Citrus Sinensis ID: 013053

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
ccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEcccccEEEEEEEEEEEcccccEEEEEEEEcccccccEEEEEEEcccccccccccccccccEEcccccccccEEEEEEEcccccccccEEEEEEEEEEccccccccccccccccEEEEEEEcEEEEcccEEEEEEEEEEcccccccccccccccEEEccEEEEcccccccccccccEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccHHHHcccccccccccEEEEEcccccccccEEEEccccEEEEEEEEEcccEEEEEEEccccccccccEEEEEEEccccccEEEEEccEEEEEEEEccccccEEEEEEEEEEEccccccccEEcccccEEEEcccEEEEcccccccEEEEEEcccccccccEEEEEEEEccccHHHccccEEEEEEEEc
cHHHHHHHHHHHHHHHHHHHHHccccHHHEEccEEEEEEccccEEEEEEEEEEEEcccccccEEEEEccHHHHccEEEEEEEEcccccccccEccEEEEEEEccccccccEEEEEEEcccccccccEEEEEEEEEEEcccccccHHccccccEEEEEEcccccccccccEEEEEEEEEcccccccccccccccccccEEEEcccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccccEHHHHHccccccccHHEEEEEEcccccccEEEEEEEccEEccccccccccEEEEEEcccccccccccEEEEEEcccHHHHHHcccccEEEEEEcccccccEEEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEccccEEEEEEEccccHHccccEEEEEEccccHHccccccHEEEEEEcc
MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLkvenegsepvsevllafpdlqVKDLALlkasphegkgkvkslsaslpvenvkpngmpaALTFYAVKLpkalgkgdsytFDVLAVFAHalrpfpekitqADIQLVVFQesafyltpyVVKVQSLsvklpesriESYTKLEntkihgseikygpyenlpsfsyspivvhfesnqpfavGQEVVREIEIShwgnvqvtEHYKLvhggaqnkgefsrldyqarptirGASAFKYLIakmpprvhsvyyrdeignistsnlwgdskktelliepryplfggwrtaftigyglplkDFLFelegnrflnitfgspmnelvIDNLIVKVVlpegsgdisvsapfpvnqweetklshldltgrpvvvlqktnvvpehnQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
MGVRRKMALRFDLIIFTILLFASPVLSDLILSkvdrridltsqivritstlkvenegsepVSEVLLAFPDLQVKDLALLKasphegkgkvkslsaslPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIEsytklentkihgseikYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGnistsnlwgdskKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
******MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVEN****PVSEVLLAFPDLQVKDLALL***************************MPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNK********
*****KMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEG************V*NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIE**************IKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASP**********SASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVRRKMALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQDCSGMKFKQQFNKLKMLSIDA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
Q9SFX3 614 Dolichyl-diphosphooligosa yes no 0.904 0.662 0.651 1e-159
Q0DJC5 615 Dolichyl-diphosphooligosa yes no 0.891 0.652 0.635 1e-158
Q9ZUA0464 Dolichyl-diphosphooligosa no no 0.937 0.909 0.513 1e-120
B9FDT1473 Dolichyl-diphosphooligosa no no 0.875 0.832 0.531 1e-117
Q4R4T0 607 Dolichyl-diphosphooligosa N/A no 0.857 0.635 0.385 1e-70
Q91YQ5 608 Dolichyl-diphosphooligosa yes no 0.857 0.634 0.385 1e-70
P04843 607 Dolichyl-diphosphooligosa yes no 0.857 0.635 0.385 2e-70
Q5RFB6 607 Dolichyl-diphosphooligosa yes no 0.857 0.635 0.382 3e-70
Q9GMB0 608 Dolichyl-diphosphooligosa yes no 0.873 0.646 0.383 5e-70
P07153 605 Dolichyl-diphosphooligosa yes no 0.857 0.638 0.375 1e-68
>sp|Q9SFX3|OST1A_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1 Back     alignment and function desciption
 Score =  561 bits (1447), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 265/407 (65%), Positives = 323/407 (79%)

Query: 23  SPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKAS 82
           +P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP     +LA L  +
Sbjct: 21  TPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFLGNNLAYLSVA 80

