Citrus Sinensis ID: 013106

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45

MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNPAAEETEGTNEDEKEQLLQTEQKWEE

ccHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccc

ccHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccc

MNQMLLANHSTLldlleipqlmdtcvrngnydeaLDLEAYVCKlstlhpklPIIQALAAEVKQTTQSLLSQLLQKLRsniqlpecLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAifaddtsgseenydgglLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMglgwvgldfrgllppLFEEAVLKLFLKNMSTAVENFQLVLdshrwvplpavgypahsvgeesqedvtppsylmehpplaVFINGVSAAMnelrpcaplsLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVayphcatcfgrcypggaALIMDAKSLYDglgrlsthspsrelpkpvndadgktitengdlpvvengvnpaaeetegtnedEKEQLLQTEQKWEE

MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLsthspsrelpkpvndadgktitengdlpvveNGVNPaaeetegtnedekEQLLQTEQKWEE

MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVkqttqsllsqllqklRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNPAAeetegtnedekeQLLQTEQKWEE

*****LANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAH**************YLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLG***************************************************************

*NQML*ANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIF**************LLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDS*****************************LMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYST*********GLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTH**********************************************************

MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVGYPAH************PSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVENGVNP*************************

*NQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMSTAVENFQLVLDSHRWVPLPAVG************DVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAALIMDAKSLYDGLGRLSTH**********************************************************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		449	2.2.26 [Sep-21-2011]
Q96MW5		612	Conserved oligomeric Golg	yes	no	0.817	0.599	0.377	1e-73
Q2TBH9		626	Conserved oligomeric Golg	yes	no	0.819	0.587	0.378	3e-73
Q9JJA2		640	Conserved oligomeric Golg	yes	no	0.817	0.573	0.380	3e-73
Q55BB8		779	Conserved oligomeric Golg	yes	no	0.799	0.460	0.329	4e-58
Q9VKH0		570	Conserved oligomeric Golg	yes	no	0.815	0.642	0.328	6e-57
O44502		743	Conserved oligomeric Golg	yes	no	0.645	0.390	0.237	2e-12
Q96WW5		378	Conserved oligomeric Golg	yes	no	0.458	0.544	0.228	8e-11
Q04632		607	Conserved oligomeric Golg	yes	no	0.349	0.258	0.273	7e-06

>sp\|Q96MW5\|COG8_HUMAN Conserved oligomeric Golgi complex subunit 8 OS=Homo sapiens GN=COG8 PE=1 SV=2	Back alignment and function desciption

 Score =  277 bits (709), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 144/381 (37%), Positives = 217/381 (56%), Gaps = 14/381 (3%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           MN + L  H+ +L++LEIPQLMDTCVRN  Y+EAL+L AYV +L   +  +P+IQ +  E
Sbjct: 141 MNSLTLNRHTEILEILEIPQLMDTCVRNSYYEEALELAAYVRRLERKYSSIPVIQGIVNE 200

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V+Q+ Q +LSQL+Q+LR+NIQLP CLR+IGYLRR+ VF+E E+R++FL+ R+AWL  IL 
Sbjct: 201 VRQSMQLMLSQLIQQLRTNIQLPACLRVIGYLRRMDVFTEAELRVKFLQARDAWLRSILT 260

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD------TSGSEENYDGGLLFSWAM 174
            +   + Y ++   I   R+HLFD++ QYRAIF+D+        G     +  +   W +
Sbjct: 261 AIPNDDPYFHITKTIEASRVHLFDIITQYRAIFSDEDPLLPPAMGEHTVNESAIFHGWVL 320

Query: 175 HQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF 234
            +++  L+ L+  L +   G  L ++L QCMY  +    VG DFRG L P+F+   +  F
Sbjct: 321 QKVSQFLQVLETDLYRGIGG-HLDSLLGQCMYFGLSFSRVGADFRGQLAPVFQRVAISTF 379

Query: 235 LKNMSTAVENFQLVLDSHRWVPLPAV----GYPAHSVGEESQEDVTPPSYLMEHPPLAVF 290
            K +   VE FQ  ++S+  +  PA+      PA +V       + PP  L++ PPLA F
Sbjct: 380 QKAIQETVEKFQEEMNSYMLISAPAILGTSNMPA-AVPATQPGTLQPPMVLLDFPPLACF 438

