Citrus Sinensis ID: 013052

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

MRKLYRNLMLMKNPLMNVRKTGHSHSGRMFSDRKWMVPFFASLLVSIMLLLSATFGLFTSSFSGDPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTARTEPPRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLTMKDFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRTNRFAPGAWCIGSSEGGADPCTLRGNDSMFRPGPGAERLQALLQTLLSEDFRKKQCS

cHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHHHHccccccccccEEEEEccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHcccccccEEEcccccccccccccccEEEccccccccccccEEEccccccccccEEEcccEEEEEcHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHcccccccccccccEEEEEcccccccccccccHHHHHHHHcccccEEcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccc

cHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccEEEEcccccEEcccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHHHccccEEEEccccEEEccccEEEEcccccccccEEEEccccEEEEEcHHHHEEEcccccHHHHHHHHHHHccccccccEEEEEEccccccccccccccEEEEcccccccccccccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHHccccccccccEccccccccccccccccccEcccccHHHHHHHHHHHHHHHHccccccc

MRKLYRNLMLMknplmnvrktghshsgrmfsdrkwmVPFFASLLVSIMLLLSATfglftssfsgdplpfdiisfaksddssgyfvesdinksfvtngtartepprlaylisgtkgdshRMMRTLQAvyhprnhyilhldleappreRLDLAlsvkndpiffEVENVRVMLQSNlvtykgptmIACTLQAIAILLKESLewdwfinlsasdyplvtqdDMLYVFSNMSKNLNFIEHTLISGWklnqrakpiivdpglylskksdiawttqrrslptsfqlftGSAWVMLTRRFVEYCIwgwdnlprTLLMYYTnfisspegyfhTVICNTEEFRNTAisndlhyiawdnppkqhpvkltMKDFDKMVKsnapfarkfakddpvldkIDKEllgrtnrfapgawcigsseggadpctlrgndsmfrpgpgAERLQALLQTLLSEDFRKKQCS

MRKLYRNLMLMKNPLMNVRKTGHSHSGRMFSDRKWMVPFFASLLVSIMLLLSATFGLFTSSFSGDPLPFDIISFAKSDDSSGYFVESDINKsfvtngtartepprLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLTMKDFDKMVKSNAPfarkfakddpvlDKIDKEllgrtnrfapgawcigsseggadpcTLRGNDSMFRPGPGAERLQALLQTllsedfrkkqcs

****************************MFSDRKWMVPFFASLLVSIMLLLSATFGLFTSSFSGDPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTAR***PRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNP******KLTM**F*********FARKFAKDDPVLDKIDKELLGRTNRFAPGAWCIGS********************************************

****YRNLMLMKNPLM****************RKWMVPFFASLLVSIMLLLSATFGLFT**************FAKSDDSSGYFVES*****************RLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLTMKDFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRTNRFAPGAWCIGSSEGGADPCTLRGNDSMFRPGPGAERLQALLQTLLSEDFR*****

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		450	2.2.26 [Sep-21-2011]
Q9EPI1		821	Xylosyltransferase 1 (Fra	yes	no	0.631	0.345	0.272	6e-21
Q5QQ57		945	Xylosyltransferase 1 OS=P	yes	no	0.624	0.297	0.275	6e-21
Q86Y38		959	Xylosyltransferase 1 OS=H	yes	no	0.624	0.293	0.275	7e-21
Q811B1		953	Xylosyltransferase 1 OS=M	yes	no	0.624	0.294	0.266	3e-20
Q5QQ56		950	Xylosyltransferase 1 OS=C	yes	no	0.624	0.295	0.269	4e-20
Q5QQ51		865	Xylosyltransferase 2 OS=P	no	no	0.62	0.322	0.279	5e-19
Q5QQ50		865	Xylosyltransferase 2 OS=C	no	no	0.608	0.316	0.277	5e-19
Q9EPL0		865	Xylosyltransferase 2 OS=M	no	no	0.604	0.314	0.282	6e-19
Q9H1B5		865	Xylosyltransferase 2 OS=H	no	no	0.62	0.322	0.279	6e-19
Q5QQ49		867	Xylosyltransferase 2 OS=B	no	no	0.626	0.325	0.264	2e-18

>sp\|Q9EPI1\|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1	Back alignment and function desciption

 Score =  102 bits (254), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 149/316 (47%), Gaps = 32/316 (10%)