Query: 83  PHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRP 142
           P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V+A F + L+P
Sbjct: 81  PSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEVVAAFTNVLQP 140

Query: 143 FPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIHGSEIKYG 202
           FPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENTK+ GSE+KYG
Sbjct: 141 FPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENTKLQGSELKYG 200

Query: 203 PYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEF 262
           PY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +VH GAQ KGEF
Sbjct: 201 PYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVVHRGAQLKGEF 260

Query: 263 SRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRY 322
           SRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSKKTELLIEPR+
Sbjct: 261 SRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSKKTELLIEPRF 320

Query: 323 PLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVKVVLPEGSGDI 382
           PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+VVLPEGS DI
Sbjct: 321 PLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQVVLPEGSKDI 380

Query: 383 SVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQ 429
           SV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HNQ  Q+ ++
Sbjct: 381 SVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVYYK 427
Essential subunit of the N-oligosaccharyl transferase (OST) complex which catalyzes the transfer of a high mannose oligosaccharide from a lipid-linked oligosaccharide donor to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|Q0DJC5|OST1A_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Oryza sativa subsp. japonica GN=OST1A PE=2 SV=1 Back     alignment and function description
>sp|Q9ZUA0|OST1B_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Arabidopsis thaliana GN=OST1B PE=2 SV=1 Back     alignment and function description
>sp|B9FDT1|OST1B_ORYSJ Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B OS=Oryza sativa subsp. japonica GN=OST1B PE=2 SV=1 Back     alignment and function description
>sp|Q4R4T0|RPN1_MACFA Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Macaca fascicularis GN=RPN1 PE=2 SV=1 Back     alignment and function description
>sp|Q91YQ5|RPN1_MOUSE Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Mus musculus GN=Rpn1 PE=2 SV=1 Back     alignment and function description
>sp|P04843|RPN1_HUMAN Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Homo sapiens GN=RPN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RFB6|RPN1_PONAB Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Pongo abelii GN=RPN1 PE=2 SV=1 Back     alignment and function description
>sp|Q9GMB0|RPN1_PIG Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Sus scrofa GN=RPN1 PE=1 SV=1 Back     alignment and function description
>sp|P07153|RPN1_RAT Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Rattus norvegicus GN=Rpn1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
225457618 610 PREDICTED: dolichyl-diphosphooligosaccha 0.94 0.693 0.765 0.0
147815138 682 hypothetical protein VITISV_024651 [Viti 0.953 0.629 0.739 0.0
224086092 615 predicted protein [Populus trichocarpa] 0.915 0.669 0.736 0.0
255539294 612 ribophorin, putative [Ricinus communis] 0.951 0.699 0.714 0.0
224061851 615 predicted protein [Populus trichocarpa] 0.955 0.699 0.701 0.0
388499090 617 unknown [Medicago truncatula] 0.926 0.675 0.724 0.0
356517213 613 PREDICTED: dolichyl-diphosphooligosaccha 0.94 0.690 0.711 0.0
357467147 616 Dolichyl-diphosphooligosaccharide-protei 0.926 0.676 0.724 0.0
356508519 619 PREDICTED: dolichyl-diphosphooligosaccha 0.94 0.683 0.706 1e-179
449452999 610 PREDICTED: dolichyl-diphosphooligosaccha 0.955 0.704 0.697 1e-174
>gi|225457618|ref|XP_002274236.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 [Vitis vinifera] gi|297745585|emb|CBI40750.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/423 (76%), Positives = 366/423 (86%)

Query: 7   MALRFDLIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLL 66
           M  RFDL I  I + + PVLSDLILSKVDRRIDLTSQ+VRITSTLKVEN G++PVSEVLL
Sbjct: 1   MGFRFDLFIVLIAILSVPVLSDLILSKVDRRIDLTSQVVRITSTLKVENSGNDPVSEVLL 60

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
           AFP+ Q K+LA L AS  EGKGK K  ++SLPVE V P GMP AL FY+V LPK LGKG+
Sbjct: 61  AFPEHQEKNLAYLTASFREGKGKGKGSTSSLPVEVVHPQGMPPALVFYSVSLPKGLGKGE 120

