Citrus Sinensis ID: 013055

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
Protein Sequence
MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVVC
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEEEcccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccEEEEEEcccccccccccccEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEcccccccHHHHHHccccccccccccccccccHHHHcccccccccccHHHHHHHHcccccccccccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccEEEEEEcccEEEccccccEEHcccEEEccccccccEEEEcccc
Coil and Loop (DISEMBL)
magnedrastassaslkpsttpsrptitlpprasfteslfnnngpgsgfgfgfspgpmtlvsnffadsddcKSFSQLLAGamsspaaghlrpnfseqaergsgdaeagdadfrfkqnrpaglviaqpppifavppglspatllespnfglfspaqgafgMTHQQALAQVTAQAAQAQshtqipaeypsslssapttsmtqVSSLtantttnqqmtplmpdssvqmkessdfshsdqrpqsssyvsdkpaddpynwrkygqkhvkgsefprsyykcthpncpvkkkversldGQVTEIIYkgqhnhpppqsnkrakdagslngnlnnqgSSELASQLkegagysmskkdqessqvtpenisgtsdseevgdaetavfekdedepdakrrsteirvseptashrtvtepriivqttsevdllddgyrwrkygqkvvkgnpyprsYIFSLVVC
Flexible Loop (DISEMBL)
magnedrastassaslkpsttpsrptiTLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSdfshsdqrpqsssyvsdkpaddpyNWRKYGQKHVkgsefprsyykcthpncpvkkkveRSLDGQVTEIIYkgqhnhpppqsNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSmskkdqessqvtpenisgtsdseevgdaetavfekdedepdakrrsteirvseptashrtvtepriivqttsevdllddgyRWRKygqkvvkgnpyprsyIFSLVVC
Low Complexity Region (SEG)
MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLfnnngpgsgfgfgfspgpMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHqqalaqvtaqaaqaqSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAgslngnlnnqgsselASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVVC
Disordered region (IsUnstruct)
***********************************************GFGFGFSPGPMTLVSNFFADSDDCK************************************************GLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFG***********************************************************************************************WRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIY***********************************************************************************************************PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV*
Disordered Region (DISOPRED)
****************************************************FSPGPMTLVS**********************************************************************VPPGLSPATLLESPNFG*****************************************************************************************************DPYNW*****************YKCTHPNCPVKK******DGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTE*RIIV****EVDLLDDGYRWRKY********PYPRSYIFSLVVC
Disordered Region (DISEMBL)
************************PTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFS************GDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQ***************************************LTANTTTNQQMTPLMP***************************KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQH*************AGSLNGNLNNQGSSELASQLK******************************************************************VTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVVC
Disordered Region (DISPRO)
***********************RPTITLPPRASFTESLFNNNG******FGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQN***********************************************************************************************************************RPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQH****************************************************************************************************VTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVVC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVVC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	450	2.2.26 [Sep-21-2011]
Q9XI90	514	Probable WRKY transcripti	yes	no	0.922	0.807	0.590	1e-128
Q9ZQ70	513	Probable WRKY transcripti	no	no	0.9	0.789	0.596	1e-123
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.615	0.146	0.459	7e-59
Q93WV0	557	Probable WRKY transcripti	no	no	0.722	0.583	0.386	1e-53
O65590	568	Probable WRKY transcripti	no	no	0.633	0.501	0.388	7e-52
Q8S8P5	519	Probable WRKY transcripti	no	no	0.64	0.554	0.411	2e-49
Q93WU7	423	Probable WRKY transcripti	no	no	0.422	0.449	0.495	4e-49
Q9FG77	687	Probable WRKY transcripti	no	no	0.697	0.457	0.363	7e-48
Q9C5T3	309	Probable WRKY transcripti	no	no	0.486	0.708	0.375	3e-42
Q9ZUU0	429	WRKY transcription factor	no	no	0.424	0.445	0.426	2e-38

>sp|Q9XI90|WRKY4_ARATH Probable WRKY transcription factor 4 OS=Arabidopsis thaliana GN=WRKY4 PE=1 SV=2

 Score =  457 bits (1175), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 271/459 (59%), Positives = 314/459 (68%), Gaps = 44/459 (9%)

Query: 1   MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTL 60
           M+  E+  ST+ S        PSRPT++LPPR  F+E  FN        G GFSPGPMTL
Sbjct: 1   MSEKEEAPSTSKSTG-----APSRPTLSLPPRP-FSEMFFNG-------GVGFSPGPMTL 47

Query: 61  VSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNF---SEQAERGSG-DAEAGDADFRFKQ 116
           VSN F DSD+ +SFSQLLAGAMSSPA           S+    G G ++ +GD D RFKQ
Sbjct: 48  VSNMFPDSDEFRSFSQLLAGAMSSPATAAAAAAAATASDYQRLGEGTNSSSGDVDPRFKQ 107

Query: 117 NRPAGLVIAQP--PPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHQQALAQVTAQA 173
           NRP GL+I+Q   P +F VPPGLSPA LL+SP+F GLFSP QG++GMTHQQALAQVTAQA
Sbjct: 108 NRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLFSPVQGSYGMTHQQALAQVTAQA 167

Query: 174 AQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSH 233
            QA ++ Q   EYP      P + +   SS  A   T+    PL        +E+SD + 
Sbjct: 168 VQANANMQPQTEYP------PPSQVQSFSSGQAQIPTS---APL-----PAQRETSDVTI 213

Query: 234 SDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQ 293
            + R Q    V DKPADD YNWRKYGQK VKGSEFPRSYYKCT+P CPVKKKVERSLDGQ
Sbjct: 214 IEHRSQQPLNV-DKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQ 272

Query: 294 VTEIIYKGQHNHPPPQSNKRA-KD---AGSLNGNLNNQGSSEL-ASQLKEGAGYSMSKKD 348
           VTEIIYKGQHNH PPQ+ KR  KD     + +   NN+GSSEL ASQ +  +     ++ 
Sbjct: 273 VTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQ 332

Query: 349 QE--SSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSE--PTASHRTV 404
            E  S   T E++S  SD EEVG+ ET V EKDE+EPD KRRSTE+R+SE  P ASHRTV
Sbjct: 333 HEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTV 392

Query: 405 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 393 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 431

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZQ70|WRKY3_ARATH Probable WRKY transcription factor 3 OS=Arabidopsis thaliana GN=WRKY3 PE=2 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 270/453 (59%), Positives = 314/453 (69%), Gaps = 48/453 (10%)

Query: 14  ASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKS 73
           + LK ST  SRPTI+LPPR  F E  F+        G GFSPGPMTLVSN F+D D+ KS
Sbjct: 10  SKLKSSTGVSRPTISLPPRP-FGEMFFSG-------GVGFSPGPMTLVSNLFSDPDEFKS 61

Query: 74  FSQLLAGAMSSPAAG------------HLRPNFSEQAERGSGDAEAGDADFRFKQNRPAG 121
           FSQLLAGAM+SPAA             H  P  S     GSG         RFKQ+RP G
Sbjct: 62  FSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDP----RFKQSRPTG 117

Query: 122 LVIAQPPPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHQQALAQVTAQAAQAQS-H 179
           L+I QPP +F VPPGLSPATLL+SP+F GLFSP QG FGMTHQQALAQVTAQA Q  + H
Sbjct: 118 LMITQPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQAVQGNNVH 177

Query: 180 TQIP--AEYPSSLSSAPTT----SMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSH 233
            Q    +EYPSS           S+T++ S ++      Q+   + ++S   +E+S+ S 
Sbjct: 178 MQQSQQSEYPSSTQQQQQQQQQASLTEIPSFSS--APRSQIRASVQETSQGQRETSEISV 235

Query: 234 SDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQ 293
            + R Q  +  +DKPADD YNWRKYGQK VKGS+FPRSYYKCTHP CPVKKKVERSLDGQ
Sbjct: 236 FEHRSQPQN--ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQ 293

Query: 294 VTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLK-EGAGYSMSKKDQESS 352
           VTEIIYKGQHNH  PQ  KR  + GS         SS++A+Q +   +  + SK+DQE+S
Sbjct: 294 VTEIIYKGQHNHELPQ--KRGNNNGSCK-------SSDIANQFQTSNSSLNKSKRDQETS 344

Query: 353 QV-TPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTA-SHRTVTEPRII 410
           QV T E +S  SDSEEVG+AET+V E+ EDEPD KRR+TE+RVSEP A SHRTVTEPRII
Sbjct: 345 QVTTTEQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRII 404

Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 405 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 437

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  228 bits (581), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 143/311 (45%), Positives = 182/311 (58%), Gaps = 34/311 (10%)

Query: 141 TLLESPNF--GLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSAPTTSM 198
           T+L   +F        +G + MT+QQA      Q  QA ++ Q   EYPSS +       
Sbjct: 375 TILPEDDFPIDFLDKVEGPYEMTYQQA------QTVQANANMQPQTEYPSSSAVQ----- 423

Query: 199 TQVSSLTANTTTNQQMTPLMPDSSVQMKESSD----FSHSDQRPQSSSYVSDKPADDPYN 254
                  + ++   Q+    PDSS+  K ++       H  Q+P +     DK  +D YN
Sbjct: 424 -------SFSSGQPQIPTSAPDSSLLAKSNTSGITIIEHMSQQPLNV----DKQVNDGYN 472

Query: 255 WRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRA 314
           W+KYGQK VKGS+FP SYYKCT+  CP K+KVERSLDGQV EI+YK +HNH PP   K  
Sbjct: 473 WQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPNQGKDG 532

Query: 315 KDAGSLNG---NLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDA 371
                L+G   ++N   S   ASQ        + +++  S   T E +S  SD+EE  + 
Sbjct: 533 STT-YLSGSSTHINCMSSELTASQFSSNKT-KIEQQEAASLATTIEYMSEASDNEEDSNG 590

Query: 372 ETAVFEKDEDEPDAKRRSTEIRVSEPT-ASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYG 430
           ET+  EKDEDEP+ KRR TE++VSE   AS RTV EPR+I QTTSEVD LDDGYRWRKYG
Sbjct: 591 ETSEGEKDEDEPEPKRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDGYRWRKYG 650

Query: 431 QKVVKGNPYPR 441
           QKVVKGNPYPR
Sbjct: 651 QKVVKGNPYPR 661

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV0|WRK20_ARATH Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1

 Score =  211 bits (536), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 144/373 (38%), Positives = 187/373 (50%), Gaps = 48/373 (12%)

