 (452)
Q Consensus 409 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g 439 (452)
..+.|++.+...+..+++..|..|++ ++++
T Consensus 354 ~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (438)
T 3o7q_A 354 LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYG 383 (438)
T ss_dssp HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc-ccch
Confidence 57778888888888889988888866 4443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=242.11 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=241.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHH
Q 012976 34 LKVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAV 113 (452)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~ 113 (452)
+......+...+......+.+|.+.+++ .++.+.+++.+++.++..++++++|+++| |+|||+.+++ +.+...+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~g~r~~l~~-~~~~~~~ 104 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPA-GLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHH----hcCchHHHHH-HHHHHHH
Confidence 3344444555555566677888888888 99999999999999999999999999999 9999997777 4455555
Q ss_pred HHHHHhc----ccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 114 AVLLIGL----SADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 114 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
+.++..+ .++. +.+++.+++.|++.+...+...+++.|++|+++|+ +++++.+....+|
T Consensus 105 ~~~~~~~~~~~~~~~---------------~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g 167 (451)
T 1pw4_A 105 VMLFMGFVPWATSSI---------------AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVG 167 (451)
T ss_dssp HHHHHHHCHHHHSSS---------------SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhccccH---------------HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhh--HHHHHHHHHHHHH
Confidence 5556655 5444 56778899999999999999999999999999999 9999999999999
Q ss_pred HHHHHhhccccccceeccccccccccccccc-hhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccc---ccCc
Q 012976 190 NILGYATGSFSGWFKILPFTLTSACNVDCAN-LKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEG---HEQS 265 (452)
Q Consensus 190 ~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~---~~~~ 265 (452)
.++++.+++.+... .+ ||+.|++.+++.++..++.++..||++++...+++++.+++ +.++
T Consensus 168 ~~~g~~~~~~l~~~---------------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (451)
T 1pw4_A 168 GGIPPLLFLLGMAW---------------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNE 232 (451)
T ss_dssp HTSHHHHHHHHHHH---------------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------
T ss_pred HHHHHHHHHHHHHH---------------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchh
Confidence 99999998762211 16 99999998888877777777778887654332211111110 0000
Q ss_pred cchHHHHHHH--HHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHH
Q 012976 266 SDVHEAFLWE--LFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (452)
Q Consensus 266 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 343 (452)
+++++...++ .++.+++ +.++...+..++..........+.+.|+.+ .++.+ ............+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~----------~~~~~~~~~~~~~ 299 (451)
T 1pw4_A 233 KAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKE-VKHFA----------LDKSSWAYFLYEY 299 (451)
T ss_dssp ------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTT-BSCCC----------HHHHHHHHHHHHH
T ss_pred hhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCC----------HHHHHHHHHHHHH
Confidence 0000111111 2445666 888888888888888888888888887742 12211 1122333444677
Q ss_pred HHHHHHHHHHHHHHhh--CCchhHHHHHHHHH-HHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHh
Q 012976 344 VLGITSVLMEKLCRKW--GAGFIWGISNILMA-LCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITY 420 (452)
Q Consensus 344 ~~~i~~~~~g~l~dr~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 420 (452)
+.+++.++.+++.||+ |+|+.+..+..+.. ++++++.+.. . .+.+.......+.|++.+...
T Consensus 300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~g~~~~~~~ 364 (451)
T 1pw4_A 300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP--------------A-GNPTVDMICMIVIGFLIYGPV 364 (451)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC--------------T-TCHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc--------------c-cCHHHHHHHHHHHHHHHhchH
Confidence 8888999999999999 99988877766655 4444433321 1 134556666777888888888
Q ss_pred hccchhhhhhcccccCcccceeeeee
Q 012976 421 SVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 421 ~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
+..++++.|..|++.+| .+.|+.+
T Consensus 365 ~~~~~~~~~~~~~~~~g--~~~~~~~ 388 (451)
T 1pw4_A 365 MLIGLHALELAPKKAAG--TAAGFTG 388 (451)
T ss_dssp HHHHHHHHHTSCTTHHH--HHHHHHH
T ss_pred HHHHHHHHHHhchhhhh--hHHHHHH
Confidence 88889999999998764 4444443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=217.12 Aligned_cols=356 Identities=13% Similarity=0.020 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----hCCCchhhHHHHhhhhhhhhhcccccccccccccCC-CCCcchh
Q 012976 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QE-----LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSR-FGRRRPF 103 (452)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r-~Grr~~~ 103 (452)
+..+......+...+.++....+++.|+ ++ +|.++.+.+++.+++.++..+++++.|+++| | +|||+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----r~~g~r~~~ 88 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD----RIIGARPAV 88 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSCHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccccchHHH
Confidence 3455566666777777788888888888 44 8999999999999999999999999999999 9 8999988
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHH
Q 012976 104 IVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFS 183 (452)
Q Consensus 104 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 183 (452)
+. +.+...++..+..++++. +.+++.+.+.|++.+...+...++++|++|+++|+.+.+.+..+
T Consensus 89 ~~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 152 (491)
T 4aps_A 89 FW-GGVLIMLGHIVLALPFGA---------------SALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFV 152 (491)
T ss_dssp HH-HHHHHHHHHHHHHSCCST---------------THHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHhhhH---------------HHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHH
Confidence 77 445555556666666554 56778888999999999999999999999998833117888888
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
...++|..+++.+++.+... .+|++.|++.++..++..++..+..++..+++.++.+.+.++++.