Query: 291 INGVSAAMNELRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTR--MLRENESGLFLSL 348
           +N +  A N+LR C P++L   +   L   L  V+  +L +           E  LF+  
Sbjct: 439 LNNILVAFNDLRLCCPVALAQDVTGALEDALAKVTKIILAFHRAEEAAFSSGEQELFVQF 498

Query: 349 CRAFIEVAYPHCATCFGRCYP 369
           C  F+E   P+   C    +P
Sbjct: 499 CTVFLEDLVPYLNRCLQVLFP 519

Required for normal Golgi function.
Homo sapiens (taxid: 9606)

>sp\|Q2TBH9\|COG8_BOVIN Conserved oligomeric Golgi complex subunit 8 OS=Bos taurus GN=COG8 PE=2 SV=1	Back alignment and function description

>sp\|Q9JJA2\|COG8_MOUSE Conserved oligomeric Golgi complex subunit 8 OS=Mus musculus GN=Cog8 PE=2 SV=3	Back alignment and function description

>sp\|Q55BB8\|COG8_DICDI Conserved oligomeric Golgi complex subunit 8 OS=Dictyostelium discoideum GN=cog8 PE=3 SV=1	Back alignment and function description

>sp\|Q9VKH0\|COG8_DROME Conserved oligomeric Golgi complex subunit 8 OS=Drosophila melanogaster GN=CG6488 PE=2 SV=1	Back alignment and function description

>sp\|O44502\|COG8_CAEEL Conserved oligomeric Golgi complex subunit 8 OS=Caenorhabditis elegans GN=cogc-8 PE=3 SV=1	Back alignment and function description

>sp\|Q96WW5\|COG8_SCHPO Conserved oligomeric Golgi complex subunit 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cog8 PE=3 SV=2	Back alignment and function description

>sp\|Q04632\|COG8_YEAST Conserved oligomeric Golgi complex subunit 8 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COG8 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
343887270		568	conserved oligomeric Golgi complex compo	1.0	0.790	0.988	0.0
224088794		575	predicted protein [Populus trichocarpa]	0.988	0.772	0.871	0.0
359476248		571	PREDICTED: conserved oligomeric Golgi co	0.977	0.768	0.841	0.0
255550087		574	Conserved oligomeric Golgi complex compo	0.977	0.764	0.875	0.0
449447141		570	PREDICTED: conserved oligomeric Golgi co	0.988	0.778	0.835	0.0
356559236		576	PREDICTED: LOW QUALITY PROTEIN: conserve	0.993	0.774	0.830	0.0
356502551		580	PREDICTED: conserved oligomeric Golgi co	0.964	0.746	0.845	0.0
357517841		599	Conserved oligomeric Golgi complex subun	0.991	0.742	0.808	0.0
297811317		568	hypothetical protein ARALYDRAFT_488040 [	0.964	0.762	0.828	0.0
18416732		569	conserved oligomeric Golgi complex compo	0.966	0.762	0.822	0.0

>gi\|343887270\|dbj\|BAK61816.1\| conserved oligomeric Golgi complex component [Citrus unshiu]	Back alignment and taxonomy information

 Score =  922 bits (2383), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/449 (98%), Positives = 445/449 (99%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE
Sbjct: 120 MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 179

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE
Sbjct: 180 VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 239

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAH 180
           DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAH
Sbjct: 240 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAH 299

Query: 181 LKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMST 240
           LKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF KNMST
Sbjct: 300 LKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFSKNMST 359

Query: 241 AVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNE 300
           AVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNE
Sbjct: 360 AVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNE 419

Query: 301 LRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHC 360
           LRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHC
Sbjct: 420 LRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHC 479

Query: 361 ATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVEN 420
           ATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVEN
Sbjct: 480 ATCFGRCYPGGAALIMDAKSLYDGLGRLSTHSPSRELPKPVNDADGKTITENGDLPVVEN 539

Query: 421 GVNPAAEETEGTNEDEKEQLLQTEQKWEE 449
           GVNPAAEETEGTN DEKEQ LQTE+K EE
Sbjct: 540 GVNPAAEETEGTNVDEKEQPLQTEEKPEE 568