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESY 186
           S T DVL VF H+L+PFP++ITQAD QLVVFQ+S  YL+PY VK QSLSVKLP++RIESY
Sbjct: 121 SLTLDVLVVFTHSLKPFPKEITQADFQLVVFQDSGHYLSPYEVKFQSLSVKLPDARIESY 180

Query: 187 TKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVT 246
           T+LENTK  GSEIKYGPYEN P FSYSPIVVHFE NQPFAV +++VREIEISHWGNVQVT
Sbjct: 181 TRLENTKTVGSEIKYGPYENHPPFSYSPIVVHFEQNQPFAVAEQLVREIEISHWGNVQVT 240

Query: 247 EHYKLVHGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSN 306
           EHYKL+H GAQ+KGEFSRLDYQARP +RGASAF++L+AK+PPR HSVY+RDEIGNISTS+
Sbjct: 241 EHYKLIHAGAQSKGEFSRLDYQARPHVRGASAFRHLVAKLPPRAHSVYFRDEIGNISTSH 300

Query: 307 LWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVI 366
           LWGD KKTEL IEPRYP+FGGWRT+F IGYGLPL+DFLFE  G RFLNITFG PMNE+VI
Sbjct: 301 LWGDLKKTELEIEPRYPMFGGWRTSFFIGYGLPLQDFLFESGGKRFLNITFGCPMNEVVI 360

Query: 367 DNLIVKVVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQL 426
           DNLIVKVVLPEGS DISVSAPF V QW+ETKLSHLD+ GRPV VL+KTNVVPEHNQ FQ+
Sbjct: 361 DNLIVKVVLPEGSRDISVSAPFAVKQWQETKLSHLDIVGRPVAVLEKTNVVPEHNQHFQV 420

Query: 427 IWQ 429
            ++
Sbjct: 421 YYK 423

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147815138|emb|CAN59776.1| hypothetical protein VITISV_024651 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224086092|ref|XP_002307811.1| predicted protein [Populus trichocarpa] gi|222857260|gb|EEE94807.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255539294|ref|XP_002510712.1| ribophorin, putative [Ricinus communis] gi|223551413|gb|EEF52899.1| ribophorin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061851|ref|XP_002300630.1| predicted protein [Populus trichocarpa] gi|118483703|gb|ABK93745.1| unknown [Populus trichocarpa] gi|222842356|gb|EEE79903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499090|gb|AFK37611.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356517213|ref|XP_003527283.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357467147|ref|XP_003603858.1| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] gi|355492906|gb|AES74109.1| Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit [Medicago truncatula] Back     alignment and taxonomy information
>gi|356508519|ref|XP_003523003.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449452999|ref|XP_004144246.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus] gi|449489357|ref|XP_004158288.1| PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:2014579 614 AT1G76400 "AT1G76400" [Arabido 0.926 0.679 0.645 4e-145
TAIR|locus:2065378464 AT2G01720 "AT2G01720" [Arabido 0.915 0.887 0.521 1.1e-112
WB|WBGene00020683 586 ribo-1 [Caenorhabditis elegans 0.9 0.691 0.372 1.1e-69
ZFIN|ZDB-GENE-030131-4286 598 rpn1 "ribophorin I" [Danio rer 0.906 0.682 0.375 4.9e-69
UNIPROTKB|E2RQ08 607 RPN1 "Uncharacterized protein" 0.873 0.647 0.380 6.3e-69
MGI|MGI:98084 608 Rpn1 "ribophorin I" [Mus muscu 0.873 0.646 0.383 6.3e-69
UNIPROTKB|P04843 607 RPN1 "Dolichyl-diphosphooligos 0.873 0.647 0.383 1.3e-68
UNIPROTKB|E1C0F1 601 RPN1 "Dolichyl-diphosphooligos 0.837 0.627 0.395 1.7e-68
UNIPROTKB|A3KN04 609 RPN1 "Uncharacterized protein" 0.873 0.645 0.383 2.1e-68
UNIPROTKB|F1SPG2 608 RPN1 "Dolichyl-diphosphooligos 0.873 0.646 0.385 2.1e-68
TAIR|locus:2014579 AT1G76400 "AT1G76400" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
 Identities = 269/417 (64%), Positives = 329/417 (78%)

