Citrus Sinensis ID: 013062

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEEDYGEED
cccEEEEEEcccccccccccHHHHHHccccccccccccccccccccccccccEEccccccccccEEEEccccccccEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccccccccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccEEEEccccccccEEEEEccccccHHHHHHHHHHHHHccccccccccccccccEEEccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccEEEEEEEccccHHccHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccccccEEEEEEcccccHHEEccccccccccccHcEcccccccccHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHHHcccccEEEEEEEcccccccEEEccccHEEEHHHHEccccEEEEEccHHHHHHHHHcccccccccccHHHHHHHHHHHHHEEEcccccccccHHHHHHcccccccEcccccccccEcccccHHHHHccHHHHHHHHccHHHcccccccccccEEEEEEEEccccccHHHHHHHHHHHcccccEEEEEcccccEEEEEcccccccccccHHHccHEEHEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccc
MRECISIHIGQAGIQVGNACWELYclehgiqpdgqmpsdktvgggddafntffsetgagkhvpravfvdleptvidevrtgtyrqlfhpeqlisgkedaannfarghytIGKEIVDLCLDRIRKLADNCTGLQGFLVFNavgggtgsgLGSLLLERLsvdygkksklgftvypspqvstsvvepynsvlsthsllehTDVAVLLDNEAIYDICRRsldierptytnLNRLVSQVISSLTAslrfdgalnvdvtefqtnlvpyprihfmlssyapvisAEKAYHEQLSVAeitnsafepssmmakcdprhgkyMACClmyrgdvvpkdVNAAVATIktkrtiqfvdwcptgfkcginyqpptvvpggdlakVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHwyvgegmeegefsEAREDLAALEKDYEEvgaesaegeedygeed
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSetgagkhvpravfvdlepTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAeitnsafepssMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATiktkrtiqfvdWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEevgaesaegeedygeed
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVgggtgsglgslllerlsVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYeevgaesaegeedygeed
***CISIHIGQAGIQVGNACWELYCLEHGI**********************F**TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAF******AKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEG**************************************
*RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA*************
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY******************
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES***********
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MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGExxxxxxxxxxxxxxxxxxxxxxxxxxxxYGEED
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query450 2.2.26 [Sep-21-2011]
P33629450 Tubulin alpha chain OS=Pr N/A no 0.997 0.997 0.988 0.0
Q6VAF9450 Tubulin alpha-4 chain OS= N/A no 0.997 0.997 0.984 0.0
Q6VAG0450 Tubulin alpha-2 chain OS= N/A no 0.995 0.995 0.984 0.0
P46259452 Tubulin alpha-1 chain OS= N/A no 0.971 0.966 0.995 0.0
Q9ZRR5451 Tubulin alpha-3 chain OS= N/A no 0.973 0.971 0.990 0.0
Q6VAG1451 Tubulin alpha-1 chain OS= N/A no 0.977 0.975 0.984 0.0
P14641451 Tubulin alpha-2 chain OS= N/A no 0.973 0.971 0.984 0.0
P14640451 Tubulin alpha-1 chain OS= N/A no 0.973 0.971 0.984 0.0
O22347451 Tubulin alpha-1 chain OS= N/A no 0.973 0.971 0.986 0.0
Q9FT36451 Tubulin alpha chain OS=Da N/A no 0.977 0.975 0.975 0.0
>sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1 Back     alignment and function desciption
 Score =  926 bits (2393), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/449 (98%), Positives = 447/449 (99%)

Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMP DKTVGGGDDAFNTFFSETGAGK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
           RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240

Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
           SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAESAEGEEDYGEE 449
           AREDLAALEKDYEEVGAESAEGE+D G++
Sbjct: 421 AREDLAALEKDYEEVGAESAEGEDDEGDD 449
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Prunus dulcis (taxid: 3755)
>sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P46259|TBA1_PEA Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZRR5|TBA3_HORVU Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1 Back     alignment and function description
>sp|Q6VAG1|TBA1_GOSHI Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function description
>sp|P14641|TBA2_MAIZE Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1 Back     alignment and function description
>sp|P14640|TBA1_MAIZE Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1 Back     alignment and function description
>sp|O22347|TBA1_ELEIN Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FT36|TBA_DAUCA Tubulin alpha chain OS=Daucus carota GN=TBA PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
214003725450 alpha tubulin [Betula pendula] 0.997 0.997 0.993 0.0
224284903450 unknown [Picea sitchensis] gi|224286262| 0.997 0.997 0.991 0.0
225452767450 PREDICTED: tubulin alpha chain [Vitis vi 0.997 0.997 0.991 0.0
255562192450 tubulin alpha chain, putative [Ricinus c 0.997 0.997 0.988 0.0
464849450 RecName: Full=Tubulin alpha chain gi|204 0.997 0.997 0.988 0.0
225429189450 PREDICTED: tubulin alpha chain [Vitis vi 0.997 0.997 0.988 0.0
224103789451 tubulin alpha-5 chain [Populus trichocar 0.997 0.995 0.984 0.0
224056288451 tubulin alpha-3 chain [Populus trichocar 0.997 0.995 0.982 0.0
134035496450 alpha-tubulin [Gossypium hirsutum] gi|22 0.997 0.997 0.984 0.0
118481202451 unknown [Populus trichocarpa] 0.997 0.995 0.982 0.0
>gi|214003725|gb|ACJ60905.1| alpha tubulin [Betula pendula] Back     alignment and taxonomy information
 Score =  930 bits (2403), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 446/449 (99%), Positives = 448/449 (99%)

Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
           RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240

Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
           SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS
Sbjct: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAESAEGEEDYGEE 449
           AREDLAALEKDYEEVGAESAEGE+D G+E
Sbjct: 421 AREDLAALEKDYEEVGAESAEGEDDEGDE 449

Source: Betula pendula

Species: Betula pendula

Genus: Betula

Family: Betulaceae

Order: Fagales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224284903|gb|ACN40181.1| unknown [Picea sitchensis] gi|224286262|gb|ACN40840.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|225452767|ref|XP_002283198.1| PREDICTED: tubulin alpha chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|255562192|ref|XP_002522104.1| tubulin alpha chain, putative [Ricinus communis] gi|223538703|gb|EEF40304.1| tubulin alpha chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|464849|sp|P33629.1|TBA_PRUDU RecName: Full=Tubulin alpha chain gi|20413|emb|CAA47635.1| alpha-tubulin [Prunus dulcis] Back     alignment and taxonomy information
>gi|225429189|ref|XP_002275973.1| PREDICTED: tubulin alpha chain [Vitis vinifera] Back     alignment and taxonomy information
>gi|224103789|ref|XP_002313194.1| tubulin alpha-5 chain [Populus trichocarpa] gi|222849602|gb|EEE87149.1| tubulin alpha-5 chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056288|ref|XP_002298794.1| tubulin alpha-3 chain [Populus trichocarpa] gi|118481133|gb|ABK92520.1| unknown [Populus trichocarpa] gi|222846052|gb|EEE83599.1| tubulin alpha-3 chain [Populus trichocarpa] Back     alignment and taxonomy information
>gi|134035496|gb|ABO47736.1| alpha-tubulin [Gossypium hirsutum] gi|223453028|gb|ACM89778.1| alpha-tubulin 6 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|118481202|gb|ABK92552.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query450
TAIR|locus:2010677450 TUA4 "tubulin alpha-4 chain" [ 0.96 0.96 0.946 4.1e-223
TAIR|locus:2031015450 TUA2 "tubulin alpha-2 chain" [ 0.96 0.96 0.946 4.1e-223
TAIR|locus:3439219450 TUA6 "Tubulin alpha-6" [Arabid 0.96 0.96 0.944 8.5e-223
TAIR|locus:2183259450 TUA3 "tubulin alpha-3" [Arabid 0.96 0.96 0.902 1.7e-215
TAIR|locus:2183154450 TUA5 "tubulin alpha-5" [Arabid 0.96 0.96 0.902 1.7e-215
TAIR|locus:2010846450 TUA1 "alpha-1 tubulin" [Arabid 0.96 0.96 0.868 4.6e-208
UNIPROTKB|Q3ZCJ7449 TUBA1C "Tubulin alpha-1C chain 0.96 0.962 0.837 1.1e-206
UNIPROTKB|Q9BQE3449 TUBA1C "Tubulin alpha-1C chain 0.96 0.962 0.835 2.3e-206
MGI|MGI:1095409449 Tuba1c "tubulin, alpha 1C" [Mu 0.96 0.962 0.833 2.9e-206
UNIPROTKB|F2Z4C1451 TUBA3C "Uncharacterized protei 0.96 0.957 0.833 3.7e-206
TAIR|locus:2010677 TUA4 "tubulin alpha-4 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2154 (763.3 bits), Expect = 4.1e-223, P = 4.1e-223
 Identities = 409/432 (94%), Positives = 413/432 (95%)