T Consensus 153 ~~~~~g~~~~~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
T 4aps_A 153 FGINLGAFIAPLIVGAAQEA---------------AGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEV 217 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---------------SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh---------------hhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchh
Confidence 99999999999998873221 289999998876666555554444343322211111110000000
Q ss_pred Ccc-c------------------------hH-HH----------------HHHHHHH--HHhcchHHHHHHHHHHHHHHH
Q 012976 264 QSS-D------------------------VH-EA----------------FLWELFG--TFRYFSGTIWIILIVTALTWL 299 (452)
Q Consensus 264 ~~~-~------------------------~~-~~----------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 299 (452)
++. + ++ .. ..++... ..++.....+.+....++.+.
T Consensus 218 ~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (491)
T 4aps_A 218 KPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWA 297 (491)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 00 0000000 001100123333444444444
Q ss_pred hhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH-----HHHHHHHH
Q 012976 300 GWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG-----ISNILMAL 374 (452)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~-----~~~~~~~~ 374 (452)
.+.....+.+.|.. +.++.+.... ........+...++.++.+++.||+|||+... .+..+.++
T Consensus 298 ~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~ 366 (491)
T 4aps_A 298 IEEQGSVVLATFAA-ERVDSSWFPV----------SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGL 366 (491)
T ss_dssp HHGGGGTHHHHHHH-HSCCCSSSCS----------GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHH-HHhccCccCH----------HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 44444455555653 3233221111 11122345666677889999999999986544 67777777
Q ss_pred HHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccc
Q 012976 375 CFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGG 440 (452)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~ 440 (452)
++.++........+ +...+.+.......+.|++.+...+..++++.|..|++.|+++.
T Consensus 367 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~ 424 (491)
T 4aps_A 367 SFLLMAIPGALYGT--------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMM 424 (491)
T ss_dssp HHTTTHHHHHHCCC--------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSST
T ss_pred HHHHHHHHHHhcCC--------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHH
Confidence 76666554321110 00113445566677888888888888899999999999875533
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.7e-26 Score=212.73 Aligned_cols=326 Identities=13% Similarity=0.046 Sum_probs=227.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHH
Q 012976 35 KVASVAGGIQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVA 114 (452)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~ 114 (452)
.+....+...+......+.+|.+.+++|.++.+.+++.++..++..+++++.|+++| |+||||.++.+. ....++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~r~~~~~~~-~~~~~~ 78 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD----RVGRRPVILVGM-SIFMLA 78 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT----TSCCCCCCHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCCchhHHHHH-HHHHHH
Confidence 344555566667777888889889999999999999999999999999999999999 999999988744 444555
Q ss_pred HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHH
Q 012976 115 VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGY 194 (452)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~ 194 (452)
.....+.++ .+.+++.+.+.|++.+...+...+++.|++|+++|+ ++++..+....+|..+++
T Consensus 79 ~~~~~~~~~---------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 141 (375)
T 2gfp_A 79 TLVAVTTSS---------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLR--HANSLLNMGILVSPLLAP 141 (375)
T ss_dssp HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCC--SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHH--HHHHHHHHHHHHHHHhhH
Confidence 555555444 367778899999999999999999999999999999 999999999999999999
Q ss_pred hhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCccchHHHHHH
Q 012976 195 ATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVHEAFLW 274 (452)
Q Consensus 195 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (452)
.+++.+.... +|++.|++.+++.++..+...+..||++++++++++ . + +
T Consensus 142 ~~~~~l~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~----~ 190 (375)
T 2gfp_A 142 LIGGLLDTMW---------------NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTR------L------L----T 190 (375)
T ss_dssp HHHHHSSCHH---------------HHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCCCC------T------T----T
T ss_pred HHHHHHHHhc---------------cHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccccc------H------H----H
Confidence 9988733221 899999988877766666566667776544322100 0 0 0
Q ss_pred HHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 012976 275 ELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEK 354 (452)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~ 354 (452)
+.++.+|+ |+++...+..++.......+..+.+.|+.+.. + + +............++..++.++.++
T Consensus 191 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g--------~--~~~~~g~~~~~~~~~~~~~~~~~~~ 257 (375)
T 2gfp_A 191 SYKTLFGN--SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVL-G--------L--SSMTVSILFILPIPAAFFGAWFAGR 257 (375)
T ss_dssp CSTHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHH-H--------H--HHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHhcC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C--------C--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12334556 77888877777777777777777777664321 1 1 1111222333456777778888888
Q ss_pred HHHhhCCchhHHHHHHH-HHHHHH--HHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhc
Q 012976 355 LCRKWGAGFIWGISNIL-MALCFL--AMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRT 431 (452)
Q Consensus 355 l~dr~g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 431 (452)
+.||.+++ +..+... ...+.. ...... ++ +.+...+...+.|++.+...+...+++.|..