Query: 103 PPRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFE 162
           P R+A+++      S ++ R  +A+YH  + Y +H+D  +    R  L  S + D     
Sbjct: 190 PVRIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQFSRQYD----- 244

Query: 163 VENVRVMLQSNLVTYKGPTMIACTLQAIAILLKES-LEWDWFINLSASDYPLVTQDDMLY 221
             NVRV        + G ++++  LQ++  LL+ +   WD+FINLSA+DYP+ T +D L 
Sbjct: 245 --NVRVTSWRMATIWGGASLLSTYLQSMRDLLEMTDWPWDFFINLSAADYPIRT-NDQLV 301

Query: 222 VFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFT 281
            F +  +++NF++    S  + N R         L+L   + + W    R +P    +  
Sbjct: 302 AFLSRYRDMNFLK----SHGRDNARFIRKQDLDRLFLECDTHM-WRLGDRRIPEGIAVDG 356

Query: 282 GSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDL 341
           GS W +L R+FVEY  +  D+L   +  +Y+  +   E +FHTV+ N+    +T + N+L
Sbjct: 357 GSDWFLLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNL 415

Query: 342 HYIAWDNP-----PKQH--------PVKLTMKDFDKMVKSNAP--FARKFAK--DDPVLD 384
               W+         +H        P     +DF +  ++  P  FARKF    +  ++ 
Sbjct: 416 RITNWNRKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAIVNQEIIG 475

Query: 385 KIDKELLGRTNRFAPG 400
           ++D  L G      PG
Sbjct: 476 QLDSYLYGNYPAGTPG 491

Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6

>sp\|Q5QQ57\|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q86Y38\|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1	Back alignment and function description

>sp\|Q811B1\|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ56\|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ51\|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q5QQ50\|XYLT2_CANFA Xylosyltransferase 2 OS=Canis familiaris GN=XYLT2 PE=2 SV=1	Back alignment and function description

>sp\|Q9EPL0\|XYLT2_MOUSE Xylosyltransferase 2 OS=Mus musculus GN=Xylt2 PE=2 SV=3	Back alignment and function description

>sp\|Q9H1B5\|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2	Back alignment and function description

>sp\|Q5QQ49\|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		450
334191636		450	N-acetylglucosaminyltransferase [Gossypi	1.0	1.0	0.82	0.0
385139883		433	glycosyltransferase family 14 protein [B	0.962	1.0	0.817	0.0
255553873		439	acetylglucosaminyltransferase, putative	0.975	1.0	0.811	0.0
359485554		433	PREDICTED: xylosyltransferase 1-like [Vi	0.962	1.0	0.799	0.0
224124616		433	predicted protein [Populus trichocarpa]	0.962	1.0	0.799	0.0
363807770		432	uncharacterized protein LOC100795146 [Gl	0.957	0.997	0.782	0.0
356517552		432	PREDICTED: xylosyltransferase 1-like [Gl	0.957	0.997	0.777	0.0
118485429		442	unknown [Populus trichocarpa]	0.982	1.0	0.762	0.0
358345115		433	Beta-1,3-galactosyl-O-glycosyl-glycoprot	0.957	0.995	0.771	0.0
224127112		433	predicted protein [Populus trichocarpa]	0.962	1.0	0.773	0.0

>gi\|334191636\|gb\|AEG66933.1\| N-acetylglucosaminyltransferase [Gossypium hirsutum]	Back alignment and taxonomy information

 Score =  783 bits (2021), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/450 (82%), Positives = 406/450 (90%)

Query: 1   MRKLYRNLMLMKNPLMNVRKTGHSHSGRMFSDRKWMVPFFASLLVSIMLLLSATFGLFTS 60
           MRKLYR L L++NPL +VRK  +S SGR+ SDRKW++PFFASLLVSI L LSA FGLF +
Sbjct: 1   MRKLYRKLELIRNPLTSVRKNVNSQSGRVLSDRKWIIPFFASLLVSITLFLSAIFGLFNT 60

Query: 61  SFSGDPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTARTEPPRLAYLISGTKGDSHRM 120
              GD LPFDIISFA+++DSSGYFVESD+ KSF T+G A  E PRLAYLISGTKGDS RM
Sbjct: 61  PNGGDQLPFDIISFARTEDSSGYFVESDLKKSFNTSGYASMEAPRLAYLISGTKGDSRRM 120