Query:    13 LIIFTILLFASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQ 72
             L++  I L A+P  SDL+LSKV+RRID+TSQI R+T TLKV N GSE VSE  L FP   
Sbjct:    11 LLLLAIALLATPAFSDLVLSKVERRIDVTSQIARVTKTLKVVNSGSESVSEFALTFPKFL 70

Query:    73 VKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDV 132
               +LA L  +P EGKGK K    +L V      G+P +++ Y+V LPK L KGD+ T +V
Sbjct:    71 GNNLAYLSVAPSEGKGKSKRTLVNLSVREADQKGLPDSISVYSVALPKPLSKGDTLTLEV 130

Query:   133 LAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENT 192
             +A F + L+PFPEKITQ +I LV+ QESA YL+PY V+ QSLS+KLP +RIESYTK ENT
Sbjct:   131 VAAFTNVLQPFPEKITQGEIHLVMLQESAQYLSPYAVESQSLSIKLPNARIESYTKFENT 190

Query:   193 KIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLV 252
             K+ GSE+KYGPY+NL S+SYSPIVVHFES   FAV +++VREIE+SHWGNVQVTE+Y +V
Sbjct:   191 KLQGSELKYGPYKNLQSYSYSPIVVHFESKAAFAVAEKLVREIEVSHWGNVQVTENYNVV 250

Query:   253 HGGAQNKGEFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSK 312
             H GAQ KGEFSRLD+QARP  RGASAF++L+A++PPR HS+YYRD+IGNISTS +  DSK
Sbjct:   251 HRGAQLKGEFSRLDFQARPNPRGASAFRHLLARLPPRAHSIYYRDDIGNISTSEMKSDSK 310

Query:   313 KTELLIEPRYPLFGGWRTAFTIGYGLPLKDFLFELEGNRFLNITFGSPMNELVIDNLIVK 372
             KTELLIEPR+PLFGGW+T FTIGYGLPL DFLF  EG RFLNI+FGSP+ +LV + LIV+
Sbjct:   311 KTELLIEPRFPLFGGWKTFFTIGYGLPLTDFLFASEGKRFLNISFGSPILDLVTEKLIVQ 370

Query:   373 VVLPEGSGDISVSAPFPVNQWEETKLSHLDLTGRPVVVLQKTNVVPEHNQFFQLIWQ 429
             VVLPEGS DISV+ PF V Q +E K SHLD+ GRPVVVL+K NVVP+HNQ  Q+ ++
Sbjct:   371 VVLPEGSKDISVTTPFAVKQSQEIKYSHLDIAGRPVVVLEKNNVVPDHNQHIQVYYK 427
GO:0004576 "oligosaccharyl transferase activity" evidence=ISS
GO:0004579 "dolichyl-diphosphooligosaccharide-protein glycotransferase activity" evidence=IEA
GO:0005783 "endoplasmic reticulum" evidence=IEA;IDA
GO:0006486 "protein glycosylation" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016021 "integral to membrane" evidence=IEA
GO:0016020 "membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
TAIR|locus:2065378 AT2G01720 "AT2G01720" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00020683 ribo-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-4286 rpn1 "ribophorin I" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQ08 RPN1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:98084 Rpn1 "ribophorin I" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P04843 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1C0F1 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A3KN04 RPN1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SPG2 RPN1 "Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFX3OST1A_ARATH2, ., 4, ., 9, 9, ., 1, 80.65110.90440.6628yesno
Q0DJC5OST1A_ORYSJ2, ., 4, ., 9, 9, ., 1, 80.63520.89110.6520yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.1190.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00002915001
SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (602 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00002845001
SubName- Full=Chromosome chr1 scaffold_136, whole genome shotgun sequence; (850 aa)
     •  0.800
GSVIVG00028567001
SubName- Full=Chromosome chr7 scaffold_44, whole genome shotgun sequence; (687 aa)
   • •• 0.556
GSVIVG00015676001
SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (115 aa)
   • •• 0.537
GSVIVG00037066001
SubName- Full=Chromosome chr17 scaffold_85, whole genome shotgun sequence; (741 aa)
   •••• 0.416