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224088794\|ref\|XP_002308543.1\| predicted protein [Populus trichocarpa] gi\|222854519\|gb\|EEE92066.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|359476248\|ref\|XP_002279909.2\| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Vitis vinifera] gi\|296081667\|emb\|CBI20672.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255550087\|ref\|XP_002516094.1\| Conserved oligomeric Golgi complex component, putative [Ricinus communis] gi\|223544580\|gb\|EEF46096.1\| Conserved oligomeric Golgi complex component, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|449447141\|ref\|XP_004141327.1\| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cucumis sativus] gi\|449525202\|ref\|XP_004169607.1\| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356559236\|ref\|XP_003547906.1\| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|356502551\|ref\|XP_003520082.1\| PREDICTED: conserved oligomeric Golgi complex subunit 8-like [Glycine max]	Back alignment and taxonomy information

>gi\|357517841\|ref\|XP_003629209.1\| Conserved oligomeric Golgi complex subunit [Medicago truncatula] gi\|355523231\|gb\|AET03685.1\| Conserved oligomeric Golgi complex subunit [Medicago truncatula]	Back alignment and taxonomy information

>gi\|297811317\|ref\|XP_002873542.1\| hypothetical protein ARALYDRAFT_488040 [Arabidopsis lyrata subsp. lyrata] gi\|297319379\|gb\|EFH49801.1\| hypothetical protein ARALYDRAFT_488040 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|18416732\|ref\|NP_568256.1\| conserved oligomeric Golgi complex component-related protein [Arabidopsis thaliana] gi\|27754564\|gb\|AAO22729.1\| unknown protein [Arabidopsis thaliana] gi\|28393871\|gb\|AAO42343.1\| unknown protein [Arabidopsis thaliana] gi\|332004364\|gb\|AED91747.1\| conserved oligomeric Golgi complex component-related protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		449
TAIR\|locus:2143074		569	AT5G11980 "AT5G11980" [Arabido	0.946	0.746	0.798	1.7e-185
UNIPROTKB\|F1NSJ6		619	COG8 "Uncharacterized protein"	0.888	0.644	0.369	3.7e-64
ZFIN\|ZDB-GENE-050320-74		634	cog8 "component of oligomeric	0.870	0.616	0.360	1.4e-62
UNIPROTKB\|H3BQV3		534	COG8 "Conserved oligomeric Gol	0.817	0.687	0.356	3.8e-62
UNIPROTKB\|Q96MW5		612	COG8 "Conserved oligomeric Gol	0.817	0.599	0.356	3.8e-62
UNIPROTKB\|E2RA98		622	COG8 "Uncharacterized protein"	0.817	0.590	0.359	7.9e-62
UNIPROTKB\|F1S390		650	LOC100517220 "Uncharacterized	0.817	0.564	0.356	7.9e-62
RGD\|1307074		624	Cog8 "component of oligomeric	0.817	0.588	0.359	7.9e-62
UNIPROTKB\|F1N5R4		626	COG8 "Conserved oligomeric Gol	0.819	0.587	0.357	1e-61
UNIPROTKB\|Q2TBH9		626	COG8 "Conserved oligomeric Gol	0.819	0.587	0.357	1e-61

TAIR\|locus:2143074 AT5G11980 "AT5G11980" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1799 (638.3 bits), Expect = 1.7e-185, P = 1.7e-185
 Identities = 345/432 (79%), Positives = 377/432 (87%)

Query:     1 MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
             MNQ LLANHSTLLDLLEIPQLMDTCVRNGN+DEALDLEA+V KL+TLHPKLP+IQALAAE
Sbjct:   120 MNQALLANHSTLLDLLEIPQLMDTCVRNGNFDEALDLEAFVSKLATLHPKLPVIQALAAE 179

Query:    61 VXXXXXXXXXXXXXXXRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
             V               RSNIQLPECLRIIGYLRRIGVF EYEMRLQFLRCREAWLTGILE
Sbjct:   180 VRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFGEYEMRLQFLRCREAWLTGILE 239