T Consensus 258 l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 258 PNKRFSTL--MWQSVICCLLAGLLMWIPDWFG---VM------------NVWTLLVPAALFFFGAGMLFPLATSGAMEPF 320 (375)
T ss_dssp TTTHHHHH--HHHHHHHHHHTSSSSSHHHHHH---HH------------HHHHHHHHHHHHHHHHHHTSSTTHHHHHTHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc---cc------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 88888762 2233322 222222 122211 00 3445556677888888888899999999999
Q ss_pred ccccCcccceeeeee
Q 012976 432 ESLGLGQGGHFYGLY 446 (452)
Q Consensus 432 ~~~~~g~g~~~g~~n 446 (452)
| +++ |.+.|+.|
T Consensus 321 p-~~~--g~~~g~~~ 332 (375)
T 2gfp_A 321 P-FLA--GTAGALVG 332 (375)
T ss_dssp H-HHH--HHHHHHHH
T ss_pred C-ccc--chHHHHHH
Confidence 8 554 44555444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=202.44 Aligned_cols=354 Identities=13% Similarity=0.072 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHhCC--------CchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhc
Q 012976 49 LQLSLLTPYVQELGI--------PHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGL 120 (452)
Q Consensus 49 ~~~~~~~~~~~~~g~--------s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~ 120 (452)
.....++.+.++++. +..+.|++.+.+.++.+++++++|+++| |+|||+.+++...+..+. .+...+
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laD----r~GRk~~l~~~~~l~~i~-~i~~a~ 104 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSN----RFGRRDSLKIAAVLFFIS-GVGSAW 104 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHH-HHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHH-HHHHHH
Confidence 334455555555532 2346788999999999999999999999 999999988855544444 444443
Q ss_pred ccccccccCC---CCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhc
Q 012976 121 SADIGWLLGD---RGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATG 197 (452)
Q Consensus 121 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~ 197 (452)
.+........ ........++.++++|++.|++.+...+...++++|+.|+++|+ +..+..+.+..+|.++++.++
T Consensus 105 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg--~~~~~~~~~~~~g~~~~~~~~ 182 (491)
T 4gc0_A 105 PELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRG--KLVSFNQFAIIFGQLLVYCVN 182 (491)
T ss_dssp TTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhh--hhHHhhhhhhhhhhhhhhhcc
Confidence 2211000000 00012345678899999999999999999999999999999999 999999999999998888776
Q ss_pred cccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC----------ccc
Q 012976 198 SFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ----------SSD 267 (452)
Q Consensus 198 ~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~----------~~~ 267 (452)
....... .. ......+|+..+....+. .+..++..++.||+|+....+.+.++..+..+ +..
T Consensus 183 ~~~~~~~------~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~ 254 (491)
T 4gc0_A 183 YFIARSG------DA-SWLNTDGWRYMFASECIP-ALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254 (491)
T ss_dssp HHHHTTS------CT-TTTTTTHHHHHHHTTHHH-HHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccc------cc-ccccchhhHHHhhhhhhh-hhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHH
Confidence 5411100 00 000112566655554443 34445566778998764332222111100000 000
Q ss_pred hHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHH
Q 012976 268 VHEAFLWEL-----FGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNS 342 (452)
Q Consensus 268 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 342 (452)
..+....+. +....+.++.........+....+...+..|.+.... .. +.+ ...........+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~----------~~~~~~~~~~~~ 322 (491)
T 4gc0_A 255 EIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK-TL-GAS----------TDIALLQTIIVG 322 (491)
T ss_dssp HHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HS-SCC----------HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHH-hc-CCC----------ccchhhHHHHHH
Confidence 000000000 0111111222222233333333344444445544432 11 100 011122233456
Q ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHh-Hhh
Q 012976 343 VVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAI-TYS 421 (452)
Q Consensus 343 ~~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 421 (452)
+...++.++.+++.||+|||+.+..+....+++++.+........ ..+..++...+...+++. ..+
T Consensus 323 ~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 389 (491)
T 4gc0_A 323 VINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA-------------PGIVALLSMLFYVAAFAMSWGP 389 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CHHHHHHHHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc-------------chHHHHHHHHHHHHHHHhHHHH
Confidence 777788899999999999999999998888888776655531111 122222222222222222 345
Q ss_pred ccchhhhhhcccccCccccee
Q 012976 422 VPYALVSIRTESLGLGQGGHF 442 (452)
Q Consensus 422 ~~~~~~~~~~~~~~~g~g~~~ 442 (452)
+.+.+.+|.+|.+.|++|.++
T Consensus 390 ~~~~~~~E~fPt~~R~~~~g~ 410 (491)
T 4gc0_A 390 VCWVLLSEIFPNAIRGKALAI 410 (491)
T ss_dssp HHHHHHHHSSCTTTHHHHHHH
T ss_pred HHHHHHHHhCCHhHHHHHHHH
Confidence 678899999999988765543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-23 Score=199.01 Aligned_cols=340 Identities=11% Similarity=0.072 Sum_probs=191.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 29 PLRKLLKVASVAGGIQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+.++.+......+.....+....+++|.+++ ++|.++.+.|++.++..++..++++++|+++| |+||||++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD----r~Grr~~l~~~~ 80 (417)
T 2cfq_A 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWII 80 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT----TSTTCCHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH
Confidence 3455565555555555666777789999885 58999999999999999999999999999999 999999887744
Q ss_pred HHHHHHH--HHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCc--cccchhhhhhHHH
Q 012976 108 AISIAVA--VLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGK--DHRRTRVANAYFS 183 (452)
Q Consensus 108 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~ 183 (452)
.+..+.. .....+.+.. ......++.+.+++.+...+.......++.++ ++++ ...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~ 144 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLL--------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRAR 144 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHH--------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHT--CCHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcc--cchHHHH
Confidence 4332211 1111111000 00011122222233333333333334444433 3345 5666666
Q ss_pred HHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccccc
Q 012976 184 LFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHE 263 (452)
Q Consensus 184 ~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~ 263 (452)
....+|..+++.+++++.. .+|++.|++.++..++..+...+..||+++.. ++++++ +++
T Consensus 145 ~~~~~g~~~~~~l~~~l~~----------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~- 204 (417)
T 2cfq_A 145 MFGCVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSA-TVANAV--GAN- 204 (417)
T ss_dssp SSTTTHHHHHHHHHHHHHH----------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSS-CSSSSS--SSC-
T ss_pred HHHHHHHHHHHHHHHHHHH----------------hchhHHHHHHHHHHHHHHHHHHHcCccccccc-cccccc--ccc-
Confidence 6778888888887766211 16888887765554333333222233332111 110000 000
Q ss_pred CccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHH
Q 012976 264 QSSDVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSV 343 (452)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 343 (452)
+++ ...++.++.+++ |+++...+..++....+..+..+.+.|+. +.++.. ..+.........+..+
T Consensus 205 ~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~g~~~~~~~~ 270 (417)
T 2cfq_A 205 HSA----FSLKLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SFFATG-------EQGTRVFGYVTTMGEL 270 (417)
T ss_dssp CCC----CCHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSSSH-------HHHTHHHHHHHHHHHH
T ss_pred ccc----ccHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc-------CCChhHHHHHHHHHHH
Confidence 000 112344566777 77776665545444444444444566653 222100 0011111122333456
Q ss_pred HHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhcc
Q 012976 344 VLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVP 423 (452)
Q Consensus 344 ~~~i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 423 (452)
..+++.++.+++.||+|||+++..+..+.+++++.+.+.+ +.+..++...+.+++.+...+..