Query: 121 MRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGP 180
           MRTLQAVYHPRN Y+LHLDLEAPPRERL+L   VK DP F EVENVRVM QSNLVTYKGP
Sbjct: 121 MRTLQAVYHPRNQYVLHLDLEAPPRERLELTNMVKIDPTFREVENVRVMAQSNLVTYKGP 180

Query: 181 TMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISG 240
           TMIACTLQAIAILLKESL+WDWF+NLSASDYPLVTQDD+L+VFSN+S+NLNFIEHT I+G
Sbjct: 181 TMIACTLQAIAILLKESLDWDWFLNLSASDYPLVTQDDLLHVFSNLSRNLNFIEHTQIAG 240

Query: 241 WKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGW 300
           WKLN RAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSF+L+TGSAWV LTR FVEYCIWGW
Sbjct: 241 WKLNSRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFKLYTGSAWVALTRTFVEYCIWGW 300

Query: 301 DNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLTMK 360
           DNLPRT+LMYYTNF+SSPEGYFHTVICNT+EFR+T IS+DLHYIAWD PPKQHPV L+MK
Sbjct: 301 DNLPRTILMYYTNFVSSPEGYFHTVICNTDEFRSTVISHDLHYIAWDTPPKQHPVSLSMK 360

Query: 361 DFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRTNRFAPGAWCIGSSEGGADPCTLRGND 420
           DFDKMVKSNAPFARKF K+DPVLDKIDKELLGRT RFA GAWCIG SEGGADPC++RGND
Sbjct: 361 DFDKMVKSNAPFARKFHKNDPVLDKIDKELLGRTGRFAAGAWCIGGSEGGADPCSVRGND 420

Query: 421 SMFRPGPGAERLQALLQTLLSEDFRKKQCS 450
           S+F PGPGA+RLQ LL+TL+SED RKKQCS
Sbjct: 421 SVFAPGPGAKRLQELLKTLMSEDSRKKQCS 450

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|385139883\|gb\|AFI41914.1\| glycosyltransferase family 14 protein [Betula platyphylla]	Back alignment and taxonomy information

>gi\|255553873\|ref\|XP_002517977.1\| acetylglucosaminyltransferase, putative [Ricinus communis] gi\|223542959\|gb\|EEF44495.1\| acetylglucosaminyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359485554\|ref\|XP_003633289.1\| PREDICTED: xylosyltransferase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224124616\|ref\|XP_002319376.1\| predicted protein [Populus trichocarpa] gi\|222857752\|gb\|EEE95299.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|363807770\|ref\|NP_001241920.1\| uncharacterized protein LOC100795146 [Glycine max] gi\|255639885\|gb\|ACU20235.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|356517552\|ref\|XP_003527451.1\| PREDICTED: xylosyltransferase 1-like [Glycine max]	Back alignment and taxonomy information

>gi\|118485429\|gb\|ABK94571.1\| unknown [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|358345115\|ref\|XP_003636628.1\| Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase [Medicago truncatula] gi\|355502563\|gb\|AES83766.1\| Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224127112\|ref\|XP_002329401.1\| predicted protein [Populus trichocarpa] gi\|222870451\|gb\|EEF07582.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		450
TAIR\|locus:2020748		447	AT1G03520 [Arabidopsis thalian	0.988	0.995	0.719	6.8e-182
TAIR\|locus:2125502		448	AT4G03340 [Arabidopsis thalian	0.991	0.995	0.723	4.3e-180
TAIR\|locus:2178047		447	AT5G39990 [Arabidopsis thalian	0.933	0.939	0.583	3.3e-134
TAIR\|locus:2147880		434	AT5G15050 [Arabidopsis thalian	0.913	0.947	0.575	1.3e-132
TAIR\|locus:2124009		421	AT4G27480 [Arabidopsis thalian	0.911	0.973	0.535	1.5e-124
TAIR\|locus:2087125		424	AT3G15350 [Arabidopsis thalian	0.895	0.950	0.549	1.1e-119
TAIR\|locus:2096399		378	UNE7 "unfertilized embryo sac	0.748	0.891	0.557	1.3e-111
TAIR\|locus:2037065		423	AT1G53100 [Arabidopsis thalian	0.886	0.943	0.510	2.3e-110
TAIR\|locus:505006303		384	AT2G37585 [Arabidopsis thalian	0.684	0.802	0.579	3.2e-97
TAIR\|locus:2026356		395	AT1G71070 [Arabidopsis thalian	0.771	0.878	0.487	1.3e-91