Query: 113 RFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNF-------------GLFSPAQGAFG 159
           R+K   PA L I++   I  +PPGLSP + LESP F              LF P      
Sbjct: 37  RYKLMSPAKLPISRSTDI-TIPPGLSPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHIS 95

Query: 160 MT---------HQQALAQVTAQAAQAQ--SHTQIPAEYPSSLSSAPTTSMTQV------- 201
            +         HQ    +  +   + +  +   + AE     S  P     Q        
Sbjct: 96  ASSSSYTGRGFHQNTFTEQKSSEFEFRPPASNMVYAELGKIRSEPPVHFQGQGHGSSHSP 155

Query: 202 ---------SSLTANTTTNQQMTPLMPD--SSVQMKESSDFSHSDQRPQSSSYVSDKPAD 250
                    SS  +  T   QMTP   D  +    +ES   S +D R  + S +    AD
Sbjct: 156 SSISDAAGSSSELSRPTPPCQMTPTSSDIPAGSDQEESIQTSQNDSRGSTPSIL----AD 211

Query: 251 DPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQS 310
           D YNWRKYGQKHVKGSEFPRSYYKCTHPNC VKK  ERS DGQ+T+IIYKG H+HP PQ 
Sbjct: 212 DGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHDHPKPQP 271

Query: 311 NKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGD 370
            +R     +      ++  S      K    Y++S  ++++       IS + D  E   
Sbjct: 272 GRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDDGGEAAA 331

Query: 371 AETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYG 430
           +     E D+D+P +KRR  E  + E T   + + EPR++VQT SEVD+LDDGYRWRKYG
Sbjct: 332 SNRNKDEPDDDDPFSKRRRMEGAM-EITPLVKPIREPRVVVQTLSEVDILDDGYRWRKYG 390

Query: 431 QKVVKGNPYPRSY 443
           QKVV+GNP PRSY
Sbjct: 391 QKVVRGNPNPRSY 403

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|O65590|WRK34_ARATH Probable WRKY transcription factor 34 OS=Arabidopsis thaliana GN=WRKY34 PE=2 SV=1

 Score =  205 bits (521), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 137/353 (38%), Positives = 177/353 (50%), Gaps = 68/353 (19%)

Query: 124 IAQPPPIFAVPPGLSPATLLESPNFG---LFSPAQGAFGMTHQQALAQVTAQAAQAQSHT 180
           I Q   +    PGLSPATLLESP F    L SP  G         L+ V +  A+A+   
Sbjct: 77  ILQSKSLTISSPGLSPATLLESPVFLSNPLLSPTTGK--------LSSVPSDKAKAELFD 128

Query: 181 QIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQS 240
            I                   +SL   T +   + P   + +++  +S D+         
Sbjct: 129 DI------------------TTSLAFQTISGSGLDP--TNIALEPDDSQDYEERQLGGLG 168

Query: 241 SSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYK 300
            S     PADD YNWRKYGQK VKGSE+PRSYYKCTHPNC  KKKVERS +G + EIIY 
Sbjct: 169 DSMACCAPADDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYT 228

Query: 301 GQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQE-SSQVTPENI 359
           G H H  P  N+R+    S  G        ++     E  G++ + ++ E +S V+ E  
Sbjct: 229 GDHIHSKPPPNRRSGIGSSGTGQ-------DMQIDATEYEGFAGTNENIEWTSPVSAELE 281

Query: 360 SGT-SDSEEV---------GDAETAVFEKDEDEPD-------------------AKRRST 390
            G+ S S +V         GDA      +DE+E D                   +KRR  
Sbjct: 282 YGSHSGSMQVQNGTHQFGYGDAAADALYRDENEDDRTSHMSVSLTYDGEVEESESKRRKL 341

Query: 391 EIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           E   +E + S R   EPR++VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSY
Sbjct: 342 EAYATETSGSTRASREPRVVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSY 394

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  196 bits (499), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/340 (41%), Positives = 188/340 (55%), Gaps = 52/340 (15%)

Query: 137 LSPATLLESPNFG------LFSPAQGAF--GMTHQQALAQVTAQAAQAQSHTQIPAEYPS 188
            SP+  L+SP F       L SP  GA    +T+Q+ + +         +         S
Sbjct: 64  FSPSLFLDSPAFVSSSANVLASPTTGALITNVTNQKGINEGDKSNNNNFNLFDFSFHTQS 123

Query: 189 SLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSD-FSHSDQRP--QSSSY-- 243
           S  SAPTT+ T  ++ T   ++      +      Q K  S+ +S ++ RP  Q+ SY  
Sbjct: 124 SGVSAPTTTTTTTTTTTTTNSS------IFQSQEQQKKNQSEQWSQTETRPNNQAVSYNG 177

Query: 244 VSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQH 303
              +  +D YNWRKYGQK VKGSE PRSYYKCT PNCP KKKVERSL+GQ+TEI+YKG H
Sbjct: 178 REQRKGEDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSH 237

Query: 304 NHPPPQSNKRAK------DAGSLNGNL--NNQGSSEL---ASQLKEGAGYSMSKKDQESS 352
           NHP PQS +R+        +   N +L  N Q SS+     +   +   + M ++D    
Sbjct: 238 NHPKPQSTRRSSSSSSTFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQED---- 293

Query: 353 QVTPENISGTSDSEEVGDAE----TAVFEKDED----EPDAKRRSTEIRVSEPTASH-RT 403
                  + TSDS  VGD E    +++  +DE+    EP+AKR   +   +       +T
Sbjct: 294 -------NTTSDS--VGDDEFEQGSSIVSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKT 344

Query: 404 VTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           V EPRI+VQTTS++D+LDDGYRWRKYGQKVVKGNP PRSY
Sbjct: 345 VREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSY 384

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WU7|WRK58_ARATH Probable WRKY transcription factor 58 OS=Arabidopsis thaliana GN=WRKY58 PE=2 SV=2

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 136/236 (57%), Gaps = 46/236 (19%)

Query: 222 SVQMKESSDFSHSDQRPQSSSYVS--------------DKPADDPYNWRKYGQKHVKGSE 267
           +V  ++S D S  DQR ++                   DKPADD YNWRKYGQK +KG E
Sbjct: 125 AVHGRQSLDVSQVDQRARNHYNNPGNNNNNRSYNVVNVDKPADDGYNWRKYGQKPIKGCE 184

Query: 268 FPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQ 327
           +PRSYYKCTH NCPVKKKVERS DGQ+T+IIYKGQH+H  PQ               N +
Sbjct: 185 YPRSYYKCTHVNCPVKKKVERSSDGQITQIIYKGQHDHERPQ---------------NRR 229

Query: 328 GSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKR 387
           G     S    GAG  M   D              S   +  D +    E DED P +K 
Sbjct: 230 GGGGRDSTEVGGAGQMMESSDD-------------SGYRKDHDDDDDDDEDDEDLPASKI 276

Query: 388 RSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           R    R+   + +HRTVTEP+IIVQT SEVDLLDDGYRWRKYGQKVVKGNP+PRSY
Sbjct: 277 R----RIDGVSTTHRTVTEPKIIVQTKSEVDLLDDGYRWRKYGQKVVKGNPHPRSY 328

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG77|WRKY2_ARATH Probable WRKY transcription factor 2 OS=Arabidopsis thaliana GN=WRKY2 PE=2 SV=1

 Score =  191 bits (486), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 146/402 (36%), Positives = 191/402 (47%), Gaps = 88/402 (21%)

Query: 128 PPIFAVPPGLSPATLLESPNF-----GLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQI 182
           P +    PGLSPATLLESP F        SP  G F          ++++ A+ +    I
Sbjct: 110 PCLTISSPGLSPATLLESPVFLSNPLAQPSPTTGKFPFLPGVNGNALSSEKAKDEFFDDI 169

Query: 183 PAEY---PSSLSSAP----TTSMTQVSSLTAN--TTTNQQMTPLMPDS-SVQMKESSDFS 232
            A +   P S SS+     TT M  V     N  ++++Q    + P S +++        
Sbjct: 170 GASFSFHPVSRSSSSFFQGTTEMMSVDYGNYNNRSSSHQSAEEVKPGSENIESSNLYGIE 229

Query: 233 HSDQRPQSS--------------------------SYVSDKPADDPYNWRKYGQKHVKGS 266
             +Q  Q+                           S     PA+D YNWRKYGQK VKGS
Sbjct: 230 TDNQNGQNKTSDVTTNTSLETVDHQEEEEEQRRGDSMAGGAPAEDGYNWRKYGQKLVKGS 289

Query: 267 EFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRA------------ 314
           E+PRSYYKCT+PNC VKKKVERS +G +TEIIYKG HNH  P  N+R+            
Sbjct: 290 EYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKGAHNHLKPPPNRRSGMQVDGTEQVEQ 349

Query: 315 ----KDAGSLNGNLNN---QGSSELASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEE 367
               +D+ +   + NN   QG S   + ++EG+          S Q        + D   
Sbjct: 350 QQQQRDSAATWVSCNNTQQQGGSN-ENNVEEGSTRFEYGNQSGSIQAQTGGQYESGDPVV 408

Query: 368 VGDAETAVFEKDEDEPD--------------------------AKRRSTEIRVSEPTASH 401
           V DA ++ F  DEDE D                          +KRR  E   +E + S 
Sbjct: 409 VVDA-SSTFSNDEDEDDRGTHGSVSLGYDGGGGGGGGEGDESESKRRKLEAFAAEMSGST 467

Query: 402 RTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           R + EPR++VQTTS+VD+LDDGYRWRKYGQKVVKGNP PRSY
Sbjct: 468 RAIREPRVVVQTTSDVDILDDGYRWRKYGQKVVKGNPNPRSY 509

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T3|WRK26_ARATH Probable WRKY transcription factor 26 OS=Arabidopsis thaliana GN=WRKY26 PE=2 SV=2

 Score =  173 bits (438), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 121/322 (37%), Positives = 150/322 (46%), Gaps = 103/322 (31%)

Query: 131 FAVPPGLSPATLLESPNFG-----LFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAE 185
           F +PPGL+PA  L+SP        L SP  G F                        PA+
Sbjct: 29  FTMPPGLTPADFLDSPLLFTSSNILPSPTTGTF------------------------PAQ 64