T Consensus 271 ~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-----------------SHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-----------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677889999999999999988888877776655443321 23344444455566665555556
Q ss_pred chhhhhhcccccCccc
Q 012976 424 YALVSIRTESLGLGQG 439 (452)
Q Consensus 424 ~~~~~~~~~~~~~g~g 439 (452)
+.+++|..|++.||++
T Consensus 334 ~~~~~~~~p~~~~g~~ 349 (417)
T 2cfq_A 334 FKYITSQFEVRFSATI 349 (417)
T ss_dssp HHHHHHHSCHHHHHHH
T ss_pred HHHHHHHCCHHHHHHH
Confidence 7899999999887553
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-20 Score=186.03 Aligned_cols=172 Identities=14% Similarity=0.198 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhC------CCchhhHHHHhhhhhhhhhcccccccccccccCCC-CCcchhH
Q 012976 33 LLKVASVAGGIQFGWALQLSLLTPYV-QELG------IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF-GRRRPFI 104 (452)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g------~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~-Grr~~~i 104 (452)
.+.+....+...+.++...++++.|+ +++| .++.+.+++.+++.++..++.++.|+++| |+ |||+.++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d----r~~g~r~~~~ 89 (524)
T 2xut_A 14 IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD----RFFGKYNTIL 89 (524)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT----TSSCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcchHHHH
Confidence 34455555666677777778888887 6689 99999999999999999999999999999 99 9999887
Q ss_pred HHHHHHHHHHHHHHhccc-ccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH--
Q 012976 105 VCGAISIAVAVLLIGLSA-DIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-- 181 (452)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 181 (452)
+ +.+...++.++..+.+ + .+.+++.+.+.|++.+...+...+++.|++|+++|+ ++.+.
T Consensus 90 ~-~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~--~~~~~~~ 151 (524)
T 2xut_A 90 W-LSLIYCVGHAFLAIFEHS---------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKS--LAQKAFD 151 (524)
T ss_dssp H-HHHHHHHHHHHHHHTSSC---------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTT--HHHHHHH
T ss_pred H-HHHHHHHHHHHHHHhccc---------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccchH--HHHHHHH
Confidence 7 4444555555555554 3 366778888999999999999999999999999997 66555
Q ss_pred -HHHHHHHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 012976 182 -FSLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISAS 241 (452)
Q Consensus 182 -~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 241 (452)
.....++|..+++.+++.+... .+|++.|++.+++.++..++..+
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~---------------~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 152 MFYFTINFGSFFASLSMPLLLKN---------------FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHTSTHHHHT---------------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888763211 28999999887776555444433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-13 Score=128.68 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCC--CCcchhHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRF--GRRRPFIVC 106 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~--Grr~~~i~~ 106 (452)
.+.++...+..+...........+.|.++++ +|.++.+.+++.+...++..++.++.|+++| |+ |||+.++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVF 326 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCchhHHHH
Confidence 3556666666666667777788899999866 8999999999999999999999999999999 98 898877775
Q ss_pred HHHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHH
Q 012976 107 GAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFM 186 (452)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 186 (452)
..+...++..+..+.++ ...+...+...+.+++.+...+...+++.|.+|+++|+ ++.++.+...
T Consensus 327 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~ 391 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPA-------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFG 391 (451)
T ss_dssp HHHHHHHHHHHTTSCCT-------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhh--hHHHHHHHHH
Confidence 55544355555544321 11344555566677777777778889999999999999 9999999999
Q ss_pred HH-HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhc
Q 012976 187 AV-GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASA 242 (452)
Q Consensus 187 ~~-g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 242 (452)
.+ |..+++.+.+.+... .+++..|++.+++.++..++.++.
T Consensus 392 ~~~g~~~~~~~~g~l~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 392 YLGGSVAASAIVGYTVDF---------------FGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHHS---------------SCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh---------------cCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999888773221 178888888877766665555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.8e-13 Score=128.94 Aligned_cols=181 Identities=16% Similarity=0.080 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccc
Q 012976 46 GWALQLSLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIG 125 (452)
Q Consensus 46 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~ 125 (452)
+......+.+.+.+..+.+............+...++.++.+++.| |+|||+.++..... ..++..........