TAIR\|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
 Identities = 325/452 (71%), Positives = 381/452 (84%)

Query:     1 MRKLYRNLMLMKNPLMNVRKTGHSHSG-RMFSDRKWMVPFFASLLVSIMLLLSATFGLFT 59
             MRKLYR L+  ++P   V++   SHSG R FSDRKW+ PF ASL++SI LL+    G F 
Sbjct:     1 MRKLYRKLVSFRDPFARVKRHVSSHSGFRAFSDRKWLFPFLASLIMSITLLILLISGQFD 60

Query:    60 SSFSG-DPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTARTEPPRLAYLISGTKGDSH 118
             + F   D LP D++S     +S+ YFVESD  +S  +      EPPRLAYLISGTKGDSH
Sbjct:    61 NFFGEEDQLPVDVVS-----ESNDYFVESDFKQSMNSTADVNPEPPRLAYLISGTKGDSH 115

Query:   119 RMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYK 178
             RMMRTLQAVYHPRN Y+LHLDLEAPPRER++LA+SVK DP F E+ENVRVM QSNLVTYK
Sbjct:   116 RMMRTLQAVYHPRNQYVLHLDLEAPPRERMELAMSVKTDPTFREMENVRVMAQSNLVTYK 175

Query:   179 GPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLI 238
             GPTMIACTLQA++ILL+ESL WDWF+NLSASDYPLVTQDD+LYVFSN+S+N+NFIE+  +
Sbjct:   176 GPTMIACTLQAVSILLRESLHWDWFLNLSASDYPLVTQDDLLYVFSNLSRNVNFIENMQL 235

Query:   239 SGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIW 298
             +GWKLNQRAK IIVDP LYLSKKSDIAWTTQRRSLP SF+LFTGSAW+MLTR F+EYCIW
Sbjct:   236 TGWKLNQRAKSIIVDPALYLSKKSDIAWTTQRRSLPNSFRLFTGSAWIMLTRSFLEYCIW 295

Query:   299 GWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLT 358
             GWDN PRT+LMYYTNF+SSPEGYFHTVICN++EF NTAI +DLHYIAWD+PPKQHP  L+
Sbjct:   296 GWDNFPRTILMYYTNFVSSPEGYFHTVICNSKEFINTAIGHDLHYIAWDSPPKQHPRSLS 355

Query:   359 MKDFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRTNRFAPGAWCIGSSEGGADPCTLRG 418
             +KDFD MVKS APFARKF K+DP LDKIDKELLGRT+RFAPG WC+GSS  G D C+++G
Sbjct:   356 LKDFDNMVKSKAPFARKFHKNDPALDKIDKELLGRTHRFAPGGWCVGSSANGNDQCSVQG 415

Query:   419 NDSMFRPGPGAERLQALLQTLLSEDFRKKQCS 450
             +DS+ +PGPG+ERLQ L+QTL SE+FR+KQCS
Sbjct:   416 DDSVLKPGPGSERLQELVQTLSSEEFRRKQCS 447

GO:0005634 "nucleus" evidence=ISM

GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016051 "carbohydrate biosynthetic process" evidence=ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR\|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2026356 AT1G71070 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.2	LOW CONFIDENCE prediction!
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.2.26	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XIII000483	hypothetical protein (433 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		450
PLN03183		421	PLN03183, PLN03183, acetylglucosaminyltransferase	0.0
pfam02485		242	pfam02485, Branch, Core-2/I-Branching enzyme	2e-80

>gnl\|CDD\|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

 Score =  545 bits (1407), Expect = 0.0
 Identities = 240/428 (56%), Positives = 311/428 (72%), Gaps = 14/428 (3%)

Query: 27  GRMFSDRKWMVPFFASLLVSIMLL-LSATFGLFTSSFSGDPLPFDIISFAKSDDSSGYFV 85
           G +  +++W+ P   + LV + LL  S   GL +S  + + + F I   ++++ +   F 
Sbjct: 2   GSVNVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSI-FSIFPLSRTNQTRLEFA 60