Query:   121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAH 180
             DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIF+DDTSGSEENYDGGLLFSWAMHQIT+H
Sbjct:   240 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFSDDTSGSEENYDGGLLFSWAMHQITSH 299

Query:   181 LKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLFLKNMST 240
             LKTLK+MLPKITEG SLSNILDQCMYCAMGLG VGLDFRGLLPPLFEEAVL LF KNMST
Sbjct:   300 LKTLKIMLPKITEGGSLSNILDQCMYCAMGLGGVGLDFRGLLPPLFEEAVLNLFSKNMST 359

Query:   241 AVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNE 300
             AVENFQLVLDSHRWVPLP+VG+P+  + E+S++DVTPPSYLMEHPPLAVFINGVS+A+NE
Sbjct:   360 AVENFQLVLDSHRWVPLPSVGFPSSGINEDSKDDVTPPSYLMEHPPLAVFINGVSSALNE 419

Query:   301 LRPCAPLSLKHVLAEELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHC 360
             LRPCAPLSLK+V+A ELIKGLQAVSDSLLRY+TTRMLR +ES LFLSLCRAF+EV +PHC
Sbjct:   420 LRPCAPLSLKNVVAHELIKGLQAVSDSLLRYNTTRMLRLSESNLFLSLCRAFVEVVFPHC 479

Query:   361 ATCFGRCYPGGAALIMDAKSLYDGLGRL----STHSPSRELPKPVNDADGKTITENG--D 414
             ATCFGRCYPGGA ++MDAKS Y+GLGR+    S+  PS + PK ++  D K  +ENG   
Sbjct:   480 ATCFGRCYPGGATIVMDAKSAYEGLGRILAASSSQEPSNKSPKVIS-TDTKDASENGVAS 538

Query:   415 LPVVENGVNPAA 426
              P  +   NP A
Sbjct:   539 QPEEKQAENPNA 550

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB\|F1NSJ6 COG8 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050320-74 cog8 "component of oligomeric golgi complex 8" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|H3BQV3 COG8 "Conserved oligomeric Golgi complex subunit 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96MW5 COG8 "Conserved oligomeric Golgi complex subunit 8" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RA98 COG8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S390 LOC100517220 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

RGD\|1307074 Cog8 "component of oligomeric golgi complex 8" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1N5R4 COG8 "Conserved oligomeric Golgi complex subunit 8" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2TBH9 COG8 "Conserved oligomeric Golgi complex subunit 8" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VI.366.1	hypothetical protein (545 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XIX.851.1	hypothetical protein (317 aa)	•	0.410

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		449
pfam04124		339	pfam04124, Dor1, Dor1-like family	1e-104

>gnl\|CDD\|217912 pfam04124, Dor1, Dor1-like family	Back alignment and domain information

 Score =  312 bits (800), Expect = e-104
 Identities = 122/249 (48%), Positives = 167/249 (67%), Gaps = 7/249 (2%)

Query: 1   MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAE 60
           +N +LL NH  LL+LLE+PQLMDTC+RNG Y EAL+L AY  +L   +   P+IQ++AA+
Sbjct: 92  LNVLLLDNHEQLLELLELPQLMDTCIRNGYYSEALELAAYASRLRQRYSTNPVIQSIAAQ 151

Query: 61  VKQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILE 120
           V++T Q LL QL+Q+LRS +QLPECLR++GYLRR+ V +E E+R +FL+ R+AWL  ILE
Sbjct: 152 VEETVQELLEQLIQQLRSPLQLPECLRVVGYLRRMPVLTEAELRSKFLQSRDAWLEKILE 211

Query: 121 DLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDT-----SGSEENYDGGLLFS-WAM 174
            LD  N Y  LK +I   R++LFD++ QYRAIF D+             +G  +FS W +
Sbjct: 212 ALDTTNPYFLLKRLIEIVRVNLFDILTQYRAIFPDEGSLLRPLADRYKANGDAIFSNWVL 271

Query: 175 HQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF 234
             I++ L+ L+ ML +   GV L ++L QCMY  +  G VG DFR L PPL E  VL+ F
Sbjct: 272 DNISSFLQLLERMLKRG-IGVFLEHVLGQCMYFLLSFGRVGADFRALFPPLLESVVLRRF 330