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d----r~Grr~~~~~~~~~-~~~~~~~l~~~~~~- 365 (491)
T 4gc0_A 292 GINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD----KFGRKPLQIIGALG-MAIGMFSLGTAFYT- 365 (491)
T ss_dssp CHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCSHHHHHHHHHH-HHHHHHHHHHHHHT-
T ss_pred hhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH----hhcCcchhccchHH-HHHHHHHHHHHHhc-
Confidence 4555666777777888988888877777888888999999999999 99999987774443 33333333222111
Q ss_pred cccCCCCCCCchhHHHHHHHHHHHHHhhhh-cchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccce
Q 012976 126 WLLGDRGDFRPRAIAVFVFGFWILDVANNM-TQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFK 204 (452)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~ 204 (452)
.... +..++...+...+.+. ..+..+.+.+|.+|.+.|+ .+.|+......+++.+++.+.+...
T Consensus 366 --------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~--~~~g~~~~~~~~~~~i~~~~~p~l~--- 430 (491)
T 4gc0_A 366 --------QAPG--IVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRG--KALAIAVAAQWLANYFVSWTFPMMD--- 430 (491)
T ss_dssp --------TCCH--HHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHH--HHHHHHHHHHHHHHHHHHTHHHHHC---
T ss_pred --------ccch--HHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1111 1112222222222222 3355678999999999999 8999999999999988877654411
Q ss_pred eccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 012976 205 ILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQ 253 (452)
Q Consensus 205 ~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 253 (452)
.........++...|++.++++++..++.++++||++.++.+|
T Consensus 431 ------~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 431 ------KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 1100000014556788888888888888889999998776543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.1e-11 Score=114.94 Aligned_cols=182 Identities=9% Similarity=0.014 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC---CCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPYVQE-LG---IPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCG 107 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g---~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~ 107 (452)
+.+......+.....+.....+.|.|.++ ++ .+....++..++..+...++.++.|+++| |+|||+.++. +
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~d----r~g~~~~l~~-~ 295 (417)
T 2cfq_A 221 KLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLL-A 295 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCHHHHHHH-H
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcHHHHHHH-H
Confidence 33333333333333444444456767644 33 22345677777777888888999999999 9999987766 4
Q ss_pred HHHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhH-HHHHH
Q 012976 108 AISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAY-FSLFM 186 (452)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~ 186 (452)
.....+......+.++. +.+++...+.+++.+...+....+++|.+|++.|+ .+.+. .+...
T Consensus 296 ~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~ 358 (417)
T 2cfq_A 296 GTIMSVRIIGSSFATSA---------------LEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFK 358 (417)
T ss_dssp HHHHHHHHHHHTTCCSH---------------HHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHH--HHHHHHHTTTH
T ss_pred HHHHHHHHHHHHHhccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH--HHHHHHHHHHH
Confidence 44444444444333221 33334444455555555566788999999999999 77887 47778
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCC
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGS 250 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~ 250 (452)
.+|..++|.+++.+... .+++..|.+.+++.++..++.++..||+++.+
T Consensus 359 ~lg~~~gp~l~G~l~~~---------------~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 359 QLAMIFMSVLAGNMYES---------------IGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHTHHHHTHHHH---------------SHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred hHHHHHhhhhHHHHHHh---------------cCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 89999999888763221 16777888887777776666666666655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-11 Score=117.01 Aligned_cols=143 Identities=11% Similarity=0.062 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-CCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHH
Q 012976 32 KLLKVASVAGGIQFGWALQLSLLTPY-VQEL-GIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAI 109 (452)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~ 109 (452)
+.+......+...........+.|.| +++. |.++.+.+++.++..++..++.++.|+++| |+|||+.++... +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~----r~~~~~~~~~~~-~ 333 (438)
T 3o7q_A 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS----RFAPHKVLAAYA-L 333 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHH-H
Confidence 34444445455555666777888999 7665 999999999999999999999999999999 999998877744 4
Q ss_pred HHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHH
Q 012976 110 SIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVG 189 (452)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g 189 (452)
...++..+..+.++. + ..+...+.+++.+...+...++..|.+|++ ++ .+.++.. ...+|
T Consensus 334 ~~~~~~~~~~~~~~~---------------~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~g 393 (438)
T 3o7q_A 334 IAMALCLISAFAGGH---------------V-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TK--YGSSFIV-MTIIG 393 (438)
T ss_dssp HHHHHHHHHHHCCHH---------------H-HHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HH--HHHHHHH-HTTHH
T ss_pred HHHHHHHHHHHcCCc---------------H-HHHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc--chhhHHH-HHHHH
Confidence 445555555444332 1 223345667778888888899999999866 77 6777666 56688
Q ss_pred HHHHHhhccc
Q 012976 190 NILGYATGSF 199 (452)
Q Consensus 190 ~~ig~~~~~~ 199 (452)
..+++.+.+.
T Consensus 394 ~~~~~~~~g~ 403 (438)
T 3o7q_A 394 GGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888776
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=112.65 Aligned_cols=175 Identities=10% Similarity=0.037 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhH----HHHHHHHHHHHHHHh
Q 012976 45 FGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFI----VCGAISIAVAVLLIG 119 (452)
Q Consensus 45 ~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i----~~~~~~~~~~~~~~~ 119 (452)
..+.....+++.+.++ .+.+..+.+++.+...+...++.++.|+++| |+|||+... ..+.....++..+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 297 AIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWT----AWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHH----HTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHH----HHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 3444445566777754 6777677888888888889999999999999 999886543 123344444433333
Q ss_pred cccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 120 LSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
...... + .......+...+...+.+++.+...+...+++.|..|+++|+ ++.|+.+....+|..+++.+.+.