Query: 86  ESDINKSFVTNGTARTEP--PRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAP 143
           ES +N+S         +   PR AYL+SG+KGD  ++ RTL+A+YHPRN Y++HLDLE+P
Sbjct: 61  ESKVNQS---PHPPPVQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESP 117

Query: 144 PRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWF 203
             ERL+LA  V+NDP+F +V NV ++ ++NLVTY+GPTM+A TL A AILLK S +WDWF
Sbjct: 118 AEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWF 177

Query: 204 INLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSD 263
           INLSASDYPLVTQDD+++ FS + +NLNFIEHT   GWK  +RA P+I+DPGLY + KSD
Sbjct: 178 INLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSD 237

Query: 264 IAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFH 323
           I W T RRSLPT+F+LFTGSAW++L+R FVEYCIWGWDNLPRTLLMYYTNF+SSPEGYFH
Sbjct: 238 IYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFH 297

Query: 324 TVICNTEEFRNTAISNDLHYIAWDNPPKQHPVKLTMKDFDKMVKSNAPFARKFAKDDPVL 383
           TVICN  EF  TA+++DLHYI+WDNPPKQHP  L++ D +KM+ S A FARKF +DDPVL
Sbjct: 298 TVICNVPEFAKTAVNHDLHYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVL 357

Query: 384 DKIDKELLGRTN-RFAPGAWCIGSSEGGADPCTLRGNDSMFRPGPGAERLQALLQTL-LS 441
           DKIDKELLGR N  F PG WC      G   C+  G+ +  +PGPGA+RL+ L+  L L 
Sbjct: 358 DKIDKELLGRKNGSFTPGGWC-----SGKPKCSRVGDPAKIKPGPGAQRLKGLVSRLVLE 412

Query: 442 EDFRKKQC 449
               + QC
Sbjct: 413 AKLGQNQC 420

Length = 421

>gnl\|CDD\|217062 pfam02485, Branch, Core-2/I-Branching enzyme	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		450
PLN03183		421	acetylglucosaminyltransferase family protein; Prov	100.0
KOG0799		439	consensus Branching enzyme [Carbohydrate transport	100.0
PF02485		244	Branch: Core-2/I-Branching enzyme; InterPro: IPR00	100.0
TIGR03469		384	HonB hopene-associated glycosyltransferase HpnB. T	90.67
TIGR03472		373	HpnI hopanoid biosynthesis associated glycosyl tra	86.58
cd02525		249	Succinoglycan_BP_ExoA ExoA is involved in the bios	83.76
PRK11204		420	N-glycosyltransferase; Provisional	82.29
cd06439		251	CESA_like_1 CESA_like_1 is a member of the cellulo	80.62

>PLN03183 acetylglucosaminyltransferase family protein; Provisional	Back alignment and domain information

Probab=100.00  E-value=1.6e-115  Score=902.70  Aligned_cols=417  Identities=56%  Similarity=1.029  Sum_probs=377.5

Q ss_pred             CCCccCCccchHHHHHHHHHHHHHHHHHhh-cCcCCCCCC-CCCCccccccccCCCCCCcccccccccccccCCCCCCCC
Q 013052           26 SGRMFSDRKWMVPFFASLLVSIMLLLSATF-GLFTSSFSG-DPLPFDIISFAKSDDSSGYFVESDINKSFVTNGTARTEP  103 (450)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  103 (450)
                      ||..++++||++|++++++++++|+++++. +..++++.. ..+.+.+.  ...+++.+.|+|+++.+.+.. .+..+.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~   77 (421)
T PLN03183          1 MGSVNVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPL--SRTNQTRLEFAESKVNQSPHP-PPVQDKL   77 (421)
T ss_pred             CCccchhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccc--cccccccccccccccCCCCCC-CCCCCCC
Confidence            567789999999999999999888665542 222222211 11211111  123455667999998865421 1234568


Q ss_pred             CcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCccHH
Q 013052          104 PRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPTMI  183 (450)
Q Consensus       104 ~kiAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~S~V  183 (450)
                      |||||||++|+||.+|++|||++||||+|+||||+|+||+..++.+++..++.++++.+++||+|+++++.|+|||+|||
T Consensus        78 ~r~AYLI~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V  157 (421)
T PLN03183         78 PRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMV  157 (421)
T ss_pred             CeEEEEEEecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHH
Confidence            99999999998899999999999999999999999999999999999999998899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccccCCceeeeeccceeeCCCcccccCcc
Q 013052          184 ACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSD  263 (450)
Q Consensus       184 ~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~~~gwk~~~R~~~ii~dpgly~~~k~~  263 (450)
                      +|||+||+.|++...+|||||||||+||||+|||||++.|+++|+|+|||+++++.+|++.+|++++++|||+|..++..
T Consensus       158 ~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~  237 (421)
T PLN03183        158 ANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSD  237 (421)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccch
Confidence            99999999999988999999999999999999999888888889999999999889999999999999999999988888