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
pfam04597429 pfam04597, Ribophorin_I, Ribophorin I 1e-151
>gnl|CDD|218165 pfam04597, Ribophorin_I, Ribophorin I Back     alignment and domain information 
 Score =  436 bits (1123), Expect = e-151
 Identities = 168/405 (41%), Positives = 238/405 (58%), Gaps = 14/405 (3%)

Query: 28  DLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGK 87
                 V+R IDLT   V+ T  + ++N G EP SE   AFP  +  +LA L A   +  
Sbjct: 1   VWENVNVERTIDLTKSYVKETIKITIKNIGDEPQSEYYFAFPPDEADNLAGLSAK--DKD 58

Query: 88  GKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKI 147
            K K     + VEN    G      ++ + LPK L  G+  T  V  V  + L+P P +I
Sbjct: 59  AKEKGKFEPIEVENGSDTG------YFKITLPKPLAPGEQVTLKVSYVLTNPLKPLPAEI 112

Query: 148 TQADIQLVVFQESAFYLTPYVVKVQSLSVKLPESRIESYTKLENTKIH--GSEIKYGPYE 205
           TQ++ QL++++ +A++ +PY  K Q   +K P   I SYTK  N      G+ + YGPYE
Sbjct: 113 TQSEKQLLLYETNAYFYSPYPTKKQKTKIKGPSGNILSYTKTPNLPPTRQGNTLTYGPYE 172

Query: 206 NLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKGEFSRL 265
           N+P+FS  PI VH+E+N+P      + R+IE+SHWGN+ V E+Y+L + GA+ KG FSR+
Sbjct: 173 NVPAFSLEPITVHYENNKPLITVTNLERDIEVSHWGNIAVEEYYELTNNGAKLKGGFSRV 232

Query: 266 DYQ-ARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPL 324
           DYQ    + R +SA K L   +P     VYY DEIGN+STS +  D    EL ++PR+PL
Sbjct: 233 DYQKGSYSTRNSSALKSLKTPLPAGATDVYYTDEIGNVSTSRVREDKDSAELELKPRFPL 292

Query: 325 FGGWRTAFTIGYGLPLKDFLFELEGNRF-LNITFGSPMNELVIDNLIVKVVLPEGSGDIS 383
           FGGW+  FTIG+ LPL DFL +   N + L + F +   ++V DN+ +KV+LPEG+ DI 
Sbjct: 293 FGGWKYNFTIGWNLPLSDFLRKDGDNTYVLKVPFLNGPKDVVYDNVTLKVILPEGAEDIK 352

Query: 384 VSAPFPVNQWE-ETKLSHLDLTGRPVVVLQKTNVVPEHN-QFFQL 426
           V  PFP++  E E + S+LD  GRPVV L+K N+V EH  Q   +
Sbjct: 353 VETPFPIDSVELELEKSYLDTKGRPVVTLEKKNLVDEHRDQDVLV 397

Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as Dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (EC:2.4.1.119). OST catalyzes the transfer of an oligosaccharide from dolichol pyrophosphate to selected asparagine residues of nascent polypeptides as they are translocated into the lumen of the rough endoplasmic reticulum. Ribophorin I and OST48 are though to be responsible for OST catalytic activity. Both yeast and mammalian proteins are glycosylated but the sites are not conserved. Glycosylation may contribute towards general solubility but is unlikely to be involved in a specific biochemical function Most family members are predicted to have a transmembrane helix at the C terminus of this region. Length = 429

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
KOG2291 602 consensus Oligosaccharyltransferase, alpha subunit 100.0
PF04597432 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ri 100.0
PF08487118 VIT: Vault protein inter-alpha-trypsin domain; Int 93.87
smart00609130 VIT Vault protein Inter-alpha-Trypsin domain. 90.08
>KOG2291 consensus Oligosaccharyltransferase, alpha subunit (ribophorin I) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-128  Score=995.34  Aligned_cols=412  Identities=50%  Similarity=0.810  Sum_probs=392.4