Query: 235 LKNMSTAVE 243
             N+ TA+E
Sbjct: 331 RTNVETAIE 339

Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35. Length = 339

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		449
KOG2069		581	consensus Golgi transport complex subunit [Intrace	100.0
PF04124		338	Dor1: Dor1-like family ; InterPro: IPR007255 Dor1	100.0
KOG2346		636	consensus Uncharacterized conserved protein [Funct	99.09
PF15469		182	Sec5: Exocyst complex component Sec5	98.75
KOG2215		673	consensus Exocyst complex subunit [Intracellular t	97.92
PF04100		383	Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007	96.47
KOG2347		934	consensus Sec5 subunit of exocyst complex [Intrace	95.49
PF10475		291	DUF2450: Protein of unknown function N-terminal do	92.69
KOG2033		863	consensus Low density lipoprotein B-like protein [	91.07
KOG2069		581	consensus Golgi transport complex subunit [Intrace	86.56
PF10191		766	COG7: Golgi complex component 7 (COG7); InterPro:	86.18
KOG3691		982	consensus Exocyst complex subunit Sec8 [Intracellu	85.21

>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=8.9e-75  Score=600.27  Aligned_cols=372  Identities=45%  Similarity=0.786  Sum_probs=354.3

Q ss_pred             CcHHHHhhhhhhhHHHhcchHHHHHHHcCChhHHHhHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 013106            1 MNQMLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPKLPIIQALAAEVKQTTQSLLSQLLQKLRSNI   80 (449)
Q Consensus         1 ~n~~~L~~~~~L~~LLELP~lldtCIr~g~YeEAL~L~~~~~~l~~~~~~~p~i~~I~~ev~~~~~~Ll~~Ll~~Lr~~l   80 (449)
                      ||+.++.+|+.+++|+|+|++|+.|||+|+|+||+++.+++.|+.++++..|++++|+++|.+.+..|+++|+++|++++
T Consensus       116 ~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~pvi~~i~~~v~~tv~~ll~qL~~~l~~pl  195 (581)
T KOG2069|consen  116 LNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIPVIQEIATEVEQTVQKLLEQLIQQLRTPL  195 (581)
T ss_pred             HHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHhhcCCCChHHHHHHHHHhhHHHHHHHhhhcCccCHHHHHHhhHhHHHhHHHHHHHHHHHhcCCCCCCC
Q 013106           81 QLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGS  160 (449)
Q Consensus        81 ~L~~~~k~V~~LrrL~~~~e~eLr~~FL~~R~~~L~~~L~~l~~~d~~~yl~r~ie~fR~~l~divtqy~aiF~d~~~~~  160 (449)
                      ++++|+|+|+|||||+.|++.+||..||++|++|+.+.+..|+..+++.|++++|++.|.|+|++++||++||+++++.+
T Consensus       196 ~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~~~~~~l~~~i~~~r~~lf~~i~qY~aifpe~~~~~  275 (581)
T KOG2069|consen  196 QLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTNNPYLYLKKTIEIIRVNLFDIITQYLAVFPEDEGDL  275 (581)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999997664