Q ss_pred             chhccccCCCCCcceeeecceeEEecHHHHHHhHhccCCchHHHHhhhccCCCCCCcchhhhcccccccccccccCCeeE
Q 013052          264 IAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAISNDLHY  343 (450)
Q Consensus       264 ~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~nt~~pDE~yFqTvl~Ns~~f~~t~vn~nLRy  343 (450)
                      ++|.+++|..|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+||||
T Consensus       238 ~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRy  317 (421)
T PLN03183        238 IYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHY  317 (421)
T ss_pred             hhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EecCCCCCCCCcccCHHHHHHHhcCCCcEEeccCCChhHHHHHHHHHhcCC-CCCCCCccccCCCCCCCCCCcccCCCCC
Q 013052          344 IAWDNPPKQHPVKLTMKDFDKMVKSNAPFARKFAKDDPVLDKIDKELLGRT-NRFAPGAWCIGSSEGGADPCTLRGNDSM  422 (450)
Q Consensus       344 I~W~~~~~~~P~~l~~~D~~~l~~S~a~FARKF~~dd~vLd~Id~~ll~r~-~~~~~g~w~~~~~~~~~~~c~~~g~~~~  422 (450)
                      |+|++++++||++|+.+|+++|++|+++|||||+.|++|+|+||+++++|. ++++|||||.|     +||||+|||+++
T Consensus       318 I~W~~~~~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~~~  392 (421)
T PLN03183        318 ISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDPAK  392 (421)
T ss_pred             EecCCCCCCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCcCc
Confidence            999999889999999999999999999999999999999999999999999 99999999987     489999999999


Q ss_pred             ccCCchHHHHHHHHHHHhh-hhhccCCCC
Q 013052          423 FRPGPGAERLQALLQTLLS-EDFRKKQCS  450 (450)
Q Consensus       423 ~~pg~~~~~l~~~~~~~~~-~~~~~~~c~  450 (450)
                      +||||||+||++||++||+ ++||++||+
T Consensus       393 ~~p~~~~~~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        393 IKPGPGAQRLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             cCCCcHHHHHHHHHHHHhchhccccccCC
Confidence            9999999999999999999 999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases	Back alignment and domain information

>TIGR03469 HonB hopene-associated glycosyltransferase HpnB	Back alignment and domain information

>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI	Back alignment and domain information

>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan	Back alignment and domain information

>PRK11204 N-glycosyltransferase; Provisional	Back alignment and domain information

>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		450
3otk_A		391	Structure And Mechanisim Of Core 2 Beta1,6-N- Acety		3e-07
2gak_A		391	X-ray Crystal Structure Of Murine Leukocyte-type Co		7e-07

>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391

Back alignment and structure

Iteration: 1

Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 16/205 (7%) Query: 122 RTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGPT 181 R L+A+Y P+N Y +H+D +A E LA +V+ F+ NV V Q V Y T Sbjct: 101 RLLRAIYMPQNFYCIHVDRKA---EESFLA-AVQGIASCFD--NVFVASQLESVVYASWT 154 Query: 182 MIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGW 241 + L + L + + W + INLS D+P+ T +++ + N + Sbjct: 155 RVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNK 214 Query: 242 KLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWD 301 + + + +VD L + I + P LF+GSA+ ++TR +V Y + + Sbjct: 215 EERWKKRYAVVDGKL---TNTGIV----KAPPPLKTPLFSGSAYFVVTREYVGYVL---E 264 Query: 302 NLPRTLLMYYTNFISSPEGYFHTVI 326 N LM + SP+ + I Sbjct: 265 NENIQKLMEWAQDTYSPDEFLWATI 289

PyMOL of 3otk

>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		450
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	4e-66
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391	Back alignment and structure