Q ss_pred             ccCccCCceEEeEEEEEEEcCCCeEEEEEEEEEEeCCCCCeeEEEEEeCCccccceeEEEEEecCCCcccccccccccee
Q 013053           21 FASPVLSDLILSKVDRRIDLTSQIVRITSTLKVENEGSEPVSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVE  100 (450)
Q Consensus        21 ~~~~~~~~~~n~~v~R~Idl~~~~vk~~~~i~ikN~g~~p~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~  100 (450)
                      |++.+.++|+|.|++|||||++++||++++++++|+|++|+++|.++++..+..+||+++|...+++++   +...+++.
T Consensus        23 ~a~~a~~~w~n~nv~RTIDlsS~ivK~tt~l~i~N~g~ePatey~~a~~~~~~~~la~ls~~~~~g~~~---~~l~~s~~   99 (602)
T KOG2291|consen   23 AASSAEQDWVNVNVERTIDLSSQIVKVTTELSIENIGSEPATEYLLAFEKELGASLAFLSVAFTEGKKK---TLLKLSVN   99 (602)
T ss_pred             cccCCccccccccceEEEehhhhhhhheeEEEEEecCCCchheEEEeccCccccceeEEEEeeccCccc---cccccccC
Confidence            367778999999999999999999999999999999999999999999999999999999988777654   23456666


Q ss_pred             eecCCCCCCcceEEEEEcCCcCCCCCeEEEEEEEEecccccccCcccccCcceEEEEEecceeeCcceeeEEEEEEEecC
Q 013053          101 NVKPNGMPAALTFYAVKLPKALGKGDSYTFDVLAVFAHALRPFPEKITQADIQLVVFQESAFYLTPYVVKVQSLSVKLPE  180 (450)
Q Consensus       101 ~~~~~~~~~~~~~~~I~Lp~pl~p~~~v~l~v~~~~~~~l~P~P~~I~q~e~Q~l~f~~n~y~~SpY~t~~q~t~v~l~s  180 (450)
                      +.+.++.++  ++|.|+||.||.||++++|.|++++++.++|+|++|+|+|+|+|+|.+|+|++|||.|++|+|+|++||
T Consensus       100 ~~~~~~~~~--~~y~v~lp~pl~pge~vTl~V~~~~t~vl~P~Pe~I~QsE~Q~vv~~tn~~~~SpY~Tk~Q~t~ikl~S  177 (602)
T KOG2291|consen  100 PPKKDGASE--RVYTVTLPNPLSPGEKVTLIVEAVLTHVLRPLPEEITQSEEQFVVYETNAYLLSPYDTKSQSTTIKLPS  177 (602)
T ss_pred             CcccCCCcc--ceEEEeCCCCCCCCceEEEEEEeecccCcccChhhhCcCceeeEEEeccccccCcccccceeEEEEccc
Confidence            666554322  799999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcceeeccCCceeecCeEEecccccCCCCCccCEEEEEEeccceeEEEEEEEEEEEeeceEEEEEEEEEEEEcCCCCCC
Q 013053          181 SRIESYTKLENTKIHGSEIKYGPYENLPSFSYSPIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGGAQNKG  260 (450)
Q Consensus       181 ~~i~s~t~~~~~~~~~~~i~YGP~~~v~p~s~~~i~vhye~n~P~~~v~~L~R~IeVSHWGnI~vEE~y~l~N~GA~Lkg  260 (450)
                      ++|++||+.++.+++|+.++||||+|+|+|+.+|+.||||||.||+++++|+|+|||||||||+|||+|+|+|+||+|||
T Consensus       178 s~ies~T~~~~~k~~gn~l~yGPyeni~afs~~pl~VhYEnnaPf~~v~~L~R~IevSHWgnIqVeE~~~lth~gAkLkg  257 (602)
T KOG2291|consen  178 SKIESYTTVEPSKRSGNELKYGPYENIPAFSQEPLVVHYENNAPFVTVENLEREIEVSHWGNIQVEENYELTHKGAKLKG  257 (602)
T ss_pred             ccceeccccCcccccCceeeecCccccccccCCceEEEEecCCCcceeeeEEEEEEeecceeeEEEEEEEEEecceeccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhhccCcCccccceeeEeeeccCCcccCeEEEeccceeeeeeeecCCCeeEEEEcccCcccCCcceeEEEeecCCc
Q 013053          261 EFSRLDYQARPTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRTAFTIGYGLPL  340 (450)
Q Consensus       261 ~FSR~d~~~~~~~~~~~~~~~l~~~LP~~a~d~YY~D~IGNISTS~~r~~~~~~~l~l~PRfPLfGGWk~~FtiGyn~pl  340 (450)
                      +|||+|||++...++.++++++.+.||++|+|+||||+||||||||+|.+.++++|+|+|||||||||||+|++|||+|+
T Consensus       258 ~FSR~d~q~~~~~~g~sai~~l~~~LP~~A~dvYYrDeiGNISTShmr~~~~~~eleirPRfPlFGGWkt~ftiGy~lP~  337 (602)
T KOG2291|consen  258 PFSRLDYQKQRRTRGASAINSLKTVLPARAKDVYYRDEIGNISTSHMRIDPDKTELEIRPRFPLFGGWKTNFTIGYNLPL  337 (602)
T ss_pred             CcchHhhhhcCCcCcchHHHHHHhhCCCccCceeeecccCcEehhhhcccCccceEEeccCCccccCceeeEEEecCCcH
Confidence            99999999997668899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEecCCeEEEEEeecC-CCCceEEEEEEEEEEcCCCCccceeeCCccee-eeceeEEEeccCCCCcEEEEEecCCCc
Q 013053          341 KDFLFELEGNRFLNITFGS-PMNELVIDNLIVKVVLPEGSGDISVSAPFPVN-QWEETKLSHLDLTGRPVVVLQKTNVVP  418 (450)
Q Consensus       341 ~~~L~~~~~~yiL~vp~~~-~~~d~~~d~~~l~IiLPEGA~~i~v~~P~~v~-~~~~~~~tyLDt~GRpvv~l~~~Nlv~  418 (450)
                      ++||++.|++|.|+++|.. ++++++||+++++|+|||||+||++.+||+++ .++++++|||||.||||++++++|+++
T Consensus       338 ~eyl~~~g~ry~L~~~~~~~~~d~~V~dkl~ikvvLPEGak~i~i~tP~~is~~p~e~~~syLDt~GR~Vvv~ek~Nvv~  417 (602)
T KOG2291|consen  338 EEYLFSKGRRYALKIILIDHIFDDTVYDKLTIKVVLPEGAKDIEIDTPYEISRSPIELKYSYLDTNGRPVVVLEKNNVVP  417 (602)
T ss_pred             HHHhhccCceeEEccccccCCCccceeeeEEEEEEccCCCcccccccceeeccCchhhhhhhhhccCcEEEEEEccccCC
Confidence            9999998999999999955 68888999999999999999999999999999 679999999999999999999999999