Query: 186 YPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLM---PDSSVQMKESSDFSHSDQRPQSSS 242
              SL+      +   + +    TT     P M   P   + + +S   S          
Sbjct: 65  ---SLNYNNNGLLIDKNEIKYEDTTPPLFLPSMVTQPLPQLDLFKSEIMS---------- 111

Query: 243 YVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKG 301
             S+K +DD YNWRKYGQK VKGSE PRSY+KCT+PNC  KKKVE SL  GQ+ EI+YKG
Sbjct: 112 --SNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKG 169

Query: 302 QHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMSKKDQESSQVTPENISG 361
            HNHP PQS KR+                                    S+ +     S 
Sbjct: 170 SHNHPKPQSTKRS-----------------------------------SSTAIAAHQNSS 194

Query: 362 TSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLD 421
             D +++G          EDE +AKR   E            V EPR++VQTTS++D+LD
Sbjct: 195 NGDGKDIG----------EDETEAKRWKRE----------ENVKEPRVVVQTTSDIDILD 234

Query: 422 DGYRWRKYGQKVVKGNPYPRSY 443
           DGYRWRKYGQKVVKGNP PRSY
Sbjct: 235 DGYRWRKYGQKVVKGNPNPRSY 256

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU0|WRK44_ARATH WRKY transcription factor 44 OS=Arabidopsis thaliana GN=WRKY44 PE=1 SV=2

 Score =  160 bits (404), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/232 (42%), Positives = 128/232 (55%), Gaps = 41/232 (17%)

Query: 239 QSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEII 298
           +S +   D+ + D YNWRKYGQK VKGSE PRSYYKCTHP CPVKKKVERS++GQV+EI+
Sbjct: 154 ESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIV 213

Query: 299 YKGQHNHPPPQS--NKRAKDA---------------GSLNGNLNNQGSSELASQLKEGAG 341
           Y+G+HNH  P     +RA  +               GS+  + NN   S L +     + 
Sbjct: 214 YQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSNDST 273

Query: 342 YSMSKKDQESSQVTPENIS---------GTSDSEEVGDAETAVFEKDEDEPD-AKRRSTE 391
            + ++K  E   +TP   +         GTSDS   G   +   E + D+P  +KRR  E
Sbjct: 274 QNRTEKMSEGCVITPFEFAVPRSTNSNPGTSDS---GCKSSQCDEGELDDPSRSKRRKNE 330

Query: 392 IRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
            + SE   S  +V           E D L+DG+RWRKYGQKVV GN YPRSY
Sbjct: 331 KQSSEAGVSQGSV-----------ESDSLEDGFRWRKYGQKVVGGNAYPRSY 371

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates trichome development, production of mucilage and tannin in seed coats, and maybe root hair development.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
409923424	531	WRKY transcription factor 2-4 [Dimocarpu	0.964	0.817	0.716	1e-160
225469228	534	PREDICTED: LOW QUALITY PROTEIN: probable	0.906	0.764	0.659	1e-139
48686707	536	DNA binding protein WRKY2 [Vitis vinifer	0.906	0.761	0.654	1e-138
147845061	452	hypothetical protein VITISV_027325 [Viti	0.913	0.909	0.652	1e-138
297844302	510	WRKY DNA-binding protein 4 [Arabidopsis	0.922	0.813	0.593	1e-131
255542140	468	WRKY transcription factor, putative [Ric	0.835	0.803	0.677	1e-130
224108942	499	predicted protein [Populus trichocarpa]	0.86	0.775	0.651	1e-128
4322940	528	DNA-binding protein 2 [Nicotiana tabacum	0.904	0.770	0.607	1e-127
15223004	514	putative WRKY transcription factor 4 [Ar	0.922	0.807	0.590	1e-126
183979104	529	DNA-binding protein [Vitis thunbergii]	0.902	0.767	0.588	1e-124

>gi|409923424|gb|AEO31507.2| WRKY transcription factor 2-4 [Dimocarpus longan]

 Score =  571 bits (1471), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 328/458 (71%), Positives = 365/458 (79%), Gaps = 24/458 (5%)

Query: 1   MAGNEDRASTASSASLKPSTT-PSRPTITLPPRASFTESLFNNNGPGS----GFGFGFSP 55
           MA NE+R S  S    KP+T  P RPTIT PPRA+F E LFNN G G+    G G GFSP
Sbjct: 1   MAENEERPSAPS----KPTTAQPRRPTITPPPRAAFAEGLFNN-GSGTVSSTGLGMGFSP 55

Query: 56  GPMTLVSNFFADSDDCKSFSQLLAGAMSSPA--AGHLRPNFSEQ-AERGSGD-AEAGDAD 111
           GPMTLVS+FFA+S+DCKSFSQLLAGAM+SPA  AGH+ PNF EQ  E  SGD A  G+ D
Sbjct: 56  GPMTLVSSFFAESEDCKSFSQLLAGAMASPASAAGHMGPNFLEQQVEISSGDDAVVGEGD 115

Query: 112 FRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTA 171
           FRFKQ+RPAGLVIAQ  PIF+VPPGLSPATLLESP+ G+ SPAQG FGMTHQQALAQVTA
Sbjct: 116 FRFKQSRPAGLVIAQQQPIFSVPPGLSPATLLESPSLGMLSPAQGPFGMTHQQALAQVTA 175

Query: 172 QAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDF 231
           QAAQAQSH QI A++ SS SSAP         L  +T T+  ++  +    +  +E+SDF
Sbjct: 176 QAAQAQSHIQIQADHVSSFSSAPGNIYGTNVVLYYHTATDATLSDRL---QIGDEENSDF 232

Query: 232 SHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLD 291
           SHS+QR Q SSY  DKPADD YNWRKYGQK VKGSEFPRSYYKCTHP CPVKKKVERSLD
Sbjct: 233 SHSNQRSQPSSYTVDKPADDSYNWRKYGQKQVKGSEFPRSYYKCTHPGCPVKKKVERSLD 292

Query: 292 GQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEG------AGYSMS 345
           GQVTEIIY+GQHNH PP +N+R KD GSLNG+ NNQGSSELASQ + G       G+SMS
Sbjct: 293 GQVTEIIYRGQHNHRPP-TNRRGKDTGSLNGSSNNQGSSELASQFQSGNLNKSKEGHSMS 351

Query: 346 KKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVT 405
           KKDQESSQVTPEN+SGTSDSEEV DAE A+  KDEDEPD KR++TE+RVSE  +SHRTVT
Sbjct: 352 KKDQESSQVTPENLSGTSDSEEVDDAEIAMDAKDEDEPDPKRQNTEVRVSEAASSHRTVT 411

Query: 406 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 412 EPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 449

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469228|ref|XP_002264243.1| PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 3 [Vitis vinifera]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 292/443 (65%), Positives = 331/443 (74%), Gaps = 35/443 (7%)

Query: 22  PSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSD---DCKSFSQLL 78
           P RPTITLPPR+S  E+LF      S          MTLVSNFF+D+D   DC+SFSQLL
Sbjct: 21  PLRPTITLPPRSSM-ETLFPGGPGFSPGP-------MTLVSNFFSDNDPDSDCRSFSQLL 72

Query: 79  AGAMSSPAA-GHLRPNFS--------EQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPP 129
           AGAM+SPAA    RP+FS         + +R S DA AGD +FRFKQNRP+GLVIAQ P 
Sbjct: 73  AGAMASPAAFPGPRPSFSTDPQVSASSKEDRTSVDA-AGDFEFRFKQNRPSGLVIAQSP- 130

Query: 130 IFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSS 189
           +F VPPGLSP  LL+SP  G FS  QG F M+HQQALAQVTAQAAQA SH Q+ A++PSS
Sbjct: 131 LFTVPPGLSPTCLLDSP--GFFS--QGPFVMSHQQALAQVTAQAAQAHSHMQLQAKFPSS 186

Query: 190 LSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPA 249
           LS AP  S+TQ  S  +NT  ++QM PL+ D+   +KESS  S SDQR Q SS+  DKPA
Sbjct: 187 LSVAPAASLTQFPSFASNTKAHEQMPPLVSDTRTAVKESSGLSQSDQRSQPSSFTVDKPA 246

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQ 309
           DD YNWRKYGQK VKGSE+PRSYYKCTHP+CPVKKKVERSLDGQVTEIIYKGQHNH  P 
Sbjct: 247 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGQVTEIIYKGQHNHQAPL 306

Query: 310 SNKRAKDAGSLNGNLNNQGSSELASQLKEG---------AGYSMSKKDQESSQVTPENIS 360
            NKRAKD G+ NGN N Q + ELASQ + G           YS+SKKDQESSQ  PE++ 
Sbjct: 307 PNKRAKDTGNPNGNSNFQENPELASQNQTGNLNKPKEGLPAYSLSKKDQESSQAIPEHLP 366

Query: 361 GTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLL 420
           G+SDSEE+ DAET   EK EDEPD KRR+TE+RVS+  +SHRTVTEPRIIVQTTSEVDLL
Sbjct: 367 GSSDSEEMDDAETRGDEKGEDEPDPKRRNTEVRVSDQVSSHRTVTEPRIIVQTTSEVDLL 426

Query: 421 DDGYRWRKYGQKVVKGNPYPRSY 443
           DDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 427 DDGYRWRKYGQKVVKGNPYPRSY 449

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|48686707|gb|AAT46067.1| DNA binding protein WRKY2 [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 290/443 (65%), Positives = 330/443 (74%), Gaps = 35/443 (7%)

Query: 22  PSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDD---CKSFSQLL 78
           P RPTITLPPR+S  E+LF      S          MTLVSNFF+D+D    C+SFSQLL
Sbjct: 23  PLRPTITLPPRSSM-ETLFPGGPGFSPGP-------MTLVSNFFSDNDPDSYCRSFSQLL 74

Query: 79  AGAMSSPAAG-HLRPNFS--------EQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPP 129
           AGAM+SPAA    RP+FS         + +R S DA AGD +FRFKQNRP+GLVIAQ P 
Sbjct: 75  AGAMASPAAVPGPRPSFSTDPQVSASSKEDRTSVDA-AGDFEFRFKQNRPSGLVIAQSP- 132

Query: 130 IFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSS 189
           +F VPPGLSP  LL+SP  G FS  QG F M+HQQALAQVTAQAAQA SH Q+ AE+PSS
Sbjct: 133 LFTVPPGLSPTCLLDSP--GFFS--QGPFVMSHQQALAQVTAQAAQAHSHMQLQAEFPSS 188