 Score =  216 bits (550), Expect = 4e-66
 Identities = 68/323 (21%), Positives = 114/323 (35%), Gaps = 44/323 (13%)

Query: 98  TARTEPPRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKND 157
           T       +AY I         + R L+A+Y P+N Y +H+D +A       +       
Sbjct: 78  TKEEVGFPIAYSIV-VHHKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAV------Q 130

Query: 158 PIFFEVENVRVMLQSNLVTYKGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQD 217
            I    +NV V  Q   V Y   T +   L  +  L + +  W + INL   D+P+ T  
Sbjct: 131 GIASCFDNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNL 190

Query: 218 DMLYVFSNMSKNLNFIEHTLISGWKLNQRAKPIIVDPGLYLSKKSDIAWTTQRRSLPTSF 277
           +++      +   N     +    +   + +  +VD  L  +          +   P   
Sbjct: 191 EIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGIV-------KAPPPLKT 243

Query: 278 QLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNTEEFRNTAI 337
            LF+GSA+ ++TR +V Y +   +N     LM +     SP+ +    I    E   +  
Sbjct: 244 PLFSGSAYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFP 300

Query: 338 SN----------DLHYIAWD-----------NPPKQHPVK-----LTMKDFDKMVKSNAP 371
           S+             ++ W             PP               D   M++ +  
Sbjct: 301 SSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHL 360

Query: 372 FARKFAKD-DPVLDKIDKELLGR 393
           FA KF  D DP   +   E L R
Sbjct: 361 FANKFDMDVDPFAIQCLDEHLRR 383

PyMOL of 2gak

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		450
2gak_A		391	Beta-1,6-N-acetylglucosaminyltransferase; glycopro	100.0

>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*	Back alignment and structure

Probab=100.00  E-value=2.2e-62  Score=506.12  Aligned_cols=276  Identities=22%  Similarity=0.299  Sum_probs=237.6

Q ss_pred             CCCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceeeecCc
Q 013052          101 TEPPRLAYLISGTKGDSHRMMRTLQAVYHPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVTYKGP  180 (450)
Q Consensus       101 ~~p~kiAYLI~~hk~d~~~l~RLL~aLyhP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~Wgg~  180 (450)
                      +.+|+|||+|++|+ |+++++||++++|||+|.||||+|+|++..++..+...      ..+++||+|++++..|.|||+
T Consensus        81 e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WGg~  153 (391)
T 2gak_A           81 EVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYASW  153 (391)
T ss_dssp             HHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTTSH
T ss_pred             ccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccCCc
Confidence            34699999999998 99999999999999999999999999998877666533      357899999999999999999


Q ss_pred             cHHHHHHHHHHHHHhcCCCCceEEeccCCcccccchhHHHHHhcccCCCCceeeccccCCceeeeecc--ceeeCCCccc
Q 013052          181 TMIACTLQAIAILLKESLEWDWFINLSASDYPLVTQDDMLYVFSNMSKNLNFIEHTLISGWKLNQRAK--PIIVDPGLYL  258 (450)
Q Consensus       181 S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt~ddi~~~ls~~~r~~NFIe~~~~~gwk~~~R~~--~ii~dpgly~  258 (450)
                      |||+|+++||+.||+...+|||||||||+||||+|+++|.++|+.+ +|+|||++.++.+|++. |++  +.+.+++++ 
T Consensus       154 S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~-  230 (391)
T 2gak_A          154 TRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT-  230 (391)
T ss_dssp             HHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE-
T ss_pred             hHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee-
Confidence            9999999999999998779999999999999999999999999875 68999999988888653 332  223344322 


Q ss_pred             ccCccchhccccCCCCCcceeeecceeEEecHHHHHHhHhccCCchHHHHhhhccCCCCCCcchhhhcccc---------
Q 013052          259 SKKSDIAWTTQRRSLPTSFQLFTGSAWVMLTRRFVEYCIWGWDNLPRTLLMYYTNFISSPEGYFHTVICNT---------  329 (450)
Q Consensus       259 ~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dnlpr~ll~yf~nt~~pDE~yFqTvl~Ns---------  329 (450)
                            ++..++|.+|.++++|+|||||+|||+||+||++  |++++.+++||+++++|||+||||++.|+         
T Consensus       231 ------~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~  302 (391)
T 2gak_A          231 ------NTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSS  302 (391)
T ss_dssp             ------EEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSS
T ss_pred             ------eecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccccc
Confidence                  2345678889899999999999999999999997  66788899999999999999999998664         