Q ss_pred             CCcceEEEEeeccccCcccccccccccce
Q 013053          419 EHNQFFQLIWQDCSGMKFKQQFNKLKMLS  447 (450)
Q Consensus       419 ~h~~~~~v~Y~~~~~~~~~~~~~~~~~l~  447 (450)
                      .|+++|+|+|          +|++..||+
T Consensus       418 ~h~~~i~v~Y----------~f~~~sml~  436 (602)
T KOG2291|consen  418 DHNQDIVVHY----------TFSKSSMLQ  436 (602)
T ss_pred             CCCccEEEEE----------EechhHhhh
Confidence            9999999999          999999997

>PF04597 Ribophorin_I: Ribophorin I; InterPro: IPR007676 Ribophorin I is an essential subunit of oligosaccharyltransferase (OST), which is also known as dolichyl-diphosphooligosaccharide--protein glycosyltransferase, (2 Back     alignment and domain information
>PF08487 VIT: Vault protein inter-alpha-trypsin domain; InterPro: IPR013694 Inter-alpha-trypsin inhibitors (ITIs) consist of one light chain and a variable set of heavy chains Back     alignment and domain information
>smart00609 VIT Vault protein Inter-alpha-Trypsin domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 59.5 bits (143), Expect = 2e-09
 Identities = 70/397 (17%), Positives = 117/397 (29%), Gaps = 111/397 (27%)