Q ss_pred             CCCCC------cchhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHhhhCcCCCcccccchHHHHHHHHHHH
Q 013106          161 EENYD------GGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKLF  234 (449)
Q Consensus       161 ~~~~~------~~~l~~w~~~~i~~fl~~L~~~L~~i~~~~sLssll~Q~~y~~~SL~rvG~DF~~ll~~lf~~~v~~~~  234 (449)
                      +.+.+      .+++.+|..+++.+|++++..++.+..  .++++|++|||||+.||||+|+|||++++|+|++++.++|
T Consensus       276 n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~--~~l~~vl~~cmyf~~SF~rvg~Dfr~~lap~f~~~vl~~F  353 (581)
T KOG2069|consen  276 NPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI--ESLEHVLGQLMYFALSFGRVGLDFRGLLAPLLECVVLQRF  353 (581)
T ss_pred             CcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh--chHHHHHHHHHHHHHhhccccchhcccccHHHHHHHHHHH
Confidence            43322      358999999999999999999998754  3999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcCcccccCCCCCCCCCCCCCCCCCCCCCccccCchHHHHHHHHHHHHHHhhccCCchhhHHHHH
Q 013106          235 LKNMSTAVENFQLVLDSHRWVPLPAVGYPAHSVGEESQEDVTPPSYLMEHPPLAVFINGVSAAMNELRPCAPLSLKHVLA  314 (449)
Q Consensus       235 ~~~l~~a~~~f~~~L~~~~w~~~~~~~~~s~~~~~~~~~~~~pP~~L~~~~pLa~~~N~~L~alNeLR~cap~~l~~~l~  314 (449)
                      .++++.++++|+..|.+|.|+..+....+.++++.++.+..+||.+|++|||||+|+|+|+.|||+||.|+|++++..++
T Consensus       354 ~knvqe~vEkfq~el~~y~~i~~~a~~~~~~~v~~d~~~~vqpp~~llD~~pla~~lN~I~~a~nelr~c~p~al~~dv~  433 (581)
T KOG2069|consen  354 MKNVEEATEKFELELESYYLIQSVAKVVPENKVIEDSPTDVQPPLSLLDDPPLAEFLNGILSALNELRLCAPLALKEDVV  433 (581)
T ss_pred             hhhHHHHHHHHHHHHHHhhhcccccccCCcccCCCCCCCccCCCchhcccchHHHHHHHHHHHhccccccccHHHHHHHH
Confidence            99999999999999999999998877655555667788899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccccchhHHHHHHHHHHHhHhhHHHHHhhhhcCCchhh
Q 013106          315 EELIKGLQAVSDSLLRYSTTRMLRENESGLFLSLCRAFIEVAYPHCATCFGRCYPGGAAL  374 (449)
Q Consensus       315 ~~L~~~l~~~~~~ll~~~~~~~~~~~e~~~f~~~~~~f~~~~vP~~~~c~~~~~~~~~~~  374 (449)
                      ..|+++++++.+.|++||++.+++++|.++|+++|.+|.++++||+++|++++|||++..
T Consensus       434 ~~l~d~l~kv~~~ila~~~~~~~ssse~e~f~~~c~i~~~dv~P~~~rc~~~~fppa~~~  493 (581)
T KOG2069|consen  434 NTLDDSLQKVEEEILAFHRTEAFSSSENEAFVRLCRIFKEDVVPYEPRCKIRTFPPANKI  493 (581)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhhhccccccceeeecChhhhh
Confidence            999999999999999999999999999999999999999999999999999999998843

>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 []	Back alignment and domain information

>KOG2346 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF15469 Sec5: Exocyst complex component Sec5	Back alignment and domain information

>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events []	Back alignment and domain information

>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known	Back alignment and domain information

>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]	Back alignment and domain information

>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []	Back alignment and domain information

>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		449
2d2s_A		235	Exocyst complex component EXO84; tethering complex	3e-17
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2 Length = 235	Back alignment and structure

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 36/226 (15%), Positives = 84/226 (37%), Gaps = 16/226 (7%)

Query: 15  LLEIPQLMDTCVRNGNYDEALDL----EAYVCKL--STLHPKLPIIQALAAEVKQTTQSL 68
           L E  + +D  +    ++ A++     E+ +  L       +L ++  ++ +++Q  +++
Sbjct: 18  LDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAI 77

Query: 69  LSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQK-NA 127
            S+L Q + S+ ++         + ++G     +    FL+ R  ++  ++  +    N 
Sbjct: 78  SSKLSQSILSSNEIVHLKSGTENMIKLG--LPEQALDLFLQNRSNFIQDLILQIGSVDNP 135

Query: 128 YEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVM 187
             YL  +       +   V  ++ IF +            +L  W   ++  H K +   
Sbjct: 136 TNYLTQLAVIRFQTIKKTVEDFQDIFKELG-----AKISSILVDWCSDEVDNHFKLIDKQ 190

Query: 188 LPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKL 233
           L            +        GL  VGLDF   L    ++   K+
Sbjct: 191 LLNDEM--LSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKI 234

PyMOL of 2d2s

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		449
2d2s_A		235	Exocyst complex component EXO84; tethering complex	99.89

>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2	Back alignment and structure