Query:     1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
             MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK
Sbjct:     1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query:    61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
             HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD
Sbjct:    61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query:   121 RIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
             RIRKLADNCTGLQGFLVFNAV                 VDYGKKSKLGFTVYPSPQVSTS
Sbjct:   121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180

Query:   181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
             VVEPYNSVLSTHSLLEHTDV++LLDNEAIYDICRRSL IERPTYTNLNRLVSQVISSLTA
Sbjct:   181 VVEPYNSVLSTHSLLEHTDVSILLDNEAIYDICRRSLSIERPTYTNLNRLVSQVISSLTA 240

Query:   241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
             SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEP+S
Sbjct:   241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPAS 300

Query:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
             MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQFVDWCPTGFKCGINYQPP
Sbjct:   301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query:   361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
             TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct:   361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query:   421 AREDLAALEKDY 432
             AREDLAALEKDY
Sbjct:   421 AREDLAALEKDY 432
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA;TAS
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0045298 "tubulin complex" evidence=ISS
GO:0009507 "chloroplast" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0071258 "cellular response to gravity" evidence=IMP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
TAIR|locus:2031015 TUA2 "tubulin alpha-2 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:3439219 TUA6 "Tubulin alpha-6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183259 TUA3 "tubulin alpha-3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183154 TUA5 "tubulin alpha-5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010846 TUA1 "alpha-1 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZCJ7 TUBA1C "Tubulin alpha-1C chain" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BQE3 TUBA1C "Tubulin alpha-1C chain" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1095409 Tuba1c "tubulin, alpha 1C" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z4C1 TUBA3C "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P68365TBA1C_CRIGRNo assigned EC number0.86190.99550.9977yesno
B9DGT7TBA2_ARATHNo assigned EC number0.98620.96660.9666yesno
Q9ZRJ4TBA_CHLVUNo assigned EC number0.96580.97550.9733N/Ano
P22275TBA3_MAIZENo assigned EC number0.92200.99770.9977N/Ano
Q9FT36TBA_DAUCANo assigned EC number0.9750.97770.9756N/Ano
Q27352TBA_TRYCRNo assigned EC number0.89550.99550.9933N/Ano
Q53M52TBA2_ORYSJNo assigned EC number0.98170.97330.9711yesno
P29511TBA6_ARATHNo assigned EC number0.98390.96660.9666yesno
P28752TBA1_ORYSJNo assigned EC number0.93310.99770.9977nono
P28287TBA_OXYGRNo assigned EC number0.95630.96660.9666N/Ano
Q71G51TBA_NEOCANo assigned EC number0.93790.96660.9602N/Ano
Q02245TBA5_MAIZENo assigned EC number0.93790.96660.9666N/Ano
Q43473TBA1_HORVUNo assigned EC number0.94250.96660.9666N/Ano
P46259TBA1_PEANo assigned EC number0.99540.97110.9668N/Ano
B9DHQ0TBA5_ARATHNo assigned EC number0.94250.96660.9666nono
O22347TBA1_ELEINNo assigned EC number0.98630.97330.9711N/Ano
P12543TBA_PLAYONo assigned EC number0.89330.99770.9911N/Ano
Q56WH1TBA3_ARATHNo assigned EC number0.94250.96660.9666nono
Q9ZRR5TBA3_HORVUNo assigned EC number0.99080.97330.9711N/Ano
Q25563TBA13_NAEGRNo assigned EC number0.93840.97550.9690N/Ano
P11481TBA1_VOLCANo assigned EC number0.95170.96660.9645N/Ano
P09243TBA2_STYLENo assigned EC number0.94250.96440.9665N/Ano
Q38771TBA_AVESANo assigned EC number0.91940.99331.0N/Ano
Q6VAG1TBA1_GOSHINo assigned EC number0.98400.97770.9756N/Ano