Q ss_pred             cccccccccCCeeEEecCCCCC------CCCc----------ccCHHHHHHHhcCCCcEEeccCC--ChhHHHHHHHHHh
Q 013052          330 EEFRNTAISNDLHYIAWDNPPK------QHPV----------KLTMKDFDKMVKSNAPFARKFAK--DDPVLDKIDKELL  391 (450)
Q Consensus       330 ~~f~~t~vn~nLRyI~W~~~~~------~~P~----------~l~~~D~~~l~~S~a~FARKF~~--dd~vLd~Id~~ll  391 (450)
                      ..|+++++|+++|||+|++..+      .||.          +|+.+|+++|.+|+++|||||++  |++|++|||+.|.
T Consensus       303 ~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l~  382 (391)
T 2gak_A          303 NKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLR  382 (391)
T ss_dssp             GGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHHH
T ss_pred             cccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHHh
Confidence            3456677899999999985322      2443          89999999999999999999997  6899999999998


Q ss_pred             cCC
Q 013052          392 GRT  394 (450)
Q Consensus       392 ~r~  394 (450)
                      +|.
T Consensus       383 ~r~  385 (391)
T 2gak_A          383 RKA  385 (391)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            876

PyMOL of 2gak

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		450
d1qg8a_		255	Spore coat polysaccharide biosynthesis protein Sps	85.06

>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Spore coat polysaccharide biosynthesis protein SpsA
domain: Spore coat polysaccharide biosynthesis protein SpsA
species: Bacillus subtilis [TaxId: 1423]

Probab=85.06  E-value=2  Score=37.09  Aligned_cols=115  Identities=9%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CcEEEEEEecCCCHHHHHHHHHHHc---CCCCeEEEEEcCCCChhHHHHHHhhhcCCCcccccCCeEEecccceee---e
Q 013052          104 PRLAYLISGTKGDSHRMMRTLQAVY---HPRNHYILHLDLEAPPRERLDLALSVKNDPIFFEVENVRVMLQSNLVT---Y  177 (450)
Q Consensus       104 ~kiAYLI~~hk~d~~~l~RLL~aLy---hP~n~y~IHlD~ks~~~~~~~L~~~v~~~~~~~~~~NV~vv~kr~~V~---W  177 (450)
                      |++..+|.+++ ..+.+++.|+.+-   .++..++|+-| .|++...+.|+++.       .-.+|+++.......   -
T Consensus         1 P~vSiiip~yN-~~~~l~~~l~Si~~Qt~~~~eiivvdd-~S~d~t~~~l~~~~-------~~~~i~~~~~~~~~~~~~~   71 (255)
T d1qg8a_           1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDD-NSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERT   71 (255)
T ss_dssp             CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEEC-SCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHH
T ss_pred             CEEEEEEecCC-CHHHHHHHHHHHHhCCCCCeEEEEEEC-CCCccHHHHHHHhh-------hhccccccccccccccccc
Confidence            68899999997 4678999998874   24456655555 55666666565432       235677765432211   0


Q ss_pred             cCccHHHHHHHHHHHHHhcCCCCceEEeccCCcccccc-hhHHHHHhcccCCCCcee
Q 013052          178 KGPTMIACTLQAIAILLKESLEWDWFINLSASDYPLVT-QDDMLYVFSNMSKNLNFI  233 (450)
Q Consensus       178 gg~S~V~AtL~~~a~LL~~~~~wdyfinLSgsDyPLkt-~ddi~~~ls~~~r~~NFI  233 (450)
                      ...+.-.|    +..+++.. +-||++.|.+.|++... .+.+..++... .+..++
T Consensus        72 ~~~g~~~a----~N~gi~~a-~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~-~~~~~v  122 (255)
T d1qg8a_          72 EKTRYAAL----INQAIEMA-EGEYITYATDDNIYMPDRLLKMVRELDTH-PEKAVI  122 (255)
T ss_dssp             SSCHHHHH----HHHHHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHHC-TTCCEE
T ss_pred             ccchhccc----cccccccc-ccccccccccccccccchHHHHHHHHHhC-CCCCeE
Confidence            12222222    22333332 35899999999999754 44555666543 345555

PyMOL of d1qg8a_