T Consensus 373 ~~~~~~----~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALY----G--TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNS--QMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHC----C--CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSS--SSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhc----C--CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000 0 001112244556667778888888888999999999999999 99999999999999999988776
Q ss_pred cccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 200 SGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 200 ~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
... .++...|...+++.++..++.++..++.+
T Consensus 445 ~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 445 YNA----------------KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp GGG----------------SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred Hhc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 15566777777777666666666655544
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-09 Score=101.58 Aligned_cols=150 Identities=11% Similarity=-0.042 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.++.+......+...........+.|.+.++ +|.++.+.+++.+...++..++.++.|+++| |+|+| ......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----r~~~~--~~~~~~ 271 (375)
T 2gfp_A 198 NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK----RFSTL--MWQSVI 271 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT----HHHHH--HHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--HHHHHH
Confidence 3445555555555566666777788888754 8999999999999999999999999999999 87762 222111
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
.....+..+...... .....+...+...+.+++.+...+...++..|..| ++|+ ++.++.+....+
T Consensus 272 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g--~~~g~~~~~~~~ 337 (375)
T 2gfp_A 272 CCLLAGLLMWIPDWF-----------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAG--TAGALVGGLQNI 337 (375)
T ss_dssp HHHHTSSSSSHHHHH-----------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccc--hHHHHHHHHHHH
Confidence 111111111111000 00123445566677788888888999999999998 8899 999999999999
Q ss_pred HHHHHHhhccc
Q 012976 189 GNILGYATGSF 199 (452)
Q Consensus 189 g~~ig~~~~~~ 199 (452)
|..+++.+.+.
T Consensus 338 g~~~~~~~~g~ 348 (375)
T 2gfp_A 338 GSGVLASLSAM 348 (375)
T ss_dssp HHHCCSTTCTH
T ss_pred HHHHHHHHHHH
Confidence 99888877665
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=92.99 Aligned_cols=136 Identities=11% Similarity=0.134 Sum_probs=82.4
Q ss_pred HHHHHHhCCCc-hhhHHHHhhhhhhhhhccccccccc-ccccCCCCCcc---hhHHHHHHHHHHHHHHHhcccccccccC
Q 012976 55 TPYVQELGIPH-AWASIIWLCGPVSGLFVQPLVGHFS-DRCTSRFGRRR---PFIVCGAISIAVAVLLIGLSADIGWLLG 129 (452)
Q Consensus 55 ~~~~~~~g~s~-~~~g~~~~~~~~~~~i~~~~~G~l~-Dr~~~r~Grr~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (452)
+.+..+.+.+. ...+.+.....+...+..++.+++. |+.+ |.|+|. ..+..+.+...++..+........
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---- 397 (524)
T 2xut_A 323 ILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIE-RMGVKLTALRKMGAGIAITGLSWIVVGTIQLMM---- 397 (524)
T ss_dssp HHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC-------------CCHHHHHTHHHHHHHHHHTTTTTTTTT----
T ss_pred HHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 33334444332 2466777777777777888888775 2110 433321 123334444555554443322100
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccc
Q 012976 130 DRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSF 199 (452)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~ 199 (452)
+ .......+.+++...+.+++.+...+...+++.|..|+++|+ +++|+.+....+|..+++.+.+.
T Consensus 398 ~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~g~~~g~~~~g~ 463 (524)
T 2xut_A 398 D--GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKG--TIMSFWTLSVTVGNLWVLLANVS 463 (524)
T ss_dssp T--TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCT--TTHHHHGGGHHHHHHHHHHHHHH
T ss_pred c--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000112244555677778888888888999999999999999 99999999999999999999877
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 452 | ||||
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-04 |
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 41/400 (10%), Positives = 98/400 (24%), Gaps = 26/400 (6%)
Query: 31 RKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHF 89
F ++ I + II+ + L QPL G
Sbjct: 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLL 66
Query: 90 SDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWIL 149
SD + G R+ + + + + + G L
Sbjct: 67 SD----KLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN--------ILVGSIVGGIYL 114
Query: 150 DVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFT 209
N A + ++ + + A + + A+G + + + F
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQF------ 168
Query: 210 LTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSSDVH 269
+ + ++F A T S++ +H + + +
Sbjct: 169 -----VFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLW 223
Query: 270 EAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYAT 329
L+ + + Y T+ G +F E+
Sbjct: 224 FLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLII 283
Query: 330 GVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWGISNILMALCFLAM--LILYYVAI 387
G L+L ++ + + + + + + I +
Sbjct: 284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343
Query: 388 HMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALV 427
+ + A+I ++L G + + A +
Sbjct: 344 RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYL 383
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 452 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.95 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.27 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.2 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=2.3e-27 Score=226.72 Aligned_cols=336 Identities=13% Similarity=0.090 Sum_probs=223.9
Q ss_pred HHHHHHHHHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCC
Q 012976 52 SLLTPYVQELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDR 131 (452)
Q Consensus 52 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (452)
..+.++++++|+|+++.|++.+++.++..++++++|+++| |+|||+.++++ .+...++..+..+.+..