Query: 190 LSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPA 249
           LS +P  S+TQ  S  +NT  ++QM PL+ D+   +KESS  S SDQR Q SS+  DKPA
Sbjct: 189 LSVSPAASLTQFPSFASNTKAHEQMPPLVSDARTAVKESSGLSQSDQRSQPSSFTVDKPA 248

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQ 309
           DD YNWRKYGQK VKGSE+PRSYYKCTHP+CPVKKKVERSLDGQVTEIIYKGQHNH  P 
Sbjct: 249 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGQVTEIIYKGQHNHQAPL 308

Query: 310 SNKRAKDAGSLNGNLNNQGSSELASQLKEG---------AGYSMSKKDQESSQVTPENIS 360
            NKRAKD G+ NGN N Q + ELASQ + G           YS+SKKDQ+SSQ  PE++ 
Sbjct: 309 PNKRAKDTGNPNGNSNFQENPELASQNQTGNLNKPKEGLPAYSLSKKDQQSSQAIPEHLP 368

Query: 361 GTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLL 420
           G+SDSEE+ DAET   EK EDEPD KRR+TE+RVS+  +SHRTVTEPRIIVQTTSEVDLL
Sbjct: 369 GSSDSEEMDDAETRGDEKGEDEPDPKRRNTEVRVSDQVSSHRTVTEPRIIVQTTSEVDLL 428

Query: 421 DDGYRWRKYGQKVVKGNPYPRSY 443
           DDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 429 DDGYRWRKYGQKVVKGNPYPRSY 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845061|emb|CAN80574.1| hypothetical protein VITISV_027325 [Vitis vinifera]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 291/446 (65%), Positives = 330/446 (73%), Gaps = 35/446 (7%)

Query: 22  PSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSD---DCKSFSQLL 78
           P RPTITLPPR+S  E+LF      S           TLVSNFF+D+D   DC+SFSQLL
Sbjct: 21  PLRPTITLPPRSSM-ETLFPGGPGFSPGP-------XTLVSNFFSDNDPDSDCRSFSQLL 72

Query: 79  AGAMSSPAAG-HLRPNFS--------EQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPP 129
           AGAM+SPAA    RP+FS         + +R S DA AGD +FRFKQNRP+GLVIAQ P 
Sbjct: 73  AGAMASPAAVPGPRPSFSTDPQVSASSKEDRTSVDA-AGDFEFRFKQNRPSGLVIAQSP- 130

Query: 130 IFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSS 189
           +F VPPGLSP  LL+SP  G FS  QG F M+HQQALAQVTAQAAQA SH Q+ AE+PSS
Sbjct: 131 LFTVPPGLSPTCLLDSP--GFFS--QGPFVMSHQQALAQVTAQAAQAHSHMQLQAEFPSS 186

Query: 190 LSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPA 249
           LS AP  S+TQ  S  +NT  ++QM PL+ D+   +KESS  S SDQR Q SS+  DKP 
Sbjct: 187 LSVAPAASLTQFPSFASNTKAHEQMPPLVSDTRTAVKESSGLSQSDQRSQPSSFTVDKPX 246

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQ 309
           DD YNWRKYGQK VKGSE+PRSYYKCTHP+CPVKKKVERSLDGQVTEIIYKGQHNH  P 
Sbjct: 247 DDGYNWRKYGQKQVKGSEYPRSYYKCTHPSCPVKKKVERSLDGQVTEIIYKGQHNHQAPL 306

Query: 310 SNKRAKDAGSLNGNLNNQGSSELASQLKEG---------AGYSMSKKDQESSQVTPENIS 360
            NKRAKD G+ NGN N Q + ELASQ + G           YS+SKKDQZSSQ  PE++ 
Sbjct: 307 PNKRAKDTGNPNGNSNFQENPELASQNQTGNLNKPKEGLPAYSLSKKDQZSSQAIPEHLP 366

Query: 361 GTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLL 420
           G+SDSEE+ DAET   EK EDEPD KRR+TE+RVS+  +SHRTVTEPRIIVQTTSEVDLL
Sbjct: 367 GSSDSEEMDDAETRGDEKGEDEPDPKRRNTEVRVSDQVSSHRTVTEPRIIVQTTSEVDLL 426

Query: 421 DDGYRWRKYGQKVVKGNPYPRSYIFS 446
           DDGYRWRKYGQKVVKGNPYPR  IFS
Sbjct: 427 DDGYRWRKYGQKVVKGNPYPRWSIFS 452

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844302|ref|XP_002890032.1| WRKY DNA-binding protein 4 [Arabidopsis lyrata subsp. lyrata] gi|297335874|gb|EFH66291.1| WRKY DNA-binding protein 4 [Arabidopsis lyrata subsp. lyrata]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/455 (59%), Positives = 313/455 (68%), Gaps = 40/455 (8%)

Query: 1   MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTL 60
           M+  E+  ST+ SA       PSRPT++LPPR  F+E  FN        G GFSPGPMTL
Sbjct: 1   MSEKEEAPSTSKSAG-----APSRPTLSLPPRP-FSEMFFNG-------GVGFSPGPMTL 47

Query: 61  VSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPA 120
           VSN F DSD+ +SFSQLLAGAM+SPA          Q      ++ +GD D RFKQNRP 
Sbjct: 48  VSNMFPDSDEFRSFSQLLAGAMTSPATATAATASDYQRISEGTNSSSGDVDPRFKQNRPT 107

Query: 121 GLVIAQP--PPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHQQALAQVTAQAAQAQ 177
           GL+I+Q   P +F VPPGLSPA L++SP+F GLFSP QGA+GMTHQQALAQVTAQA QA 
Sbjct: 108 GLMISQSQSPSMFTVPPGLSPAMLMDSPSFLGLFSPVQGAYGMTHQQALAQVTAQAVQAN 167

Query: 178 SHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQR 237
           ++ Q   EYP S         +QV S ++         PL        +E+SD +  + R
Sbjct: 168 ANMQPQTEYPPS---------SQVQSFSSGQAQIPTSAPL-----PAQRETSDVTIIEHR 213

Query: 238 PQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEI 297
            Q    V DKPADD YNWRKYGQK VKGSEFPRSYYKCT+P CPVKKKVERSLDGQVTEI
Sbjct: 214 SQQPLNV-DKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEI 272

Query: 298 IYKGQHNHPPPQSNKRAK--DAGSLNGNL--NNQGSSEL-ASQLKEGAGYSMSKKDQE-- 350
           IYKGQHNH PPQ+ KR    +  +LNG+   NN+GSSEL  SQ +  +     ++  E  
Sbjct: 273 IYKGQHNHEPPQNTKRGNKDNTANLNGSSVNNNRGSSELGVSQFQTNSSNKTKREQHEAA 332

Query: 351 SSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSE--PTASHRTVTEPR 408
           S   T E++S  SDSEEVG+ ET V EKDE+EPD KRRSTE+RVSE  P ASHRTVTEPR
Sbjct: 333 SQATTTEHLSEASDSEEVGNGETDVREKDENEPDPKRRSTEVRVSEPAPAASHRTVTEPR 392

Query: 409 IIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           IIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 393 IIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 427

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542140|ref|XP_002512134.1| WRKY transcription factor, putative [Ricinus communis] gi|223549314|gb|EEF50803.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/397 (67%), Positives = 300/397 (75%), Gaps = 21/397 (5%)

Query: 48  GFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNFSEQAERGSGDAEA 107
           G G GFSPGPMTLVS+FF+DSDD KSFSQLLAGAM+SPAA    P    Q ++ S     
Sbjct: 2   GLGLGFSPGPMTLVSSFFSDSDDFKSFSQLLAGAMASPAAVKAPPFPPAQEDKISAIGVT 61

Query: 108 GDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHQQALA 167
                      PA L I  PPP F      SP  LL+SP FG FSP QG FGMTHQQALA
Sbjct: 62  ---------RTPANLSIVPPPPTF------SPVALLDSPGFGFFSP-QGPFGMTHQQALA 105

Query: 168 QVTAQAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKE 227
           QVTAQAA+A SH  I A+Y    SSAP TS TQ SS++ N+T +QQM   +PD++   KE
Sbjct: 106 QVTAQAAEANSHIHIQAQY----SSAPATSSTQFSSISTNSTIHQQMPSSIPDTNASEKE 161

Query: 228 SSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVE 287
            SDFS  DQR Q+SS   DKPADD YNWRKYGQK VKGSEFPRSYYKCTHP+CPVKKKVE
Sbjct: 162 LSDFSFPDQRAQASSVTVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVE 221

Query: 288 RSLDGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLNNQGSSELASQLKEGAGYSMS-K 346
           RSLDGQVTEIIYKGQHNH PP  NKR KDAG++NGN NNQ  S LASQ + G    +  +
Sbjct: 222 RSLDGQVTEIIYKGQHNHHPPLPNKRGKDAGNMNGNQNNQTDSGLASQFQIGNVNKLKDR 281

Query: 347 KDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTE 406
           KDQESSQ  PE++SGTSDSEEVGD ET + E DEDEP+AKRR+TE+RV+EP +SHRTVTE
Sbjct: 282 KDQESSQAMPEHLSGTSDSEEVGDTETGIDENDEDEPEAKRRNTEVRVTEPVSSHRTVTE 341

Query: 407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           PRIIVQTTSEVDLLDDGYRWRKYGQK+VKGNPYPRSY
Sbjct: 342 PRIIVQTTSEVDLLDDGYRWRKYGQKIVKGNPYPRSY 378

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108942|ref|XP_002315024.1| predicted protein [Populus trichocarpa] gi|222864064|gb|EEF01195.1| predicted protein [Populus trichocarpa]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 273/419 (65%), Positives = 310/419 (73%), Gaps = 32/419 (7%)

Query: 26  TITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADSDDCKSFSQLLAGAMSSP 85
           TITLPPR SFTE+ F++  PG+    GFSPGPMTL+S+FF+DSDDCKSFSQLLAGA++SP
Sbjct: 29  TITLPPR-SFTETFFSSGAPGT---LGFSPGPMTLLSSFFSDSDDCKSFSQLLAGAIASP 84

Query: 86  AAGHLRPNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAVPPGLSPATLLES 145
              + +P                D       +  + L I  PPP+F++P GLSP +L +S
Sbjct: 85  ---NFKP--------------PDDKSSAGDFSSSSSLSIVPPPPMFSMPLGLSPVSLPDS 127