Query: 20  LFASPVLSD--LILSKV-DRRI----D------LTSQIVRITSTLKVENEGSEPVSEVLL 66
           L  S    +  L+L  V + +     +      LT++  ++T  L         +    +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 67  AFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAVKLPKALGKGD 126
                +VK L LLK         +      LP E +     P  L+  A  +   L   D
Sbjct: 297 TLTPDEVKSL-LLKY--------LDCRPQDLPREVLT--TNPRRLSIIAESIRDGLATWD 345

Query: 127 SYTFDVLAVFAHALRPFPEKITQADIQ-----LVVFQESA-----------FYLTPYVVK 170
           ++           +      +  A+ +     L VF  SA           F +    V 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 171 --VQSLSVK-LPESRIESYT------------KLEN-TKIHGSEI-KYGPYENLPSFSYS 213
             V  L    L E + +  T            KLEN   +H S +  Y   +   S    
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 214 PIVVHFESNQPFAVGQEVVREIEISHWGNVQVTEHYKLVHGG-AQNKGEFSR--LDYQAR 270
           P    +     +            SH G       + L +    +    F    LD    
Sbjct: 466 PP---YLDQYFY------------SHIG-------HHLKNIEHPERMTLFRMVFLD---- 499

Query: 271 PTIRGASAFKYLIAKMPPRVHSVYYRDEIGNISTSNLWGDSKKTELLIEPRYPLFGGWRT 330
                   F++L  K+    H     +  G  S  N     K  +  I    P +     
Sbjct: 500 --------FRFLEQKI---RHDSTAWNASG--SILNTLQQLKFYKPYICDNDPKYERLVN 546

Query: 331 AFTIGYGLPLKDFLFELEGN----RFLNITFGSPMNE 363
           A        + DFL ++E N    ++ ++   + M E
Sbjct: 547 A--------ILDFLPKIEENLICSKYTDLLRIALMAE 575

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
d1jv2a2139 Thigh, calf-1 and calf-2 domains of integrin alpha 81.06
>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Integrin domains
family: Integrin domains
domain: Thigh, calf-1 and calf-2 domains of integrin alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.06  E-value=5.5  Score=32.23  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=56.3

Q ss_pred             EEcCCCeEEEEEEEEEEeCCCCC-eeEEEEEeCCccccceeEEEEEecCCCccccccccccceeeecCCCCCCcceEEEE
Q 013053           38 IDLTSQIVRITSTLKVENEGSEP-VSEVLLAFPDLQVKDLALLKASPHEGKGKVKSLSASLPVENVKPNGMPAALTFYAV  116 (450)
Q Consensus        38 Idl~~~~vk~~~~i~ikN~g~~p-~~~y~~~l~~~~~~~ls~isa~~~~~k~k~~~~~~~l~~~~~~~~~~~~~~~~~~I  116 (450)
                      +=+++. -...++++++|.|..+ .+..++.+|++    |.|.++......      ...+.+.....    .+......
T Consensus        19 l~vGs~-~~l~l~v~V~N~GE~AY~a~l~v~~P~~----L~y~~v~~~~~~------~~~v~C~~~~~----~~~~~v~C   83 (139)
T d1jv2a2          19 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPLQ----ADFIGVVRNNEA------LARLSCAFKTE----NQTRQVVC   83 (139)
T ss_dssp             EESSSC-EEEEEEEEEEECSSCBSSCEEEEECCTT----CCEEEECCSSTT------SBCCCCEEEES----SSCEEEEE
T ss_pred             EEECCC-CEEEEEEEEEECCCChhhEEEEEEcCCC----CCEEeeeecCCC------CceeeccccCC----CCcEEEEE
Confidence            335544 4688999999999777 77788888865    556655322111      12355654322    12346788


Q ss_pred             EcCCcCCCCCeEEEEEEEEec
Q 013053          117 KLPKALGKGDSYTFDVLAVFA  137 (450)
Q Consensus       117 ~Lp~pl~p~~~v~l~v~~~~~  137 (450)
                      .|..|++.|+++++.+..-..
T Consensus        84 ~lGnP~~~~~~~~f~l~f~~~  104 (139)
T d1jv2a2          84 DLGNPMKAGTQLLAGLRFSVH  104 (139)
T ss_dssp             ECCSSBCSSCBCCEEEEEEEC
T ss_pred             ECCCcccCCCEEEEEEEEEee
Confidence            999999999999888886553