T Consensus 45 ~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~D----r~g~r~~~~~~-~~~~~~~~~~~~~~~~~------- 112 (447)
T d1pw4a_ 45 ALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD----RSNPRVFLPAG-LILAAAVMLFMGFVPWA------- 112 (447)
T ss_dssp HHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH----HSCHHHHHHHH-HHHHHHHHHHHHHCHHH-------
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCchHHHHHH-HHHHHHHHhhccccchh-------
Confidence 3444566779999999999999999999999999999999 99999988774 44444444444443321
Q ss_pred CCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHHHHHHHHhhccccccceecccccc
Q 012976 132 GDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAVGNILGYATGSFSGWFKILPFTLT 211 (452)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~ig~~~~~~~~~~~~~p~~~~ 211 (452)
...++.+++.+.+.+++.+...+...+++.|++|+++|+ +++++.+.+..+|..+++.+++.....
T Consensus 113 ----~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~--~~~~~~~~~~~~g~~i~~~~~~~~~~~-------- 178 (447)
T d1pw4a_ 113 ----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERG--GIVSVWNCAHNVGGGIPPLLFLLGMAW-------- 178 (447)
T ss_dssp ----HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHH--HHHHHHHHHHHHHHTSHHHHHHHHHHH--------
T ss_pred ----hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhccc--ccccccccccchhhhhhhhhhhhHhhh--------
Confidence 011256778888899999999999999999999999999 999999999999999998876652111
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccC-----ccchHHHHHHHHHHHHhcchHH
Q 012976 212 SACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQ-----SSDVHEAFLWELFGTFRYFSGT 286 (452)
Q Consensus 212 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 286 (452)
..+|++.|++.+++.++..++.++..+|+|++...+..++.+++..+ .+++........+..+++ +.
T Consensus 179 ------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 250 (447)
T d1pw4a_ 179 ------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPN--KL 250 (447)
T ss_dssp ------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSC--HH
T ss_pred ------hhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHcC--ch
Confidence 03788889888888877777777778777655433222211111100 000000111123344556 78
Q ss_pred HHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhCCchhHH
Q 012976 287 IWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLGITSVLMEKLCRKWGAGFIWG 366 (452)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~~~~~~ 366 (452)
++......++..........+.+.|+.+. ++ .+............+..+++.++.|++.||+++++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 251 LWYIAIANVFVYLLRYGILDWSPTYLKEV-KH----------FALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTB-SC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHhhhhhhhhhcchhhhhhhcccc-cc----------cccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 88888888887777777777788776321 11 11122233344467778889999999999999876544
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchhhhhhcccccCcccceeeeee
Q 012976 367 ISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYALVSIRTESLGLGQGGHFYGLY 446 (452)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~g~~~g~~n 446 (452)
.......+.......... ....+.+...+...+.|++.+...+....+..|..|++.+| .+.|+.|
T Consensus 320 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~ 385 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWM------------NPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTG 385 (447)
T ss_dssp HHHHHHHHHHHHHHHTTS------------CCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHH
T ss_pred ccchhHHHHHHHHHHHHh------------cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHH
Confidence 444333332222222210 11114555666667778888777888888999999998864 4444433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.8e-23 Score=193.65 Aligned_cols=341 Identities=11% Similarity=0.028 Sum_probs=205.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.++.|.+....+...+......+++|.|+ +++|.|+++.|++.+++.++..+++|++|+++| |+||||++++...
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~grr~~l~~~~~ 81 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD----KLGLRKYLLWIIT 81 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHH----HHTTCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhCchHHHHHHHH
Confidence 46678888888888888888889999887 678999999999999999999999999999999 9999998887544
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCcc--ccchhhhhhHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKD--HRRTRVANAYFSLFM 186 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~ 186 (452)
...+. ........+. .......++...+.+.+.+...........+..+++ ++. +..+......
T Consensus 82 ~~~~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 147 (417)
T d1pv7a_ 82 GMLVM-FAPFFIFIFG-----------PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSN--FEFGRARMFG 147 (417)
T ss_dssp HHHHT-HHHHHHHTHH-----------HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHS--CCHHHHHHHH
T ss_pred HHHHH-HHHHHHhhhh-----------hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhH--HHHHHHhhhh
Confidence 43333 3333332221 011111223333333333333344333333333332 233 4566677777
Q ss_pred HHHHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcccccCcc
Q 012976 187 AVGNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAAHEVPLGSHDQSAPFSEEGHEQSS 266 (452)
Q Consensus 187 ~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 266 (452)
..+..+++.+++.... .+|+..+........+..++..+..+|++..++++++.+.++++
T Consensus 148 ~~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 207 (417)
T d1pv7a_ 148 CVGWALGASIVGIMFT----------------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSA---- 207 (417)
T ss_dssp HHHHHHHHHHHHHHHH----------------HCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSCCCC----
T ss_pred cccccccccccccccc----------------ccccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhhccc----
Confidence 7788888877766211 15666666666666666666677777665544333211111111
Q ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhHhHHHhhHHHHHhHhhCCCCCcccccccccchhhHHHHHHHHHHH
Q 012976 267 DVHEAFLWELFGTFRYFSGTIWIILIVTALTWLGWFPFLLFDTDWMGREIYGGEPNEGQNYATGVRMGALGLMLNSVVLG 346 (452)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 346 (452)
... ....+..++ +..+......................+.. .. . . ....+............++..