Query: 146 PNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLT 205
           P FGLFSP QG FGMTHQQALAQVTAQAAQA S   +  EY     S P  S T  S+  
Sbjct: 128 PGFGLFSP-QG-FGMTHQQALAQVTAQAAQANSIMHVQPEY-----STPAMSSTFTSTQG 180

Query: 206 ANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKG 265
           A+    QQ    + DS V+++E SDFS SDQR +SSS   DKPA+D YNWRKYGQK VKG
Sbjct: 181 AHQ--QQQKVRSVADSRVKIQELSDFSRSDQRSESSSLAVDKPANDGYNWRKYGQKQVKG 238

Query: 266 SEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAGSLNGNLN 325
           SE+PRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNH PPQSNKR KD G LNGN N
Sbjct: 239 SEYPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHQPPQSNKRGKDTGGLNGNSN 298

Query: 326 NQGSSELASQLKEG-AGYSMSKKDQESSQVTPENISGTSDSEEVGDAETAVFEKDEDEPD 384
           + G+SEL S+ + G       +KDQESSQ TPE+ISG SDSEEVGD E A  E DEDEPD
Sbjct: 299 SHGNSELDSRFQSGNVSKERDRKDQESSQATPEHISGMSDSEEVGDTE-AGGEVDEDEPD 357

Query: 385 AKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
            KRRSTE+RV+EP +SHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 358 PKRRSTEVRVTEPASSHRTVTEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 416

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4322940|gb|AAD16139.1| DNA-binding protein 2 [Nicotiana tabacum]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 268/441 (60%), Positives = 313/441 (70%), Gaps = 34/441 (7%)

Query: 22  PSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFAD-SDDCKSFSQLLAG 80
           P RPTITLPPRAS  E+LF     G   G       MTLVS+FF+D + +  SFSQLLAG
Sbjct: 12  PMRPTITLPPRAS-VENLFMGGPGGISPGP------MTLVSSFFSDPASEYPSFSQLLAG 64

Query: 81  AMSSPAA--GHLR-----PNFSEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAV 133
           AM+SPAA  G  +     P  +    +G  ++ +GD DF FKQNRP+GLVI Q P +F +
Sbjct: 65  AMASPAAFSGQRQGFPPPPEMTVSISKGK-ESGSGDMDFGFKQNRPSGLVITQSP-MFTI 122

Query: 134 PPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEYPSSLSSA 193
           P GLSPA LL SP   LFSP QG FGM+HQQALAQVTAQAA  QS   I  +YPSS ++ 
Sbjct: 123 PAGLSPARLLGSP--LLFSPGQGPFGMSHQQALAQVTAQAAHPQSQMHIQPDYPSSSAAP 180

Query: 194 PTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPY 253
              S +Q  SLT+N T N+Q+ P   D +V MKE+S+ S SDQR + +S   DKPADD Y
Sbjct: 181 -APSFSQFQSLTSNATANKQIPPPASDPNV-MKEASEVSLSDQRSEPASSAVDKPADDGY 238

Query: 254 NWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKR 313
           NWRKYGQKHVKGSE+PRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNH PPQS+KR
Sbjct: 239 NWRKYGQKHVKGSEYPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHQPPQSSKR 298

Query: 314 AKDAGSLNGNLNNQGSSELASQLKEGA---------GYSMSKKDQESSQVTPENISGTSD 364
           +K++G+ NGN N QG SEL+S+   G           YS+   DQESSQ T + +SGTS+
Sbjct: 299 SKESGNPNGNYNLQGPSELSSEGVAGTLNNSKDSMPSYSLRMTDQESSQATHDQVSGTSE 358

Query: 365 SEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEP--TASHRTVTEPRIIVQTTSEVDLLDD 422
            EEVGD E      DE E  +KRR+ E++ SE   +ASHR V EPRIIVQTTSEVDLLDD
Sbjct: 359 GEEVGDTENLADGNDERE--SKRRAIEVQTSEAASSASHRAVAEPRIIVQTTSEVDLLDD 416

Query: 423 GYRWRKYGQKVVKGNPYPRSY 443
           GYRWRKYGQKVVKGNPYPRSY
Sbjct: 417 GYRWRKYGQKVVKGNPYPRSY 437

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223004|ref|NP_172849.1| putative WRKY transcription factor 4 [Arabidopsis thaliana] gi|20978796|sp|Q9XI90.2|WRKY4_ARATH RecName: Full=Probable WRKY transcription factor 4; AltName: Full=WRKY DNA-binding protein 4 gi|15991742|gb|AAL13048.1|AF425835_1 WRKY transcription factor 4 [Arabidopsis thaliana] gi|15010750|gb|AAK74034.1| At1g13960/F7A19_5 [Arabidopsis thaliana] gi|27363252|gb|AAO11545.1| At1g13960/F7A19_5 [Arabidopsis thaliana] gi|332190968|gb|AEE29089.1| putative WRKY transcription factor 4 [Arabidopsis thaliana]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/459 (59%), Positives = 314/459 (68%), Gaps = 44/459 (9%)

Query: 1   MAGNEDRASTASSASLKPSTTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTL 60
           M+  E+  ST+ S        PSRPT++LPPR  F+E  FN        G GFSPGPMTL
Sbjct: 1   MSEKEEAPSTSKSTG-----APSRPTLSLPPRP-FSEMFFNG-------GVGFSPGPMTL 47

Query: 61  VSNFFADSDDCKSFSQLLAGAMSSPAAGHLRPNF---SEQAERGSG-DAEAGDADFRFKQ 116
           VSN F DSD+ +SFSQLLAGAMSSPA           S+    G G ++ +GD D RFKQ
Sbjct: 48  VSNMFPDSDEFRSFSQLLAGAMSSPATAAAAAAAATASDYQRLGEGTNSSSGDVDPRFKQ 107

Query: 117 NRPAGLVIAQP--PPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHQQALAQVTAQA 173
           NRP GL+I+Q   P +F VPPGLSPA LL+SP+F GLFSP QG++GMTHQQALAQVTAQA
Sbjct: 108 NRPTGLMISQSQSPSMFTVPPGLSPAMLLDSPSFLGLFSPVQGSYGMTHQQALAQVTAQA 167

Query: 174 AQAQSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSH 233
            QA ++ Q   EYP      P + +   SS  A   T+    PL        +E+SD + 
Sbjct: 168 VQANANMQPQTEYP------PPSQVQSFSSGQAQIPTS---APL-----PAQRETSDVTI 213

Query: 234 SDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQ 293
            + R Q    V DKPADD YNWRKYGQK VKGSEFPRSYYKCT+P CPVKKKVERSLDGQ
Sbjct: 214 IEHRSQQPLNV-DKPADDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQ 272

Query: 294 VTEIIYKGQHNHPPPQSNKRA-KD---AGSLNGNLNNQGSSEL-ASQLKEGAGYSMSKKD 348
           VTEIIYKGQHNH PPQ+ KR  KD     + +   NN+GSSEL ASQ +  +     ++ 
Sbjct: 273 VTEIIYKGQHNHEPPQNTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQ 332

Query: 349 QE--SSQVTPENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSE--PTASHRTV 404
            E  S   T E++S  SD EEVG+ ET V EKDE+EPD KRRSTE+R+SE  P ASHRTV
Sbjct: 333 HEAVSQATTTEHLSEASDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTV 392

Query: 405 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 393 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 431

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|183979104|emb|CAP08301.1| DNA-binding protein [Vitis thunbergii]

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 260/442 (58%), Positives = 306/442 (69%), Gaps = 36/442 (8%)

Query: 20  TTPSRPTITLPPRASFTESLFNNNGPGSGFGFGFSPGPMTLVSNFFADS---DDCKSFSQ 76
             PSRPTI LPPR+S     F             SPGPMTLVS+FF+D+    DC+SFSQ
Sbjct: 14  VAPSRPTIALPPRSSMDAFFF----------AATSPGPMTLVSSFFSDNYPDSDCRSFSQ 63

Query: 77  LLAGAMSSPAAGHLRPNF---SEQAERGSGDAEAGDADFRFKQNRPAGLVIAQPPPIFAV 133
           LLAGAM+SP A   RP     +     GSGD  A  +   F+QNRP  L +A+ P +F++
Sbjct: 64  LLAGAMASPGA---RPTLLSGNSTNHEGSGDG-AEKSSLGFRQNRPLSLAVARSP-MFSI 118

Query: 134 PPGLSPATLLESPNFGLFSPAQGAFGMTHQQALAQVTAQAAQAQSHTQIPAEY-PSSLSS 192
           PPGLSP+ LL SP  G FSP Q  FGM+HQQALAQVTAQAA +QSH  I AEY PSSL  
Sbjct: 119 PPGLSPSGLLNSP--GFFSPLQSPFGMSHQQALAQVTAQAALSQSHMFIQAEYQPSSLE- 175

Query: 193 APTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDP 252
           AP  S+ Q  S   + TT+QQ+ PL  D    M ESS+ SHSD++ Q  S V DKP DD 
Sbjct: 176 APVESLAQDPSFITDATTHQQVPPLPSDPKSSMMESSEVSHSDRKSQPPSLVVDKPGDDG 235

Query: 253 YNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNK 312
           YNWRKYGQK VKGSE+PRSYYKCTH NCPVKKKVERS DGQ+TEIIYKGQHNH  P+ NK
Sbjct: 236 YNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSHDGQITEIIYKGQHNHEVPKPNK 295

Query: 313 RAKDAGSLNGNLNNQGSSELASQLKEGA---------GYSMSKKDQESSQVTPENISGTS 363
           RAKD   LNG+ N+Q   EL SQ + G+           S+   DQE++Q  P  ++G+S
Sbjct: 296 RAKDGNDLNGHANSQSKPELGSQGQMGSLNRPNETVPANSVPGMDQETTQAMPLQVNGSS 355

Query: 364 DSEEVGDAETAV-FEKDEDEPDAKRRSTEIRV-SEPTASHRTVTEPRIIVQTTSEVDLLD 421
           DSEEVGDAET V  + D+DEP+ KRR+TE+   +E  +SH+TVTEPRIIVQT SEVDLLD
Sbjct: 356 DSEEVGDAETRVKEDDDDDEPNPKRRNTEVAAPAEVVSSHKTVTEPRIIVQTRSEVDLLD 415