Q6VAG0TBA2_GOSHINo assigned EC number0.98440.99550.9955N/Ano
Q96460TBA2_HORVUNo assigned EC number0.98170.97330.9711N/Ano
P09205TBA2_CHLRENo assigned EC number0.94250.96660.9645N/Ano
P09204TBA1_CHLRENo assigned EC number0.94710.96660.9645N/Ano
P68373TBA1C_MOUSENo assigned EC number0.86190.99550.9977yesno
P10872TBA_TETPYNo assigned EC number0.93180.97770.9799N/Ano
P10873TBA_TOXGONo assigned EC number0.93790.96660.9602N/Ano
Q08114TBA_EUPOCNo assigned EC number0.94020.96660.9666N/Ano
P14641TBA2_MAIZENo assigned EC number0.98400.97330.9711N/Ano
P14640TBA1_MAIZENo assigned EC number0.98400.97330.9711N/Ano
P14642TBA_PLAFKNo assigned EC number0.90440.99770.9911N/Ano
O22349TBA3_ELEINNo assigned EC number0.92870.99770.9977N/Ano
P33623TBA1_ANEPHNo assigned EC number0.98610.960.9578N/Ano
P41351TBA_TETTHNo assigned EC number0.93400.97770.9799N/Ano
P33625TBA_EUGGRNo assigned EC number0.9250.97770.9756N/Ano
P33627TBA6_MAIZENo assigned EC number0.94020.96660.9666N/Ano
P33629TBA_PRUDUNo assigned EC number0.98880.99770.9977N/Ano
Q9BQE3TBA1C_HUMANNo assigned EC number0.86410.99550.9977yesno
P11237TBA1_NAEGRNo assigned EC number0.94070.97550.9690N/Ano
Q0WV25TBA4_ARATHNo assigned EC number0.98620.96660.9666yesno
P11480TBAE_PHYPONo assigned EC number0.88930.98440.9866N/Ano
P28268TBA_EUPVANo assigned EC number0.92040.97550.9755N/Ano
P50258TBAD_PHYPONo assigned EC number0.91090.99550.9955N/Ano
Q6VAF9TBA4_GOSHINo assigned EC number0.98440.99770.9977N/Ano
Q9ZRB7TBA_WHEATNo assigned EC number0.97940.97330.9711N/Ano
P04106TBA_TRYBRNo assigned EC number0.90220.99550.9933N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020930001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence;; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity) (450 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00029807001
SubName- Full=Chromosome chr10 scaffold_50, whole genome shotgun sequence;; Tubulin is the majo [...] (445 aa)
     • •0.800
GSVIVG00023281001
SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_29, whole genome shotg [...] (447 aa)
     • •0.800
GSVIVG00017820001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence;; Tubulin is the majo [...] (445 aa)
     • •0.800
TUB
SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence;; Tubulin is the major [...] (446 aa)
     • •0.800
GSVIVG00014415001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence;; Tubulin is the major [...] (448 aa)
     • •0.800
GSVIVG00009147001
SubName- Full=Chromosome undetermined scaffold_222, whole genome shotgun sequence;; Tubulin is [...] (449 aa)
     • •0.800
GSVIVG00000394001
SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence;; Tubulin is the majo [...] (447 aa)
     • •0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 0.0
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 0.0
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 0.0
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 0.0
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 1e-174
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-167
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-155
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-149
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 1e-134
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 1e-112
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 1e-101
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 2e-98
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 1e-91
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 8e-82
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 6e-75
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 3e-72
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 1e-62
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 3e-22
cd06060493 cd06060, misato, Human Misato shows similarity wit 1e-06
cd02202349 cd02202, FtsZ_type2, FtsZ is a GTPase that is simi 0.003
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information 
 Score = 1049 bits (2713), Expect = 0.0
 Identities = 442/449 (98%), Positives = 447/449 (99%)

Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK
Sbjct: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120

Query: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
           RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVST+
Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRL+SQVISSLTA
Sbjct: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTA 240

Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
           SLRFDGALNVD+TEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEP+S
Sbjct: 241 SLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPAS 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
           MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP
Sbjct: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCMISNST+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAESAEGEEDYGEE 449
           AREDLAALEKDYEEVGAESAEGE D GEE
Sbjct: 421 AREDLAALEKDYEEVGAESAEGEGDEGEE 449

Length = 450
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 450
COG5023443 Tubulin [Cytoskeleton] 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
cd06060493 misato Human Misato shows similarity with Tubulin/ 100.0
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 100.0
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 100.0
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 100.0
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.97
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.94
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.92
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.92
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.9
PRK13018378 cell division protein FtsZ; Provisional 99.9
PF14881180 Tubulin_3: Tubulin domain 99.88
PRK09330384 cell division protein FtsZ; Validated 99.84
PF10644115 Misat_Tub_SegII: Misato Segment II tubulin-like do 99.51
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 99.37
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.35
PF13809345 Tubulin_2: Tubulin like 97.62
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-130  Score=941.01  Aligned_cols=438  Identities=60%  Similarity=1.060  Sum_probs=422.4

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062            1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (450)
Q Consensus         1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~   80 (450)
                      |||||+||+||||||||.+||+++|.||||.++|..+...+  .+.++.++||+|.++++||||||+||+||+||+.+++
T Consensus         1 mREIItlq~GQcGnQiG~~fWe~~c~EHGI~~~G~~~~~~~--~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~   78 (443)
T COG5023           1 MREIITLQVGQCGNQIGNAFWETLCLEHGIGPDGTLLDSSD--EGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRN   78 (443)
T ss_pred             CceeEEEecccchhHHHHHHHHHHHHhhCcCCCCCCCCCcc--cccccccceeeecCCCccccceEEEecCcchHhhhcc
Confidence            99999999999999999999999999999999999765444  3568999999999999999999999999999999999


Q ss_pred             cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062           81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~  160 (450)
                      |+|+.+|+|++++.+++|+|||||+|+|.+|+++.|+++|+|||++|.||.||||+++||+|||||||+|+.|+|.|++|
T Consensus        79 g~y~~lf~Pen~i~gkegAgNnwA~GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS~gGGTGSG~GslLLerl~~e  158 (443)
T COG5023          79 GPYGSLFHPENIIFGKEGAGNNWARGHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREE  158 (443)
T ss_pred             CccccccChhheeeccccccccccccccchhHHHHHHHHHHHHHHhhcCccccceeeeeeccCcCcccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062          161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA  240 (450)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (450)
                      ||||.+.+|+|+|.+..++++|||||++|++++|.+++|+++++||.+|+++|.+.+++++|+|.++|++||++|+++|.
T Consensus       159 ypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTt  238 (443)
T COG5023         159 YPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTT  238 (443)
T ss_pred             cchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhh
Confidence            99999999999999888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062          241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR  320 (450)
Q Consensus       241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R  320 (450)
                      ++||||++|.||++|.+||+||||+||+.++|+|++...+..+++.++.++++++|+++|+|++|+|+.++|+++++++|
T Consensus       239 slRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dpr~g~y~~~~~l~r  318 (443)
T COG5023         239 SLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDPRKGRYMAVCLLFR  318 (443)
T ss_pred             eeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecCCCCeeeehhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062          321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA  400 (450)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~  400 (450)
                      |+..+++|++++.+++.|++..|++|+|+++++++|+.+|..     ..+.+.++|+|+|+|+|...|+++.++|++||+
T Consensus       319 G~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~-----~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~  393 (443)
T COG5023         319 GDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSE-----PAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFK  393 (443)
T ss_pred             cCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcc-----cccceeeeEeecCcHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999998832     334589999999999999999999999999999