T Consensus 208 ~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~--~~~~~~~~~~~~~~~~~~~~~ 273 (417)
T d1pv7a_ 208 FSL----KLALELFRQ--PKLWFLSLYVIGVSCTYDVFDQQFANFFT-SF-F----A--TGEQGTRVFGYVTTMGELLNA 273 (417)
T ss_dssp CCH----HHHHHHTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TS-S----S--CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc----ccccccccc--ccccchhhhhHHHHHHHHhhhcccccccc-cc-c----c--ccccchhhhcccccccccccc
Confidence 011 112223333 22333232222222222222222222211 00 0 0 001111112223334566677
Q ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCchHHHHHHHHHHHhHHhHhHhhccchh
Q 012976 347 ITSVLMEKLCRKWGAGFIWGISNILMALCFLAMLILYYVAIHMDYRGHDLPPNGIVIAALIIFTILGGPLAITYSVPYAL 426 (452)
Q Consensus 347 i~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 426 (452)
++..+.+++.||.++|+.+..+..+.+++.+.+.+.+ +.+...+...+.|++.+...+...++
T Consensus 274 ~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 274 SIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-----------------SALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhcccccccchhhhHHHHHHhhhcccccc-----------------ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999888888777766653 56667777888899999999999999
Q ss_pred hhhhcccccCccc
Q 012976 427 VSIRTESLGLGQG 439 (452)
Q Consensus 427 ~~~~~~~~~~g~g 439 (452)
++|.+|++.|++.
T Consensus 337 ~~~~~~~~~~~~~ 349 (417)
T d1pv7a_ 337 ITSQFEVRFSATI 349 (417)
T ss_dssp HHHHSCGGGHHHH
T ss_pred HHHHCCHhHHHHH
Confidence 9999999987653
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=2e-12 Score=121.85 Aligned_cols=182 Identities=13% Similarity=0.004 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHH
Q 012976 30 LRKLLKVASVAGGIQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGA 108 (452)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~ 108 (452)
.+..+......+...........+.+.++ +..+.+..+.+.......+...++.++.|+++| |++||+.......
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~~~~~ 323 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD----KVFRGNRGATGVF 323 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTSTTCHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhh----hccccccccccch
Confidence 34455555555555566666777888887 567899999999999999999999999999999 8887764443222
Q ss_pred HHHHHHHHHHhcccccccccCCCCCCCchhHHHHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHHHHHHHH
Q 012976 109 ISIAVAVLLIGLSADIGWLLGDRGDFRPRAIAVFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAV 188 (452)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 188 (452)
............... .....+...+..++.+++.+...+....+..|.+|++.|+ ++.|+.+....+
T Consensus 324 ~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g--~~~g~~~~~~~~ 390 (447)
T d1pw4a_ 324 FMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAG--TAAGFTGLFGYL 390 (447)
T ss_dssp HHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHH--HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH--HHHHHHHHHHHH
Confidence 222222222222111 1122344455556667777777777889999999999999 899998887776
Q ss_pred -HHHHHHhhccccccceeccccccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 012976 189 -GNILGYATGSFSGWFKILPFTLTSACNVDCANLKSAFFLDVIFIAITTCISASAA 243 (452)
Q Consensus 189 -g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 243 (452)
|.++++.+.+.+... .||+..|++.+++.++..++..+..
T Consensus 391 ~g~~~~~~~~g~~~~~---------------~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 391 GGSVAASAIVGYTVDF---------------FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp HHHHHHHHHHHHHHHS---------------SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------------hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677776652221 2788888877666665555554443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.7e-12 Score=117.42 Aligned_cols=150 Identities=8% Similarity=-0.035 Sum_probs=114.1
Q ss_pred hCCCchhhHHHHhhhhhhhhhcccccccccccccCCCCCcchhHHHHHHHHHHHHHHHhcccccccccCCCCCCCchhHH
Q 012976 61 LGIPHAWASIIWLCGPVSGLFVQPLVGHFSDRCTSRFGRRRPFIVCGAISIAVAVLLIGLSADIGWLLGDRGDFRPRAIA 140 (452)
Q Consensus 61 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~~~r~Grr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (452)
.+.+....+.......++..++.++.+++.| |+|+|+.+.+. .+...++.....+.++. +
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----r~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------------~ 313 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIIN----RIGGKNALLLA-GTIMSVRIIGSSFATSA---------------L 313 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH----HHCHHHHHHHH-HHHHHHHHHHHHTCCCH---------------H
T ss_pred cccchhhhcccccccccccccchhhhhhhhc----ccccccchhhh-HHHHHHhhhcccccccc---------------c
Confidence 3345556777777888888999999999999 99999887774 44455555555555443 5
Q ss_pred HHHHHHHHHHHhhhhcchhHHHHhhhccCccccchhhhhhHH-HHHHHHHHHHHHhhccccccceecccccccccccccc
Q 012976 141 VFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYF-SLFMAVGNILGYATGSFSGWFKILPFTLTSACNVDCA 219 (452)
Q Consensus 141 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~~g~~ig~~~~~~~~~~~~~p~~~~~~~~~~~~ 219 (452)
...+...+.+++.+...+...+++.|.+|++.|+ ++.+.. +....+|..+++.++|++....
T Consensus 314 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~i~~~~~G~l~~~~--------------- 376 (417)
T d1pv7a_ 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSA--TIYLVCFCFFKQLAMIFMSVLAGNMYESI--------------- 376 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH--HHHHHHHTTTHHHHHHHHHHHHHHHHHHH---------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Confidence 5566677788888888899999999999999999 888864 5667789999998887733222
Q ss_pred chhHHHHHHHHHHHHHHHHHHhccccCC
Q 012976 220 NLKSAFFLDVIFIAITTCISASAAHEVP 247 (452)
Q Consensus 220 ~~~~~f~~~~~~~~~~~~~~~~~~~e~~ 247 (452)
|++..|++.+++.++..++..+.+++++
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 377 GFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 8889999988888877777777776544
|