Query: 422 DGYRWRKYGQKVVKGNPYPRSY 443
           DGYRWRKYGQKVVKGNP+PRSY
Sbjct: 416 DGYRWRKYGQKVVKGNPHPRSY 437

Source: Vitis thunbergii

Species: Vitis thunbergii

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	450
TAIR|locus:2063835	513	WRKY3 "WRKY DNA-binding protei	0.911	0.799	0.546	2.1e-109
TAIR|locus:2014799	514	WRKY4 "WRKY DNA-binding protei	0.897	0.785	0.544	2.5e-106
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.533	0.126	0.492	1e-60
TAIR|locus:2133852	557	WRKY20 [Arabidopsis thaliana (	0.548	0.443	0.467	1.8e-60
TAIR|locus:2057212	519	WRKY33 "AT2G38470" [Arabidopsi	0.757	0.657	0.394	9.6e-57
TAIR|locus:2177596	687	WRKY2 "WRKY DNA-binding protei	0.291	0.190	0.458	1.3e-52
TAIR|locus:2169354	309	WRKY26 "WRKY DNA-binding prote	0.155	0.226	0.718	2.2e-51
TAIR|locus:2131503	568	WRKY34 "WRKY DNA-binding prote	0.246	0.195	0.486	4e-48
TAIR|locus:2060805	393	WRKY25 "WRKY DNA-binding prote	0.673	0.770	0.335	2.8e-41
TAIR|locus:2049852	429	TTG2 "TRANSPARENT TESTA GLABRA	0.455	0.477	0.403	7.2e-36

TAIR|locus:2063835 WRKY3 "WRKY DNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1081 (385.6 bits), Expect = 2.1e-109, P = 2.1e-109
 Identities = 245/448 (54%), Positives = 287/448 (64%)

Query:    14 ASLKPSTTPSRPTITLPPRASFTESLXXXXXXXXXXXXXXXXXXMTLVSNFFADSDDCKS 73
             + LK ST  SRPTI+LPPR  F E                    MTLVSN F+D D+ KS
Sbjct:    10 SKLKSSTGVSRPTISLPPRP-FGEMFFSGGVGFSPGP-------MTLVSNLFSDPDEFKS 61

Query:    74 FSQLLAGAMSSPAAGHLRP--------NFSEQAERGSGDAEAGDADFRFKQNRPAGLVIA 125
             FSQLLAGAM+SPAA  +          + +  +  G G    GD D RFKQ+RP GL+I 
Sbjct:    62 FSQLLAGAMASPAAAAVAAAAVVATAHHQTPVSSVGDGGGSGGDVDPRFKQSRPTGLMIT 121

Query:   126 QPPPIFAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHXXXXXXXXXXXXXXXS-HTQIP 183
             QPP +F VPPGLSPATLL+SP+F GLFSP QG FGMTH               + H Q  
Sbjct:   122 QPPGMFTVPPGLSPATLLDSPSFFGLFSPLQGTFGMTHQQALAQVTAQAVQGNNVHMQQS 181

Query:   184 --AEYPSSLSSAPT----TSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQR 237
               +EYPSS           S+T++ S ++      Q+   + ++S   +E+S+ S  + R
Sbjct:   182 QQSEYPSSTQQQQQQQQQASLTEIPSFSS--APRSQIRASVQETSQGQRETSEISVFEHR 239

Query:   238 PQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEI 297
              Q  +  +DKPADD YNWRKYGQK VKGS+FPRSYYKCTHP CPVKKKVERSLDGQVTEI
Sbjct:   240 SQPQN--ADKPADDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSLDGQVTEI 297

Query:   298 IYKGQHNHPPPQSNKRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSKKDQESSQVTP- 356
             IYKGQHNH  PQ  KR  +                 S L +      SK+DQE+SQVT  
Sbjct:   298 IYKGQHNHELPQ--KRGNNNGSCKSSDIANQFQTSNSSLNK------SKRDQETSQVTTT 349

Query:   357 ENISGTSDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTAS-HRTVTEPRIIVQTTS 415
             E +S  SDSEEVG+AET+V E+ EDEPD KRR+TE+RVSEP AS HRTVTEPRIIVQTTS
Sbjct:   350 EQMSEASDSEEVGNAETSVGERHEDEPDPKRRNTEVRVSEPVASSHRTVTEPRIIVQTTS 409

Query:   416 EVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
             EVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct:   410 EVDLLDDGYRWRKYGQKVVKGNPYPRSY 437

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2014799 WRKY4 "WRKY DNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 241/443 (54%), Positives = 280/443 (63%)

Query:    17 KPSTTPSRPTITLPPRASFTESLXXXXXXXXXXXXXXXXXXMTLVSNFFADSDDCKSFSQ 76
             K +  PSRPT++LPPR  F+E                    MTLVSN F DSD+ +SFSQ
Sbjct:    12 KSTGAPSRPTLSLPPRP-FSEMFFNGGVGFSPGP-------MTLVSNMFPDSDEFRSFSQ 63

Query:    77 LLAGAMSSPA---AGHLRPNFSEQAERGSG-DAEAGDADFRFKQNRPAGLVIAQP--PPI 130
             LLAGAMSSPA   A       S+    G G ++ +GD D RFKQNRP GL+I+Q   P +
Sbjct:    64 LLAGAMSSPATAAAAAAAATASDYQRLGEGTNSSSGDVDPRFKQNRPTGLMISQSQSPSM 123

Query:   131 FAVPPGLSPATLLESPNF-GLFSPAQGAFGMTHXXXXXXXXXXXXXXXSHTQIPAEYPSS 189
             F VPPGLSPA LL+SP+F GLFSP QG++GMTH               ++ Q   EYP  
Sbjct:   124 FTVPPGLSPAMLLDSPSFLGLFSPVQGSYGMTHQQALAQVTAQAVQANANMQPQTEYP-- 181

Query:   190 LSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPA 249
                 P + +   SS  A   T+    PL P      +E+SD +  + R Q    V DKPA
Sbjct:   182 ----PPSQVQSFSSGQAQIPTS---APL-P----AQRETSDVTIIEHRSQQPLNV-DKPA 228

Query:   250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQ 309
             DD YNWRKYGQK VKGSEFPRSYYKCT+P CPVKKKVERSLDGQVTEIIYKGQHNH PPQ
Sbjct:   229 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPGCPVKKKVERSLDGQVTEIIYKGQHNHEPPQ 288

Query:   310 SNKRA-KDAXXXXXXXXXX----XXXXXASQLKEGAGYSMSKKDQES-SQVTP-ENISGT 362
             + KR  KD                    ASQ +  +     ++  E+ SQ T  E++S  
Sbjct:   289 NTKRGNKDNTANINGSSINNNRGSSELGASQFQTNSSNKTKREQHEAVSQATTTEHLSEA 348

Query:   363 SDSEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPT--ASHRTVTEPRIIVQTTSEVDLL 420
             SD EEVG+ ET V EKDE+EPD KRRSTE+R+SEP   ASHRTVTEPRIIVQTTSEVDLL
Sbjct:   349 SDGEEVGNGETDVREKDENEPDPKRRSTEVRISEPAPAASHRTVTEPRIIVQTTSEVDLL 408

Query:   421 DDGYRWRKYGQKVVKGNPYPRSY 443
             DDGYRWRKYGQKVVKGNPYPRSY
Sbjct:   409 DDGYRWRKYGQKVVKGNPYPRSY 431

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.0e-60, Sum P(2) = 1.0e-60
 Identities = 127/258 (49%), Positives = 163/258 (63%)

Query:   194 PTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSD----FSHSDQRPQSSSYVSDKPA 249
             P T     S++ + ++   Q+    PDSS+  K ++       H  Q+P +     DK  
Sbjct:   412 PQTEYPSSSAVQSFSSGQPQIPTSAPDSSLLAKSNTSGITIIEHMSQQPLNV----DKQV 467

Query:   250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQ 309
             +D YNW+KYGQK VKGS+FP SYYKCT+  CP K+KVERSLDGQV EI+YK +HNH PP 
Sbjct:   468 NDGYNWQKYGQKKVKGSKFPLSYYKCTYLGCPSKRKVERSLDGQVAEIVYKDRHNHEPPN 527

Query:   310 SNKRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSK---KDQESSQV--TPENISGTSD 364
                + KD                +S+L   + +S +K   + QE++ +  T E +S  SD
Sbjct:   528 ---QGKDGSTTYLSGSSTHINCMSSELT-ASQFSSNKTKIEQQEAASLATTIEYMSEASD 583

Query:   365 SEEVGDAETAVFEKDEDEPDAKRRSTEIRVSE-PTASHRTVTEPRIIVQTTSEVDLLDDG 423
             +EE  + ET+  EKDEDEP+ KRR TE++VSE   AS RTV EPR+I QTTSEVD LDDG
Sbjct:   584 NEEDSNGETSEGEKDEDEPEPKRRITEVQVSELADASDRTVREPRVIFQTTSEVDNLDDG 643

Query:   424 YRWRKYGQKVVKGNPYPR 441
             YRWRKYGQKVVKGNPYPR
Sbjct:   644 YRWRKYGQKVVKGNPYPR 661

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2133852 WRKY20 [Arabidopsis thaliana (taxid:3702)]

 Score = 556 (200.8 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 121/259 (46%), Positives = 150/259 (57%)

Query:   187 PSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPD--SSVQMKESSDFSHSDQRPQSSSYV 244
             PSS+S A  +S    S L+   T   QMTP   D  +    +ES   S +D R  + S +
Sbjct:   155 PSSISDAAGSS----SELS-RPTPPCQMTPTSSDIPAGSDQEESIQTSQNDSRGSTPSIL 209

Query:   245 SDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHN 304
                 ADD YNWRKYGQKHVKGSEFPRSYYKCTHPNC VKK  ERS DGQ+T+IIYKG H+
Sbjct:   210 ----ADDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITDIIYKGTHD 265

Query:   305 HPPPQSNKRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSKKDQESSQVTPENISGTSD 364
             HP PQ  +R                       K    Y++S  ++++       IS + D
Sbjct:   266 HPKPQPGRRNSGGMAAQEERLDKYPSSTGRDEKGSGVYNLSNPNEQTGNPEVPPISASDD 325

Query:   365 SEEVGDAETAVFEKDEDEPDAKRRSTEIRVSEPTASHRTVTEPRIIVQTTSEVDLLDDGY 424
               E   +     E D+D+P +KRR  E    E T   + + EPR++VQT SEVD+LDDGY
Sbjct:   326 GGEAAASNRNKDEPDDDDPFSKRRRME-GAMEITPLVKPIREPRVVVQTLSEVDILDDGY 384