Q ss_pred             cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccCccCccc
Q 013062          401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEED  445 (450)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~  445 (450)
                      ||||||||+++||||+||.||++++++|.++|++++++.-+++++
T Consensus       394 krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~~  438 (443)
T COG5023         394 KRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE  438 (443)
T ss_pred             hhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchhh
Confidence            999999999999999999999999999999999998776555443

>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology [] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF13809 Tubulin_2: Tubulin like Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 0.0
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 0.0
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 0.0
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 0.0
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 0.0
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 0.0
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 0.0
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 0.0
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 0.0
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 0.0
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 0.0
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-98
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-98
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-98
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 2e-98
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 2e-98
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 2e-98
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 2e-98
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 2e-98
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 2e-98
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 5e-95
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 2e-79
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 6e-77
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 5e-54
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 7e-54
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure 
Iteration: 1

 Score =  792 bits (2045), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/432 (83%), Positives = 402/432 (93%)
Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60
Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLD 120
Query: 121 RIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS 180
           R+RKLAD CTGLQGFLVF++                  VDYGKKSKL F++YP+PQVST+
Sbjct: 121 RVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180
Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
           SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSVAEITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300
Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
            M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKRTIQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP 360
Query: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCM+SN+T+VAE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
Query: 421 AREDLAALEKDY 432
           ARED+AALEKDY
Sbjct: 421 AREDMAALEKDY 432
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query450
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 0.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 0.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 0.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 0.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 0.0
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 7e-12
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
 Score =  814 bits (2104), Expect = 0.0
 Identities = 383/450 (85%), Positives = 429/450 (95%)

Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
           RIRKLAD CTGLQGFLVF++ GGGTGSG  SLL+ERLSVDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240

Query: 241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS 300
           SLRFDGALNVD+TEFQTNLVPYPRIHF L++YAPVISAEKAYHEQLSVAEITN+ FEP++
Sbjct: 241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN 300

Query: 301 MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP 360
            M KCDPRHGKYMACCL+YRGDVVPKDVNAA+ATIKTKR+IQFVDWCPTGFK GINYQPP
Sbjct: 301 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360

Query: 361 TVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420
           TVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSE
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE 420

Query: 421 AREDLAALEKDYEEVGAESAEGEEDYGEED 450
           ARED+AALEKDYEEVG +S EGE +   E+
Sbjct: 421 AREDMAALEKDYEEVGVDSVEGEGEEEGEE 450
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Length = 36 Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Length = 360 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 100.0
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 100.0
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 100.0
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 100.0
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 100.0
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 100.0
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 100.0
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.96
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.96
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 99.75
3r4v_A315 Putative uncharacterized protein; tubulin, unknown 99.22
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 97.18
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
Probab=100.00  E-value=5e-124  Score=955.85  Aligned_cols=449  Identities=85%  Similarity=1.398  Sum_probs=423.6

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062            1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (450)
Q Consensus         1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~   80 (450)
                      |||||+||+||||||||.+||+++|.||+|+++|.++.++......+++++||+|++.++|+||||||||||+||++++.
T Consensus         1 mrEii~iqvGQcGnQIG~~~We~~~~EHgi~~~g~~~~~~~~~~~~~~~~~fF~e~~~gk~vPRavlvDlEp~vid~v~~   80 (451)
T 3ryc_A            1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (451)
T ss_dssp             CCCEEEEEEHHHHHHHHHHHHHHHHHHHTCCTTSCCCCC-------CGGGGTEEECTTSCEEESEEEEESSSHHHHHHHH
T ss_pred             CceEEEEeccCchhHHHHHHHHHHHhhcCCCCCCCcCCcccccccccchhhhcccCCCCccccceeeecCCcchhheeee
Confidence            99999999999999999999999999999999998876654323467899999999999999999999999999999999