Probab=99.89  E-value=1.2e-21  Score=188.66  Aligned_cols=213  Identities=17%  Similarity=0.198  Sum_probs=181.7

Q ss_pred             hhhhhhHHHhcchHHHHHHHcCChhHHHhHHHHHHHHHhhCCC------ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013106            8 NHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPK------LPIIQALAAEVKQTTQSLLSQLLQKLRSNIQ   81 (449)
Q Consensus         8 ~~~~L~~LLELP~lldtCIr~g~YeEAL~L~~~~~~l~~~~~~------~p~i~~I~~ev~~~~~~Ll~~Ll~~Lr~~l~   81 (449)
                      ....+.++-+.|..+|.||.+++|+||+++..+.+++....++      .+....|..+++++...|.+.|.+.|....+
T Consensus        11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~~~~   90 (235)
T 2d2s_A           11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNE   90 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             cchhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4567889999999999999999999999999999999887653      5567789999999999999999999987778


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHhhHHHHHHHhhhcC-ccCHHHHHHhhHhHHHhHHHHHHHHHHHhcCCC-CCC
Q 013106           82 LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLD-QKNAYEYLKGMINCHRMHLFDVVNQYRAIFADD-TSG  159 (449)
Q Consensus        82 L~~~~k~V~~LrrL~~~~e~eLr~~FL~~R~~~L~~~L~~l~-~~d~~~yl~r~ie~fR~~l~divtqy~aiF~d~-~~~  159 (449)
                      +.+++++|++|.|||.  ++++|..||++|..+++..++.+. ..|+..|+...+.+|++.+.+++..|.++|++. +.+
T Consensus        91 ~~~~r~~v~~L~rLg~--~~~A~~lfL~~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~  168 (235)
T 2d2s_A           91 IVHLKSGTENMIKLGL--PEQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKI  168 (235)
T ss_dssp             HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred             HHHHHHHHHHHHHCCC--hhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence            9999999999999998  389999999999999999999985 368899999999999999999999999999983 333


Q ss_pred             CCCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHH-HHHHHhhhCcCCCcccccchHHHHHHHH
Q 013106          160 SEENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQ-CMYCAMGLGWVGLDFRGLLPPLFEEAVL  231 (449)
Q Consensus       160 ~~~~~~~~~l~~w~~~~i~~fl~~L~~~L~~i~~~~sLssll~Q-~~y~~~SL~rvG~DF~~ll~~lf~~~v~  231 (449)
                            .+.|+.|+.+++..|..++++++..  ++ ++.+-+.| +.--+..|..+|+||++++..++...+.
T Consensus       169 ------~S~lV~Wa~~eve~f~~l~~rqv~~--~~-~l~~ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~  232 (235)
T 2d2s_A          169 ------SSILVDWCSDEVDNHFKLIDKQLLN--DE-MLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD  232 (235)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHHTTC------CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGG
T ss_pred             ------ccHHHHHHHHHHHHHHHHHHHHccC--Cc-cHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHh
Confidence                  6789999999999999999999974  22 34433333 2223355999999999999998876543

PyMOL of 2d2s

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		449
d2d2sa1		229	a.118.17.2 (A:525-753) Exocyst complex component E	6e-44

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  151 bits (383), Expect = 6e-44
 Identities = 36/226 (15%), Positives = 86/226 (38%), Gaps = 16/226 (7%)

Query: 15  LLEIPQLMDTCVRNGNYDEALDL----EAYVCKLSTLHPKLPI--IQALAAEVKQTTQSL 68
           L E  + +D  +    ++ A++     E+ +  LS       +  +  ++ +++Q  +++
Sbjct: 12  LDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAI 71

Query: 69  LSQLLQKLRSNIQLPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQKNA- 127
            S+L Q + S+ ++         + ++G+    +    FL+ R  ++  ++  +   +  
Sbjct: 72  SSKLSQSILSSNEIVHLKSGTENMIKLGLPE--QALDLFLQNRSNFIQDLILQIGSVDNP 129

Query: 128 YEYLKGMINCHRMHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITAHLKTLKVM 187
             YL  +       +   V  ++ IF +  +         +L  W   ++  H K +   
Sbjct: 130 TNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISS-----ILVDWCSDEVDNHFKLIDKQ 184