Query:   425 RWRKYGQKVVKGNPYPRSY 443
             RWRKYGQKVV+GNP PRSY
Sbjct:   385 RWRKYGQKVVRGNPNPRSY 403

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

TAIR|locus:2057212 WRKY33 "AT2G38470" [Arabidopsis thaliana (taxid:3702)]

 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 147/373 (39%), Positives = 197/373 (52%)

Query:    93 NFSEQAERGSGDAEAGDADF-RFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFG-- 149
             N+S+Q+ R S  +   D +  +F+   P+ + I+  P + +     SP+  L+SP F   
Sbjct:    22 NWSQQSGRTS-TSSLEDLEIPKFRSFAPSSISIS--PSLVSPSTCFSPSLFLDSPAFVSS 78

Query:   150 ----LFSPAQGAF--GMTHXXXXXXXXXXXXXXXSHTQIPAEYPSSLSSAPTTSMTQVSS 203
                 L SP  GA    +T+               +         SS  SAPTT+ T   +
Sbjct:    79 SANVLASPTTGALITNVTNQKGINEGDKSNNNNFNLFDFSFHTQSSGVSAPTTTTT---T 135

Query:   204 LTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRP--QSSSYVS--DKPADDPYNWRKYG 259
              T  TTTN  +         +  +S  +S ++ RP  Q+ SY     +  +D YNWRKYG
Sbjct:   136 TTTTTTTNSSI--FQSQEQQKKNQSEQWSQTETRPNNQAVSYNGREQRKGEDGYNWRKYG 193

Query:   260 QKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRAKDAXX 319
             QK VKGSE PRSYYKCT PNCP KKKVERSL+GQ+TEI+YKG HNHP PQS +R+  +  
Sbjct:   194 QKQVKGSENPRSYYKCTFPNCPTKKKVERSLEGQITEIVYKGSHNHPKPQSTRRSSSSSS 253

Query:   320 XXXXXXXXXXXXXASQLKEGAGYSMSKKDQESSQVTPENISGTSDSEEVGDAE----TAV 375
                            Q       S +   Q  S    +  + TSDS  VGD E    +++
Sbjct:   254 TFHSAVYNASLDHNRQASSDQPNSNNSFHQSDSFGMQQEDNTTSDS--VGDDEFEQGSSI 311

Query:   376 FEKDED----EPDAKRRSTEIRVSEPTAS-HRTVTEPRIIVQTTSEVDLLDDGYRWRKYG 430
               +DE+    EP+AKR   +   +       +TV EPRI+VQTTS++D+LDDGYRWRKYG
Sbjct:   312 VSRDEEDCGSEPEAKRWKGDNETNGGNGGGSKTVREPRIVVQTTSDIDILDDGYRWRKYG 371

Query:   431 QKVVKGNPYPRSY 443
             QKVVKGNP PRSY
Sbjct:   372 QKVVKGNPNPRSY 384

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0010120 "camalexin biosynthetic process" evidence=IMP

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0010508 "positive regulation of autophagy" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

TAIR|locus:2177596 WRKY2 "WRKY DNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.3e-52, Sum P(3) = 1.3e-52
 Identities = 61/133 (45%), Positives = 79/133 (59%)

Query:   184 AEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMK-ESSDFSHSDQRPQ-SS 241
             + + S+    P +   + S+L    T NQ       D +     E+ D    ++  +   
Sbjct:   205 SSHQSAEEVKPGSENIESSNLYGIETDNQNGQNKTSDVTTNTSLETVDHQEEEEEQRRGD 264

Query:   242 SYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKG 301
             S     PA+D YNWRKYGQK VKGSE+PRSYYKCT+PNC VKKKVERS +G +TEIIYKG
Sbjct:   265 SMAGGAPAEDGYNWRKYGQKLVKGSEYPRSYYKCTNPNCQVKKKVERSREGHITEIIYKG 324

Query:   302 QHNHPPPQSNKRA 314
              HNH  P  N+R+
Sbjct:   325 AHNHLKPPPNRRS 337

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009942 "longitudinal axis specification" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

TAIR|locus:2169354 WRKY26 "WRKY DNA-binding protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.2e-51, Sum P(3) = 2.2e-51
 Identities = 51/71 (71%), Positives = 58/71 (81%)

Query:   245 SDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQH 303
             S+K +DD YNWRKYGQK VKGSE PRSY+KCT+PNC  KKKVE SL  GQ+ EI+YKG H
Sbjct:   112 SNKTSDDGYNWRKYGQKQVKGSENPRSYFKCTYPNCLTKKKVETSLVKGQMIEIVYKGSH 171

Query:   304 NHPPPQSNKRA 314
             NHP PQS KR+
Sbjct:   172 NHPKPQSTKRS 182

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

TAIR|locus:2131503 WRKY34 "WRKY DNA-binding protein 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 4.0e-48, Sum P(3) = 4.0e-48
 Identities = 55/113 (48%), Positives = 69/113 (61%)

Query:   202 SSLTANTTTNQQMTPLMPDSSVQMKESSDFSHSDQRPQSSSYVSDKPADDPYNWRKYGQK 261
             +SL   T +   + P   + +++  +S D+          S     PADD YNWRKYGQK
Sbjct:   132 TSLAFQTISGSGLDPT--NIALEPDDSQDYEERQLGGLGDSMACCAPADDGYNWRKYGQK 189

Query:   262 HVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEIIYKGQHNHPPPQSNKRA 314
              VKGSE+PRSYYKCTHPNC  KKKVERS +G + EIIY G H H  P  N+R+
Sbjct:   190 LVKGSEYPRSYYKCTHPNCEAKKKVERSREGHIIEIIYTGDHIHSKPPPNRRS 242

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0009846 "pollen germination" evidence=IMP

TAIR|locus:2060805 WRKY25 "WRKY DNA-binding protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 112/334 (33%), Positives = 170/334 (50%)

Query:   113 RFKQNRPAGLVIAQPPPIFAVPPGLSPATLLESPNFGLFSPAQGAFGMTHXXXXXXXXXX 172
             +FK  +P  L I+Q    F     L    LL S +  L SP  G F +            
Sbjct:    45 KFKTAQPPPLPISQSSHNFTFSDYLDSPLLLSSSH-SLISPTTGTFPLQ---------GF 94

Query:   173 XXXXXSHTQIPAEYPSSLSSAPTTSMTQVSSLTANTTTNQQMTPLMPDSSVQMKESSDFS 232
                  +H+    ++P  L S P+ + + +   T     +++   ++P+       +  F 
Sbjct:    95 NGTTNNHS----DFPWQLQSQPSNASSALQE-TYGVQDHEKKQEMIPNEIATQNNNQSFG 149

Query:   233 HSDQRPQSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDG 292
              ++++ +  +Y+  + ++D Y WRKYGQK VK SE PRSY+KCT+P+C  KK VE + DG
Sbjct:   150 -TERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENPRSYFKCTYPDCVSKKIVETASDG 208

Query:   293 QVTEIIYKGQHNHPPPQSNKRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSKKDQ-ES 351
             Q+TEIIYKG HNHP P+  KR   +                 +L   A       DQ E+
Sbjct:   209 QITEIIYKGGHNHPKPEFTKRPSQSSLPSSVN--------GRRLFNPASVVSEPHDQSEN 260

Query:   352 SQVTPENISGTSDSEEVG-DAETAVFEKDEDEPDAKRRSTEIRVSEPTAS-HRTVTEPRI 409
             S ++ +     SD E+    +E    +++E++P+ KR   E      +    + V EPR+
Sbjct:   261 SSISFDY----SDLEQKSFKSEYGEIDEEEEQPEMKRMKREGEDEGMSIEVSKGVKEPRV 316

Query:   410 IVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
             +VQT S++D+L DG+RWRKYGQKVVKGN  PRSY
Sbjct:   317 VVQTISDIDVLIDGFRWRKYGQKVVKGNTNPRSY 350

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2049852 TTG2 "TRANSPARENT TESTA GLABRA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 88/218 (40%), Positives = 119/218 (54%)

Query:   239 QSSSYVSDKPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSLDGQVTEII 298
             +S +   D+ + D YNWRKYGQK VKGSE PRSYYKCTHP CPVKKKVERS++GQV+EI+
Sbjct:   154 ESETSTGDRSSVDGYNWRKYGQKQVKGSECPRSYYKCTHPKCPVKKKVERSVEGQVSEIV 213

Query:   299 YKGQHNHPPPQSN--KRAKDAXXXXXXXXXXXXXXXASQLKEGAGYSMSKK-DQESSQVT 355
             Y+G+HNH  P     +RA  +                S  ++      S   + +S+  T
Sbjct:   214 YQGEHNHSKPSCPLPRRASSSISSGFQKPPKSIASEGSMGQDPNNNLYSPLWNNQSNDST 273

Query:   356 PENISGTSDSEEVGDAETAVFEKDEDEP---DAKRRSTEI---RVSEPTASHRTVTEPRI 409
                    S+   +   E AV       P   D+  +S++     + +P+ S R   E + 
Sbjct:   274 QNRTEKMSEGCVITPFEFAVPRSTNSNPGTSDSGCKSSQCDEGELDDPSRSKRRKNEKQS 333

Query:   410 ----IVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
                 + Q + E D L+DG+RWRKYGQKVV GN YPRSY
Sbjct:   334 SEAGVSQGSVESDSLEDGFRWRKYGQKVVGGNAYPRSY 371

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010214 "seed coat development" evidence=IMP

GO:0009957 "epidermal cell fate specification" evidence=RCA;IMP

GO:0001708 "cell fate specification" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI90	WRKY4_ARATH	No assigned EC number	0.5904	0.9222	0.8073	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__1511__AT1G13960.1 annotation not avaliable (510 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	450
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	5e-39
smart00774	59	smart00774, WRKY, DNA binding domain	1e-34
smart00774	59	smart00774, WRKY, DNA binding domain	2e-14
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	3e-14

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  134 bits (340), Expect = 5e-39
 Identities = 43/60 (71%), Positives = 48/60 (80%), Gaps = 1/60 (1%)

Query: 249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPP 307
            DD YNWRKYGQK VKGS FPRSYY+CT P CPVKK+VERS  D Q+ EI Y+G+HNHP 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  122 bits (309), Expect = 1e-34
 Identities = 34/58 (58%), Positives = 43/58 (74%), Gaps = 2/58 (3%)

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTH-PNCPVKKKVERSL-DGQVTEIIYKGQHNH 305
           DD Y WRKYGQK +KGS +PRSYY+CT+   CP KK+V+RS  D  V E+ Y+G+H H
Sbjct: 2   DDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 21/24 (87%), Positives = 24/24 (100%)

Query: 420 LDDGYRWRKYGQKVVKGNPYPRSY 443
           LDDGY+WRKYGQKV+KG+PYPRSY
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSY 24

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 20/24 (83%), Positives = 22/24 (91%)

Query: 420 LDDGYRWRKYGQKVVKGNPYPRSY 443
           LDDGY WRKYGQK VKG+P+PRSY
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSY 24

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	450
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.95
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.94
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.73
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.72
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.28
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	86.5

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.95  E-value=5.5e-29  Score=195.52  Aligned_cols=59  Identities=61%  Similarity=1.261  Sum_probs=51.0

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCC
Q 013055          249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPP  307 (450)
Q Consensus       249 ~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~  307 (450)
                      .+|||+|||||||.|+|+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||++
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            479999999999999999999999999999999999999987 88999999999999985

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.94  E-value=4.7e-28  Score=189.86  Aligned_cols=57  Identities=61%  Similarity=1.166  Sum_probs=54.9

Q ss_pred             CCCCccccccCcccCCCCCCCCCcccccC-CCCccccceeecc-CCCEEEEeeCCCCCC
Q 013055          249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTH-PNCPVKKKVERSL-DGQVTEIIYKGQHNH  305 (450)
Q Consensus       249 ~~DGy~WRKYGQK~ikGs~~pRsYYkCt~-~~C~akK~Ver~~-dg~i~~i~Y~G~HnH  305 (450)
                      .+|||+|||||||.|+|+++||+||||++ ++|+|+|+||++. |+++++|+|+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 8999999999986 899999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.73  E-value=3.4e-19  Score=140.22  Aligned_cols=30  Identities=70%  Similarity=1.279  Sum_probs=26.2

Q ss_pred             CCCcchhhhccccccCCCCCCcceeecccc
Q 013055          420 LDDGYRWRKYGQKVVKGNPYPRSYIFSLVV  449 (450)
Q Consensus       420 ldDGyrWRKYGQK~VKGnp~PRSYYrCT~~  449 (450)
                      |||||+|||||||.||||+|||+|||||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~   30 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP   30 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc
Confidence            689999999999999999999999999974

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.72  E-value=1.7e-18  Score=136.08  Aligned_cols=29  Identities=69%  Similarity=1.351  Sum_probs=28.1

Q ss_pred             CCCcchhhhccccccCCCCCCcceeeccc
Q 013055          420 LDDGYRWRKYGQKVVKGNPYPRSYIFSLV  448 (450)
Q Consensus       420 ldDGyrWRKYGQK~VKGnp~PRSYYrCT~  448 (450)
                      ++|||+|||||||.||||+|||+|||||+
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~   29 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTY   29 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccc
Confidence            58999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.28  E-value=0.15  Score=38.29  Aligned_cols=49  Identities=24%  Similarity=0.540  Sum_probs=24.3

Q ss_pred             CCCCCccccccCcccCCCCCCCCCcccccCC---CCccccceeeccCCCEEEEeeCCCCCC
Q 013055          248 PADDPYNWRKYGQKHVKGSEFPRSYYKCTHP---NCPVKKKVERSLDGQVTEIIYKGQHNH  305 (450)
Q Consensus       248 ~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~---~C~akK~Ver~~dg~i~~i~Y~G~HnH  305 (450)
                      ...|||.-+++...      ..+.|++|+..   +|.|+=.+. ..++.+  +...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~-~~~~~~--~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD-AGDGRV--VRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE---TTEE--EE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE-CCCCEE--EECCCccCC
Confidence            34588887665544      33589999975   799976666 223333  455699999

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=86.50  E-value=0.51  Score=38.56  Aligned_cols=30  Identities=30%  Similarity=0.527  Sum_probs=25.6

Q ss_pred             CCCccccceeeccCCCEEEEeeCCCCCCCC
Q 013055          278 PNCPVKKKVERSLDGQVTEIIYKGQHNHPP  307 (450)
Q Consensus       278 ~~C~akK~Ver~~dg~i~~i~Y~G~HnH~~  307 (450)
                      -+|+|+=.|.+..+|....+.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRKDGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEccCCEEEEEECcCCcCCCC
Confidence            379999888887788888888999999986

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	450
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-14
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-14
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		5e-14
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		6e-10

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVER-SLDGQVTEIIYKGQHNHPPP 308
           DD Y WRKYGQK VKG+ +PRSYYKCT P C V+K VER + D +     Y+G+HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)
Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 40

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 249 ADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVER-SLDGQVTEIIYKGQHNHPP 307
            +D Y WRKYGQK VKGS +PRSYY+C+ P CPVKK VER S D ++    Y+G+H+H  
Sbjct: 14  VNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDM 73
Query: 308 P 308
           P
Sbjct: 74  P 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 408 RIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           RI+V T +  D+++DGYRWRKYGQK VKG+PYPRSY
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSY 37
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	450
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	4e-30
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	7e-19
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	5e-30
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	5e-21

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  110 bits (277), Expect = 4e-30
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP 308
           +D Y WRKYGQK VKGS +PRSYY+C+ P CPVKK VERS  D ++    Y+G+H+H  P
Sbjct: 15  NDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score = 79.8 bits (197), Expect = 7e-19
 Identities = 25/36 (69%), Positives = 31/36 (86%)

Query: 408 RIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           RI+V T +  D+++DGYRWRKYGQK VKG+PYPRSY
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSY 37

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  110 bits (277), Expect = 5e-30
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 250 DDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP 308
           DD Y WRKYGQK VKG+ +PRSYYKCT P C V+K VER+  D +     Y+G+HNH  P
Sbjct: 18  DDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP 77

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score = 86.0 bits (213), Expect = 5e-21
 Identities = 33/39 (84%), Positives = 34/39 (87%)

Query: 405 TEPRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           +     VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 40

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	450
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.95
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.95
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	99.86
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	99.86

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.95  E-value=1.3e-29  Score=206.45  Aligned_cols=63  Identities=56%  Similarity=1.088  Sum_probs=59.5

Q ss_pred             CCCCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCCCC
Q 013055          247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPPQ  309 (450)
Q Consensus       247 ~~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p~  309 (450)
                      .+.+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|.
T Consensus        12 ~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A           12 DIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             SCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            45789999999999999999999999999999999999999986 7899999999999999985

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.95  E-value=1.4e-29  Score=207.14  Aligned_cols=62  Identities=56%  Similarity=1.061  Sum_probs=58.8

Q ss_pred             CCCCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCCC
Q 013055          247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP  308 (450)
Q Consensus       247 ~~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p  308 (450)
                      .+.+|||+|||||||.|||+++||+|||||+.+|+|+|+|||+. |+++++|+|+|+|||+.|
T Consensus        15 ~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           15 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             CcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            45789999999999999999999999999999999999999975 789999999999999988

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=99.86  E-value=2.9e-23  Score=169.07  Aligned_cols=43  Identities=58%  Similarity=1.068  Sum_probs=41.2

Q ss_pred             CeEEeeeccccccCCCcchhhhccccccCCCCCCcceeecccc
Q 013055          407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV  449 (450)
Q Consensus       407 prvvVqT~sevdildDGyrWRKYGQK~VKGnp~PRSYYrCT~~  449 (450)
                      .||+|+|.++++++||||+|||||||.||||+|||+|||||++
T Consensus         1 ~r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~   43 (76)
T 2ayd_A            1 SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP   43 (76)
T ss_dssp             CEEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECST
T ss_pred             CeEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCC
Confidence            3899999999999999999999999999999999999999974

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=99.86  E-value=3e-23  Score=169.69  Aligned_cols=43  Identities=77%  Similarity=1.137  Sum_probs=38.2

Q ss_pred             CeEEeeeccccccCCCcchhhhccccccCCCCCCcceeecccc
Q 013055          407 PRIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV  449 (450)
Q Consensus       407 prvvVqT~sevdildDGyrWRKYGQK~VKGnp~PRSYYrCT~~  449 (450)
                      .+|+|+|.+|++++||||+|||||||.||||+|||+|||||++
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~   46 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP   46 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcC
Confidence            4799999999999999999999999999999999999999974

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	450
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-29
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	5e-16

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  106 bits (267), Expect = 4e-29
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 248 PADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHP 306
             DD Y WRKYGQK VKG+ +PRSYYKCT P C V+K VER+  D +     Y+G+HNH 
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHD 68

Query: 307 PP 308
            P
Sbjct: 69  LP 70

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.2 bits (172), Expect = 5e-16
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 443
           VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSY 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	450
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.95
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.85

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=4.5e-30  Score=204.51  Aligned_cols=62  Identities=56%  Similarity=1.061  Sum_probs=59.1

Q ss_pred             CCCCCCccccccCcccCCCCCCCCCcccccCCCCccccceeecc-CCCEEEEeeCCCCCCCCC
Q 013055          247 KPADDPYNWRKYGQKHVKGSEFPRSYYKCTHPNCPVKKKVERSL-DGQVTEIIYKGQHNHPPP  308 (450)
Q Consensus       247 ~~~~DGy~WRKYGQK~ikGs~~pRsYYkCt~~~C~akK~Ver~~-dg~i~~i~Y~G~HnH~~p  308 (450)
                      ...+|||+|||||||.|||+++||+||||++.+|+|+|+|||+. |+.+++|+|+|+|||+.|
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            35789999999999999999999999999999999999999987 789999999999999988

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=6.8e-23  Score=162.88  Aligned_cols=39  Identities=85%  Similarity=1.323  Sum_probs=37.4

Q ss_pred             eeeccccccCCCcchhhhccccccCCCCCCcceeecccc
Q 013055          411 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYIFSLVV  449 (450)
Q Consensus       411 VqT~sevdildDGyrWRKYGQK~VKGnp~PRSYYrCT~~  449 (450)
                      |+|.+|++|+||||+|||||||.|||++|||+|||||+.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~   39 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP   39 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEcccc
Confidence            689999999999999999999999999999999999974