Q ss_pred             cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062           81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~  160 (450)
                      |+++.+|+|++++++++|||||||+|||..|+++.|+++|+||+++|+||++|||+++||+|||||||+|+.|+|.|+++
T Consensus        81 g~~~~lf~p~~~i~gk~gAgNNwA~G~yt~G~e~~d~v~d~IRk~~E~cD~lqGF~i~hSlgGGTGSG~gs~lle~L~~e  160 (451)
T 3ryc_A           81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD  160 (451)
T ss_dssp             STTTTTSCGGGEEECSSCCTTCHHHHHHTSHHHHHHHHHHHHHHHHHTCSSCCEEEEEEESSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCHHHeeeccccccCCCCeeecccchHhHHHHHHHHHHHHHcCCCccceEEEeccCCCCCccHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062          161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA  240 (450)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (450)
                      ||++.+++++|+|+...+++++++||++|++++|.+++|+++++||++|+++|.+.+++..|+|.++|++||++|+++|.
T Consensus       161 y~kk~~~~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~  240 (451)
T 3ryc_A          161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA  240 (451)
T ss_dssp             TTTCEEEEEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCcceEEEEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhccccccc
Confidence            99999999999999877899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCccchhhhhccCCCCCcccccccccccccccccccccccCHHHHHHHhcCCCCCCcccCCCCCcchhhccccc
Q 013062          241 SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR  320 (450)
Q Consensus       241 ~~r~~~~~~~~l~~l~~~L~p~p~~~fl~~s~~Pl~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ls~~~~~R  320 (450)
                      ++||||++|.||.+|.+|||||||+||+.++|+|+++..+..++++++.+|++++|+++|+|++|||+.++|+++++++|
T Consensus       241 slRf~G~lN~Dl~~l~tnLVP~PrlHF~~~s~aPl~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp~~gky~a~~~~~R  320 (451)
T 3ryc_A          241 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR  320 (451)
T ss_dssp             HHHTTCSSSCSHHHHHHHHCSSSSCCCCEEEEECCCBSSSCCCCCCCHHHHHHHTTCGGGBSSCCCGGGSCEEEEEEEEE
T ss_pred             ccccCcccccCHHHHhhccCCCCceeeeccccCccccccccccccCCHHHHHHHHhccccceEecCCCCCchheehhhcc
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             CccChhhHHHHHHhhhccCcccccccCCCCceeEEeccCCccCCCCCcccccceeEeecCCchhHHHHHHHHHHHHHhhc
Q 013062          321 GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA  400 (450)
Q Consensus       321 G~~~~~~~~~~~~~~~~~~~~~f~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~l~~l~~~~~~m~~  400 (450)
                      |++++++++.++..+|.|++..|++|+|++||+++|++||..+|++++++.++++|+|+|+|+|.+.|+++.+||++||+
T Consensus       321 G~v~~~dv~~~i~~ik~k~~~~Fv~W~p~~~kv~i~~~pP~~~p~~~la~~~~s~~~lsNsTaI~~~f~rl~~kFd~m~~  400 (451)
T 3ryc_A          321 GDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA  400 (451)
T ss_dssp             ESCCHHHHHHHHHHHHHHCCCCBCTTSCEEEEEEEECSCCCCCTTSSBCCCSEEEEEEEEEGGGHHHHHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHhhcCCcceEEEccCceeeeeeccCCccCCCccccccceeeEEecCchHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceeccccCCCCcchHHHHHHHHHHHHHHHHHhcccCccCcccCCCC
Q 013062          401 KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESAEGEEDYGEE  449 (450)
Q Consensus       401 rkAflH~Y~~~Gmee~eF~Ea~~~l~~l~~~Y~~~~~~~~~~~~~~~~~  449 (450)
                      ||||||||++|||||+||.||+++|++|+++|++++.+..|+++++++|
T Consensus       401 krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~~  449 (451)
T 3ryc_A          401 KRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGE  449 (451)
T ss_dssp             TTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred             cceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence            9999999999999999999999999999999999998876655444444
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET: GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A* Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 450
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 1e-132
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 1e-131
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 1e-120
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 1e-110
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 8e-94
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 7e-83
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  380 bits (977), Expect = e-132
 Identities = 208/245 (84%), Positives = 234/245 (95%)

Query: 1   MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
           MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQMPSDKT+GGGDD+FNTFFSETGAGK
Sbjct: 1   MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK 60

Query: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
           HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LD
Sbjct: 61  HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD 120

Query: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
           RIRKLAD CTGLQGF VF++ GGGTGSG  SLL+ERLSVDYGKKSKL F++YP+PQVST+
Sbjct: 121 RIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA 180