Query: 188 LPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVLKL 233
           L         S  +        GL  VGLDF   L    ++   K+
Sbjct: 185 LLNDEMLSPGS--IKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDKI 228

PyMOL of d2d2sa1

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		449
d2d2sa1		229	Exocyst complex component EXO84 {Baker's yeast (Sa	100.0

>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Exocyst complex component
domain: Exocyst complex component EXO84
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-32  Score=259.44  Aligned_cols=215  Identities=16%  Similarity=0.191  Sum_probs=184.7

Q ss_pred             hhhhhhHHHhcchHHHHHHHcCChhHHHhHHHHHHHHHhhCCC------ChHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 013106            8 NHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAYVCKLSTLHPK------LPIIQALAAEVKQTTQSLLSQLLQKLRSNIQ   81 (449)
Q Consensus         8 ~~~~L~~LLELP~lldtCIr~g~YeEAL~L~~~~~~l~~~~~~------~p~i~~I~~ev~~~~~~Ll~~Ll~~Lr~~l~   81 (449)
                      ...+|-||-|.|..||+||++++|+||+++..+++++..+.++      ......|..+|+++.+.|.++|...|+++.+
T Consensus         5 ~~~~~~wl~d~~d~LDv~Ia~~~feeAl~ll~~~e~~l~~~~~~~~~~~~~~~~~i~~kv~~r~~~L~~~L~~~l~~~~~   84 (229)
T d2d2sa1           5 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILSSNE   84 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             HHhhhhhHhcccHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            3568999999999999999999999999999999999877654      2355678899999999999999999999889


Q ss_pred             hhHHHHHHHHHhhcCCCChHHHHHHHHHhhHHHHHHHhhhcCc-cCHHHHHHhhHhHHHhHHHHHHHHHHHhcCCCCCCC
Q 013106           82 LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQ-KNAYEYLKGMINCHRMHLFDVVNQYRAIFADDTSGS  160 (449)
Q Consensus        82 L~~~~k~V~~LrrL~~~~e~eLr~~FL~~R~~~L~~~L~~l~~-~d~~~yl~r~ie~fR~~l~divtqy~aiF~d~~~~~  160 (449)
                      +++|+++|++|+|||..  +++|..||++|+.|+++.+..+.. .+++.||.+++++||+++++|+++|+++|+++.++ 
T Consensus        85 ~~~~~~~v~~L~rLg~~--~~A~~lfL~~rs~~l~~~i~~~~~~~~~~~Yi~~l~~i~f~~i~~t~~~y~aiF~~~~~~-  161 (229)
T d2d2sa1          85 IVHLKSGTENMIKLGLP--EQALDLFLQNRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAK-  161 (229)
T ss_dssp             HHHHHHHHHHHHHTTCH--HHHHHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHH-
T ss_pred             hHHHHHHHHHHHHcCCc--hHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-
Confidence            99999999999999974  789999999999999999998874 58899999999999999999999999999887543 


Q ss_pred             CCCCCcchhhHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHhhhCcCCCcccccchHHHHHHHH
Q 013106          161 EENYDGGLLFSWAMHQITAHLKTLKVMLPKITEGVSLSNILDQCMYCAMGLGWVGLDFRGLLPPLFEEAVL  231 (449)
Q Consensus       161 ~~~~~~~~l~~w~~~~i~~fl~~L~~~L~~i~~~~sLssll~Q~~y~~~SL~rvG~DF~~ll~~lf~~~v~  231 (449)
                          ..+.|+.|+.+++..|+.+++++++...  ...+.-+..+++++.+|+++|+||++++.++|.+.+.
T Consensus       162 ----~sS~lv~Wa~~ei~~f~~~l~r~l~~~~--~~~~~~i~~~~~~c~~L~~vGlDf~~lL~~ll~~~~~  226 (229)
T d2d2sa1         162 ----ISSILVDWCSDEVDNHFKLIDKQLLNDE--MLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSD  226 (229)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHHTTC-----CCHHHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGG
T ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHcccch--hHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHhhHH
Confidence                2467999999999999999999998422  1223323447777789999999999999999987554

PyMOL of d2d2sa1