Query: 181 VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 240
           VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR+LDIERPTYTNLNRL+ Q++SS+TA
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240

Query: 241 SLRFD 245
           SLRFD
Sbjct: 241 SLRFD 245
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query450
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 99.64
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 99.63
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 99.61
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 99.59
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2e-75  Score=551.77  Aligned_cols=245  Identities=85%  Similarity=1.397  Sum_probs=236.3

Q ss_pred             CEeEEEEecCcchhHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccccccCCCCccccceeeeCCCCceeecccc
Q 013062            1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (450)
Q Consensus         1 M~Eii~iq~Gq~gn~ig~~fw~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~~~pRallvD~e~~~i~~~~~   80 (450)
                      |||||+||+||||||||.+||+++++||+++++|....+....+.++..++||+|.++++|+||||+||+||++|++++.
T Consensus         1 MrEII~iqvGQcGnQIG~~~w~~l~~Eh~i~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRavlvD~E~~vI~~i~~   80 (245)
T d1tuba1           1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT   80 (245)
T ss_dssp             CCCCCEECCSHHHHHHHHHHHHHHTTTCCTTTCCCCSCCTTSSTTCCCSCCSSCSSSCTTTSCSCCEEESSHHHHHHHSG
T ss_pred             CCcEEEEeccCHHHHHHHHHHHHHHHHhCcCCCCCccCccccccccccchhhhhcccCCccccceeEecCCcceeeeecc
Confidence            99999999999999999999999999999999998776655444577889999999999999999999999999999999


Q ss_pred             cccccccCCceeecccccccCCCcccccccChhhHHHHHHHHHHHhhhcCCCCceeEEeecCCCccccchhHhHHHhhhh
Q 013062           81 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD  160 (450)
Q Consensus        81 ~~~~~~~~~~~~~~~~~g~gnn~a~G~~~~g~~~~~~~~d~ir~~~E~cD~lqgf~i~~sl~GGtGSG~~s~l~e~l~d~  160 (450)
                      ++++++|+|++++++++|+|||||+|||.+|+++.|+++|.||+++|+||++|||+++||++||||||+|++|+|.|+|+
T Consensus        81 ~~~~~~f~~~~~i~~~~gsgNNwA~Gy~~~G~~~~d~i~d~iRk~~E~cD~l~gf~i~hSl~GGTGSGlGs~l~e~l~d~  160 (245)
T d1tuba1          81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVD  160 (245)
T ss_dssp             GGCSCCCCSSSEEECCSCCCCSSSTTTTSHHHHTTHHHHHHHHHHTTSSSCCCCEEEECCSSCGGGTHHHHHHTHHHHHH
T ss_pred             CcchhccCccccccCCCCcccchHhhhhccchhhHHHHHHHHHHHHHhCCCcCceeeeeecCCcCcCchhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceeEEEEecCCCCCCcchhhhHHHHHHHHhhccCCeeeEecchhhHhhhhccCCCCCCCccchhHHHHHHhhcccc
Q 013062          161 YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA  240 (450)
Q Consensus       161 yp~~~i~~~~v~P~~~~~~~~~~~yN~~lsl~~l~e~~d~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~  240 (450)
                      ||++.+++++|+|+...+++++||||++|+|++|.+++|+++++||++|+++|.+.+++..|+|+++|++||+.|+++|+
T Consensus       161 yp~~~~~~~~V~P~~~~~~~vvqpYNtvLsl~~L~~~sD~v~~~dN~al~~i~~~~l~i~~~s~~~lN~via~~ls~~T~  240 (245)
T d1tuba1         161 YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA  240 (245)
T ss_dssp             TTTSCEEEEECCCCSSCSTTTTHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred             cccccccceEEeccccCCCcccccchhhhhhHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhhh
Confidence            99999999999998777899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccC
Q 013062          241 SLRFD  245 (450)
Q Consensus       241 ~~r~~  245 (450)
                      ++||.
T Consensus       241 ~~RF~  245 (245)
T d1tuba1         241 SLRFD  245 (245)
T ss_dssp             TTTSS
T ss_pred             hccCC
Confidence            99984
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure