Citrus Sinensis ID: 013180

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MAETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccEEEEcccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHcccccEEEEccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEEEcccccccHHHHHHHHHHHHHccccccccEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccccccccccccccccccEEEEccccccccccccEEEEcHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccEEEEEcccHHHHHHHHHHHccccEEEEEEcccEEEccHcHHHHHHHcccccHHHHHHHHHHHHHccccEEEEHHHcccHHHHHHHHcccccEEEEcHcccHHHHHHHHHHHHccccEEEEccccccccccEEEEEEcccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccHHHcccccccHccccccccEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccccccccccEEEccccccccEEEEccccccccccEEEEEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIarshsknvpncmthngipaldlLKDEVVAEQLTRNIQFFGvesqqkvsGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNrhavatradvgtpkalclkkhfssifpechiDAKVLlydasseeeilsghpdfvldCIDNIDTKVALLAACVRRGLKVLCatgagaradptriRVADlrestndplsRAVMHRLRKdygieggipvvfslekpkakllpftgpsgedenpsdyqmvpgfrvriipvlgsiPAIFGMVMASHVVTQLAErqvqtepivnmdvdHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHgrsawehsaKDVGRGMWRSVNELMLVRwdrekpatvsNLVLLKFkeadehesrtlddikekepAFFERVTSVLKRAELEFLL
Flexible Loop (DISEMBL)
maetgklkslallgtgavlGSVSTVFLYKLLSRNIArshsknvpncmthNGIPALDLLKDEVVAEQLTRNIQFfgvesqqkvsGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLnrhavatradvgtpkALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLcatgagaradptrirvadlrestndplsravMHRLRKDYGIEGGIPVVFSLEKPKAKLLpftgpsgedenpSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELwhgrsawehsakdvgrgmWRSVNELMLvrwdrekpatvsnlvllkfkeadehesrtlddikekepafFERVTSVLKRAELEFLL
Low Complexity Region (SEG)
MAETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMllrsgvgrlllvDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Disordered region (IsUnstruct)
********SLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD**********RAVMHRLRKDYGIEGGIPVVFSLEK********************YQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFK*******************FFERVT************
Disordered Region (DISOPRED)
******L*SLALLGTGAVLGSVSTVFLY*********************************VVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTG**************PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAE*****************LLHQ*****************VDVEEVMYVAKELWHGRSAWEH**KDVG*GMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Disordered Region (DISEMBL)
MAETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Disordered Region (DISPRO)
**ETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKN*******NGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAETGKLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
O13861	485	Uncharacterized protein C	yes	no	0.772	0.713	0.405	4e-64
P36101	447	Uncharacterized protein Y	yes	no	0.901	0.903	0.356	5e-61
P38756	429	Uncharacterized protein Y	no	no	0.794	0.829	0.304	4e-49
O32037	254	Uncharacterized protein Y	yes	no	0.531	0.937	0.352	2e-30
Q46927	268	Uncharacterized protein Y	N/A	no	0.526	0.880	0.310	1e-27
Q57097	261	Uncharacterized protein H	yes	no	0.533	0.915	0.302	3e-27
B4JBC4	449	Adenylyltransferase and s	N/A	no	0.281	0.280	0.393	2e-16
B4NXF7	453	Adenylyltransferase and s	N/A	no	0.274	0.271	0.370	4e-15
B4LRB9	452	Adenylyltransferase and s	N/A	no	0.274	0.272	0.379	5e-15
B4N7R4	457	Adenylyltransferase and s	N/A	no	0.274	0.269	0.362	6e-15

>sp|O13861|YEXA_SCHPO Uncharacterized protein C1A6.10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC1A6.10 PE=3 SV=1

 Score =  246 bits (627), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/382 (40%), Positives = 228/382 (59%), Gaps = 36/382 (9%)

Query: 51  GIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGR 110
           G+P      + ++ EQL RN  FFG +  +++  S+V+V+G GGVGS    ML RSGV +
Sbjct: 97  GVP----YDENLIREQLARNYAFFGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQK 152

Query: 111 LLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEE 170
           + +VDFDQVS+SSLNRH++AT  DVGTPK L +KK      P   +DA+  L++  S ++
Sbjct: 153 IRIVDFDQVSLSSLNRHSIATLQDVGTPKTLAIKKAIKKFAPWIEVDARNALFNPDSADD 212

Query: 171 ILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDP 230
           +LSG+PDFV+D IDNI TKV LL+ C    L V+ +TG+  ++DPTR+ +AD+  ++ DP
Sbjct: 213 LLSGNPDFVIDAIDNIQTKVDLLSYCYNHKLPVIASTGSACKSDPTRVNIADISATSEDP 272

Query: 231 LSRAVMHRLRKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVR 287
           LSRA   RLR   GI  GIPVVFS EKP   KA LLP +    E  +  +   +P FR R
Sbjct: 273 LSRATRRRLRL-LGIMEGIPVVFSTEKPDPRKASLLPLSEEEFEKGDVDELSALPEFRAR 331

Query: 288 IIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHE-ESLYGT 346
           I+PV+G +P IFG+ +A++V+T +A+  +  +PI  M          RL E   + L+  
Sbjct: 332 ILPVIGPMPGIFGLTIATYVLTSIAKYPM--DPISTM-------TRPRLYEEAVKRLHAE 382

Query: 347 AKEVQVDVE------EVMYVAKELWHGRSAW-EHSAKDVGRGMWRSVNELMLVRWDREKP 399
           A++  V+++      E+ Y+ +E++ GRSA   H ++ V            +VRW+ + P
Sbjct: 383 ARKAGVNLDKTFNASEMSYIIEEVYVGRSALPPHESQKV-----------TVVRWNPQLP 431

Query: 400 ATVSNLVLLKFKEADEHESRTL 421
              +NLV +   EA  HE   L
Sbjct: 432 FDHTNLVAMTRNEARYHEDNVL 453

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P36101|YKC7_YEAST Uncharacterized protein YKL027W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL027W PE=1 SV=1

 Score =  235 bits (600), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 152/426 (35%), Positives = 239/426 (56%), Gaps = 22/426 (5%)

Query: 3   ETGKLKSLALLGTGAVLGSVSTVFL-YKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDE 61
           +T KL +   L T AV       +  ++   + IA+  +KN     T +         ++
Sbjct: 5   DTWKLITATALFTVAVTTITDYAWTSWQAQKQVIAQQKNKN-KGGQTKSDTDKYHQYDEQ 63

Query: 62  VVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV 121
            + + L  N++F G ++ +K+S  YVVV+G GGVGS     L+RSG  ++ +VDFDQVS+
Sbjct: 64  FIRQSLKNNVEFLGEDTIEKLSNQYVVVVGAGGVGSWVVNSLVRSGCRKIRVVDFDQVSL 123

Query: 122 SSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEIL--SGHPDFV 179
           SSLNRH+ A   DVGTPK  CL++H   I P C ID    L+   + E +   +G PDF+
Sbjct: 124 SSLNRHSCAILNDVGTPKVECLRRHMREIAPWCEIDPINELWTLQNGERLTLGNGTPDFI 183

Query: 180 LDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRL 239
           +DCIDNIDTKV LL      G+KV+ + GA A++DPT++ V DL  +  DPL+R V  +L
Sbjct: 184 VDCIDNIDTKVDLLEFAYNHGIKVISSMGASAKSDPTKLNVGDLATTEEDPLARVVRRKL 243

Query: 240 RKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIP 296
           +K  GI  GIPVVFS EKP   KAKLLP      E     +   +  FRVRI+PVLG++P
Sbjct: 244 KK-RGILSGIPVVFSAEKPDPKKAKLLPLPDEEYERGKVDELSALKDFRVRILPVLGTMP 302

Query: 297 AIFGMVMASHVVTQLAERQVQTEPIVNMD-VDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
           ++FG+ + + +++ ++++ +  EP+   + +  Y  ++Q L      +   ++ + + ++
Sbjct: 303 SLFGLTITTWILSNISDKPL--EPVEGKNRIKVYDGIYQSLAGQMSRVGIPSQRIPLALK 360

Query: 356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
           +V Y+ +E++ G+S     +             L L +WD  KP ++ N+V+L   E   
Sbjct: 361 DVSYLVEEVFKGKSPISGIS-----------TRLTLTKWDPSKPISLQNVVVLTKNEQKV 409

Query: 416 HESRTL 421
           HE R L
Sbjct: 410 HEDRVL 415

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P38756|YHG3_YEAST Uncharacterized protein YHR003C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR003C PE=1 SV=1

 Score =  196 bits (497), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 121/397 (30%), Positives = 209/397 (52%), Gaps = 41/397 (10%)

Query: 60  DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119
           D +  EQL RN  F G E  +K+   Y+V++G G VGS    ML+RSG  +++++D + +
Sbjct: 50  DHLFREQLARNYAFLGEEGMRKIKEQYIVIVGAGEVGSWVCTMLIRSGCQKIMIIDPENI 109

Query: 120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG---HP 176
           S+ SLN H  A  +D+G PK  CLK+H S I P   I A+   +   +  +++      P
Sbjct: 110 SIDSLNTHCCAVLSDIGKPKVQCLKEHLSKIAPWSEIKARAKAWTKENSHDLIFADGESP 169

Query: 177 DFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM 236
            F++DC+DN+++KV LL       + V+ + G   ++DPTR+ + D+  +  DP+SR V 
Sbjct: 170 TFIVDCLDNLESKVDLLEYAHHNKIDVISSMGVATKSDPTRVSINDISMTEFDPISRCVR 229

Query: 237 HRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFR---VRIIPVLG 293
            +LRK  GI  GI VVFS E    +      P        +++ +   R   +R +P LG
Sbjct: 230 RKLRK-RGIATGISVVFSNEMLDPRRDDILSPID-----CEHRAINAVRDEALRHLPELG 283

Query: 294 SIPAIFGMVMASHVVTQLAERQVQTEPIVNM------DVDHYRLLHQRLTEHEE--SLYG 345
           ++P IFG+ +A+ ++T+++   ++   + N        ++ ++    RL E++E  SL G
Sbjct: 284 TMPGIFGLSIATWILTKVSGYPMKENEVKNRLKFYDSILETFQKQMARLNENKERSSLLG 343

Query: 346 TAKEVQVDVEEVMYVAKELWHGRSAWE-HSAKDVGRGMWRSVNELMLVRWDREKPATVSN 404
                   +EEV Y+ +E++ G+S    +S K            L L +W+  K  +++N
Sbjct: 344 --------LEEVGYIVEEMFRGKSPISGYSTK------------LALTKWEANKEISLTN 383

Query: 405 LVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKR 441
           +VL+  +E + HE R L D ++    + E V   ++R
Sbjct: 384 VVLMTKEEQEIHEKRILLDGEKLTAVYSEEVLDFIER 420

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O32037|YRVM_BACSU Uncharacterized protein YrvM OS=Bacillus subtilis (strain 168) GN=yrvM PE=3 SV=3

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/247 (35%), Positives = 135/247 (54%), Gaps = 9/247 (3%)

Query: 66  QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLN 125
           Q +RN    G E  + +  S V V+G+GGVGS AA  L RSGVGR+LLVD D V ++++N
Sbjct: 4   QFSRNELAIGKEGLETLKNSTVAVLGVGGVGSFAAEALARSGVGRILLVDKDDVDITNVN 63

Query: 126 RHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN 185
           R   A  + VG PK   +K   + I PEC + A  + Y   + E+      D+V+D  D 
Sbjct: 64  RQLHALLSTVGQPKVDLMKARIADINPECEVIALKMFYTEETYEQFFDYGLDYVIDASDT 123

Query: 186 IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI 245
           I  K+ L+  C++R + ++ + GA  + DPTR ++AD+ ++  DP+++ V  +LRK+ GI
Sbjct: 124 ICYKIHLMKECLKRDIPLISSMGAANKTDPTRFQIADISKTHTDPIAKVVRTKLRKE-GI 182

Query: 246 EGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS-IPAIFGMVMA 304
           + G+ V+FS E P           G DE       +P       P   + +P++ G++M 
Sbjct: 183 KKGVQVIFSDESPIVIREDVRKEVGNDEAKIRKAKMP-------PSSNAFVPSVAGLIMG 235

Query: 305 SHVVTQL 311
            HVV  L
Sbjct: 236 GHVVMDL 242

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q46927|YGDL_ECOLI Uncharacterized protein YgdL OS=Escherichia coli (strain K12) GN=ygdL PE=3 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/258 (31%), Positives = 131/258 (50%), Gaps = 22/258 (8%)

Query: 72  QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT 131
           + +G ++ Q  + +++ V+G+GGVGS AA  L R+G+G + L+D D V V++ NR   A 
Sbjct: 18  RLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHAL 77

Query: 132 RADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA 191
           R +VG  KA  + +    I PEC +          +  + +S    +V+D ID++  K A
Sbjct: 78  RDNVGLAKAEVMAERIRQINPECRVTVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAA 137

Query: 192 LLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI------ 245
           L+A C R  + ++   GAG + DPT+I+V DL ++  DPL+  +  RL+ D+G+      
Sbjct: 138 LIAYCRRNKIPLVTTGGAGGQIDPTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKG 197

Query: 246 EGGIPVVFSLEKPKAKLLPFTGPS-----GEDENPSDYQMVPGFRVRIIPVLGSIPAIFG 300
           + G+  VFS E   A + P +  +        E P       GF    +     + A FG
Sbjct: 198 KLGVDCVFSTE---ALVYPQSDGTVCAMKATAEGPKRMDCASGFGAATM-----VTATFG 249

Query: 301 MVMASHVVTQL---AERQ 315
            V  SH + ++   A RQ
Sbjct: 250 FVAVSHALKKMMAKAARQ 267

Escherichia coli (strain K12) (taxid: 83333)

>sp|Q57097|Y118_HAEIN Uncharacterized protein HI_0118 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0118 PE=3 SV=1

 Score =  123 bits (308), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 122/245 (49%), Gaps = 6/245 (2%)

Query: 72  QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT 131
           + +  +S  ++  +++ VIG+GGVGS     L RSG+G L L+D D + V+++NR   A 
Sbjct: 21  RLYTPDSLARLRQAHICVIGIGGVGSWVVEALARSGIGELTLIDMDDICVTNINRQLPAM 80

Query: 132 RADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA 191
              +G  K   + +    I PEC ++         ++ + L+   D+V+D IDN+ TK +
Sbjct: 81  SGTIGKLKTEVMSERVKLINPECTVNIIDDFISPENQSDYLNRGYDYVIDAIDNVKTKAS 140

Query: 192 LLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPV 251
           L+A C R  + V+   GAG + DPT+I++ADL ++  DPL   V   LRKDY        
Sbjct: 141 LIAYCKRNKINVITIGGAGGQTDPTQIQIADLSKTIQDPLLAKVRSVLRKDYNFSQNPKR 200

Query: 252 VFSLEKP-KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQ 310
            FS++     + L F   +      +      GF    +     I A FG    S V+ +
Sbjct: 201 KFSIDAVFSTQPLIFPQMTEGCSTSATMNCANGFGAATM-----ITATFGFFAVSRVIDK 255

Query: 311 LAERQ 315
           L +++
Sbjct: 256 LLKKK 260

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

>sp|B4JBC4|MOCS3_DROGR Adenylyltransferase and sulfurtransferase MOCS3 OS=Drosophila grimshawi GN=GH10959 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           FG+  Q K+  S V+++G+GG+G  AA  L  +G G L LVD+DQV  S+L+R  + T A
Sbjct: 76  FGIGGQLKLKNSAVLIVGIGGLGCPAAQYLAGAGCGSLGLVDYDQVERSNLHRQTLHTVA 135

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
             G  KA   +     + P CHI     L +  +  +I+ G+ D VLDC DN+ T+  L 
Sbjct: 136 RCGLSKAESARIALLELNPHCHITCHASLLNRFNAMDIMHGY-DVVLDCSDNVATRYLLN 194

Query: 194 AACVRRG 200
            ACV  G
Sbjct: 195 DACVMLG 201

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Drosophila grimshawi (taxid: 7222)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B4NXF7|MOCS3_DROYA Adenylyltransferase and sulfurtransferase MOCS3 OS=Drosophila yakuba GN=GE18783 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/124 (37%), Positives = 69/124 (55%), Gaps = 1/124 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           FGV+ Q K+  S V+++GLGG+G  AA  L  +G GRL L+D+D+V  S+ +R  + + +
Sbjct: 81  FGVQGQLKLKNSSVLIVGLGGLGCPAAQYLAAAGCGRLGLIDYDEVERSNFHRQILHSES 140

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
             G  KA   +     + P C I     L  + +   I+ G+ D VLDC DN+ T+  L 
Sbjct: 141 RCGMSKAESARIALLELNPHCEIHCHSRLLYSQNALHIIRGY-DVVLDCSDNVPTRYLLS 199

Query: 194 AACV 197
            ACV
Sbjct: 200 DACV 203

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Drosophila yakuba (taxid: 7245)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B4LRB9|MOCS3_DROVI Adenylyltransferase and sulfurtransferase MOCS3 OS=Drosophila virilis GN=GJ21670 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           FGV  Q K+  S V+++GLGG+G  AA  L  +G G L LVD+D+V  S+L+R  + T A
Sbjct: 79  FGVSGQLKLKNSAVLIVGLGGLGCPAAQYLCSAGCGNLGLVDYDEVERSNLHRQTLHTVA 138

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
             G  K    +     + P C I     L ++S+   I+  + D VLDC DN+ T+  L 
Sbjct: 139 RCGMSKTESARIALLELNPHCRITCYPRLLNSSNAMHIMRAY-DIVLDCSDNVATRYLLN 197

Query: 194 AACV 197
            AC 
Sbjct: 198 DACT 201

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Drosophila virilis (taxid: 7244)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

>sp|B4N7R4|MOCS3_DROWI Adenylyltransferase and sulfurtransferase MOCS3 OS=Drosophila willistoni GN=GK18675 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 68/124 (54%), Gaps = 1/124 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           FGV+ Q ++  S V+++G+GG+G  AA  L  +GVG L L+D+DQV  S+ +R  + T A
Sbjct: 82  FGVQGQLRLKNSSVLIVGMGGLGCPAAQYLAAAGVGYLGLIDYDQVERSNFHRQTLHTEA 141

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
             G  K    +     + P C I     L ++ +   I+  + D VLDC DN+ T+  L 
Sbjct: 142 RCGMAKTESARIALLELNPSCRIHCHSELINSHNASNIMRSY-DVVLDCSDNVATRYLLN 200

Query: 194 AACV 197
            ACV
Sbjct: 201 DACV 204

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). Also essential during biosynthesis of the molybdenum cofactor. Acts by mediating the C-terminal thiocarboxylation of sulfur carriers URM1 and MOCS2A. Its N-terminus first activates URM1 and MOCS2A as acyl-adenylates (-COAMP), then the persulfide sulfur on the catalytic cysteine is transferred to URM1 and MOCS2A to form thiocarboxylation (-COSH) of their C-terminus. The reaction probably involves hydrogen sulfide that is generated from the persulfide intermediate and that acts as nucleophile towards URM1 and MOCS2A. Subsequently, a transient disulfide bond is formed. Does not use thiosulfate as sulfur donor; NFS1 probably acting as a sulfur donor for thiocarboxylation reactions.

Drosophila willistoni (taxid: 7260)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
359483167	465	PREDICTED: uncharacterized protein C1A6.	0.988	0.952	0.770	0.0
356552007	488	PREDICTED: uncharacterized protein C1A6.	0.968	0.889	0.772	0.0
449432285	464	PREDICTED: uncharacterized protein C1A6.	0.986	0.952	0.765	0.0
255582284	410	molybdopterin biosynthesis moeb protein,	0.872	0.953	0.869	0.0
356499081	488	PREDICTED: uncharacterized protein C1A6.	0.984	0.903	0.737	0.0
357491931	459	hypothetical protein MTR_5g077840 [Medic	0.984	0.960	0.758	0.0
297801284	456	thiF family protein [Arabidopsis lyrata	0.984	0.967	0.762	0.0
145334657	456	Rossmann-fold NAD(P)-binding domain-cont	0.984	0.967	0.764	0.0
42568166	457	Rossmann-fold NAD(P)-binding domain-cont	0.984	0.964	0.765	0.0
10177437	414	unnamed protein product [Arabidopsis tha	0.872	0.944	0.826	0.0

>gi|359483167|ref|XP_002263272.2| PREDICTED: uncharacterized protein C1A6.10-like [Vitis vinifera] gi|298204697|emb|CBI25195.3| unnamed protein product [Vitis vinifera]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/462 (77%), Positives = 393/462 (85%), Gaps = 19/462 (4%)

Query: 6   KLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSK---------------NVPNCMT-- 48
           +LK +AL+G GA+LGSVST+FL KLL R +    S                 + NC    
Sbjct: 4   RLKCMALVGGGALLGSVSTLFLLKLLRRKLESQCSSVKAIEFDGKEFKAAPTIKNCKVVE 63

Query: 49  --HNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRS 106
               G+   DLLKDE+V+EQLTRNIQFFG+E QQKV+ SYVV+IGLGGVGSHAA+MLLRS
Sbjct: 64  DRDGGMDGQDLLKDEIVSEQLTRNIQFFGLEFQQKVTASYVVIIGLGGVGSHAASMLLRS 123

Query: 107 GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166
           GVGRLLLVDFDQVS+SSLNRHAVATR DVG PKA CLKKHFS+IFPEC IDA+VLLYDAS
Sbjct: 124 GVGRLLLVDFDQVSLSSLNRHAVATREDVGIPKAQCLKKHFSAIFPECQIDARVLLYDAS 183

Query: 167 SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRES 226
           SEE+ILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL ATGAGARADPTRIRVADLRES
Sbjct: 184 SEEDILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLSATGAGARADPTRIRVADLRES 243

Query: 227 TNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRV 286
           TNDPLSR+V HRLRKDYGIEGGIPVVFSLEKPK KLLPF G +GE+ENPSDYQ+VPGFRV
Sbjct: 244 TNDPLSRSVRHRLRKDYGIEGGIPVVFSLEKPKVKLLPFKGSNGEEENPSDYQIVPGFRV 303

Query: 287 RIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGT 346
           RIIPVLG+IPAIFG +MAS+VVTQLA  QV TEP+VN+D DHY +LHQRL EHEE LYGT
Sbjct: 304 RIIPVLGTIPAIFGQIMASYVVTQLAGFQVHTEPVVNLDTDHYHILHQRLIEHEELLYGT 363

Query: 347 AKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLV 406
           A +VQVDV EVMY+ K+LW GRSA E S + VGRGMWRSVNELMLVRWD+ KPA+VSNL+
Sbjct: 364 AMQVQVDVAEVMYIVKDLWRGRSAREQSIEHVGRGMWRSVNELMLVRWDQRKPASVSNLI 423

Query: 407 LLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL 448
           LLKFKEADEHESRTLDDIKEKEP +F RVTSVLKRAEL+F L
Sbjct: 424 LLKFKEADEHESRTLDDIKEKEPEYFNRVTSVLKRAELDFGL 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552007|ref|XP_003544363.1| PREDICTED: uncharacterized protein C1A6.10-like [Glycine max]

 Score =  697 bits (1799), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/457 (77%), Positives = 389/457 (85%), Gaps = 23/457 (5%)

Query: 8   KSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTH-----NGIPAL------- 55
           K LAL+G GA+LGSVST FL +LL     +S  + V  C  +     NG+          
Sbjct: 5   KYLALVGGGALLGSVSTFFLLRLL-----QSQKRGVSQCSKNVTADFNGVEGCTIAGKKN 59

Query: 56  ------DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVG 109
                 DLLKDE+V+EQLTRN+QFFG ESQQKV+ SYVVVIGLGGVGSHAA+MLLRSG+G
Sbjct: 60  DRVINEDLLKDEIVSEQLTRNVQFFGFESQQKVTASYVVVIGLGGVGSHAASMLLRSGIG 119

Query: 110 RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEE 169
           +LLLVDFDQVSVSSLNRHAVATRADVG  KA CLK+HF SIFPEC IDAKV+LYD+S+EE
Sbjct: 120 KLLLVDFDQVSVSSLNRHAVATRADVGISKAQCLKEHFLSIFPECQIDAKVMLYDSSTEE 179

Query: 170 EILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTND 229
           EILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL ATGAGARADPTRIR+ADLRESTND
Sbjct: 180 EILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLSATGAGARADPTRIRIADLRESTND 239

Query: 230 PLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII 289
           PLSRAV HRLRKDYGIEGGIPVVFSLEKPKAKLLPF GPSGE+ENPSDYQ+VPGFRVRII
Sbjct: 240 PLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLPFKGPSGEEENPSDYQIVPGFRVRII 299

Query: 290 PVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKE 349
           PVLG+IPAIFG  MAS+VVT+LA   VQTEP+VN ++DHY +LHQRL EHEESLYGT  E
Sbjct: 300 PVLGTIPAIFGQFMASYVVTELAGVHVQTEPVVNFNMDHYHILHQRLIEHEESLYGTYME 359

Query: 350 VQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLK 409
           VQVDVEEVMY+ KELWHGRSA E   KDVGRGMWRSVNELMLVRWDR KPA++SNL+LLK
Sbjct: 360 VQVDVEEVMYIVKELWHGRSAREQHVKDVGRGMWRSVNELMLVRWDRTKPASISNLILLK 419

Query: 410 FKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           FKE DEHESRTLDDIK+ EP F+ RV +VLKRAEL+F
Sbjct: 420 FKEVDEHESRTLDDIKKNEPEFYSRVIAVLKRAELDF 456

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432285|ref|XP_004133930.1| PREDICTED: uncharacterized protein C1A6.10-like [Cucumis sativus] gi|449480023|ref|XP_004155778.1| PREDICTED: uncharacterized protein C1A6.10-like [Cucumis sativus]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/460 (76%), Positives = 390/460 (84%), Gaps = 18/460 (3%)

Query: 5   GKLKSLALLGTGAVLGSVSTVFLYKLLSRNIA----------RSHSKNVPNCM------- 47
           GK KSL+L+G GA+ GSVST F+ KLL R IA          R +   V   +       
Sbjct: 3   GKFKSLSLVGAGALFGSVSTFFILKLLHRQIADHAESKATKLRGNENMVETTVKGSPVVG 62

Query: 48  -THNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRS 106
            T+ G+  +DLL DE+V+EQLTRNIQFFG+ SQ+ V+ SYVVVIGLGGVGSHAA MLLRS
Sbjct: 63  CTNRGLSDVDLLTDEIVSEQLTRNIQFFGLSSQKNVTASYVVVIGLGGVGSHAAMMLLRS 122

Query: 107 GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166
           GVGRLLLVDFDQVS+SSLNRHAVATRADVG  KA CLK+HF SIFPEC ++AKVLLYDA+
Sbjct: 123 GVGRLLLVDFDQVSLSSLNRHAVATRADVGISKAQCLKEHFLSIFPECQVEAKVLLYDAT 182

Query: 167 SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRES 226
           SEEEILSG PDFVLDCIDNI TKV+LLAACVRRGLKVL ATGAGARADPTRIRVADLRES
Sbjct: 183 SEEEILSGKPDFVLDCIDNIHTKVSLLAACVRRGLKVLSATGAGARADPTRIRVADLRES 242

Query: 227 TNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRV 286
           T DPLSR+V HRLRK YGIEGGIPVVFSLEKPKAKLLPF GPSGE ENPSDYQ+ PGFRV
Sbjct: 243 TIDPLSRSVRHRLRKGYGIEGGIPVVFSLEKPKAKLLPFQGPSGEAENPSDYQITPGFRV 302

Query: 287 RIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGT 346
           RIIPVLG+IPAIFG VMAS+VVTQLA  QV TEP++N+D DHY+LLHQRL EHEESLYGT
Sbjct: 303 RIIPVLGTIPAIFGQVMASYVVTQLAGLQVDTEPVINLDSDHYKLLHQRLIEHEESLYGT 362

Query: 347 AKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLV 406
           A EVQVD+EEVM+VAKELWHGRSA E SA+DVGRG+WR++NELMLVRWDR KPA+VSNL+
Sbjct: 363 AMEVQVDLEEVMFVAKELWHGRSAREQSARDVGRGLWRAINELMLVRWDRAKPASVSNLI 422

Query: 407 LLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           LLKF EADEHES TLDDIKE EP FF RVT+ LKRAEL+F
Sbjct: 423 LLKFNEADEHESSTLDDIKENEPEFFRRVTATLKRAELDF 462

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582284|ref|XP_002531933.1| molybdopterin biosynthesis moeb protein, putative [Ricinus communis] gi|223528412|gb|EEF30447.1| molybdopterin biosynthesis moeb protein, putative [Ricinus communis]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/391 (86%), Positives = 368/391 (94%)

Query: 56  DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115
           DLL DE+VAE LTRNIQFFG+ESQ+KV+ SYVVVIGLGGVGSHAA+MLLRSG+GRLLLVD
Sbjct: 20  DLLTDEIVAEHLTRNIQFFGLESQRKVTASYVVVIGLGGVGSHAASMLLRSGIGRLLLVD 79

Query: 116 FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGH 175
           FDQVS+SSLNRHAVATRADVG PKA CLKKHFS+IFPECHI+AKVLLYDASSEEEILSG+
Sbjct: 80  FDQVSLSSLNRHAVATRADVGIPKAECLKKHFSTIFPECHIEAKVLLYDASSEEEILSGN 139

Query: 176 PDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235
           PDFVLDCIDNIDTKVALLAAC+RRGLKVL ATGAGARADPTRIRVADL+ESTNDPLSR+V
Sbjct: 140 PDFVLDCIDNIDTKVALLAACMRRGLKVLSATGAGARADPTRIRVADLKESTNDPLSRSV 199

Query: 236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI 295
            HRLRKDYGI+GGIPVVFSLEKPK KLLPF GPSGE++NPS+YQ+VPGFRVRIIPVLG+I
Sbjct: 200 RHRLRKDYGIDGGIPVVFSLEKPKVKLLPFKGPSGEEDNPSNYQIVPGFRVRIIPVLGTI 259

Query: 296 PAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
           P+IFG VMAS+VVTQLA  QVQTEP+VN D+DHYR+LHQRL EHEESLYGT  EVQVD+E
Sbjct: 260 PSIFGQVMASYVVTQLAGFQVQTEPVVNFDLDHYRVLHQRLIEHEESLYGTTMEVQVDIE 319

Query: 356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
           EV YVAKELWHGRSA E SAKDVGRGMWRS+NELMLVRWDR KPA VSNLVLLKF+EADE
Sbjct: 320 EVKYVAKELWHGRSAREQSAKDVGRGMWRSINELMLVRWDRTKPACVSNLVLLKFQEADE 379

Query: 416 HESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           HESRTLDDIKE EP FFERVTSVLKRAEL+F
Sbjct: 380 HESRTLDDIKENEPEFFERVTSVLKRAELDF 410

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499081|ref|XP_003518372.1| PREDICTED: uncharacterized protein C1A6.10-like [Glycine max]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/484 (73%), Positives = 393/484 (81%), Gaps = 43/484 (8%)

Query: 8   KSLALLGTGAVLGSVSTVFLYKLL-SRN-------IARSHS-----------------KN 42
           K LAL+G GA+LGSVST FL +LL S+N       +  S+S                 + 
Sbjct: 5   KYLALVGGGALLGSVSTFFLLRLLQSQNLTERDGLVGSSYSTFGSLRQRDIFILYGVRRG 64

Query: 43  VPNCMTH-----NGIPAL-------------DLLKDEVVAEQLTRNIQFFGVESQQKVSG 84
           V  C  +     NG+                DLLKDE+V+EQLTRNIQFFG ESQQKV+ 
Sbjct: 65  VSQCSKNVTADFNGVDGCTIARMKIDRVVNEDLLKDEIVSEQLTRNIQFFGFESQQKVTA 124

Query: 85  SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144
           SYVVVIGLGGVGSHAA+MLLRSG+G+LLLVDFDQVS+SSLNRHAVATRADVG  KA CL+
Sbjct: 125 SYVVVIGLGGVGSHAASMLLRSGIGKLLLVDFDQVSLSSLNRHAVATRADVGISKAQCLE 184

Query: 145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL 204
           +HFSSIFPEC I AKVLLYD+S+EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL
Sbjct: 185 EHFSSIFPECQIVAKVLLYDSSTEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL 244

Query: 205 CATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLP 264
            ATGAGARADPTRIR+ADLRESTNDPLSRAV HRLRKDYGIEGGIPVVFSLEKPKAKLLP
Sbjct: 245 SATGAGARADPTRIRIADLRESTNDPLSRAVRHRLRKDYGIEGGIPVVFSLEKPKAKLLP 304

Query: 265 FTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNM 324
           F G SGE+ENPSDYQ+VPGFRVRIIPVLG+IPAIFG  MAS VVT+LA   VQTEP+VN 
Sbjct: 305 FKGTSGEEENPSDYQIVPGFRVRIIPVLGTIPAIFGQFMASFVVTELAGVHVQTEPVVNF 364

Query: 325 DVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWR 384
           D+DHY  LHQRL EHEESLYGT+ EVQVDVEEVMY+ KELWHGRSA E   KDVGRGMWR
Sbjct: 365 DMDHYHTLHQRLIEHEESLYGTSMEVQVDVEEVMYIVKELWHGRSAREQHVKDVGRGMWR 424

Query: 385 SVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKRAEL 444
           SVNELMLVRWDR KPA++SNL+LLKFKE DEHESRTL+DIKE EP F  RV++VLKRAEL
Sbjct: 425 SVNELMLVRWDRTKPASISNLILLKFKEVDEHESRTLEDIKENEPEFHSRVSAVLKRAEL 484

Query: 445 EFLL 448
           +F L
Sbjct: 485 DFGL 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491931|ref|XP_003616253.1| hypothetical protein MTR_5g077840 [Medicago truncatula] gi|355517588|gb|AES99211.1| hypothetical protein MTR_5g077840 [Medicago truncatula]

 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/455 (75%), Positives = 386/455 (84%), Gaps = 14/455 (3%)

Query: 8   KSLALLGTGAVLGSVSTVFLYKLLS---RNIARSHSKN-------VPNCM----THNGIP 53
           K L L+G GA+LGS+ST FL KLL    R + +  ++N       V  C         + 
Sbjct: 5   KCLVLIGGGALLGSLSTFFLLKLLQTQKRGLRQQCNENATAELNGVDRCAIAGKKSGKVV 64

Query: 54  ALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLL 113
           + DLLKDE+V+EQLTRNIQFFG ESQQKVS SYVVVIGLGGVGSHAA+MLLRSG+G+LLL
Sbjct: 65  SDDLLKDEIVSEQLTRNIQFFGFESQQKVSASYVVVIGLGGVGSHAASMLLRSGIGKLLL 124

Query: 114 VDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILS 173
           VDFDQVS+SSLNRHAVATRADVG  KA CLK+HFSSIFPEC IDAKV+LYD+S+EEEILS
Sbjct: 125 VDFDQVSLSSLNRHAVATRADVGISKAQCLKEHFSSIFPECQIDAKVMLYDSSTEEEILS 184

Query: 174 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233
           GHPDFVLDCIDNIDTKVALLAACVRRGLKVL ATGAGARADPTRIR+ADLRESTNDPLSR
Sbjct: 185 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLSATGAGARADPTRIRIADLRESTNDPLSR 244

Query: 234 AVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG 293
           +V HRLRKD+GI+GGIPVVFSLEKPK KLLPF G SGE+ENPSDYQ+VPGFRVRIIPVLG
Sbjct: 245 SVRHRLRKDHGIDGGIPVVFSLEKPKVKLLPFKGSSGEEENPSDYQIVPGFRVRIIPVLG 304

Query: 294 SIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVD 353
           +IPAIFG VMAS+V+T LA   VQTEP+VN D+DHY +LHQRL EHEE+LYGT+  VQVD
Sbjct: 305 TIPAIFGQVMASYVLTDLAGLHVQTEPVVNFDMDHYHILHQRLIEHEETLYGTSMHVQVD 364

Query: 354 VEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEA 413
            EEV Y+AKELWHGRSA E  AKDVGR MWRSVNELMLVRWD  KPA++SNL+LLKF E 
Sbjct: 365 AEEVKYIAKELWHGRSAREQVAKDVGRAMWRSVNELMLVRWDSTKPASISNLILLKFNEV 424

Query: 414 DEHESRTLDDIKEKEPAFFERVTSVLKRAELEFLL 448
           DEHESRTLDD+KEKEP F+ RV +VLKRAE +F L
Sbjct: 425 DEHESRTLDDVKEKEPEFYSRVIAVLKRAENDFGL 459

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297801284|ref|XP_002868526.1| thiF family protein [Arabidopsis lyrata subsp. lyrata] gi|297314362|gb|EFH44785.1| thiF family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  676 bits (1743), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/451 (76%), Positives = 399/451 (88%), Gaps = 10/451 (2%)

Query: 6   KLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPA----------L 55
           KLK L+L+G GA++GSVSTV L KLLSR   +   +N       NGI +           
Sbjct: 4   KLKYLSLVGAGALIGSVSTVALLKLLSRTSLKQLKENPETNFLGNGIESETRPVTVAVGQ 63

Query: 56  DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115
           DLLKDE+V+E LTRNIQFFG+ESQ+KV+GSYVVVIGLGGVGSHA++MLLRSGV +LLLVD
Sbjct: 64  DLLKDEIVSEHLTRNIQFFGLESQRKVTGSYVVVIGLGGVGSHASSMLLRSGVAKLLLVD 123

Query: 116 FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGH 175
           FDQVS+SSLNRHAVATRADVG PKA+CLKKHFSSIFPEC I+AKV+LYD+SSEEEILSG+
Sbjct: 124 FDQVSLSSLNRHAVATRADVGIPKAICLKKHFSSIFPECRIEAKVMLYDSSSEEEILSGN 183

Query: 176 PDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235
           PDFVLDCIDNIDTKV LLAACV+RGLKVL ATGAGARADPTRIRVAD+REST DPLSR+V
Sbjct: 184 PDFVLDCIDNIDTKVGLLAACVKRGLKVLSATGAGARADPTRIRVADIRESTIDPLSRSV 243

Query: 236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI 295
            HRLR+++GIEGGIPVVFSLEKPKAKLLPF GP+GEDENPSDYQ+VPGFRVRIIPVLG+I
Sbjct: 244 RHRLRREHGIEGGIPVVFSLEKPKAKLLPFKGPNGEDENPSDYQVVPGFRVRIIPVLGTI 303

Query: 296 PAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
           PAIFG +MAS+V+TQLA  QVQ EPIVN+D+DHYRLLHQRL EHEE++YGT+ EV+VDVE
Sbjct: 304 PAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQRLIEHEETVYGTSAEVEVDVE 363

Query: 356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
           EVMY+ KELWHGRSA + +AKDVGRGMWR++NELML+RWD +KPATVSNL+LLKFKEADE
Sbjct: 364 EVMYIVKELWHGRSARDETAKDVGRGMWRAMNELMLIRWDAKKPATVSNLILLKFKEADE 423

Query: 416 HESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           HE++TL+++KE E  FFERV+ VLK+AEL+F
Sbjct: 424 HEAKTLEEVKESETEFFERVSCVLKKAELDF 454

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334657|ref|NP_001078674.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332006820|gb|AED94203.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/451 (76%), Positives = 397/451 (88%), Gaps = 10/451 (2%)

Query: 6   KLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPA----------L 55
           K K L+L+G GA++GS+STV L KLLSR+  +  ++N       NGI +           
Sbjct: 4   KSKYLSLVGAGALIGSISTVALLKLLSRSSLKQLNENPETNFLGNGIESETRPDTVANGQ 63

Query: 56  DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115
           DLLKDE+V+E LTRNIQFFG+ESQ KV+GSYVVVIGLGGVGSHAA+MLLRSGVG+LLLVD
Sbjct: 64  DLLKDEIVSEHLTRNIQFFGLESQHKVTGSYVVVIGLGGVGSHAASMLLRSGVGKLLLVD 123

Query: 116 FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGH 175
           FDQVS+SSLNRHAVATRADVG PKA+CLKKHFSSIFPECHI+AKV+LYD+SSEEEILSG 
Sbjct: 124 FDQVSLSSLNRHAVATRADVGIPKAMCLKKHFSSIFPECHIEAKVMLYDSSSEEEILSGK 183

Query: 176 PDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235
           PDFVLDCIDNIDTKV LLAACV+RGLKVL ATGAGARADPTRIRVAD+REST DPLSR+V
Sbjct: 184 PDFVLDCIDNIDTKVGLLAACVKRGLKVLSATGAGARADPTRIRVADIRESTIDPLSRSV 243

Query: 236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI 295
            HRLR+ +GIEGGIPVVFSLEKPKAKLLPF G +GEDENP DYQ+VPGFRVRIIPVLG+I
Sbjct: 244 RHRLRRKHGIEGGIPVVFSLEKPKAKLLPFEGTNGEDENPLDYQVVPGFRVRIIPVLGTI 303

Query: 296 PAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
           PAIFG +MAS+V+TQLA  QVQ EPIVN+D+DHYRLLHQRL EHEE++YGT+ EV+VDVE
Sbjct: 304 PAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQRLIEHEETVYGTSAEVEVDVE 363

Query: 356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
           EVMY+ KELWHGRSA + +AKDVGRGMWR++NELMLVRWD +KPATVSNLVLLKFKEADE
Sbjct: 364 EVMYIVKELWHGRSARDETAKDVGRGMWRAMNELMLVRWDAKKPATVSNLVLLKFKEADE 423

Query: 416 HESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           HE++TL+++KE E  FFERV+ VLK+AEL+F
Sbjct: 424 HETKTLEEVKESETEFFERVSCVLKKAELDF 454

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42568166|ref|NP_198569.2| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|115311421|gb|ABI93891.1| At5g37530 [Arabidopsis thaliana] gi|332006819|gb|AED94202.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/452 (76%), Positives = 399/452 (88%), Gaps = 11/452 (2%)

Query: 6   KLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNV-PNCMTHNGIPA---------- 54
           K K L+L+G GA++GS+STV L KLLSR+  +  ++N   N +  NGI +          
Sbjct: 4   KSKYLSLVGAGALIGSISTVALLKLLSRSSLKQLNENPETNFLAGNGIESETRPDTVANG 63

Query: 55  LDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV 114
            DLLKDE+V+E LTRNIQFFG+ESQ KV+GSYVVVIGLGGVGSHAA+MLLRSGVG+LLLV
Sbjct: 64  QDLLKDEIVSEHLTRNIQFFGLESQHKVTGSYVVVIGLGGVGSHAASMLLRSGVGKLLLV 123

Query: 115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG 174
           DFDQVS+SSLNRHAVATRADVG PKA+CLKKHFSSIFPECHI+AKV+LYD+SSEEEILSG
Sbjct: 124 DFDQVSLSSLNRHAVATRADVGIPKAMCLKKHFSSIFPECHIEAKVMLYDSSSEEEILSG 183

Query: 175 HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRA 234
            PDFVLDCIDNIDTKV LLAACV+RGLKVL ATGAGARADPTRIRVAD+REST DPLSR+
Sbjct: 184 KPDFVLDCIDNIDTKVGLLAACVKRGLKVLSATGAGARADPTRIRVADIRESTIDPLSRS 243

Query: 235 VMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294
           V HRLR+ +GIEGGIPVVFSLEKPKAKLLPF G +GEDENP DYQ+VPGFRVRIIPVLG+
Sbjct: 244 VRHRLRRKHGIEGGIPVVFSLEKPKAKLLPFEGTNGEDENPLDYQVVPGFRVRIIPVLGT 303

Query: 295 IPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDV 354
           IPAIFG +MAS+V+TQLA  QVQ EPIVN+D+DHYRLLHQRL EHEE++YGT+ EV+VDV
Sbjct: 304 IPAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQRLIEHEETVYGTSAEVEVDV 363

Query: 355 EEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEAD 414
           EEVMY+ KELWHGRSA + +AKDVGRGMWR++NELMLVRWD +KPATVSNLVLLKFKEAD
Sbjct: 364 EEVMYIVKELWHGRSARDETAKDVGRGMWRAMNELMLVRWDAKKPATVSNLVLLKFKEAD 423

Query: 415 EHESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           EHE++TL+++KE E  FFERV+ VLK+AEL+F
Sbjct: 424 EHETKTLEEVKESETEFFERVSCVLKKAELDF 455

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177437|dbj|BAB10670.1| unnamed protein product [Arabidopsis thaliana]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/391 (82%), Positives = 365/391 (93%)

Query: 56  DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD 115
           DLLKDE+V+E LTRNIQFFG+ESQ KV+GSYVVVIGLGGVGSHAA+MLLRSGVG+LLLVD
Sbjct: 22  DLLKDEIVSEHLTRNIQFFGLESQHKVTGSYVVVIGLGGVGSHAASMLLRSGVGKLLLVD 81

Query: 116 FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGH 175
           FDQVS+SSLNRHAVATRADVG PKA+CLKKHFSSIFPECHI+AKV+LYD+SSEEEILSG 
Sbjct: 82  FDQVSLSSLNRHAVATRADVGIPKAMCLKKHFSSIFPECHIEAKVMLYDSSSEEEILSGK 141

Query: 176 PDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV 235
           PDFVLDCIDNIDTKV LLAACV+RGLKVL ATGAGARADPTRIRVAD+REST DPLSR+V
Sbjct: 142 PDFVLDCIDNIDTKVGLLAACVKRGLKVLSATGAGARADPTRIRVADIRESTIDPLSRSV 201

Query: 236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI 295
            HRLR+ +GIEGGIPVVFSLEKPKAKLLPF G +GEDENP DYQ+VPGFRVRIIPVLG+I
Sbjct: 202 RHRLRRKHGIEGGIPVVFSLEKPKAKLLPFEGTNGEDENPLDYQVVPGFRVRIIPVLGTI 261

Query: 296 PAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
           PAIFG +MAS+V+TQLA  QVQ EPIVN+D+DHYRLLHQRL EHEE++YGT+ EV+VDVE
Sbjct: 262 PAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQRLIEHEETVYGTSAEVEVDVE 321

Query: 356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
           EVMY+ KELWHGRSA + +AKDVGRGMWR++NELMLVRWD +KPATVSNLVLLKFKEADE
Sbjct: 322 EVMYIVKELWHGRSARDETAKDVGRGMWRAMNELMLVRWDAKKPATVSNLVLLKFKEADE 381

Query: 416 HESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
           HE++TL+++KE E  FFERV+ VLK+AEL+F
Sbjct: 382 HETKTLEEVKESETEFFERVSCVLKKAELDF 412

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:2169881	457	AT5G37530 [Arabidopsis thalian	0.984	0.964	0.741	1.6e-175
POMBASE|SPAC1A6.10	485	SPAC1A6.10 "Moeb/ThiF domain"	0.787	0.727	0.395	4.2e-63
CGD|CAL0005281	434	orf19.2115 [Candida albicans (	0.901	0.930	0.358	1.9e-60
UNIPROTKB|Q5ACV2	434	CaO19.2115 "Putative uncharact	0.901	0.930	0.358	1.9e-60
SGD|S000001510	447	YKL027W "Protein of unknown fu	0.946	0.948	0.334	5e-60
UNIPROTKB|G5EI49	524	MGCH7_ch7g614 "Molybdopterin b	0.752	0.643	0.407	9.9e-55
ASPGD|ASPL0000075271	515	AN4714 [Emericella nidulans (t	0.564	0.491	0.423	8.3e-51
DICTYBASE|DDB_G0268496	477	DDB_G0268496 "Uncharacterized	0.830	0.779	0.345	1.8e-48
SGD|S000001045	429	YHR003C "Protein of unknown fu	0.901	0.941	0.282	5.7e-43
UNIPROTKB|Q747H8	255	GSU3288 "YgdL family protein"	0.551	0.968	0.332	3.3e-31

TAIR|locus:2169881 AT5G37530 [Arabidopsis thaliana (taxid:3702)]

 Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
 Identities = 335/452 (74%), Positives = 387/452 (85%)

Query:     6 KLKSLALLGTGAVLGSVSTVFLYKLLSRNIARSHSKNVP-NCMTHNGIPA---------- 54
             K K L+L+G GA++GS+STV L KLLSR+  +  ++N   N +  NGI +          
Sbjct:     4 KSKYLSLVGAGALIGSISTVALLKLLSRSSLKQLNENPETNFLAGNGIESETRPDTVANG 63

Query:    55 LDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXX 114
              DLLKDE+V+E LTRNIQFFG+ESQ KV+GSYVVVIGLGGVGSHAA+M            
Sbjct:    64 QDLLKDEIVSEHLTRNIQFFGLESQHKVTGSYVVVIGLGGVGSHAASMLLRSGVGKLLLV 123

Query:   115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG 174
             DFDQVS+SSLNRHAVATRADVG PKA+CLKKHFSSIFPECHI+AKV+LYD+SSEEEILSG
Sbjct:   124 DFDQVSLSSLNRHAVATRADVGIPKAMCLKKHFSSIFPECHIEAKVMLYDSSSEEEILSG 183

Query:   175 HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRA 234
              PDFVLDCIDNIDTKV LLAACV+RGLKVL ATGAGARADPTRIRVAD+REST DPLSR+
Sbjct:   184 KPDFVLDCIDNIDTKVGLLAACVKRGLKVLSATGAGARADPTRIRVADIRESTIDPLSRS 243

Query:   235 VMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294
             V HRLR+ +GIEGGIPVVFSLEKPKAKLLPF G +GEDENP DYQ+VPGFRVRIIPVLG+
Sbjct:   244 VRHRLRRKHGIEGGIPVVFSLEKPKAKLLPFEGTNGEDENPLDYQVVPGFRVRIIPVLGT 303

Query:   295 IPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDV 354
             IPAIFG +MAS+V+TQLA  QVQ EPIVN+D+DHYRLLHQRL EHEE++YGT+ EV+VDV
Sbjct:   304 IPAIFGQIMASYVITQLAGVQVQMEPIVNLDLDHYRLLHQRLIEHEETVYGTSAEVEVDV 363

Query:   355 EEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEAD 414
             EEVMY+ KELWHGRSA + +AKDVGRGMWR++NELMLVRWD +KPATVSNLVLLKFKEAD
Sbjct:   364 EEVMYIVKELWHGRSARDETAKDVGRGMWRAMNELMLVRWDAKKPATVSNLVLLKFKEAD 423

Query:   415 EHESRTLDDIKEKEPAFFERVTSVLKRAELEF 446
             EHE++TL+++KE E  FFERV+ VLK+AEL+F
Sbjct:   424 EHETKTLEEVKESETEFFERVSCVLKKAELDF 455

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009536 "plastid" evidence=IDA

POMBASE|SPAC1A6.10 SPAC1A6.10 "Moeb/ThiF domain" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 149/377 (39%), Positives = 217/377 (57%)

Query:    60 DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQV 119
             + ++ EQL RN  FFG +  +++  S+V+V+G GGVGS    M            DFDQV
Sbjct:   102 ENLIREQLARNYAFFGEDGMERLRNSFVIVVGCGGVGSWVINMLARSGVQKIRIVDFDQV 161

Query:   120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFV 179
             S+SSLNRH++AT  DVGTPK L +KK      P   +DA+  L++  S +++LSG+PDFV
Sbjct:   162 SLSSLNRHSIATLQDVGTPKTLAIKKAIKKFAPWIEVDARNALFNPDSADDLLSGNPDFV 221

Query:   180 LDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRL 239
             +D IDNI TKV LL+ C    L V+ +TG+  ++DPTR+ +AD+  ++ DPLSRA   RL
Sbjct:   222 IDAIDNIQTKVDLLSYCYNHKLPVIASTGSACKSDPTRVNIADISATSEDPLSRATRRRL 281

Query:   240 RKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIP 296
             R   GI  GIPVVFS EKP   KA LLP +    E  +  +   +P FR RI+PV+G +P
Sbjct:   282 RL-LGIMEGIPVVFSTEKPDPRKASLLPLSEEEFEKGDVDELSALPEFRARILPVIGPMP 340

Query:   297 AIFGMVMASHVVTQLAERQVQTEPIVNMDVDH-YRLLHQRLTEHEESLY-GTAKEVQVDV 354
              IFG+ +A++V+T +A+  +  +PI  M     Y    +RL  H E+   G   +   + 
Sbjct:   341 GIFGLTIATYVLTSIAKYPM--DPISTMTRPRLYEEAVKRL--HAEARKAGVNLDKTFNA 396

Query:   355 EEVMYVAKELWHGRSAWE-HSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEA 413
              E+ Y+ +E++ GRSA   H ++ V            +VRW+ + P   +NLV +   EA
Sbjct:   397 SEMSYIIEEVYVGRSALPPHESQKV-----------TVVRWNPQLPFDHTNLVAMTRNEA 445

Query:   414 DEHESRTLDDIKEKEPA 430
               HE   L   K  +P+
Sbjct:   446 RYHEDNVL--AKNVDPS 460

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISS

GO:0008150 "biological_process" evidence=ND

CGD|CAL0005281 orf19.2115 [Candida albicans (taxid:5476)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 158/441 (35%), Positives = 232/441 (52%)

Query:    10 LALLGTGAV-LGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLT 68
             L+++ T AV +G V     Y+   + I     K  P    H+          E++ EQL 
Sbjct:     8 LSVVATAAVTIGLVEAFHCYE--RKKIHPQPPKETPAKRDHS---------KELIREQLA 56

Query:    69 RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHA 128
             RN  F   +   KV    VVV+G GGVGS  A M            DFDQVS+SSLNRHA
Sbjct:    57 RNYAFLTEDGMDKVRKQRVVVVGAGGVGSWVATMLARSGVESLRIIDFDQVSLSSLNRHA 116

Query:   129 VATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG---HPDFVLDCIDN 185
             VAT  DVG PK  C+K H   I P   ID +  L++  S EE++ G    P F++DCIDN
Sbjct:   117 VATLKDVGIPKVECIKNHLLEIAPWIEIDTRNQLWNLESAEELIYGDDFQPTFIVDCIDN 176

Query:   186 IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI 245
             +DTK  LLA C  + L ++ + GA  ++DPTRI +AD+ ++  DPL + +   L+K  GI
Sbjct:   177 LDTKCDLLAYCHEKKLPIVSSGGAATKSDPTRINLADISKTEEDPLMKKIRVVLKKR-GI 235

Query:   246 EGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV 302
               GIPVVFS EKP   KAKLLP         N      +  FRVRI+PVLG++P +FG+ 
Sbjct:   236 INGIPVVFSAEKPDPRKAKLLPLPDDEFTKGNVDQLSALKDFRVRILPVLGTMPGMFGLA 295

Query:   303 MASHVVTQLAERQVQTEPIVNMDVDHYRL---LHQRLTEHEESLYGTAKEVQVDVEEVMY 359
             +A++++T +A   +  EP+   +   Y++   L Q L   +  +  T + VQ+ + EV Y
Sbjct:   296 IATYILTTVAGYPM--EPVEGKN--RYKIYDDLLQSLAGQQTRIGKTDQRVQIAMHEVNY 351

Query:   360 VAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESR 419
             + +E++ G+S   + +             L L RWD  K  +  N+V++   E   HE R
Sbjct:   352 ILEEVFRGKSPISNYS-----------TRLTLSRWDPSKEISFQNVVVMTKDEQRNHEKR 400

Query:   420 TLDDIKEKEPAFFERVTSVLK 440
              L+  ++ E  + + V  ++K
Sbjct:   401 VLNGGEKIEDVYSKEVVDLVK 421

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ACV2 CaO19.2115 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 158/441 (35%), Positives = 232/441 (52%)

Query:    10 LALLGTGAV-LGSVSTVFLYKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLT 68
             L+++ T AV +G V     Y+   + I     K  P    H+          E++ EQL 
Sbjct:     8 LSVVATAAVTIGLVEAFHCYE--RKKIHPQPPKETPAKRDHS---------KELIREQLA 56

Query:    69 RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHA 128
             RN  F   +   KV    VVV+G GGVGS  A M            DFDQVS+SSLNRHA
Sbjct:    57 RNYAFLTEDGMDKVRKQRVVVVGAGGVGSWVATMLARSGVESLRIIDFDQVSLSSLNRHA 116

Query:   129 VATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG---HPDFVLDCIDN 185
             VAT  DVG PK  C+K H   I P   ID +  L++  S EE++ G    P F++DCIDN
Sbjct:   117 VATLKDVGIPKVECIKNHLLEIAPWIEIDTRNQLWNLESAEELIYGDDFQPTFIVDCIDN 176

Query:   186 IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI 245
             +DTK  LLA C  + L ++ + GA  ++DPTRI +AD+ ++  DPL + +   L+K  GI
Sbjct:   177 LDTKCDLLAYCHEKKLPIVSSGGAATKSDPTRINLADISKTEEDPLMKKIRVVLKKR-GI 235

Query:   246 EGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV 302
               GIPVVFS EKP   KAKLLP         N      +  FRVRI+PVLG++P +FG+ 
Sbjct:   236 INGIPVVFSAEKPDPRKAKLLPLPDDEFTKGNVDQLSALKDFRVRILPVLGTMPGMFGLA 295

Query:   303 MASHVVTQLAERQVQTEPIVNMDVDHYRL---LHQRLTEHEESLYGTAKEVQVDVEEVMY 359
             +A++++T +A   +  EP+   +   Y++   L Q L   +  +  T + VQ+ + EV Y
Sbjct:   296 IATYILTTVAGYPM--EPVEGKN--RYKIYDDLLQSLAGQQTRIGKTDQRVQIAMHEVNY 351

Query:   360 VAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESR 419
             + +E++ G+S   + +             L L RWD  K  +  N+V++   E   HE R
Sbjct:   352 ILEEVFRGKSPISNYS-----------TRLTLSRWDPSKEISFQNVVVMTKDEQRNHEKR 400

Query:   420 TLDDIKEKEPAFFERVTSVLK 440
              L+  ++ E  + + V  ++K
Sbjct:   401 VLNGGEKIEDVYSKEVVDLVK 421

GO:0008150 "biological_process" evidence=ND

SGD|S000001510 YKL027W "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
 Identities = 149/446 (33%), Positives = 239/446 (53%)

Query:     3 ETGKLKSLALLGTGAVLGSVSTVFL-YKLLSRNIARSHSKNVPNCMTHNGIPALDLLKDE 61
             +T KL +   L T AV       +  ++   + IA+  +KN     T +         ++
Sbjct:     5 DTWKLITATALFTVAVTTITDYAWTSWQAQKQVIAQQKNKNKGG-QTKSDTDKYHQYDEQ 63

Query:    62 VVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSV 121
              + + L  N++F G ++ +K+S  YVVV+G GGVGS                 DFDQVS+
Sbjct:    64 FIRQSLKNNVEFLGEDTIEKLSNQYVVVVGAGGVGSWVVNSLVRSGCRKIRVVDFDQVSL 123

Query:   122 SSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGH--PDFV 179
             SSLNRH+ A   DVGTPK  CL++H   I P C ID    L+   + E +  G+  PDF+
Sbjct:   124 SSLNRHSCAILNDVGTPKVECLRRHMREIAPWCEIDPINELWTLQNGERLTLGNGTPDFI 183

Query:   180 LDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRL 239
             +DCIDNIDTKV LL      G+KV+ + GA A++DPT++ V DL  +  DPL+R V  +L
Sbjct:   184 VDCIDNIDTKVDLLEFAYNHGIKVISSMGASAKSDPTKLNVGDLATTEEDPLARVVRRKL 243

Query:   240 RKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIP 296
             +K  GI  GIPVVFS EKP   KAKLLP      E     +   +  FRVRI+PVLG++P
Sbjct:   244 KKR-GILSGIPVVFSAEKPDPKKAKLLPLPDEEYERGKVDELSALKDFRVRILPVLGTMP 302

Query:   297 AIFGMVMASHVVTQLAERQVQTEPIVNMD-VDHYRLLHQRLTEHEESLYGTAKEVQVDVE 355
             ++FG+ + + +++ ++++ +  EP+   + +  Y  ++Q L      +   ++ + + ++
Sbjct:   303 SLFGLTITTWILSNISDKPL--EPVEGKNRIKVYDGIYQSLAGQMSRVGIPSQRIPLALK 360

Query:   356 EVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADE 415
             +V Y+ +E++ G+S           G+      L L +WD  KP ++ N+V+L   E   
Sbjct:   361 DVSYLVEEVFKGKSPIS--------GI---STRLTLTKWDPSKPISLQNVVVLTKNEQKV 409

Query:   416 HESRTLDDIKEKEPAFFERVTSVLKR 441
             HE R L   +  +  +  +V  ++ +
Sbjct:   410 HEDRVLKGKESLQDVYDAKVLKLVSQ 435

GO:0005741 "mitochondrial outer membrane" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|G5EI49 MGCH7_ch7g614 "Molybdopterin biosynthesis protein moeB" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 148/363 (40%), Positives = 197/363 (54%)

Query:    60 DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQV 119
             +E++ EQL RN  F G E   K+  S+V+V+G GGVGSH A              DFD V
Sbjct:    98 EELILEQLARNAVFLGDEGMTKLRRSFVIVVGCGGVGSHCATSLARSGVGRIRLIDFDNV 157

Query:   120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILS------ 173
             S+SSLNRHAVAT ADVGT K  CLK+   +I P    D     +D+ +EE +L       
Sbjct:   158 SLSSLNRHAVATLADVGTQKTACLKRRLVAIAPWIRFDLCTEKFDSEAEERLLGPWAEDG 217

Query:   174 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233
               PDFV+D IDNI+TKV LL  C    + V+ + GA  + DPTR+ V D+  ST+DPLSR
Sbjct:   218 AKPDFVVDAIDNIETKVELLRYCHEHKIPVISSMGAACKGDPTRVMVGDVGVSTDDPLSR 277

Query:   234 AVMHRLRKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP 290
             A   RL K  GI  GIPVVFS E+    KA+LLP +    +  +  D  ++P FRVRI+P
Sbjct:   278 ATRRRL-KLLGITSGIPVVFSTEQRGEGKAELLPLSEEEFQKGSVGDLGVLPDFRVRILP 336

Query:   291 VLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGT-AKE 349
             VLG++PA+FG   A+HV+  +        P  + D    +L  Q L     SL GT AK 
Sbjct:   337 VLGTMPAVFGYTAANHVILSITGYPTDYAPGKSRD----KLYDQALA----SLQGTEAKV 388

Query:   350 VQV----DVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSV-NELMLVRWDREKPATVSN 404
             V+     + + V+ +   L  G  A+       GR     +   L+LVRW R  PAT   
Sbjct:   389 VRSFNGGNADIVVGLRTPLSPGDIAFMIEEVFRGRSAITGIATRLVLVRWRR--PATDPL 446

Query:   405 LVL 407
             +V+
Sbjct:   447 MVI 449

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000075271 AN4714 [Emericella nidulans (taxid:162425)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 113/267 (42%), Positives = 162/267 (60%)

Query:    60 DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQV 119
             +E++ EQL RN  F   E   K+  ++++V+G GGVGSHA A             DFDQV
Sbjct:    95 EELILEQLARNRVFLKDEGLAKLRDAFIIVVGCGGVGSHAVASLARSGVSKIRLIDFDQV 154

Query:   120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILS------ 173
             ++SSLNRHA+AT ADVGTPK  C+++    I P    D +  L+ AS+ +++L+      
Sbjct:   155 TLSSLNRHALATLADVGTPKVHCIRRRLQQIVPWVKFDCRNELFGASAADDLLAPWTLDD 214

Query:   174 ---GH-PDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTND 229
                G  P +VLDCIDNI +KV LL  C    + V+ + GAG ++DPTR+ + D+  S++D
Sbjct:   215 ADKGQKPVYVLDCIDNIQSKVELLHYCHSHSIPVISSMGAGCKSDPTRVMITDMSVSSDD 274

Query:   230 PLSRAVMHRLRKDYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRV 286
              LSR+   RL K  G+  GIPVVFS EKP   KA LLP            +  ++P FR 
Sbjct:   275 RLSRSTRRRL-KLLGVTTGIPVVFSTEKPGPGKATLLPLAEEEFAKGEVGELSVLPDFRS 333

Query:   287 RIIPVLGSIPAIFGMVMASHVVTQLAE 313
             RI+PVLG++PA+FG  +A+HV+ +++E
Sbjct:   334 RILPVLGTMPAVFGYTLANHVICEISE 360

GO:0008150 "biological_process" evidence=ND

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

DICTYBASE|DDB_G0268496 DDB_G0268496 "Uncharacterized protein YKL027W" [Dictyostelium discoideum (taxid:44689)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 139/402 (34%), Positives = 210/402 (52%)

Query:    55 LD-LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXX 113
             LD LL++E+  EQ+ R   ++G E  +K+  S+VVV+GLGGVG  AA +           
Sbjct:    84 LDSLLQEEIFNEQMDRTKLYYGEEGFEKIRESFVVVVGLGGVGGAAAHVLLRSGVKKLRL 143

Query:   114 XDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILS 173
              D D V++SSLNR+A+ATR DVG  K   +K+HF  I PE  ++A    +      ++L 
Sbjct:   144 IDPDLVTLSSLNRNALATRNDVGRSKVEVMKQHFHDICPEVEVEAIQTFFTGELAPKLLH 203

Query:   174 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR 233
             G PD+VLDCIDN  TKV LL  C R  L+V+ + GAG+ +DPT++ ++D+  +   P  R
Sbjct:   204 GKPDYVLDCIDNTQTKVELLTYCKRENLRVISSFGAGSSSDPTKVHISDISYTFGCPFGR 263

Query:   234 AVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENP--SDYQMVPGFRVRIIPV 291
              V  RL K  GI+ GI  V+S E  + KL+P T    EDE    ++  + P  RVR + V
Sbjct:   264 EV-RRLLKLNGIQDGILCVYSTEVHRKKLIPLT----EDELKLLNEQAVKPTLRVRTLGV 318

Query:   292 LGSIPAIFGMVMASHVVTQLA------ERQVQTEPIVNMDVDHYRLLHQR-LTEHEESLY 344
                IP IFG  M+ +V+  +       E   +T P +      ++LL ++ L  H     
Sbjct:   319 SMPIPLIFGTAMSCNVLNDIVGIKTILEEDKRTPPPLTEYTRLFKLLVKKDLIMHRTP-- 376

Query:   345 GTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREKPATVSN 404
              T  +  +   ++ Y+  E++  +S           G   SV  L+++RW  EKP   +N
Sbjct:   377 PTHLKKFMGPLDIRYIIDEIYEKKSGIS--------GQQSSV--LIVIRWRPEKPCAPNN 426

Query:   405 LVLLKFKEADEHESRT-LDDIKEKEPAFFERVTSVLKRAELE 445
             L+ L   EA+ HE  T +D    KE    ER+  +L    ++
Sbjct:   427 LIYLSQAEAEIHEKVTNIDQHYPKEVV--ERIDKLLSTVVMD 466

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

SGD|S000001045 YHR003C "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 121/428 (28%), Positives = 207/428 (48%)

Query:    22 VSTVFLYKLLSRNIARSHSKNVP-NCMTHNG--IPALDLLKDEVVAEQLTRNIQFFGVES 78
             ++T  L  + S  +A+S  K    +C  +    +       D +  EQL RN  F G E 
Sbjct:     9 IATTALISVFSTQLAKSVWKEYKLSCAANKNKTVSRPRQYDDHLFREQLARNYAFLGEEG 68

Query:    79 QQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRADVGTP 138
              +K+   Y+V++G G VGS    M            D + +S+ SLN H  A  +D+G P
Sbjct:    69 MRKIKEQYIVIVGAGEVGSWVCTMLIRSGCQKIMIIDPENISIDSLNTHCCAVLSDIGKP 128

Query:   139 KALCLKKHFSSIFPECHIDAKVLLYDASSEEEIL--SGH-PDFVLDCIDNIDTKVALLAA 195
             K  CLK+H S I P   I A+   +   +  +++   G  P F++DC+DN+++KV LL  
Sbjct:   129 KVQCLKEHLSKIAPWSEIKARAKAWTKENSHDLIFADGESPTFIVDCLDNLESKVDLLEY 188

Query:   196 CVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSL 255
                  + V+ + G   ++DPTR+ + D+  +  DP+SR V  +LRK  GI  GI VVFS 
Sbjct:   189 AHHNKIDVISSMGVATKSDPTRVSINDISMTEFDPISRCVRRKLRKR-GIATGISVVFSN 247

Query:   256 EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ 315
             E    +      P   D        V    +R +P LG++P IFG+ +A+ ++T+++   
Sbjct:   248 EMLDPRRDDILSPI--DCEHRAINAVRDEALRHLPELGTMPGIFGLSIATWILTKVSGYP 305

Query:   316 VQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQV-DVEEVMYVAKELWHGRSAWE-H 373
             ++   + N  +  Y  + +   +    L    +   +  +EEV Y+ +E++ G+S    +
Sbjct:   306 MKENEVKNR-LKFYDSILETFQKQMARLNENKERSSLLGLEEVGYIVEEMFRGKSPISGY 364

Query:   374 SAKDVGRGMWRSVNELMLVRWDREKPATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFE 433
             S K            L L +W+  K  +++N+VL+  +E + HE R L D ++    + E
Sbjct:   365 STK------------LALTKWEANKEISLTNVVLMTKEEQEIHEKRILLDGEKLTAVYSE 412

Query:   434 RVTSVLKR 441
              V   ++R
Sbjct:   413 EVLDFIER 420

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q747H8 GSU3288 "YgdL family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 83/250 (33%), Positives = 132/250 (52%)

Query:    66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLN 125
             + +R     G E  Q++ GS V V GLGGVGS AA              DFD + ++++N
Sbjct:     5 RFSRTEILIGPEGLQRLHGSTVAVFGLGGVGSFAAEALCRAGVGRLVLVDFDDICLTNVN 64

Query:   126 RHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN 185
             R   A    VG  K   + +    I P+  I      Y+A++ + +LSG  D+V+D ID+
Sbjct:    65 RQLHALDGTVGRAKVQVMAERLRLINPQADIVPHKDFYEAANSDFLLSGGHDYVVDAIDH 124

Query:   186 IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI 245
             I +K+ L+ +C  RGL ++ + GA  + DP RIRVAD+ +++   +++ V   LRK  GI
Sbjct:   125 ITSKLHLIRSCKERGLPIVSSMGAANKLDPARIRVADIAQTSTCRMAKVVRKLLRKQ-GI 183

Query:   246 EGGIPVVFSLEKPKAKLLPFTGPSGED--ENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM 303
             + G+ VV+S E+ + + +P  G   +    N  + +     R  I+  +  IP+IFG+ M
Sbjct:   184 KNGVKVVYSTEEYREQAMPDAGCRSDCICPNKEEQRFSCEHRRTILGSISFIPSIFGLTM 243

Query:   304 ASHVVTQLAE 313
             A  VV  L E
Sbjct:   244 AGVVVNDLLE 253

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36101	YKC7_YEAST	No assigned EC number	0.3568	0.9017	0.9038	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
cd00755	231	cd00755, YgdL_like, Family of activating enzymes (	1e-102
COG1179	263	COG1179, COG1179, Dinucleotide-utilizing enzymes i	3e-83
pfam00899	134	pfam00899, ThiF, ThiF family	2e-43
PRK15116	268	PRK15116, PRK15116, sulfur acceptor protein CsdL;	1e-40
cd00757	228	cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA	1e-35
cd01483	143	cd01483, E1_enzyme_family, Superfamily of activati	3e-34
COG0476	254	COG0476, ThiF, Dinucleotide-utilizing enzymes invo	2e-28
PRK08644	212	PRK08644, PRK08644, thiamine biosynthesis protein	4e-26
cd01487	174	cd01487, E1_ThiF_like, E1_ThiF_like	1e-25
TIGR02356	202	TIGR02356, adenyl_thiF, thiazole biosynthesis aden	7e-25
PRK05690	245	PRK05690, PRK05690, molybdopterin biosynthesis pro	6e-24
TIGR02355	240	TIGR02355, moeB, molybdopterin synthase sulfurylas	2e-20
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	2e-19
PRK07688	339	PRK07688, PRK07688, thiamine/molybdopterin biosynt	6e-19
TIGR02354	200	TIGR02354, thiF_fam2, thiamine biosynthesis protei	7e-19
PRK08328	231	PRK08328, PRK08328, hypothetical protein; Provisio	8e-18
PRK12475	338	PRK12475, PRK12475, thiamine/molybdopterin biosynt	4e-17
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	1e-16
PRK05600	370	PRK05600, PRK05600, thiamine biosynthesis protein	3e-16
PRK07411	390	PRK07411, PRK07411, hypothetical protein; Validate	3e-14
PRK07878	392	PRK07878, PRK07878, molybdopterin biosynthesis-lik	3e-14
PRK08223	287	PRK08223, PRK08223, hypothetical protein; Validate	5e-14
PRK14851	679	PRK14851, PRK14851, hypothetical protein; Provisio	6e-12
PRK07877	722	PRK07877, PRK07877, hypothetical protein; Provisio	1e-07
cd01489	312	cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E	1e-07
PRK14852	989	PRK14852, PRK14852, hypothetical protein; Provisio	2e-07
cd01484	234	cd01484, E1-2_like, Ubiquitin activating enzyme (E	5e-07
cd01488	291	cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1	2e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	3e-05
cd01485	198	cd01485, E1-1_like, Ubiquitin activating enzyme (E	8e-05
cd01492	197	cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E	8e-05
TIGR01408	1008	TIGR01408, Ube1, ubiquitin-activating enzyme E1	4e-04
cd01490	435	cd01490, Ube1_repeat2, Ubiquitin activating enzyme	0.001
COG1748	389	COG1748, LYS9, Saccharopine dehydrogenase and rela	0.002
pfam03435	380	pfam03435, Saccharop_dh, Saccharopine dehydrogenas	0.002
cd01491	286	cd01491, Ube1_repeat1, Ubiquitin activating enzyme	0.003
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	0.003

>gnl|CDD|238384 cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

 Score =  302 bits (777), Expect = e-102
 Identities = 101/235 (42%), Positives = 140/235 (59%), Gaps = 4/235 (1%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           +G E  +K+  ++V V+GLGGVGS AA  L RSGVG+L L+DFD V VS+LNR   A  +
Sbjct: 1   YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLS 60

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
            VG PK   + +    I PEC +DA        + E++L G PDFV+D ID+I  KVAL+
Sbjct: 61  TVGKPKVEVMAERIRDINPECEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALI 120

Query: 194 AACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVF 253
           A C +R + V+ + GAG + DPTRIRVAD+ +++ DPL+R V  RLRK  GI  G+PVV+
Sbjct: 121 AYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRKRLRKR-GIFFGVPVVY 179

Query: 254 SLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV 308
           S E P            E         + G R   +    ++PA+FG+ +AS V+
Sbjct: 180 STEPPDPPKADELVCGDE---VGADAALQGLRRAGLGSASTVPAVFGLAIASEVI 231

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 231

>gnl|CDD|224100 COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

 Score =  256 bits (656), Expect = 3e-83
 Identities = 88/259 (33%), Positives = 139/259 (53%), Gaps = 12/259 (4%)

Query: 60  DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119
            +   ++     + +G +  +K+  ++V V+G+GGVGS A   L RSG+GR+ L+D D V
Sbjct: 6   SDAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDV 65

Query: 120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFV 179
            V++ NR   A   D+G PK   +K+    I PEC + A        + E++LS   D+V
Sbjct: 66  CVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYV 125

Query: 180 LDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRL 239
           +D ID++  KVAL+A C R  + V+ + GAG + DPTRI+VAD+ ++  DPL+  V  +L
Sbjct: 126 IDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQVADISKTIQDPLAAKVRRKL 185

Query: 240 RKDY-GIEGGIPVVFSLEKP----KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS 294
           RK +  I+ G+PVVFS E P        +         E+            R +     
Sbjct: 186 RKRFPKIKFGVPVVFSTENPVYPQADGSVC--AIDATAESA-----KRLDCARGLGSATF 238

Query: 295 IPAIFGMVMASHVVTQLAE 313
           + A+FG+V AS VV ++ +
Sbjct: 239 VTAVFGLVAASEVVKKILD 257

Length = 263

>gnl|CDD|216180 pfam00899, ThiF, ThiF family

 Score =  148 bits (376), Expect = 2e-43
 Identities = 55/134 (41%), Positives = 79/134 (58%), Gaps = 1/134 (0%)

Query: 85  SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK 144
           S V+V+G GG+GS AA  L R+GVG+L LVDFD V +S+LNR  + T +D+G PKA   K
Sbjct: 2   SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAK 61

Query: 145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL 204
           +   +I P+  ++A        + EE+L G  D V+D +DN   +  L  ACV+RG+ ++
Sbjct: 62  ERLRAINPDVEVEAYPERLTPENLEELLKGV-DLVVDALDNFAARYLLNDACVKRGIPLI 120

Query: 205 CATGAGARADPTRI 218
            A   G     T I
Sbjct: 121 SAGALGFDGQVTVI 134

This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Length = 134

>gnl|CDD|185071 PRK15116, PRK15116, sulfur acceptor protein CsdL; Provisional

 Score =  145 bits (368), Expect = 1e-40
 Identities = 82/260 (31%), Positives = 130/260 (50%), Gaps = 26/260 (10%)

Query: 72  QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT 131
           + +G ++ Q  + +++ V+G+GGVGS AA  L R+G+G + L+D D V V++ NR   A 
Sbjct: 18  RLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHAL 77

Query: 132 RADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA 191
           R +VG  KA  + +    I PEC +          +  E +S    +V+D ID++  K A
Sbjct: 78  RDNVGLAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAA 137

Query: 192 LLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGI----EG 247
           L+A C R  + ++   GAG + DPT+I+V DL ++  DPL+  +  RL+ D+G+    +G
Sbjct: 138 LIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKG 197

Query: 248 --GIPVVFSLEKPKAKLLPFTGPSGE-------DENPSDYQMVPGFRVRIIPVLGSIPAI 298
             G+  VFS E      L +    G         E P       GF    +     + A 
Sbjct: 198 KLGVDCVFSTEA-----LVYPQADGSVCAMKSTAEGPKRMDCASGFGAATM-----VTAT 247

Query: 299 FGMVMASHVVTQL---AERQ 315
           FG V  SH + ++   A RQ
Sbjct: 248 FGFVAVSHALKKMMAKAARQ 267

Length = 268

>gnl|CDD|238386 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA

 Score =  131 bits (332), Expect = 1e-35
 Identities = 57/134 (42%), Positives = 80/134 (59%), Gaps = 3/134 (2%)

Query: 69  RNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR 126
           R I     G E Q+K+  + V+V+G GG+GS AA  L  +GVG+L LVD D V +S+L R
Sbjct: 4   RQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQR 63

Query: 127 HAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI 186
             + T ADVG PKA    +   +I P+  I+A     DA + EE+++G+ D VLDC DN 
Sbjct: 64  QILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDAENAEELIAGY-DLVLDCTDNF 122

Query: 187 DTKVALLAACVRRG 200
            T+  +  ACV+ G
Sbjct: 123 ATRYLINDACVKLG 136

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). . Length = 228

>gnl|CDD|238760 cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

 Score =  124 bits (314), Expect = 3e-34
 Identities = 52/135 (38%), Positives = 77/135 (57%), Gaps = 1/135 (0%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           V+++GLGG+GS  A  L RSGVG++ L+DFD V +S+LNR  +A +AD+G PKA    + 
Sbjct: 2   VLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARR 61

Query: 147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206
            + + P  ++ A        + ++ L G  D V+D IDNI  + AL  AC   G+ V+ A
Sbjct: 62  LNELNPGVNVTAVPEGISEDNLDDFLDG-VDLVIDAIDNIAVRRALNRACKELGIPVIDA 120

Query: 207 TGAGARADPTRIRVA 221
            G G   D   I + 
Sbjct: 121 GGLGLGGDIQVIDIG 135

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Length = 143

>gnl|CDD|223552 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

 Score =  112 bits (282), Expect = 2e-28
 Identities = 57/149 (38%), Positives = 82/149 (55%), Gaps = 3/149 (2%)

Query: 53  PALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLL 112
             L   + E  + Q+       G E QQK+  S V+V+G GG+GS AA  L  +GVG+L 
Sbjct: 1   SMLSDEEIERYSRQILLP--GIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLT 58

Query: 113 LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEIL 172
           +VDFD V +S+L R  + T ADVG PKA    K    + P   + A +   D  + EE++
Sbjct: 59  IVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELI 118

Query: 173 SGHPDFVLDCIDNIDTKVALLAACVRRGL 201
           +   D VLDC DN +T+  +  ACV+ G+
Sbjct: 119 AQF-DVVLDCTDNFETRYLINDACVKLGI 146

Length = 254

>gnl|CDD|236320 PRK08644, PRK08644, thiamine biosynthesis protein ThiF; Provisional

 Score =  104 bits (263), Expect = 4e-26
 Identities = 50/148 (33%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
              +  +K+  + V + G GG+GS+ A  L RSGVG L LVDFD V  S+LNR      +
Sbjct: 18  HTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQY-FIS 76

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
            +G PK   LK++   I P   I+A     D  + EE+     D V++  DN +TK  L+
Sbjct: 77  QIGMPKVEALKENLLEINPFVEIEAHNEKIDEDNIEELFKDC-DIVVEAFDNAETKAMLV 135

Query: 194 AACVRR-GLKVLCATGAGARADPTRIRV 220
              +   G K++ A+G     D   I+ 
Sbjct: 136 ETVLEHPGKKLVAASGMAGYGDSNSIKT 163

Length = 212

>gnl|CDD|238764 cd01487, E1_ThiF_like, E1_ThiF_like

 Score =  102 bits (256), Expect = 1e-25
 Identities = 50/135 (37%), Positives = 71/135 (52%), Gaps = 5/135 (3%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           V + G GG+GS+ A +L RSGVG L LVDFD V  S+LNR        +G PK   LK++
Sbjct: 2   VGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLS-QIGEPKVEALKEN 60

Query: 147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--GLKVL 204
              I P   I+A  +  D ++ E +     D V++  DN +TK A+LA  +       V+
Sbjct: 61  LREINPFVKIEAINIKIDENNLEGLFGDC-DIVVEAFDNAETK-AMLAESLLGNKNKPVV 118

Query: 205 CATGAGARADPTRIR 219
           CA+G     D   I+
Sbjct: 119 CASGMAGFGDSNNIK 133

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Length = 174

>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase ThiF, E

 Score =  100 bits (252), Expect = 7e-25
 Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 1/127 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
            G E QQ++  S+V++IG GG+GS AA  L  +GVG +++VD D V +S+L R  + T  
Sbjct: 11  IGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEE 70

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
           DVG PK     +    +  +  + A      A + E +++   D VLDC DN  T+  + 
Sbjct: 71  DVGRPKVEVAAQRLRELNSDIQVTALKERVTAENLELLINNV-DLVLDCTDNFATRYLIN 129

Query: 194 AACVRRG 200
            ACV  G
Sbjct: 130 DACVALG 136

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 202

>gnl|CDD|180204 PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional

 Score = 99.5 bits (249), Expect = 6e-24
 Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 3/141 (2%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           F  + Q+K+  + V+V+GLGG+G  A+  L  +GVG L LVDFD VS+S+L R  +   A
Sbjct: 22  FDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDA 81

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
            +G PK    +   + I P   I+      D      +++GH D VLDC DN+ T+  L 
Sbjct: 82  TIGQPKVESARAALARINPHIAIETINARLDDDELAALIAGH-DLVLDCTDNVATRNQLN 140

Query: 194 AACVRRGLKVLCATGAGARAD 214
            AC     K    +GA  R +
Sbjct: 141 RACFAA--KKPLVSGAAIRME 159

Length = 245

>gnl|CDD|131408 TIGR02355, moeB, molybdopterin synthase sulfurylase MoeB

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%)

Query: 71  IQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVA 130
           ++ F  + Q+ +  S V+++GLGG+G  A+  L  +GVG L L+DFD VS+S+L R  + 
Sbjct: 11  LRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLH 70

Query: 131 TRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKV 190
           + A++G PK    K   + I P   I+      D +    +++ H D V+DC DN++ + 
Sbjct: 71  SDANIGQPKVESAKDALTQINPHIAINPINAKLDDAELAALIAEH-DIVVDCTDNVEVRN 129

Query: 191 ALLAACVRRGLKVLCATGAGAR 212
            L   C     KV   +GA  R
Sbjct: 130 QLNRQCFAA--KVPLVSGAAIR 149

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899) [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin]. Length = 240

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 89.2 bits (221), Expect = 2e-19
 Identities = 42/123 (34%), Positives = 66/123 (53%), Gaps = 2/123 (1%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
            G + QQ +  + V VIG GG+GS A   L  +GVG + ++D D V +S+L+R  + + A
Sbjct: 18  IGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTA 77

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTK-VAL 192
            VG PKA   ++   ++ P+  +   V     S+  + L    D +LD  DN DT+ +A 
Sbjct: 78  GVGQPKAESAREAMLALNPDVKVTVSVRRLTWSNALDELRDA-DVILDGSDNFDTRHLAS 136

Query: 193 LAA 195
            AA
Sbjct: 137 WAA 139

Length = 355

>gnl|CDD|181084 PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

 Score = 87.4 bits (217), Expect = 6e-19
 Identities = 46/129 (35%), Positives = 74/129 (57%), Gaps = 3/129 (2%)

Query: 75  GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD 134
           G E QQK+   +V++IG G +G+  A ML+R+GVG++ +VD D V  S+L R  + T +D
Sbjct: 15  GEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESD 74

Query: 135 V--GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVAL 192
           V    PKA+  KK    I  +  ++A V    A   EE+++G  D ++D  DN +T+  +
Sbjct: 75  VKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTGV-DLIIDATDNFETRFIV 133

Query: 193 LAACVRRGL 201
             A  + G+
Sbjct: 134 NDAAQKYGI 142

Length = 339

>gnl|CDD|162819 TIGR02354, thiF_fam2, thiamine biosynthesis protein ThiF, family 2

 Score = 84.1 bits (208), Expect = 7e-19
 Identities = 53/146 (36%), Positives = 75/146 (51%), Gaps = 12/146 (8%)

Query: 80  QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK 139
           QK+  + V + GLGG+GS+ A  L R+G+G+L+LVDFD V  S+LNR      + VG PK
Sbjct: 17  QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKA-SQVGEPK 75

Query: 140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG---HPDFVLDCIDNIDTKVALLAAC 196
              LK++ S I P   I+A    YD    EE +       D V +  DN + K A+L   
Sbjct: 76  TEALKENISEINPYTEIEA----YDEKITEENIDKFFKDADIVCEAFDNAEAK-AMLVNA 130

Query: 197 VRRGLK---VLCATGAGARADPTRIR 219
           V    K   ++ A+G     D   I+
Sbjct: 131 VLEKYKDKYLIAASGLAGYDDANSIK 156

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine]. Length = 200

>gnl|CDD|169382 PRK08328, PRK08328, hypothetical protein; Provisional

 Score = 82.2 bits (203), Expect = 8e-18
 Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 2/129 (1%)

Query: 65  EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL 124
           E+  R I  FGVE Q+K+  + V V+G+GG+GS  A  L  +GVGR+LL+D     +S+L
Sbjct: 8   ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNL 67

Query: 125 NRHAVATRADVG-TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCI 183
           NR  +    D+G  PK L  K        +  I+  V      + +E+L G  D ++DC+
Sbjct: 68  NRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG-VDVIVDCL 126

Query: 184 DNIDTKVAL 192
           DN +T+  L
Sbjct: 127 DNFETRYLL 135

Length = 231

>gnl|CDD|183547 PRK12475, PRK12475, thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

 Score = 81.7 bits (202), Expect = 4e-17
 Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 7/131 (5%)

Query: 64  AEQLTRNIQFFGV--ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV 121
            E+ +R I F G+  E Q+K+   +V+++G G +G+  A  L+R+G+G+L + D D V  
Sbjct: 2   QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEW 61

Query: 122 SSLNRHAVATRADVGT--PKALCLKKHFSSIFPECHIDAKVLLYDASSEE-EILSGHPDF 178
           S+L R  + T  D     PKA+  K+H   I  E  I   V   D + EE E L    D 
Sbjct: 62  SNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVT--DVTVEELEELVKEVDL 119

Query: 179 VLDCIDNIDTK 189
           ++D  DN DT+
Sbjct: 120 IIDATDNFDTR 130

Length = 338

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 44/129 (34%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 75  GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD 134
           G E Q+++  + V++IG GG+GS AA  L  +GVG L +VD D V  S+L R  + T   
Sbjct: 126 GEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDR 185

Query: 135 VGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLA 194
           VG PK     +  +++ P+  ++A      + + E +L    D V+D  DN  T+  L  
Sbjct: 186 VGQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQDV-DVVVDGADNFPTRYLLND 244

Query: 195 ACVRRGLKV 203
           ACV+ G  +
Sbjct: 245 ACVKLGKPL 253

Length = 376

>gnl|CDD|235528 PRK05600, PRK05600, thiamine biosynthesis protein ThiF; Validated

 Score = 79.9 bits (197), Expect = 3e-16
 Identities = 72/288 (25%), Positives = 114/288 (39%), Gaps = 61/288 (21%)

Query: 47  MTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRS 106
            T +    L   +    A QL   +  FG+E Q+++  + V+VIG GG+G  A   L  +
Sbjct: 6   HTLSPFMQLPTSELRRTARQL--ALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASA 63

Query: 107 GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166
           GVG + L+D D V VS+++R  +   +DVG PK     +    I P+  ++A      A 
Sbjct: 64  GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTAE 123

Query: 167 SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRES 226
           +  E+L+G  D VLD  D+  TK                              VAD  E 
Sbjct: 124 NAVELLNG-VDLVLDGSDSFATKFL----------------------------VADAAEI 154

Query: 227 TNDPLSRAVMHRLRKDYGI--------EGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDY 278
           T  PL    + R   +  +          G+  +F  E+P    +P    +G        
Sbjct: 155 TGTPLVWGTVLRFHGELAVFNSGPDHRGVGLRDLFP-EQPSGDSIPDCATAG-------- 205

Query: 279 QMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAE-RQVQTEPIVNMD 325
                       VLG+  A+ G +MA+  +  L     VQ   +++ D
Sbjct: 206 ------------VLGATTAVIGALMATEAIKFLTGIGDVQPGTVLSYD 241

Length = 370

>gnl|CDD|180967 PRK07411, PRK07411, hypothetical protein; Validated

 Score = 74.0 bits (182), Expect = 3e-14
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 13/157 (8%)

Query: 47  MTHNGIPALDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLL 104
           M +  +  + L KDE   E+ +R++     G+E Q+++  + V+ IG GG+GS     L 
Sbjct: 1   MLNPNLDEIQLSKDEY--ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLA 58

Query: 105 RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD 164
            +G+GR+ +VDFD V  S+L R  +   + VG PK    K     I P C +D    LY+
Sbjct: 59  AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVD----LYE 114

Query: 165 A--SSEE--EILSGHPDFVLDCIDNIDTKVALLAACV 197
              SSE   +IL+ + D V+D  DN  T+  +  ACV
Sbjct: 115 TRLSSENALDILAPY-DVVVDGTDNFPTRYLVNDACV 150

Length = 390

>gnl|CDD|181156 PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 53  PALDLLKDEVVAEQLTRN--IQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGR 110
           PA +L +DEV   + +R+  I   GV+ Q+++  + V+VIG GG+GS     L  +GVG 
Sbjct: 11  PAAELTRDEV--ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGT 68

Query: 111 LLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEE 170
           L +V+FD V  S+L R  +  ++DVG  KA   +     I P  ++       D S+  E
Sbjct: 69  LGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVE 128

Query: 171 ILSGHPDFVLDCIDNIDTKVALLAACV 197
           + S + D +LD  DN  T+  +  A V
Sbjct: 129 LFSQY-DLILDGTDNFATRYLVNDAAV 154

Length = 392

>gnl|CDD|181302 PRK08223, PRK08223, hypothetical protein; Validated

 Score = 72.0 bits (177), Expect = 5e-14
 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 20/193 (10%)

Query: 65  EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL 124
           E   RN+ +     QQ++  S V + GLGGVG      L R G+G+  + DFD   + + 
Sbjct: 8   EAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNF 67

Query: 125 NRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCID 184
           NR A A  + +G PKA  L +    I PE  I A        + +  L G  D  +D +D
Sbjct: 68  NRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGKENADAFLDG-VDVYVDGLD 126

Query: 185 --NIDTKVALLAACVRRGLKVLCATGAGARA-----DPTRI---RVADLRESTNDP---- 230
               D +  + AAC +RG+  L A   G        DP  +      DL +  N+     
Sbjct: 127 FFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFDPGGMSFDDYFDLSDGMNEVEKAV 186

Query: 231 -----LSRAVMHR 238
                L+ +++HR
Sbjct: 187 RFLAGLAPSMLHR 199

Length = 287

>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 59  KDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118
             E      +RNI  F    Q++++ + V + G+GGVG      ++R+G+GR  + DFDQ
Sbjct: 18  AAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ 77

Query: 119 VSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDF 178
               ++NR   A     G PK   +K+   SI P   I       +A + +  L G  D 
Sbjct: 78  FEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDG-VDV 136

Query: 179 VLDCID 184
           VLD +D
Sbjct: 137 VLDGLD 142

Length = 679

>gnl|CDD|236122 PRK07877, PRK07877, hypothetical protein; Provisional

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 60  DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLL--RSGVGRLLLVDFD 117
            E  A +L RN      E Q+++    + V+GL  VG HA A  L      G L L DFD
Sbjct: 83  REFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VG-HAIAHTLAAEGLCGELRLADFD 140

Query: 118 QVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL--YDASSEEEILSGH 175
            + +S+LNR   A   D+G  KA+   +  + + P  ++  +V        + +  L G 
Sbjct: 141 TLELSNLNR-VPAGVFDLGVNKAVVAARRIAELDP--YLPVEVFTDGLTEDNVDAFLDG- 196

Query: 176 PDFVLDCIDNIDTKVALLAACVRRGLKVLCAT 207
            D V++  D++D KV L  A   R + VL AT
Sbjct: 197 LDVVVEECDSLDVKVLLREAARARRIPVLMAT 228

Length = 722

>gnl|CDD|238766 cd01489, Uba2_SUMO, Ubiquitin activating enzyme (E1) subunit UBA2

 Score = 52.8 bits (127), Expect = 1e-07
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           V+V+G GG+G      L+ +G G + ++D D + +S+LNR  +  +  VG  KA   K+ 
Sbjct: 2   VLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEA 61

Query: 147 FSSIFPECHIDAKVLLYDASSEEEILS----GHPDFVLDCIDNIDTK 189
             S  P    + K++ Y A+ ++   +       D V + +DN+  +
Sbjct: 62  VLSFNP----NVKIVAYHANIKDPDFNVEFFKQFDLVFNALDNLAAR 104

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 312

>gnl|CDD|184854 PRK14852, PRK14852, hypothetical protein; Provisional

 Score = 53.2 bits (127), Expect = 2e-07
 Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 10/185 (5%)

Query: 33  RNIARSHSKNVPNCMTHNGIPALDLLK----DEVVAEQLTRNIQFFGVESQQKVSGSYVV 88
           R +    S N  +  T  G+P LD+LK    D       +RN+       Q+++  S V 
Sbjct: 278 RAVFNHFSTNPVHPETPGGVP-LDMLKLETRDAYTDIAFSRNLGLVDYAGQRRLLRSRVA 336

Query: 89  VIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS 148
           + GLGGVG      L R+G+G   L DFD  S  +LNR   A+ A  G  K   + +   
Sbjct: 337 IAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERAL 396

Query: 149 SIFPECHIDAKVLLYDASSEE-EILSGHPDFVLDCID--NIDTKVALLAACVRRGLKVLC 205
           S+ P   +D +      ++E  +      D ++D ID   +D +  L    +  G+ V+ 
Sbjct: 397 SVNP--FLDIRSFPEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVIT 454

Query: 206 ATGAG 210
           A   G
Sbjct: 455 AGPLG 459

Length = 989

>gnl|CDD|238761 cd01484, E1-2_like, Ubiquitin activating enzyme (E1), repeat 2-like

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 21/70 (30%), Positives = 37/70 (52%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           V+++G GG+G      L   G G++ ++D D + VS+LNR  +    D+G PK+    + 
Sbjct: 2   VLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEA 61

Query: 147 FSSIFPECHI 156
            +   P C +
Sbjct: 62  VNDRNPNCKV 71

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the second repeat of Ub-E1. Length = 234

>gnl|CDD|238765 cd01488, Uba3_RUB, Ubiquitin activating enzyme (E1) subunit UBA3

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           ++VIG GG+G      L  SG   + ++D D + VS+LNR  +    D+G PKA    K 
Sbjct: 2   ILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKF 61

Query: 147 FSSIFPECHI 156
            +   P  ++
Sbjct: 62  VNDRVPGVNV 71

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Length = 291

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%)

Query: 68  TRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH 127
           +R +   G E+ QK++ S V++ G+GG+G   A  L+ +GV  + L D ++     L+ +
Sbjct: 8   SRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSN 67

Query: 128 AVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVL 180
              +  DVG  +A  + K  + + P  H+ +          EE L      VL
Sbjct: 68  FFLSEDDVGRNRAEAVVKKLAELNPYVHVSS----SSVPFNEEFLDKFQCVVL 116

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238762 cd01485, E1-1_like, Ubiquitin activating enzyme (E1), repeat 1-like

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 69  RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL--NR 126
           R I+ +G E+Q K+  + V++IG G +G+  A  L+ +G+  + +VD   VS   L  N 
Sbjct: 4   RQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNF 63

Query: 127 HAVATRADVGTPKALCLKKHFSSIFPECH---IDAKVLLYDASSEE 169
              A  ++ G  +A    +    + P      ++   L  D++ EE
Sbjct: 64  FLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEEDSLSNDSNIEE 109

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologous to the first repeat of Ub-E1. Length = 198

>gnl|CDD|238769 cd01492, Aos1_SUMO, Ubiquitin activating enzyme (E1) subunit Aos1

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 1/83 (1%)

Query: 64  AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSS 123
                R I+ +G+E+Q+++  + +++IGL G+G+  A  L+ SG+G L ++D   V+   
Sbjct: 1   IALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEED 60

Query: 124 LNRHAVATRADVGTPKA-LCLKK 145
           L    +    D+G  +A   L++
Sbjct: 61  LGAQFLIPAEDLGQNRAEASLER 83

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Length = 197

>gnl|CDD|130475 TIGR01408, Ube1, ubiquitin-activating enzyme E1

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 16/173 (9%)

Query: 71  IQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLN 125
           I  FG   QQK+    + ++G G +G          GV     G + + D D +  S+LN
Sbjct: 406 IAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLN 465

Query: 126 RHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHP-----DFVL 180
           R  +     +G PK+         I P+  IDA         E E +         D V+
Sbjct: 466 RQFLFRPHHIGKPKSYTAADATLKINPQIKIDA--HQNRVGPETETIFNDEFYEKLDVVI 523

Query: 181 DCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTN---DP 230
           + +DN++ +  + + C+   LK L  +G       T++ V  L ES     DP
Sbjct: 524 NALDNVEARRYVDSRCLAF-LKPLLESGTLGTKGNTQVVVPHLTESYGSSRDP 575

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. Length = 1008

>gnl|CDD|238767 cd01490, Ube1_repeat2, Ubiquitin activating enzyme (E1), repeat 2

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)

Query: 109 GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSE 168
           G + + D D +  S+LNR  +    DVG PK+        ++ P+  I A        +E
Sbjct: 29  GEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQNRVGPETE 88

Query: 169 E---EILSGHPDFVLDCIDNIDTKVALLAACV 197
               +      D V + +DN+D ++ +   CV
Sbjct: 89  HIFNDEFWEKLDGVANALDNVDARMYVDRRCV 120

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Length = 435

>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 6/70 (8%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVD--FDQVS-VSSLNRHAVATRA-DVGTPKAL- 141
           ++VIG GGVGS  A  L ++G G + + D   ++ + ++ L    V     D     AL 
Sbjct: 4   ILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALV 63

Query: 142 -CLKKHFSSI 150
             +K     I
Sbjct: 64  ALIKDFDLVI 73

Length = 389

>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 24/114 (21%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH 146
           V++IG GGVG   A +L R G   + + D                +A      AL   K 
Sbjct: 1   VLIIGAGGVGQGVAPLLARHGDLEITVADRS------------LEKAQ-----ALAAPKL 43

Query: 147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG 200
                    I   V   +  +   +L    D V++      + + +L AC+  G
Sbjct: 44  GLRF-----IAIAVDADNYEALVALLKEG-DLVINLAPPFLS-LTVLKACIETG 90

This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Length = 380

>gnl|CDD|238768 cd01491, Ube1_repeat1, Ubiquitin activating enzyme (E1), repeat 1

 Score = 39.2 bits (92), Expect = 0.003
 Identities = 23/72 (31%), Positives = 36/72 (50%)

Query: 69  RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA 128
           R +   G E+ +K+  S V++ GLGG+G   A  L+ +GV  + L D    S S L+   
Sbjct: 4   RQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQF 63

Query: 129 VATRADVGTPKA 140
                D+G  +A
Sbjct: 64  YLREEDIGKNRA 75

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. Length = 286

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD----QVSVSSLNRHAVATRADVGTP 138
           VV +G GG G+  A  LL  GV RL + D D          LN    A RA  G+ 
Sbjct: 130 VVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSD 185

Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	100.0
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	100.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	100.0
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	100.0
PRK08223	287	hypothetical protein; Validated	100.0
PRK07411	390	hypothetical protein; Validated	100.0
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	100.0
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	100.0
PRK08328	231	hypothetical protein; Provisional	100.0
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	100.0
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	100.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	100.0
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	100.0
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	100.0
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	100.0
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	100.0
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	100.0
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	100.0
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	100.0
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	100.0
COG0476	254	ThiF Dinucleotide-utilizing enzymes involved in mo	100.0
PRK07877	722	hypothetical protein; Provisional	100.0
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	100.0
PRK14851	679	hypothetical protein; Provisional	100.0
PRK14852	989	hypothetical protein; Provisional	100.0
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	100.0
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	100.0
TIGR03603	318	cyclo_dehy_ocin bacteriocin biosynthesis cyclodehy	100.0
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	100.0
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	100.0
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	100.0
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	100.0
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	100.0
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	99.97
KOG2013	603	consensus SMT3/SUMO-activating complex, catalytic	99.97
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	99.97
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	99.97
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	99.96
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	99.96
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	99.96
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	99.96
KOG2014	331	consensus SMT3/SUMO-activating complex, AOS1/RAD31	99.96
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	99.95
PRK06153	393	hypothetical protein; Provisional	99.94
PTZ00245	287	ubiquitin activating enzyme; Provisional	99.94
KOG2015	422	consensus NEDD8-activating complex, catalytic comp	99.94
KOG2336	422	consensus Molybdopterin biosynthesis-related prote	99.94
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.92
KOG2012	1013	consensus Ubiquitin activating enzyme UBA1 [Posttr	99.87
KOG2016	523	consensus NEDD8-activating complex, APP-BP1/UBA5 c	99.78
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	99.76
KOG2337	669	consensus Ubiquitin activating E1 enzyme-like prot	99.52
COG4015	217	Predicted dinucleotide-utilizing enzyme of the Thi	98.69
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	98.23
PRK06719	157	precorrin-2 dehydrogenase; Validated	98.18
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	98.16
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.05
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.98
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.94
TIGR03882	193	cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydr	97.89
PF05237	84	MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 T	97.74
PRK05562	223	precorrin-2 dehydrogenase; Provisional	97.7
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.7
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	97.42
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.38
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	97.38
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.29
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.07
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.02
PRK10637	457	cysG siroheme synthase; Provisional	96.97
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.95
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.8
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.75
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.74
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	96.71
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.69
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.67
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.66
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.65
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.63
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.36
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.32
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	96.3
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.3
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.18
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.09
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.03
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.02
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.95
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.92
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.82
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.79
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.76
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.72
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.67
PRK09242	257	tropinone reductase; Provisional	95.62
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.57
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.52
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.43
PRK06392	326	homoserine dehydrogenase; Provisional	95.4
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.38
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	95.37
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.36
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.34
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.32
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.31
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.29
PLN00203	519	glutamyl-tRNA reductase	95.24
PRK06197	306	short chain dehydrogenase; Provisional	95.23
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.21
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	95.19
PRK08374	336	homoserine dehydrogenase; Provisional	95.15
PRK09496	453	trkA potassium transporter peripheral membrane com	95.12
PRK06270	341	homoserine dehydrogenase; Provisional	95.11
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.11
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	95.1
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.09
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.06
PRK14031	444	glutamate dehydrogenase; Provisional	95.03
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.98
PRK04148	134	hypothetical protein; Provisional	94.94
PRK13529	563	malate dehydrogenase; Provisional	94.94
PLN03129	581	NADP-dependent malic enzyme; Provisional	94.84
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.82
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	94.81
PRK08618	325	ornithine cyclodeaminase; Validated	94.78
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.76
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	94.74
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	94.69
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	94.64
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.61
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.59
PRK08251	248	short chain dehydrogenase; Provisional	94.58
PRK07523	255	gluconate 5-dehydrogenase; Provisional	94.57
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.54
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	94.53
PRK07576	264	short chain dehydrogenase; Provisional	94.53
PRK06141	314	ornithine cyclodeaminase; Validated	94.5
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.49
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	94.48
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.44
PRK10537	393	voltage-gated potassium channel; Provisional	94.42
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.41
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.41
PRK07062	265	short chain dehydrogenase; Provisional	94.4
PRK13403	335	ketol-acid reductoisomerase; Provisional	94.4
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	94.39
PTZ00117	319	malate dehydrogenase; Provisional	94.36
PRK08339	263	short chain dehydrogenase; Provisional	94.33
PRK07063	260	short chain dehydrogenase; Provisional	94.3
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.3
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	94.29
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.26
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.25
PTZ00317	559	NADP-dependent malic enzyme; Provisional	94.22
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	94.21
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.21
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	94.19
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.15
PRK07831	262	short chain dehydrogenase; Provisional	94.15
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.11
PRK09496	453	trkA potassium transporter peripheral membrane com	94.07
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.05
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.03
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	94.03
PLN03209	576	translocon at the inner envelope of chloroplast su	94.02
PRK06523	260	short chain dehydrogenase; Provisional	94.02
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	93.95
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.93
PRK12862	763	malic enzyme; Reviewed	93.93
PRK08306	296	dipicolinate synthase subunit A; Reviewed	93.91
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.89
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.88
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	93.88
PRK07340	304	ornithine cyclodeaminase; Validated	93.84
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	93.77
PRK05479	330	ketol-acid reductoisomerase; Provisional	93.77
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	93.76
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	93.75
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.74
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	93.7
PLN02427	386	UDP-apiose/xylose synthase	93.7
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
PLN02240	352	UDP-glucose 4-epimerase	93.64
PLN02477	410	glutamate dehydrogenase	93.63
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	93.59
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	93.57
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	93.55
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.54
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	93.5
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	93.49
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	93.46
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	93.44
PRK12827	249	short chain dehydrogenase; Provisional	93.42
PLN02214	342	cinnamoyl-CoA reductase	93.37
PLN02494	477	adenosylhomocysteinase	93.26
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.25
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	93.24
PRK13304	265	L-aspartate dehydrogenase; Reviewed	93.23
PRK06567	1028	putative bifunctional glutamate synthase subunit b	93.23
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.17
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	93.12
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.11
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	93.1
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.09
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.09
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.05
PRK12861	764	malic enzyme; Reviewed	93.05
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	93.04
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	93.0
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.0
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.98
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	92.95
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	92.89
PRK05867	253	short chain dehydrogenase; Provisional	92.87
PRK09414	445	glutamate dehydrogenase; Provisional	92.8
PRK14030	445	glutamate dehydrogenase; Provisional	92.79
PRK06194	287	hypothetical protein; Provisional	92.77
PRK05854	313	short chain dehydrogenase; Provisional	92.77
PLN02206	442	UDP-glucuronate decarboxylase	92.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	92.74
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	92.68
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	92.68
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	92.66
PRK08291	330	ectoine utilization protein EutC; Validated	92.62
PRK06181	263	short chain dehydrogenase; Provisional	92.58
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.53
PRK06349	426	homoserine dehydrogenase; Provisional	92.53
CHL00194	317	ycf39 Ycf39; Provisional	92.51
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	92.48
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.46
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	92.46
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.46
PLN02572	442	UDP-sulfoquinovose synthase	92.43
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.42
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.4
PLN02740	381	Alcohol dehydrogenase-like	92.39
PRK05872	296	short chain dehydrogenase; Provisional	92.37
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.36
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	92.26
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.25
PRK08213	259	gluconate 5-dehydrogenase; Provisional	92.2
PRK07478	254	short chain dehydrogenase; Provisional	92.19
PRK07680	273	late competence protein ComER; Validated	92.14
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	92.14
PRK06949	258	short chain dehydrogenase; Provisional	92.11
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.1
PRK05875	276	short chain dehydrogenase; Provisional	92.07
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.07
PRK09186	256	flagellin modification protein A; Provisional	92.06
PRK06138	252	short chain dehydrogenase; Provisional	92.04
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	92.03
PLN02852	491	ferredoxin-NADP+ reductase	92.02
PRK05866	293	short chain dehydrogenase; Provisional	92.01
PRK12829	264	short chain dehydrogenase; Provisional	91.98
TIGR00036	266	dapB dihydrodipicolinate reductase.	91.93
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	91.9
PRK12320	699	hypothetical protein; Provisional	91.84
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	91.84
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	91.81
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	91.8
PRK06139	330	short chain dehydrogenase; Provisional	91.7
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	91.68
PRK12939	250	short chain dehydrogenase; Provisional	91.65
PRK06125	259	short chain dehydrogenase; Provisional	91.62
PRK10669	558	putative cation:proton antiport protein; Provision	91.61
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	91.59
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	91.57
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	91.48
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	91.47
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	91.46
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	91.45
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	91.41
PRK06223	307	malate dehydrogenase; Reviewed	91.39
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.38
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	91.36
PF02571	249	CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro:	91.33
PRK13303	265	L-aspartate dehydrogenase; Provisional	91.33
PRK15059	292	tartronate semialdehyde reductase; Provisional	91.33
PRK09291	257	short chain dehydrogenase; Provisional	91.3
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	91.28
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.16
PRK14982	340	acyl-ACP reductase; Provisional	91.11
PRK06128	300	oxidoreductase; Provisional	91.11
PLN02602	350	lactate dehydrogenase	91.11
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	91.08
PLN02695	370	GDP-D-mannose-3',5'-epimerase	91.04
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	90.96
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	90.92
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	90.91
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	90.91
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	90.82
PLN02253	280	xanthoxin dehydrogenase	90.8
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	90.79
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	90.77
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	90.72
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	90.66
PLN02780	320	ketoreductase/ oxidoreductase	90.63
PLN00016	378	RNA-binding protein; Provisional	90.63
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	90.6
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	90.6
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	90.58
PRK07825	273	short chain dehydrogenase; Provisional	90.55
PRK09135	249	pteridine reductase; Provisional	90.54
PRK07035	252	short chain dehydrogenase; Provisional	90.53
PRK00811	283	spermidine synthase; Provisional	90.48
PRK13018	378	cell division protein FtsZ; Provisional	90.47
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	90.47
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	90.38
PLN02166	436	dTDP-glucose 4,6-dehydratase	90.38
TIGR00065	349	ftsZ cell division protein FtsZ. This family consi	90.38
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	90.37
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	90.37
PRK06940	275	short chain dehydrogenase; Provisional	90.36
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	90.31
PRK05855	582	short chain dehydrogenase; Validated	90.29
PRK07814	263	short chain dehydrogenase; Provisional	90.28
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.27
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	90.26
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.25
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	90.23
PRK06172	253	short chain dehydrogenase; Provisional	90.21
PRK07326	237	short chain dehydrogenase; Provisional	90.19
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.17
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	90.16
PRK11730	715	fadB multifunctional fatty acid oxidation complex	90.14
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	90.12
PLN02827	378	Alcohol dehydrogenase-like	90.1
PRK06124	256	gluconate 5-dehydrogenase; Provisional	90.09
PRK06179	270	short chain dehydrogenase; Provisional	90.06
PLN03139	386	formate dehydrogenase; Provisional	89.97
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.96
PTZ00431	260	pyrroline carboxylate reductase; Provisional	89.93
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	89.92
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	89.92
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	89.91
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	89.9
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	89.89
PLN02650	351	dihydroflavonol-4-reductase	89.88
PRK12367	245	short chain dehydrogenase; Provisional	89.86
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	89.84
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.84
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	89.78
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	89.77
PLN02688	266	pyrroline-5-carboxylate reductase	89.74
PRK10538	248	malonic semialdehyde reductase; Provisional	89.66
PLN00106	323	malate dehydrogenase	89.64
PRK08264	238	short chain dehydrogenase; Validated	89.63
PRK09072	263	short chain dehydrogenase; Provisional	89.6
PRK06196	315	oxidoreductase; Provisional	89.54
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.44
COG0673	342	MviM Predicted dehydrogenases and related proteins	89.43
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	89.41
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	89.4
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	89.39
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	89.35
PTZ00188	506	adrenodoxin reductase; Provisional	89.34
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	89.34
PRK07109	334	short chain dehydrogenase; Provisional	89.33
PRK08324	681	short chain dehydrogenase; Validated	89.29
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.28
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	89.28
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	89.26
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	89.25
PRK08226	263	short chain dehydrogenase; Provisional	89.21
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	89.16
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	89.05
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	89.04
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	89.01
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	88.99
PF10087	97	DUF2325: Uncharacterized protein conserved in bact	88.96
PRK10675	338	UDP-galactose-4-epimerase; Provisional	88.94
PRK08265	261	short chain dehydrogenase; Provisional	88.94
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.89
PRK13984	604	putative oxidoreductase; Provisional	88.86
PRK07806	248	short chain dehydrogenase; Provisional	88.85
PRK07067	257	sorbitol dehydrogenase; Provisional	88.81
cd02201	304	FtsZ_type1 FtsZ is a GTPase that is similar to the	88.74
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	88.69
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	88.69
PRK13243	333	glyoxylate reductase; Reviewed	88.68
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	88.67
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	88.66
PRK07453	322	protochlorophyllide oxidoreductase; Validated	88.65
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.63
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	88.62
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	88.55
PLN02503	605	fatty acyl-CoA reductase 2	88.52
PRK05650	270	short chain dehydrogenase; Provisional	88.51
PRK12480	330	D-lactate dehydrogenase; Provisional	88.47
PRK08589	272	short chain dehydrogenase; Validated	88.47
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.39
COG0300	265	DltE Short-chain dehydrogenases of various substra	88.34
PTZ00325	321	malate dehydrogenase; Provisional	88.28
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.27
PRK06198	260	short chain dehydrogenase; Provisional	88.26
PRK08643	256	acetoin reductase; Validated	88.23
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	88.17
PRK08300	302	acetaldehyde dehydrogenase; Validated	88.14
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	88.13
PRK07074	257	short chain dehydrogenase; Provisional	88.11
PRK08278	273	short chain dehydrogenase; Provisional	88.09
PLN02896	353	cinnamyl-alcohol dehydrogenase	88.07
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	88.04
PRK07677	252	short chain dehydrogenase; Provisional	88.03
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	88.02
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	88.01
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	87.96
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	87.93
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	87.88
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	87.87
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	87.83
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	87.79
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	87.77
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	87.71
PRK06185	407	hypothetical protein; Provisional	87.71
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	87.7
TIGR01746	367	Thioester-redct thioester reductase domain. It has	87.69
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	87.68
PRK12814	652	putative NADPH-dependent glutamate synthase small	87.68
PRK07454	241	short chain dehydrogenase; Provisional	87.61
PLN02928	347	oxidoreductase family protein	87.6
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	87.58
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	87.58
PRK06545	359	prephenate dehydrogenase; Validated	87.57
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	87.53
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	87.5
PRK07856	252	short chain dehydrogenase; Provisional	87.49
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	87.46
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	87.45
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	87.35
PRK06184	502	hypothetical protein; Provisional	87.33
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	87.3
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	87.29
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	87.27
PRK09330	384	cell division protein FtsZ; Validated	87.21
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	87.19
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	87.18
PRK08818	370	prephenate dehydrogenase; Provisional	87.18
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	87.18
PRK06046	326	alanine dehydrogenase; Validated	87.16
PRK07102	243	short chain dehydrogenase; Provisional	87.14
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	87.12
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	87.05
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	87.05
PRK06182	273	short chain dehydrogenase; Validated	87.04
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	87.04
PTZ00075	476	Adenosylhomocysteinase; Provisional	87.0
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	86.95
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	86.94
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	86.87
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	86.86
PRK07097	265	gluconate 5-dehydrogenase; Provisional	86.8
PRK12744	257	short chain dehydrogenase; Provisional	86.78
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	86.78
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	86.77
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	86.77
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	86.69
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	86.65
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	86.63
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	86.62
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	86.58
PRK06841	255	short chain dehydrogenase; Provisional	86.51
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	86.48
PRK08277	278	D-mannonate oxidoreductase; Provisional	86.39
PRK05717	255	oxidoreductase; Validated	86.37
PRK08309	177	short chain dehydrogenase; Provisional	86.3
PRK06500	249	short chain dehydrogenase; Provisional	86.25
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	86.25
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	86.21
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	86.16
PRK08013	400	oxidoreductase; Provisional	86.12
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	86.05
PRK06057	255	short chain dehydrogenase; Provisional	86.03
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	86.03
PRK09126	392	hypothetical protein; Provisional	86.0
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	85.93
PLN02256	304	arogenate dehydrogenase	85.88
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	85.81
PRK06436	303	glycerate dehydrogenase; Provisional	85.81
PRK11728	393	hydroxyglutarate oxidase; Provisional	85.69
PRK07236	386	hypothetical protein; Provisional	85.67
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	85.67
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	85.56
COG2099	257	CobK Precorrin-6x reductase [Coenzyme metabolism]	85.49
PRK08862	227	short chain dehydrogenase; Provisional	85.45
KOG2250	514	consensus Glutamate/leucine/phenylalanine/valine d	85.44
PRK07060	245	short chain dehydrogenase; Provisional	85.33
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	85.32
PRK08655	437	prephenate dehydrogenase; Provisional	85.28
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	85.27
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	85.25
PRK08340	259	glucose-1-dehydrogenase; Provisional	85.23
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	85.21
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	85.21
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	85.21
PRK07832	272	short chain dehydrogenase; Provisional	85.2
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	85.19
PLN02586	360	probable cinnamyl alcohol dehydrogenase	85.18
PRK12831	464	putative oxidoreductase; Provisional	85.17

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-101  Score=742.69  Aligned_cols=416  Identities=53%  Similarity=0.857  Sum_probs=373.9

Q ss_pred             ccchhHHHHHhHHHHHHHHHHHHHHH-HHhhcccccccCCCCCCCCCCCCCCccccchhHHHHHHhhhhHhhcCHHHHHH
Q 013180            3 ETGKLKSLALLGTGAVLGSVSTVFLY-KLLSRNIARSHSKNVPNCMTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQK   81 (448)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~Rq~~~~G~~~q~k   81 (448)
                      .+++|. |  +++||++..+++..+. .|...... ...+..    +  ....-..||+++++||++||+.|||+++|+|
T Consensus         2 ~k~twk-l--i~ttal~~v~~t~~~~ta~k~~k~s-~a~~~~----k--~~sk~~~ydd~lireqLarN~aFfGee~m~k   71 (430)
T KOG2018|consen    2 AKNTWK-L--IATTALISVFSTQLALTAGKGIKLS-TAPDKN----K--NGSKPRQYDDELIREQLARNYAFFGEEGMEK   71 (430)
T ss_pred             CcchHH-H--HHHHHHHHHHHHHHHHHhhhhheec-ccCCcc----c--CCCCcccccHHHHHHHHHhHHhhhhhhHHHH
Confidence            455666 5  7899999999987764 44433221 111111    0  0111148999999999999999999999999


Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      |+++.|+||||||||||++.+|+||||++|+|||+|+|++|+||||.+++.+|||.||+.|++++++++.|||+|++.+.
T Consensus        72 l~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~~  151 (430)
T KOG2018|consen   72 LTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARNM  151 (430)
T ss_pred             hcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhh
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRK  241 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~  241 (448)
                      .++.++.++++.+++|+||||+||+++++.|.+||+.+++++|+++|+++|+||||++|+||+++..||++|++|++||+
T Consensus       152 l~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~GaaaksDPTrv~v~Dis~t~~DPlsR~vRrrLrk  231 (430)
T KOG2018|consen  152 LWTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTRVNVADISETEEDPLSRSVRRRLRK  231 (430)
T ss_pred             hcCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCccccCCCceeehhhccccccCcHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCccCCeeEEeCCCCC---cccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCC
Q 013180          242 DYGIEGGIPVVFSLEKP---KAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQT  318 (448)
Q Consensus       242 ~~g~~g~i~~v~s~e~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~  318 (448)
                       +||.+|||||||.|+|   +++++|+++++++++++.+++++|+||+|++|||||||+|||.++|+++|..|+++|+++
T Consensus       232 -~GI~~GIpVVFS~Ekpdprka~lLp~~d~e~erg~~delsav~dfrvRilPvlGtmP~iFGltiat~vlt~ia~~pmep  310 (430)
T KOG2018|consen  232 -RGIEGGIPVVFSLEKPDPRKAKLLPLEDEEGERGNVDELSAVPDFRVRILPVLGTMPGIFGLTIATYVLTQIAQYPMEP  310 (430)
T ss_pred             -hccccCCceEEecCCCCccccccCCCCccccccCChhhhhhccchhhhhcccccCcchHHHHHHHHHHHHHHhcCCCCc
Confidence             9999999999999998   788999999999999999999999999999999999999999999999999999999886


Q ss_pred             CccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHHHhcCCCcCCCCccccccccccccCceEEeecCCCC
Q 013180          319 EPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKELWHGRSAWEHSAKDVGRGMWRSVNELMLVRWDREK  398 (448)
Q Consensus       319 ~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLveEvwrgrS~~s~~~~~~~~~~~~~~~~L~l~RWd~~~  398 (448)
                      ....+ |.+.|+.++++|++ +..++|.+...+++.+||.||+||+|+|||++++.++          .+|+|+|||+++
T Consensus       311 i~~~n-rlk~Yd~i~q~l~~-e~~r~g~n~er~l~leev~YiVeEv~~GrS~i~~~st----------~kltlvrWd~~k  378 (430)
T KOG2018|consen  311 IENKN-RLKHYDLIHQRLIE-EMTRYGTNAERELDLEEVSYIVEEVFHGRSAISGTST----------DKLTLVRWDAKK  378 (430)
T ss_pred             ccccc-hhHHHHHHHHHHHH-HHHHhCCCccccccHHHHHHHHHHHHcCCCCCCCccc----------ceeEEEeecCCC
Confidence            65555 89999999999999 5777887766699999999999999999999999853          499999999999


Q ss_pred             CCCCCcEEEeCHHHHHHHhccCchhhhcchhHHHHHHHHHHHH
Q 013180          399 PATVSNLVLLKFKEADEHESRTLDDIKEKEPAFFERVTSVLKR  441 (448)
Q Consensus       399 p~~~~Nlvllt~~Ea~~He~~~~~~~~~~~~~~~~~v~~~~~~  441 (448)
                      |+++.|+|+||++||+.||+++|++..+.+..+.++|-..+..
T Consensus       379 p~sltNlVlltk~Ea~~HE~rvL~~~~~~~tvy~e~Vl~vv~~  421 (430)
T KOG2018|consen  379 PISLTNLVLLTKNEADEHEDRVLEEVEELETVYFERVLCVVKK  421 (430)
T ss_pred             CcceeeeEEeechHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence            9999999999999999999988777666655555555444433

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=100.00  E-value=1.2e-58  Score=437.50  Aligned_cols=248  Identities=35%  Similarity=0.572  Sum_probs=224.6

Q ss_pred             HHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHH
Q 013180           61 EVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKA  140 (448)
Q Consensus        61 e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv  140 (448)
                      +.+++||.|+.+|+|+++++||++++|+|+|+||||||++++|+|+|||+|+|||.|.|+.+|+|||..+...+||++|+
T Consensus         7 ~~~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv   86 (263)
T COG1179           7 DAYRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV   86 (263)
T ss_pred             HHHHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEE
Q 013180          141 LCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRV  220 (448)
Q Consensus       141 ~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i  220 (448)
                      +++++|+++|||+|+|+++..+++++|.++++..+||+||||+|++.+|..|..+|+++++|+|++||+|++.||||++|
T Consensus        87 ~vm~eri~~InP~c~V~~~~~f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~k~DPTri~v  166 (263)
T COG1179          87 EVMKERIKQINPECEVTAINDFITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGGKLDPTRIQV  166 (263)
T ss_pred             HHHHHHHHhhCCCceEeehHhhhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccCCCCCceEEe
Confidence            99999999999999999999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             cccccccCChhhHHHHHHHhhhc--CccCCeeEEeCCCCCccc----CCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180          221 ADLRESTNDPLSRAVMHRLRKDY--GIEGGIPVVFSLEKPKAK----LLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS  294 (448)
Q Consensus       221 ~di~~~~~dpl~~~~r~~l~~~~--g~~g~i~~v~s~e~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~  294 (448)
                      .||++|..|||++.+|++||+ .  |+.-|+|||||.|+|.+.    .++..+.+.+  .     .......+.+|++++
T Consensus       167 ~DiskT~~DPLa~~vR~~LRk-~~~~~~~gi~vVfS~E~~~~P~~d~~~~~~~~~~~--~-----~~~~~c~~~~gs~~~  238 (263)
T COG1179         167 ADISKTIQDPLAAKVRRKLRK-RFPKIKFGVPVVFSTENPVYPQADGSVCAIDATAE--S-----AKRLDCARGLGSATF  238 (263)
T ss_pred             eechhhccCcHHHHHHHHHHH-hccCCccCCceEecCCCCCCCcccccccccchhhc--c-----chhhhhhcCCCcccc
Confidence            999999999999999999999 6  788889999999988532    1111111001  1     112223456899999


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCC
Q 013180          295 IPAIFGMVMASHVVTQLAERQV  316 (448)
Q Consensus       295 ~~~i~G~~~A~~vi~~l~g~~~  316 (448)
                      +|++||+.+|++||+.|+.++.
T Consensus       239 Vta~fGl~~as~vv~~i~~~~~  260 (263)
T COG1179         239 VTAVFGLVAASEVVKKILDKKA  260 (263)
T ss_pred             cchHHHHHHHHHHHHHHHhhhc
Confidence            9999999999999999998763

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=100.00  E-value=6.2e-53  Score=413.38  Aligned_cols=253  Identities=29%  Similarity=0.463  Sum_probs=219.1

Q ss_pred             cchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC
Q 013180           57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG  136 (448)
Q Consensus        57 ~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG  136 (448)
                      +++++.  +||+||.++||+++|++|++++|+|+|+|||||++|++|+|+|||+|+|+|+|.|+.+|||||+++..+|||
T Consensus         5 ~~~~~~--~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG   82 (268)
T PRK15116          5 ISDAWR--QRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVG   82 (268)
T ss_pred             CCHHHH--HHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcC
Confidence            444444  899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                      ++|++++++++.++||+++|+++...+++++.++++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||+
T Consensus        83 ~~Kve~~~~rl~~INP~~~V~~i~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~  162 (268)
T PRK15116         83 LAKAEVMAERIRQINPECRVTVVDDFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPT  162 (268)
T ss_pred             hHHHHHHHHHHHhHCCCcEEEEEecccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCC
Confidence            99999999999999999999999888888888888865699999999999999999999999999999999999999999


Q ss_pred             ceEEcccccccCChhhHHHHHHHhhhcCcc------CCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccc-cC
Q 013180          217 RIRVADLRESTNDPLSRAVMHRLRKDYGIE------GGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVR-II  289 (448)
Q Consensus       217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~------g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  289 (448)
                      +++|.||+++..|||++.+|++||+.+|+.      .+++||||.|.|.....+-..  ..  .+..........|+ ..
T Consensus       163 ~~~~~di~~t~~~pla~~~R~~lr~~~~~~~~~~~~~~~~~v~S~E~~~~~~~~~~~--~~--~~~~~~~~~~~~c~~~~  238 (268)
T PRK15116        163 QIQVVDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQADGSV--CA--MKSTAEGPKRMDCASGF  238 (268)
T ss_pred             eEEEEeeecccCChHHHHHHHHHHHhhCCCcccCccCCeEEEeCCCcCCCCCccccc--cc--ccccccccccccCCCCC
Confidence            999999999999999999999999988986      579999999988653211000  00  00000001112232 44


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          290 PVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       290 pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      +++..+|++||+++|.+||+.|++.+
T Consensus       239 gs~~~v~~~~G~~~a~~vi~~l~~~~  264 (268)
T PRK15116        239 GAATMVTATFGFVAVSHALKKMMAKA  264 (268)
T ss_pred             CcceehhHHHHHHHHHHHHHHHHhhh
Confidence            77789999999999999999998653

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=100.00  E-value=1.4e-52  Score=403.92  Aligned_cols=231  Identities=44%  Similarity=0.705  Sum_probs=207.9

Q ss_pred             cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        74 ~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      ||+++|++|++++|+|+||||+||+++++|+|+|||+|+|+|+|.|+++|||||++++.+|+|++|+++++++|+++||+
T Consensus         1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~   80 (231)
T cd00755           1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE   80 (231)
T ss_pred             CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhH
Q 013180          154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR  233 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~  233 (448)
                      ++|+++...+++++..+++..++|+||||+|++..+..|+++|+++++|+|+++|+|++.||++++|.||+++..|||++
T Consensus        81 ~~V~~~~~~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~  160 (231)
T cd00755          81 CEVDAVEEFLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLAR  160 (231)
T ss_pred             cEEEEeeeecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHH
Confidence            99999999999988888887669999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHH
Q 013180          234 AVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV  308 (448)
Q Consensus       234 ~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi  308 (448)
                      .+|++||+ .|+..+++||||.|.|.....+....  +.. +.......+.+++..|+++.+|++||+++|++||
T Consensus       161 ~~R~~Lrk-~~~~~~~~~v~S~E~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~gs~~~vp~~~G~~~a~~vi  231 (231)
T cd00755         161 KVRKRLRK-RGIFFGVPVVYSTEPPDPPKADELVC--GDE-VGADAALQGLRRAGLGSASTVPAVFGLAIASEVI  231 (231)
T ss_pred             HHHHHHHH-cCCCCCeEEEeCCCCCCCCccccccc--ccc-ccccccccCCCCCCCCcceechHHHHHHHHHhhC
Confidence            99999999 88877799999999987643322111  011 1222233456667889999999999999999985

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08223 hypothetical protein; Validated

Probab=100.00  E-value=3.8e-47  Score=374.34  Aligned_cols=258  Identities=23%  Similarity=0.283  Sum_probs=201.7

Q ss_pred             HHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180           63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC  142 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~  142 (448)
                      ++|+|+||+.++|+++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||++|+++
T Consensus         6 ~~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~   85 (287)
T PRK08223          6 YDEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEV   85 (287)
T ss_pred             HHHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHH
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEE
Q 013180          143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARADPTRIRV  220 (448)
Q Consensus       143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i  220 (448)
                      ++++++++||+++|++++..++++++.+++.+ +|+||||+||+  ++|+.+|++|+++++|+|+++.            
T Consensus        86 a~~~l~~iNP~v~V~~~~~~l~~~n~~~ll~~-~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~------------  152 (287)
T PRK08223         86 LAEMVRDINPELEIRAFPEGIGKENADAFLDG-VDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAP------------  152 (287)
T ss_pred             HHHHHHHHCCCCEEEEEecccCccCHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEec------------
Confidence            99999999999999999999999999999986 99999999986  8999999999999999999874            


Q ss_pred             cccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC-CCCC-CCCC--------CC--CCCCCCcc-----CC
Q 013180          221 ADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL-PFTG-PSGE--------DE--NPSDYQMV-----PG  283 (448)
Q Consensus       221 ~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~-~~~~-~~~~--------~~--~~~~~~~~-----~~  283 (448)
                                            .|+.|++.+++ ++.||++|+ |.++ ...+        ..  ++.+.+++     -+
T Consensus       153 ----------------------~g~~gqv~v~~-p~~p~~~~~f~~~~~~~~~~~~~~~~~~~~p~c~~~gvl~~~~~~~  209 (287)
T PRK08223        153 ----------------------LGMGTALLVFD-PGGMSFDDYFDLSDGMNEVEKAVRFLAGLAPSMLHRGYLADPSRVD  209 (287)
T ss_pred             ----------------------cCCeEEEEEEc-CCCCchhhhcCCCCCCCchhhhcccCCcCCCccccCCccccccccc
Confidence                                  45567665554 458999877 3311 1100        01  11112222     01


Q ss_pred             cccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHH
Q 013180          284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAK  362 (448)
Q Consensus       284 ~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLve  362 (448)
                      +.-+..|..|++|+++|++||.|+||.|+|..   +++...+.-+|+..-.++... ...+|  .+-|++.--+.|+.+
T Consensus       210 ~~~~~~p~~g~~~g~~g~~~a~E~ik~l~g~g---~~~~~~~~~~~d~~~~~~~~~-~~~~g--~~~p~q~~~~~~~~~  282 (287)
T PRK08223        210 LENRTGPSTGLACQLCAGVVATEVLKILLGRG---RVYAAPWFHQFDAYRSRYVRT-WRPGG--NRHPLQRLKRRLLRR  282 (287)
T ss_pred             cccccCCCccchHHHHHHHHHHHHHHHHhCCC---CcCCCCeEEEEEcCCceEEEE-EecCC--CCCHHHHHHHHHHHH
Confidence            22234466699999999999999999999975   222111333333333333332 12234  467888877777654

>PRK07411 hypothetical protein; Validated

Probab=100.00  E-value=2e-44  Score=372.37  Aligned_cols=213  Identities=30%  Similarity=0.455  Sum_probs=188.4

Q ss_pred             ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      .+.+++.  +||+||+.+  ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+
T Consensus        10 ~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~   87 (390)
T PRK07411         10 QLSKDEY--ERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTS   87 (390)
T ss_pred             cCCHHHH--HHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChH
Confidence            4556665  899999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      |||++||++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..||++|++.++|+|+++.     
T Consensus        88 dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~-----  161 (390)
T PRK07411         88 WVGKPKIESAKNRILEINPYCQVDLYETRLSSENALDILAP-YDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSI-----  161 (390)
T ss_pred             HCCCcHHHHHHHHHHHHCCCCeEEEEecccCHHhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-----
Confidence            99999999999999999999999999999998888888886 999999999999999999999999999999875     


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCccc
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG  293 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg  293 (448)
                                                   .|+.|++.++.+.++||++|+ ++... +.      ...+  .|...||+|
T Consensus       162 -----------------------------~g~~g~~~v~~~~~~~c~~c~-~~~~~-~~------~~~~--~c~~~gvlg  202 (390)
T PRK07411        162 -----------------------------FRFEGQATVFNYEGGPNYRDL-YPEPP-PP------GMVP--SCAEGGVLG  202 (390)
T ss_pred             -----------------------------ccCEEEEEEECCCCCCChHHh-cCCCC-Cc------ccCC--CCccCCcCc
Confidence                                         455676655545678999998 44321 00      1122  255779999


Q ss_pred             chHHHHHHHHHHHHHHHHHcCC
Q 013180          294 SIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       294 ~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      |+++++|+++|+|+||+|+|.+
T Consensus       203 ~~~~~~g~~~a~eaik~l~g~~  224 (390)
T PRK07411        203 ILPGIIGVIQATETIKIILGAG  224 (390)
T ss_pred             chHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999974

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=100.00  E-value=3.2e-44  Score=349.38  Aligned_cols=211  Identities=28%  Similarity=0.463  Sum_probs=184.5

Q ss_pred             ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      ++.++|+  +||+||+.+  ||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|++|||+||++++.+
T Consensus         4 ~l~~~~~--~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~   81 (245)
T PRK05690          4 ELSDEEM--LRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDA   81 (245)
T ss_pred             CCCHHHH--HHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChh
Confidence            4556665  899999986  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      |||++|+++++++|+++||+++|+++...+++++..+++.+ +|+||||+||++++..++++|+++++|+|+++..    
T Consensus        82 dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~~~~~~~~~~-~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~----  156 (245)
T PRK05690         82 TIGQPKVESARAALARINPHIAIETINARLDDDELAALIAG-HDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAI----  156 (245)
T ss_pred             hCCChHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhc-CCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeec----
Confidence            99999999999999999999999999999988888888876 9999999999999999999999999999997643    


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcc
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVL  292 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl  292 (448)
                                                    |+.|++.++.+.. +||++|+ ++...  +.         +..+...||+
T Consensus       157 ------------------------------g~~G~v~~~~~~~~~~c~~c~-~~~~~--~~---------~~~~~~~gv~  194 (245)
T PRK05690        157 ------------------------------RMEGQVTVFTYQDDEPCYRCL-SRLFG--EN---------ALTCVEAGVM  194 (245)
T ss_pred             ------------------------------cCCceEEEEecCCCCceeeec-cCCCC--CC---------CCCcccCCcc
Confidence                                          4456565555443 6999997 33211  10         0134567999


Q ss_pred             cchHHHHHHHHHHHHHHHHHcCC
Q 013180          293 GSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       293 g~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ||+++++|+++|+|+|++|+|..
T Consensus       195 ~~~~~~~~~~~a~e~ik~l~g~~  217 (245)
T PRK05690        195 APLVGVIGSLQAMEAIKLLTGYG  217 (245)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999974

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=5.8e-44  Score=364.83  Aligned_cols=207  Identities=29%  Similarity=0.413  Sum_probs=184.8

Q ss_pred             HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHH
Q 013180           64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL  141 (448)
Q Consensus        64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~  141 (448)
                      .+||+||+.+  ||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|+|++|++
T Consensus         6 ~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~   85 (355)
T PRK05597          6 IARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAE   85 (355)
T ss_pred             HhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHH
Confidence            4899999999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEc
Q 013180          142 CLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVA  221 (448)
Q Consensus       142 ~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~  221 (448)
                      +++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..++++|+++++|+|+++.             
T Consensus        86 ~a~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~-~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~-------------  151 (355)
T PRK05597         86 SAREAMLALNPDVKVTVSVRRLTWSNALDELRD-ADVILDGSDNFDTRHLASWAAARLGIPHVWASI-------------  151 (355)
T ss_pred             HHHHHHHHHCCCcEEEEEEeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-------------
Confidence            999999999999999999999998888888886 999999999999999999999999999999875             


Q ss_pred             ccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHH
Q 013180          222 DLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGM  301 (448)
Q Consensus       222 di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~  301 (448)
                                           .|+.|++.++.+.++||++|+ ++......       ..+  .|...||+||+++++|+
T Consensus       152 ---------------------~g~~g~v~~~~~~~~~~~~~~-~~~~~~~~-------~~~--~c~~~gv~g~~~~~~g~  200 (355)
T PRK05597        152 ---------------------LGFDAQLSVFHAGHGPIYEDL-FPTPPPPG-------SVP--SCSQAGVLGPVVGVVGS  200 (355)
T ss_pred             ---------------------ecCeEEEEEEcCCCCCCHHHh-CCCCCCcc-------CCC--CccccCcchhHHHHHHH
Confidence                                 456677766656678999987 43321000       111  24567999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 013180          302 VMASHVVTQLAERQ  315 (448)
Q Consensus       302 ~~A~~vi~~l~g~~  315 (448)
                      ++|+|+||+|+|..
T Consensus       201 ~~a~e~ik~l~g~~  214 (355)
T PRK05597        201 AMAMEALKLITGVG  214 (355)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999964

>PRK08328 hypothetical protein; Provisional

Probab=100.00  E-value=1.1e-43  Score=342.90  Aligned_cols=206  Identities=28%  Similarity=0.495  Sum_probs=183.2

Q ss_pred             chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180           58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT  137 (448)
Q Consensus        58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~  137 (448)
                      .++|+  +||+||+.+||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|+|+
T Consensus         3 ~~~~~--~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~   80 (231)
T PRK08328          3 SEREL--ERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGK   80 (231)
T ss_pred             CHHHH--HHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCc
Confidence            34555  8999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          138 -PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       138 -~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                       +|+++++++++++||+++|+++...+++++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..       
T Consensus        81 ~~k~~~a~~~l~~~np~v~v~~~~~~~~~~~~~~~l~~-~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~-------  152 (231)
T PRK08328         81 NPKPLSAKWKLERFNSDIKIETFVGRLSEENIDEVLKG-VDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVE-------  152 (231)
T ss_pred             hHHHHHHHHHHHHhCCCCEEEEEeccCCHHHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeec-------
Confidence             6999999999999999999999988888888888875 9999999999999999999999999999998764       


Q ss_pred             ceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchH
Q 013180          217 RIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIP  296 (448)
Q Consensus       217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~  296 (448)
                                                 |+.|++.++.+.++||++|+ ++... +             .....|++||++
T Consensus       153 ---------------------------g~~G~v~~~~p~~~~c~~~~-~~~~~-~-------------~~~~~~~~~~~~  190 (231)
T PRK08328        153 ---------------------------GTYGQVTTIVPGKTKRLREI-FPKVK-K-------------KKGKFPILGATA  190 (231)
T ss_pred             ---------------------------cCEEEEEEECCCCCCCHHHh-CCCCC-C-------------ccccCCcCchHH
Confidence                                       45566777777788998876 33211 0             012358999999


Q ss_pred             HHHHHHHHHHHHHHHHcCC
Q 013180          297 AIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       297 ~i~G~~~A~~vi~~l~g~~  315 (448)
                      +++|+++|+|+||+|+|.+
T Consensus       191 ~ii~~~~a~e~~k~l~g~~  209 (231)
T PRK08328        191 GVIGSIQAMEVIKLITGYG  209 (231)
T ss_pred             HHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999974

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=100.00  E-value=4e-43  Score=363.11  Aligned_cols=213  Identities=30%  Similarity=0.442  Sum_probs=187.1

Q ss_pred             ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      .+..+|+  +||+||+.+  ||.++|+||++++|+||||||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+
T Consensus        14 ~l~~~~~--~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~   91 (392)
T PRK07878         14 ELTRDEV--ARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQS   91 (392)
T ss_pred             CCCHHHH--HHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChh
Confidence            4666776  999999988  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      |||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+.+|..+|++|+++++|+|+++.     
T Consensus        92 diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~-----  165 (392)
T PRK07878         92 DVGRSKAQSARDSIVEINPLVNVRLHEFRLDPSNAVELFSQ-YDLILDGTDNFATRYLVNDAAVLAGKPYVWGSI-----  165 (392)
T ss_pred             cCCChHHHHHHHHHHHhCCCcEEEEEeccCChhHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe-----
Confidence            99999999999999999999999999999998888888876 999999999999999999999999999999875     


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeC----CCCCcccCCCCCCCCCCCCCCCCCCccCCcccccC
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFS----LEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII  289 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s----~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (448)
                                                   .|+.|++.++++    ..+||++|+ +++.. ..      ...+  .|...
T Consensus       166 -----------------------------~g~~G~v~~~~~~~~~~~~~c~~c~-~~~~~-~~------~~~~--~~~~~  206 (392)
T PRK07878        166 -----------------------------YRFEGQASVFWEDAPDGLGLNYRDL-YPEPP-PP------GMVP--SCAEG  206 (392)
T ss_pred             -----------------------------ccCEEEEEEEecCCCCCCCCeeeee-cCCCC-Cc------cCCC--CCccC
Confidence                                         456676665553    257899997 33211 00      1122  24567


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          290 PVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       290 pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ||+||+++++|+++|+|+||+|+|.+
T Consensus       207 gv~g~~~~~~g~~~a~e~ik~l~g~~  232 (392)
T PRK07878        207 GVLGVLCASIGSIMGTEAIKLITGIG  232 (392)
T ss_pred             CccchHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999964

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=100.00  E-value=4.7e-43  Score=359.41  Aligned_cols=213  Identities=29%  Similarity=0.439  Sum_probs=186.7

Q ss_pred             ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      .+.++|.  +||+||+.+  ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|++|||+||++|+.+
T Consensus        13 ~~~~~e~--~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~   90 (370)
T PRK05600         13 QLPTSEL--RRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGAS   90 (370)
T ss_pred             CCCHHHH--HHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChh
Confidence            4556665  899999998  999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      |||++|+++++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..+|++|+++++|+|+++.     
T Consensus        91 diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~-----  164 (370)
T PRK05600         91 DVGRPKVEVAAERLKEIQPDIRVNALRERLTAENAVELLNG-VDLVLDGSDSFATKFLVADAAEITGTPLVWGTV-----  164 (370)
T ss_pred             HCCCHHHHHHHHHHHHHCCCCeeEEeeeecCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE-----
Confidence            99999999999999999999999999999998888888886 999999999999999999999999999999875     


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC---CCcccCCCCCCCCCCCCCCCCCCccCCcccccCC
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE---KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP  290 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  290 (448)
                                                   .|+.|++.++.+..   .||++|+ +++.. +.      ...+  .|...|
T Consensus       165 -----------------------------~g~~G~v~v~~~~~~~~~~~~~~l-~~~~~-~~------~~~~--~c~~~g  205 (370)
T PRK05600        165 -----------------------------LRFHGELAVFNSGPDHRGVGLRDL-FPEQP-SG------DSIP--DCATAG  205 (370)
T ss_pred             -----------------------------ecCEEEEEEEecCCCCCCCCcHhh-CCCCC-cc------ccCC--CCccCC
Confidence                                         45567666554432   5788877 43311 00      1122  245779


Q ss_pred             cccchHHHHHHHHHHHHHHHHHcCC
Q 013180          291 VLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       291 vlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      |+||+++++|+++|+|+||+|+|.+
T Consensus       206 vlg~~~~~ig~~~a~eaik~l~g~g  230 (370)
T PRK05600        206 VLGATTAVIGALMATEAIKFLTGIG  230 (370)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999973

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=100.00  E-value=9.8e-43  Score=337.88  Aligned_cols=204  Identities=25%  Similarity=0.436  Sum_probs=177.7

Q ss_pred             HHhhhhHhhc--CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180           65 EQLTRNIQFF--GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC  142 (448)
Q Consensus        65 e~~~Rq~~~~--G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~  142 (448)
                      +||+||+++|  |.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++|||||++++++|||++|+++
T Consensus         3 ~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~   82 (240)
T TIGR02355         3 LRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVES   82 (240)
T ss_pred             cceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHH
Confidence            7999999985  68999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcc
Q 013180          143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD  222 (448)
Q Consensus       143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~d  222 (448)
                      ++++|+++||+++|+++...++.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++..|            
T Consensus        83 a~~~l~~inp~v~i~~~~~~i~~~~~~~~~~~-~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g------------  149 (240)
T TIGR02355        83 AKDALTQINPHIAINPINAKLDDAELAALIAE-HDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR------------  149 (240)
T ss_pred             HHHHHHHHCCCcEEEEEeccCCHHHHHHHhhc-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc------------
Confidence            99999999999999999999988888888876 99999999999999999999999999999977543            


Q ss_pred             cccccCChhhHHHHHHHhhhcCccCCeeEE-eCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHH
Q 013180          223 LRESTNDPLSRAVMHRLRKDYGIEGGIPVV-FSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGM  301 (448)
Q Consensus       223 i~~~~~dpl~~~~r~~l~~~~g~~g~i~~v-~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~  301 (448)
                                            +.|++.++ ++...||++|+. +.  +.+..         ..+...|++||+++++|+
T Consensus       150 ----------------------~~G~v~~~~~~~~~~c~~C~~-~~--~~~~~---------~~~~~~gv~~p~~~~~~~  195 (240)
T TIGR02355       150 ----------------------MEGQVSVFTYQDGEPCYRCLS-RL--FGENA---------LSCVEAGVMAPVVGVVGS  195 (240)
T ss_pred             ----------------------cEeEEEEEecCCCCCcccccc-cc--CCCCC---------CCccccCccchHHHHHHH
Confidence                                  34544333 345578999872 11  00000         123456999999999999


Q ss_pred             HHHHHHHHHHHcCC
Q 013180          302 VMASHVVTQLAERQ  315 (448)
Q Consensus       302 ~~A~~vi~~l~g~~  315 (448)
                      ++|+|+|++|+|.+
T Consensus       196 ~~a~e~ik~l~g~~  209 (240)
T TIGR02355       196 LQAMEAIKVLAGIG  209 (240)
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999874

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=100.00  E-value=7.6e-43  Score=330.52  Aligned_cols=199  Identities=31%  Similarity=0.476  Sum_probs=177.5

Q ss_pred             HhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHH
Q 013180           66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL  143 (448)
Q Consensus        66 ~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~  143 (448)
                      ||+||+++  ||.++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+++||+||++|+++|+|++|++++
T Consensus         1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~   80 (202)
T TIGR02356         1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA   80 (202)
T ss_pred             CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence            69999998  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEccc
Q 013180          144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL  223 (448)
Q Consensus       144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di  223 (448)
                      +++++++||+++++++...++.++..+++.+ +|+||+|+||++++..++++|+++++|+|+++..              
T Consensus        81 ~~~l~~~np~v~i~~~~~~i~~~~~~~~~~~-~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~--------------  145 (202)
T TIGR02356        81 AQRLRELNSDIQVTALKERVTAENLELLINN-VDLVLDCTDNFATRYLINDACVALGTPLISAAVV--------------  145 (202)
T ss_pred             HHHHHHhCCCCEEEEehhcCCHHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence            9999999999999999998888888888875 9999999999999999999999999999998753              


Q ss_pred             ccccCChhhHHHHHHHhhhcCccCCeeEEeCC-CCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHH
Q 013180          224 RESTNDPLSRAVMHRLRKDYGIEGGIPVVFSL-EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMV  302 (448)
Q Consensus       224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~  302 (448)
                                          |+.|++.++.+. ++||+.|+ +++.  .+.       .+  .+...|++||+++++|++
T Consensus       146 --------------------g~~G~~~~~~p~~~~~c~~c~-~~~~--~~~-------~~--~~~~~~~~~~~~~~~~~~  193 (202)
T TIGR02356       146 --------------------GFGGQLMVFDPGGEGPCLRCL-FPDI--ADT-------GP--SCATAGVIGPVVGVIGSL  193 (202)
T ss_pred             --------------------cCeEEEEEEeCCCCCCChhhc-CCCC--ccc-------CC--CCccCCccchHHHHHHHH
Confidence                                455666666666 68999998 3331  111       11  135679999999999999


Q ss_pred             HHHHHHHHH
Q 013180          303 MASHVVTQL  311 (448)
Q Consensus       303 ~A~~vi~~l  311 (448)
                      +|+|+||+|
T Consensus       194 ~a~e~~k~l  202 (202)
T TIGR02356       194 QALEALKLL  202 (202)
T ss_pred             HHHHHHHhC
Confidence            999999975

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.2e-43  Score=347.83  Aligned_cols=217  Identities=29%  Similarity=0.439  Sum_probs=193.8

Q ss_pred             CCccccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccccc
Q 013180           52 IPALDLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAV  129 (448)
Q Consensus        52 ~~~~~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l  129 (448)
                      +....+..+|+  .||+||+.+  ||..||.+|++++|+||||||+||+++.+|+.+|||+|.|||+|.||.|||+||.+
T Consensus        34 ~~~~~Ls~dei--~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVl  111 (427)
T KOG2017|consen   34 SREAGLSLDEI--LRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVL  111 (427)
T ss_pred             ccccCCCHHHH--HhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHh
Confidence            34456888888  999999976  99999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          130 ATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       130 ~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      ++++.+|++|+++++..++++||.++|+.+.++++.+|+.+++.+ ||+|+|||||+.+|+.|+++|+..|+|+|++++ 
T Consensus       112 h~ea~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~Ii~~-YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSa-  189 (427)
T KOG2017|consen  112 HTEARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFDIIKQ-YDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSA-  189 (427)
T ss_pred             hhhhhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHHHhhc-cceEEEcCCCccchhhhhhHHHHcCCccccccc-
Confidence            999999999999999999999999999999999999999999996 999999999999999999999999999999876 


Q ss_pred             CCccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccC
Q 013180          210 GARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII  289 (448)
Q Consensus       210 G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (448)
                                                       .++.||+.+.--...|||+|+ ||.+..    |   +..  .+|...
T Consensus       190 ---------------------------------Lr~EGQLtvYny~~GPCYRCl-FP~Ppp----~---~~v--t~C~dg  226 (427)
T KOG2017|consen  190 ---------------------------------LRWEGQLTVYNYNNGPCYRCL-FPNPPP----P---EAV--TNCADG  226 (427)
T ss_pred             ---------------------------------ccccceeEEeecCCCceeeec-CCCCcC----h---HHh--cccccC
Confidence                                             456688765434678999998 544321    0   011  235667


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          290 PVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       290 pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      +|+||++|++|.|+|-|+||.++|..
T Consensus       227 GVlGpv~GviG~mQALE~iKli~~~~  252 (427)
T KOG2017|consen  227 GVLGPVTGVIGCMQALETIKLIAGIG  252 (427)
T ss_pred             ceeecchhhhhHHHHHHHHHHHHccC
Confidence            99999999999999999999999965

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=100.00  E-value=5.7e-42  Score=330.16  Aligned_cols=204  Identities=35%  Similarity=0.521  Sum_probs=180.2

Q ss_pred             HhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHH
Q 013180           66 QLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCL  143 (448)
Q Consensus        66 ~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~  143 (448)
                      ||+||+++  ||.++|++|++++|+|+||||+||++|++|+++|||+|+|+|+|.|+++|||||++++.+|+|++|++++
T Consensus         1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~   80 (228)
T cd00757           1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA   80 (228)
T ss_pred             CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence            69999999  9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEccc
Q 013180          144 KKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL  223 (448)
Q Consensus       144 ~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di  223 (448)
                      +++++++||+++|+.+...++.++..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..              
T Consensus        81 ~~~l~~~np~~~i~~~~~~i~~~~~~~~~~~-~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~--------------  145 (228)
T cd00757          81 AERLRAINPDVEIEAYNERLDAENAEELIAG-YDLVLDCTDNFATRYLINDACVKLGKPLVSGAVL--------------  145 (228)
T ss_pred             HHHHHHhCCCCEEEEecceeCHHHHHHHHhC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec--------------
Confidence            9999999999999999988888888888876 9999999999999999999999999999998653              


Q ss_pred             ccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHH
Q 013180          224 RESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM  303 (448)
Q Consensus       224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~  303 (448)
                                          |+.|.+.++.+.+++|+.|+ +.... +.+         .-.+...|+++|.++++|+++
T Consensus       146 --------------------g~~g~v~~~~p~~~~c~~c~-~~~~~-~~~---------~~~~~~~~~~~~~~~~~a~l~  194 (228)
T cd00757         146 --------------------GFEGQVTVFIPGEGPCYRCL-FPEPP-PPG---------VPSCAEAGVLGPLVGVIGSLQ  194 (228)
T ss_pred             --------------------cCEEEEEEECCCCCCCcccc-CCCCC-CCC---------CCccccCCcchhHHHHHHHHH
Confidence                                34455555666778999987 32211 000         011345699999999999999


Q ss_pred             HHHHHHHHHcCC
Q 013180          304 ASHVVTQLAERQ  315 (448)
Q Consensus       304 A~~vi~~l~g~~  315 (448)
                      |+|+|++|+|.+
T Consensus       195 a~e~i~~l~g~~  206 (228)
T cd00757         195 ALEALKILLGIG  206 (228)
T ss_pred             HHHHHHHHhCCC
Confidence            999999999985

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=100.00  E-value=1.7e-41  Score=344.44  Aligned_cols=205  Identities=27%  Similarity=0.402  Sum_probs=182.3

Q ss_pred             HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc--CchH
Q 013180           64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV--GTPK  139 (448)
Q Consensus        64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv--G~~K  139 (448)
                      .+||+||+.+  ||.++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|+++||+||++++.+|+  |++|
T Consensus         2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K   81 (339)
T PRK07688          2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK   81 (339)
T ss_pred             cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence            4799999987  99999999999999999999999999999999999999999999999999999999999999  4699


Q ss_pred             HHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceE
Q 013180          140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR  219 (448)
Q Consensus       140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~  219 (448)
                      +++++++++++||+++|+++...++.++..+++.+ +|+||||+||+.++..++++|+++++|+|+++..|         
T Consensus        82 a~aa~~~l~~inp~v~v~~~~~~~~~~~~~~~~~~-~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g---------  151 (339)
T PRK07688         82 AVAAKKRLEEINSDVRVEAIVQDVTAEELEELVTG-VDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVG---------  151 (339)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHHcC-CCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeee---------
Confidence            99999999999999999999998988888888875 99999999999999999999999999999987543         


Q ss_pred             EcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHH
Q 013180          220 VADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF  299 (448)
Q Consensus       220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~  299 (448)
                                               ..|+.+++++.++||++|+ ++...      .     ++..|...+++||+++++
T Consensus       152 -------------------------~~G~~~~~~p~~~pC~~Cl-~~~~~------~-----~~~~c~~~gv~~p~~~~i  194 (339)
T PRK07688        152 -------------------------SYGLSYTIIPGKTPCLRCL-LQSIP------L-----GGATCDTAGIISPAVQIV  194 (339)
T ss_pred             -------------------------eeeEEEEECCCCCCCeEee-cCCCC------C-----CCCCCccCCcccHHHHHH
Confidence                                     3455666777778999987 33211      0     012345679999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 013180          300 GMVMASHVVTQLAERQ  315 (448)
Q Consensus       300 G~~~A~~vi~~l~g~~  315 (448)
                      |+++|+|+||+|+|.+
T Consensus       195 ~~~~a~ealk~l~g~~  210 (339)
T PRK07688        195 ASYQVTEALKLLVGDY  210 (339)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999974

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=100.00  E-value=2e-41  Score=343.72  Aligned_cols=205  Identities=25%  Similarity=0.361  Sum_probs=182.4

Q ss_pred             HHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC--chH
Q 013180           64 AEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG--TPK  139 (448)
Q Consensus        64 ~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG--~~K  139 (448)
                      .+||+||+++  ||+++|++|++++|+||||||+||++|++|+++|||+|+|||+|.|++|||+||++|+++|+|  ++|
T Consensus         2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K   81 (338)
T PRK12475          2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK   81 (338)
T ss_pred             cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence            4799999987  899999999999999999999999999999999999999999999999999999999999985  899


Q ss_pred             HHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceE
Q 013180          140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIR  219 (448)
Q Consensus       140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~  219 (448)
                      |++++++++++||+++|+++...++.++.++++.+ +|+||||+||++++..+|++|+++++|+|+++..|         
T Consensus        82 a~aa~~~l~~inp~v~i~~~~~~~~~~~~~~~~~~-~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g---------  151 (338)
T PRK12475         82 AIAAKEHLRKINSEVEIVPVVTDVTVEELEELVKE-VDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVG---------  151 (338)
T ss_pred             HHHHHHHHHHHCCCcEEEEEeccCCHHHHHHHhcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc---------
Confidence            99999999999999999999988888888888875 99999999999999999999999999999987643         


Q ss_pred             EcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHH
Q 013180          220 VADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIF  299 (448)
Q Consensus       220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~  299 (448)
                                               ..|.++++.+.++||++|+ ++...      .     .+..|...|++||+++++
T Consensus       152 -------------------------~~G~~~~~~P~~tpC~~Cl-~~~~p------~-----~~~~c~~~Gvl~p~v~~i  194 (338)
T PRK12475        152 -------------------------SYGVTYTIIPGKTPCLRCL-MEHVP------V-----GGATCDTAGIIQPAVQIV  194 (338)
T ss_pred             -------------------------cEEEEEEECCCCCCCHHHh-cCCCC------C-----CCCCCccCCcCchHHHHH
Confidence                                     3455666777889999998 33211      0     112355779999999999


Q ss_pred             HHHHHHHHHHHHHcCC
Q 013180          300 GMVMASHVVTQLAERQ  315 (448)
Q Consensus       300 G~~~A~~vi~~l~g~~  315 (448)
                      |+++|+|+||+|+|..
T Consensus       195 aslqa~EalK~L~g~~  210 (338)
T PRK12475        195 VAYQVTEALKILVEDF  210 (338)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999999864

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=100.00  E-value=9.7e-40  Score=336.38  Aligned_cols=211  Identities=29%  Similarity=0.473  Sum_probs=183.8

Q ss_pred             chhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180           58 LKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        58 ~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      ..+++  ++|+||+.+  ||.++|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+++||+||++++++||
T Consensus       109 s~~~~--~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~di  186 (376)
T PRK08762        109 TDEQD--ERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRV  186 (376)
T ss_pred             CHHHH--HHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhC
Confidence            34444  899999988  99999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP  215 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp  215 (448)
                      |++|+++++++++++||+++|+.+...++.++..+++.+ +|+||||+||+.+|..++++|+++++|+|+++..      
T Consensus       187 G~~Ka~~~~~~l~~~np~v~v~~~~~~~~~~~~~~~~~~-~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~------  259 (376)
T PRK08762        187 GQPKVDSAAQRLAALNPDVQVEAVQERVTSDNVEALLQD-VDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVF------  259 (376)
T ss_pred             CCcHHHHHHHHHHHHCCCCEEEEEeccCChHHHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec------
Confidence            999999999999999999999999988888888888875 9999999999999999999999999999998753      


Q ss_pred             CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC----CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCc
Q 013180          216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE----KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPV  291 (448)
Q Consensus       216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv  291 (448)
                                                  |+.|++.++.+..    +||++|+ ++....    +   ...|  .|...||
T Consensus       260 ----------------------------g~~g~v~~~~p~~~~~~~~c~~c~-~~~~~~----~---~~~~--~~~~~gv  301 (376)
T PRK08762        260 ----------------------------RFEGQVSVFDAGRQRGQAPCYRCL-FPEPPP----P---ELAP--SCAEAGV  301 (376)
T ss_pred             ----------------------------cCEEEEEEEeCCCCCCCCCCHhhc-CCCCCC----c---ccCC--CCccCCc
Confidence                                        4445555555544    7899997 332110    0   1122  2557799


Q ss_pred             ccchHHHHHHHHHHHHHHHHHcCC
Q 013180          292 LGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       292 lg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      +||+|+++|+++|+|+||+|+|.+
T Consensus       302 ~g~~~~~~~~~~a~e~~k~l~g~~  325 (376)
T PRK08762        302 LGVLPGVIGLLQATEAIKLLLGIG  325 (376)
T ss_pred             chhhHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999974

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=100.00  E-value=8.7e-40  Score=308.46  Aligned_cols=177  Identities=23%  Similarity=0.385  Sum_probs=160.5

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK  144 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~  144 (448)
                      ++|+||+++||.++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+.+||+||++++.+|+|++|+++++
T Consensus         2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~   81 (197)
T cd01492           2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL   81 (197)
T ss_pred             chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccc
Q 013180          145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLR  224 (448)
Q Consensus       145 ~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~  224 (448)
                      ++|+++||+++|+.+...++ ++..+++.+ +|+||+|+|+++++..++++|+++++|+|+++..|              
T Consensus        82 ~~L~~lNp~v~i~~~~~~~~-~~~~~~~~~-~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G--------------  145 (197)
T cd01492          82 ERLRALNPRVKVSVDTDDIS-EKPEEFFSQ-FDVVVATELSRAELVKINELCRKLGVKFYATGVHG--------------  145 (197)
T ss_pred             HHHHHHCCCCEEEEEecCcc-ccHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecC--------------
Confidence            99999999999999988777 345667765 99999999999999999999999999999988643              


Q ss_pred             cccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHH
Q 013180          225 ESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMA  304 (448)
Q Consensus       225 ~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A  304 (448)
                                          +.|.+.+.                               +       +||.++++|+++|
T Consensus       146 --------------------~~G~v~~d-------------------------------~-------~~p~~~~~~~~~~  167 (197)
T cd01492         146 --------------------LFGFVFAD-------------------------------L-------LAPVAAVVGGILA  167 (197)
T ss_pred             --------------------CEEEEEEe-------------------------------c-------cccHHHHHHHHHH
Confidence                                33422210                               0       6888999999999


Q ss_pred             HHHHHHHHcCC
Q 013180          305 SHVVTQLAERQ  315 (448)
Q Consensus       305 ~~vi~~l~g~~  315 (448)
                      +|++|.|+|.+
T Consensus       168 ~e~~k~~~~~~  178 (197)
T cd01492         168 QDVINALSKRE  178 (197)
T ss_pred             HHHHHHHhCCC
Confidence            99999999975

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=100.00  E-value=1.4e-38  Score=300.46  Aligned_cols=143  Identities=20%  Similarity=0.316  Sum_probs=134.7

Q ss_pred             HhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC--CccCchHHHHH
Q 013180           66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCL  143 (448)
Q Consensus        66 ~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~--~dvG~~Kv~~~  143 (448)
                      +|+||+++||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.  +|+|++|++++
T Consensus         1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~   80 (198)
T cd01485           1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS   80 (198)
T ss_pred             CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence            5999999999999999999999999999999999999999999999999999999999999999988  89999999999


Q ss_pred             HHHHhhhCCCceEEEEeccCC--ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          144 KKHFSSIFPECHIDAKVLLYD--ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       144 ~~~l~~inP~v~v~~~~~~~~--~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      +++|+++||+++|+++....+  .++..+++.. +|+||+|.|+++.+..++++|+++++|+|+++..
T Consensus        81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~-~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~  147 (198)
T cd01485          81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQK-FTLVIATEENYERTAKVNDVCRKHHIPFISCATY  147 (198)
T ss_pred             HHHHHHHCCCCEEEEEecccccchhhHHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEee
Confidence            999999999999999988765  4556677775 9999999999999999999999999999998753

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]

Probab=100.00  E-value=2.3e-37  Score=302.49  Aligned_cols=212  Identities=34%  Similarity=0.524  Sum_probs=185.6

Q ss_pred             chhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180           58 LKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        58 ~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      .+.++  ++|+||+.+  +|.++|++|++++|+|+|+||+||+++++|+++|||+++|+|+|+|+.+||+||++|+.+|+
T Consensus         4 ~~~~~--~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~di   81 (254)
T COG0476           4 SDEEI--ERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADV   81 (254)
T ss_pred             cHHHH--HhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeeccccc
Confidence            34444  999999998  55566999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP  215 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp  215 (448)
                      |++|+++++++++++||.++++++...++.+++.+++.. +|+|+||+||+++|+.+|++|+++++|+++++.       
T Consensus        82 g~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~~~~~~~~~~-~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~-------  153 (254)
T COG0476          82 GKPKAEVAAKALRKLNPLVEVVAYLERLDEENAEELIAQ-FDVVLDCTDNFETRYLINDACVKLGIPLVHGGA-------  153 (254)
T ss_pred             CCcHHHHHHHHHHHhCCCCeEEEeecccChhhHHHHhcc-CCEEEECCCCHHHHHHHHHHHHHhCCCeEeeee-------
Confidence            999999999999999999999999999999999888876 999999999999999999999999999999875       


Q ss_pred             CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180          216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS  294 (448)
Q Consensus       216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~  294 (448)
                                                 .|+.|++.++.+.+ .||++|+ ++........+       . .|...+|+|+
T Consensus       154 ---------------------------~~~~g~~~~~~~~~~~~c~~~~-~~~~~~~~~~~-------~-~c~~~gv~~~  197 (254)
T COG0476         154 ---------------------------IGFEGQVTVIIPGDKTPCYRCL-FPEKPPPGLVP-------T-SCDEAGVLGP  197 (254)
T ss_pred             ---------------------------ccceEEEEEEecCCCCCccccc-CCCCCCccccc-------c-ccccCCcccc
Confidence                                       45567777777774 8999987 33211111000       0 2567899999


Q ss_pred             hHHHHHHHHHHHHHHHHHcCC
Q 013180          295 IPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       295 ~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      .++++|.++|.++++.++|.+
T Consensus       198 ~~~~~~~~~~~~~~k~~~g~~  218 (254)
T COG0476         198 LVGVVGSLQALEAIKLLTGIG  218 (254)
T ss_pred             ccchhhhHHHHHHHHHhcCCC
Confidence            999999999999999999986

>PRK07877 hypothetical protein; Provisional

Probab=100.00  E-value=6e-37  Score=334.83  Aligned_cols=274  Identities=24%  Similarity=0.265  Sum_probs=210.3

Q ss_pred             cchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCcc
Q 013180           57 LLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        57 ~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      +.++++.++||+||+.+||+++|++|++++|+||||| +||.+|.+|+++|| |+|+|+|+|.|++|||||| +|+..|+
T Consensus        80 ~~~~~~~~~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~di  157 (722)
T PRK07877         80 LGPREFRAVRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDL  157 (722)
T ss_pred             CCHHHhhHHHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhc
Confidence            4578888999999999999999999999999999997 99999999999996 9999999999999999998 5899999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP  215 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp  215 (448)
                      |++||++++++|+++||+++|+++...++++|.++++.+ +|+||||+||+++|+.||++|++++||+|++++.+++.||
T Consensus       158 G~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~-~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~g~~~~  236 (722)
T PRK07877        158 GVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDG-LDVVVEECDSLDVKVLLREAARARRIPVLMATSDRGLLDV  236 (722)
T ss_pred             ccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCcCc
Confidence            999999999999999999999999999999999999986 9999999999999999999999999999999999988888


Q ss_pred             CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCC--------CCCCCCCCCc-------
Q 013180          216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSG--------EDENPSDYQM-------  280 (448)
Q Consensus       216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~--------~~~~~~~~~~-------  280 (448)
                      +++.+..                                 +.||+.|+ ++....        ++..|.-+..       
T Consensus       237 e~~~~~p---------------------------------~~pc~~cl-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  282 (722)
T PRK07877        237 ERFDLEP---------------------------------DRPILHGL-LGDIDAAKLAGLSTKDKVPHVLRILDAEALS  282 (722)
T ss_pred             ceeeeCC---------------------------------CCceeecc-CCCCChhhhccCChhccCcceeeeccccccC
Confidence            7664422                                 23333333 111000        0001110000       


Q ss_pred             --------cCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCccccccHHHHHHHHHHHhhhHHhh-----hCCC
Q 013180          281 --------VPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVNMDVDHYRLLHQRLTEHEESL-----YGTA  347 (448)
Q Consensus       281 --------~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~~~~~~y~~~~~~l~~~~~~~-----~~~~  347 (448)
                              -.+-.+..-|-|+....+-|++.|..+.++++|.+.....+.. +.+   ..+..+.......     .+..
T Consensus       283 ~r~~~s~~~~~~~~~~~pql~~~~~~~~~~~~~~~~~i~l~~~~~sgr~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~  358 (722)
T PRK07877        283 ARMAASLVEVDQTLSTWPQLASDVVLGAAAVAEAVRRIGLGEPLESGRVRV-DLD---ELLDRLDDPPPPPSGAGWEAES  358 (722)
T ss_pred             HHHHHHHHhccCccccCCchHHHHHhhHHHHHHHHHHHHcCCcCCCCCEEe-cHH---HhhccccCCccccccccccccc
Confidence                    0012234558888889999999999999999999877655543 332   2222222111111     1111


Q ss_pred             ---------CccccCHHHHHHHHHHHhcCCCcC
Q 013180          348 ---------KEVQVDVEEVMYVAKELWHGRSAW  371 (448)
Q Consensus       348 ---------~~~~i~~~DV~yLveEvwrgrS~~  371 (448)
                               .....+.+++..|++--...-|..
T Consensus       359 ~~~~~~~~~~~~~~~~~~l~~iv~aa~~APS~~  391 (722)
T PRK07877        359 APPAPPADRAAEALPQDALEIVAAAAIRAPSGG  391 (722)
T ss_pred             CCCCccccccccCCCHHHHHHHHHHHHhCcCcC
Confidence                     111357889999999888777763

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=100.00  E-value=1.2e-36  Score=290.25  Aligned_cols=197  Identities=27%  Similarity=0.333  Sum_probs=164.0

Q ss_pred             hhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHH
Q 013180           67 LTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH  146 (448)
Q Consensus        67 ~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~  146 (448)
                      +.+....||.++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+.+||+||+++ .+|+|++|+++++++
T Consensus        11 ~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~a~~~   89 (212)
T PRK08644         11 EAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEALKEN   89 (212)
T ss_pred             HHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHHHHHH
Confidence            3344456999999999999999999999999999999999999999999999999999999865 789999999999999


Q ss_pred             HhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceEEccccc
Q 013180          147 FSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRE  225 (448)
Q Consensus       147 l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~G~k~dpt~i~i~di~~  225 (448)
                      ++++||+++++++...++.++..+++.+ +|+||||+||+++|..+++.|+++ ++|+|++++.++...+.         
T Consensus        90 l~~lnp~v~v~~~~~~i~~~~~~~~~~~-~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~---------  159 (212)
T PRK08644         90 LLEINPFVEIEAHNEKIDEDNIEELFKD-CDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSN---------  159 (212)
T ss_pred             HHHHCCCCEEEEEeeecCHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCce---------
Confidence            9999999999999999988888888875 999999999999999999999999 99999997766543221         


Q ss_pred             ccCChhhHHHHHHHhhhcCccCCeeEEeCCC--CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHH
Q 013180          226 STNDPLSRAVMHRLRKDYGIEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVM  303 (448)
Q Consensus       226 ~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~  303 (448)
                                               .+.+.+  .+|+ +.|  +..    .         ..+...|++||+++++|+++
T Consensus       160 -------------------------~~~~~~~~~~~~-~~~--~~~----~---------~~~~~~gv~~~~~~~i~~~~  198 (212)
T PRK08644        160 -------------------------SIKTRRIGKNFY-IVG--DFV----T---------EAKPGNPLMAPRVNIAAAHQ  198 (212)
T ss_pred             -------------------------EEEecCCCCCee-ECC--CCC----c---------ccCCCCCccchHHHHHHHHH
Confidence                                     122211  1222 111  100    0         01224589999999999999


Q ss_pred             HHHHHHHHHcCC
Q 013180          304 ASHVVTQLAERQ  315 (448)
Q Consensus       304 A~~vi~~l~g~~  315 (448)
                      |+|+||+|+|.+
T Consensus       199 a~ealk~l~~~~  210 (212)
T PRK08644        199 ANLVLRLILGEE  210 (212)
T ss_pred             HHHHHHHHhCCC
Confidence            999999999975

>PRK14851 hypothetical protein; Provisional

Probab=100.00  E-value=7.2e-36  Score=325.52  Aligned_cols=239  Identities=24%  Similarity=0.345  Sum_probs=189.0

Q ss_pred             chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180           58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT  137 (448)
Q Consensus        58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~  137 (448)
                      ..++...++|+||+.+||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|++||||||++++.+|||+
T Consensus        17 ~~~~~~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~   96 (679)
T PRK14851         17 SAAEYREAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR   96 (679)
T ss_pred             CHHHHHHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC
Confidence            34566679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCC--HHHHHHHHHHHHHcCCcEEEEcCCCCcc--
Q 013180          138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAGARA--  213 (448)
Q Consensus       138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn--~~~r~~l~~~c~~~~ip~I~~~g~G~k~--  213 (448)
                      +|+++++++++++||.++|+++...++.++.++++.+ +|+||||+|+  +++|..|++.|++++||+|+++..|..+  
T Consensus        97 ~Kv~v~~~~l~~inP~~~I~~~~~~i~~~n~~~~l~~-~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~  175 (679)
T PRK14851         97 PKLAVMKEQALSINPFLEITPFPAGINADNMDAFLDG-VDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAM  175 (679)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEEecCCChHHHHHHHhC-CCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceE
Confidence            9999999999999999999999999999999999986 9999999997  5689999999999999999988766543  


Q ss_pred             ---CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCC
Q 013180          214 ---DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP  290 (448)
Q Consensus       214 ---dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  290 (448)
                         +|....+.+......|  ....++-||...|+.- -|...       .   +-          +.+.+ ++..+.-|
T Consensus       176 ~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~p-~~~~~-------~---~~----------d~~~~-~l~~~~~~  231 (679)
T PRK14851        176 LVFTPQGMGFDDYFNIGGK--MPEEQKYLRFAMGLAP-RPTHI-------K---YM----------DLSKV-DLKGGKGP  231 (679)
T ss_pred             EEEcCCCCCHhHhccCCCC--CChHHHHHHHHhcCCC-cchhh-------c---cC----------cHhhc-CCccCcCC
Confidence               4544444444443332  2233444444333321 00000       0   00          11112 44445567


Q ss_pred             cccchHHHHHHHHHHHHHHHHHcC-CCCCCcc
Q 013180          291 VLGSIPAIFGMVMASHVVTQLAER-QVQTEPI  321 (448)
Q Consensus       291 vlg~~~~i~G~~~A~~vi~~l~g~-~~~~~~~  321 (448)
                      +++.-+....++.+.+++++|.|+ +..+.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  263 (679)
T PRK14851        232 SLNIACQLCSGMAGTEAVRIILGKGGLRPVPC  263 (679)
T ss_pred             CccHHHHhhhhhHHHHHHHHhhcCCeeeccch
Confidence            778888888999999999999885 4445554

>PRK14852 hypothetical protein; Provisional

Probab=100.00  E-value=4.6e-36  Score=331.89  Aligned_cols=236  Identities=23%  Similarity=0.282  Sum_probs=186.4

Q ss_pred             chhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180           58 LKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT  137 (448)
Q Consensus        58 ~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~  137 (448)
                      .-++...++|+||+.+||.++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++++.+|||+
T Consensus       306 ~~~~~~~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~  385 (989)
T PRK14852        306 TRDAYTDIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGR  385 (989)
T ss_pred             HHHHHHHHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCC
Confidence            34666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180          138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRGLKVLCATGAGARADP  215 (448)
Q Consensus       138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~ip~I~~~g~G~k~dp  215 (448)
                      +|+++++++++++||+++|+++...+++++.++++.+ +|+||||+|++  +.+..+++.|++++||+|+++..|.    
T Consensus       386 ~Kaevaa~~l~~INP~v~I~~~~~~I~~en~~~fl~~-~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~----  460 (989)
T PRK14852        386 GKLDVMTERALSVNPFLDIRSFPEGVAAETIDAFLKD-VDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY----  460 (989)
T ss_pred             hHHHHHHHHHHHHCCCCeEEEEecCCCHHHHHHHhhC-CCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc----
Confidence            9999999999999999999999999999999999986 99999999985  5678889999999999999887554    


Q ss_pred             CceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC-CCCCCCC-----------CCCCCCCCCcc--
Q 013180          216 TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL-PFTGPSG-----------EDENPSDYQMV--  281 (448)
Q Consensus       216 t~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~-~~~~~~~-----------~~~~~~~~~~~--  281 (448)
                                                    .|++.+ |.+..+|+.|+ ++++...           ....|..+..+  
T Consensus       461 ------------------------------~g~v~v-~~p~~~~~~~~f~~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~  509 (989)
T PRK14852        461 ------------------------------SCALLV-FMPGGMNFDSYFGIDDDTPPMEGYLRFGMGLAPRPAHLGYMDR  509 (989)
T ss_pred             ------------------------------CeeEEE-EcCCCCCHHHhCCCCCCCchHhhhhhhhccCCcchhhhcccCc
Confidence                                          343332 22333555443 2211000           00001111111  


Q ss_pred             --CCcccccCCcccchHHHHHHHHHHHHHHHHHcC-CCCCCccccccHHHHH
Q 013180          282 --PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER-QVQTEPIVNMDVDHYR  330 (448)
Q Consensus       282 --~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~-~~~~~~~~~~~~~~y~  330 (448)
                        -++..+.-|.++..+.+-++++|.+++|+++|+ +....|... .++.|.
T Consensus       510 ~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~~~~~~p~~~-qfd~~~  560 (989)
T PRK14852        510 RFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRRGIRPVPYFR-QFDPLT  560 (989)
T ss_pred             ccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCCccccCcchh-ccchhh
Confidence              023345679999999999999999999999997 334444332 444443

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=100.00  E-value=1.3e-35  Score=293.51  Aligned_cols=141  Identities=22%  Similarity=0.321  Sum_probs=133.1

Q ss_pred             HhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHH
Q 013180           66 QLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK  145 (448)
Q Consensus        66 ~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~  145 (448)
                      .|+||+++||.++|+||++++|+|+||||+|+++|++|+++||++|+|+|+|.|+.+||+||++++++|||++|++++++
T Consensus         1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~   80 (286)
T cd01491           1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA   80 (286)
T ss_pred             CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          146 HFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       146 ~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +|+++||+++|+++...++.    +++.. +|+||+|.|+++.+..+|++|+++++|+|+++..|.
T Consensus        81 ~L~eLNp~V~V~~~~~~~~~----~~l~~-fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~  141 (286)
T cd01491          81 RLAELNPYVPVTVSTGPLTT----DELLK-FQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGL  141 (286)
T ss_pred             HHHHHCCCCEEEEEeccCCH----HHHhc-CCEEEEecCCHHHHHHHHHHHHHcCCEEEEEecccc
Confidence            99999999999998876443    45554 999999999999999999999999999999987765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=100.00  E-value=1.3e-34  Score=287.00  Aligned_cols=227  Identities=21%  Similarity=0.274  Sum_probs=167.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      ||+||||||+||+++++|+++|||+|+|+|+|+|+.||||||+||+.+|||++|+++++++++++||+++|+++...+++
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999888875


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc--------CCcEEEEcCCCCccCCCceEEcccccccC---ChhhHH
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--------GLKVLCATGAGARADPTRIRVADLRESTN---DPLSRA  234 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~--------~ip~I~~~g~G~k~dpt~i~i~di~~~~~---dpl~~~  234 (448)
                      .+ .+++.+ +|+||+|+||+++|.++++.|.+.        ++|+|+++..|.++. .++.+++.+.++.   |+.+..
T Consensus        81 ~~-~~f~~~-fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~-v~vi~P~~t~C~~C~~d~~p~~  157 (291)
T cd01488          81 KD-EEFYRQ-FNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGH-ARVILPGITACIECSLDLFPPQ  157 (291)
T ss_pred             hh-HHHhcC-CCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEE-EEEEcCCCCCccccCCCCCCCC
Confidence            43 567765 999999999999999999988664        599999988776653 2455555544333   222221


Q ss_pred             HHHHHh--------hhcCccCCeeEEeCCCCCcccCCCCCCCCC----CC---------CCCCCCCccCCcccccCCccc
Q 013180          235 VMHRLR--------KDYGIEGGIPVVFSLEKPKAKLLPFTGPSG----ED---------ENPSDYQMVPGFRVRIIPVLG  293 (448)
Q Consensus       235 ~r~~l~--------~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~----~~---------~~~~~~~~~~~~~~~~~pvlg  293 (448)
                      ....+.        ..+.+.-...+.|+.|.|...+-+...+..    +.         -....+....++..+++|+++
T Consensus       158 ~~~p~Cti~~~P~~~~hci~~a~~~~~~~~~~~~~~~~d~~~~~~~i~~~a~~ra~~f~i~~~~~~~~~~v~~~iiPai~  237 (291)
T cd01488         158 VTFPLCTIANTPRLPEHCIEYASLIQWPKEFPFVPLDGDDPEHIEWLYQKALERAAQFNISGVTYSLTQGVVKRIIPAVA  237 (291)
T ss_pred             CCCCcccccCCCCCcchheeeeeeeecccccCCCcCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHhhhHheeeCccC
Confidence            111110        112222233344555544322211100000    00         001233456677889999999


Q ss_pred             chHHHHHHHHHHHHHHHHHcCC
Q 013180          294 SIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       294 ~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ++++||++++++|++|.+++..
T Consensus       238 stnaiia~~~~~~~~k~~~~~~  259 (291)
T cd01488         238 STNAIIAAACCLEALKIATDCY  259 (291)
T ss_pred             chHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999854

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family

Probab=100.00  E-value=1.8e-34  Score=290.41  Aligned_cols=203  Identities=14%  Similarity=0.065  Sum_probs=166.3

Q ss_pred             cchhHHHHHHhhhhHhh---cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC
Q 013180           57 LLKDEVVAEQLTRNIQF---FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR  132 (448)
Q Consensus        57 ~~~~e~~~e~~~Rq~~~---~G-~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~  132 (448)
                      +.++++  +||+||+.+   || +++|++|++++|+   |||+||.++.+|++ |||+|+|+|+|.|+.|||+  ++|+.
T Consensus        47 l~~~~~--~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~  118 (318)
T TIGR03603        47 LTKFNL--ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSK  118 (318)
T ss_pred             cCHHHH--HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhCh
Confidence            445555  899999987   55 5689999999999   99999999999999 9999999999999999999  89999


Q ss_pred             CccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHH--HHHHHHHcCCcEEEEcCCC
Q 013180          133 ADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVA--LLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       133 ~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~--l~~~c~~~~ip~I~~~g~G  210 (448)
                      +|||++|+++++++|.++||.++|+.         ..+++.+ +|+||||+||+.+|+.  +|++|.++++|+|+++.  
T Consensus       119 ~diG~~K~~~a~~~L~~lnp~v~i~~---------~~~li~~-~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav--  186 (318)
T TIGR03603       119 EFILKKDIRDLTSNLDALELTKNVDE---------LKDLLKD-YNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFI--  186 (318)
T ss_pred             hhcCcHHHHHHHHHHHHhCCCCEEee---------HHHHhCC-CCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEE--
Confidence            99999999999999999999999975         3466765 9999999999999976  99999999999998764  


Q ss_pred             CccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCC-------CCCCCCCCCCCccCC
Q 013180          211 ARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGP-------SGEDENPSDYQMVPG  283 (448)
Q Consensus       211 ~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~-------~~~~~~~~~~~~~~~  283 (448)
                                                      .|+.|++-+++++++||++|+ ++..       .+....+......  
T Consensus       187 --------------------------------~g~~Gqv~~~~P~~t~C~~Cl-~~r~~~~~~~~~~~~~~~~~~~~~--  231 (318)
T TIGR03603       187 --------------------------------DGPFVFITCTLPPETGCFECL-ERRLLSRLDWRLYGVFTEYLVKAE--  231 (318)
T ss_pred             --------------------------------ccCEEEEEEEeCCCCCcHHHc-cchhhcccccccccccccccCCCC--
Confidence                                            355566666777789999998 2200       0000000000001  


Q ss_pred             cccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          284 FRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       284 ~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      -.+...||+||+++++|+++|+|++ .++|.+
T Consensus       232 ~~~~~~gv~gp~~giigsl~a~Eai-~i~g~g  262 (318)
T TIGR03603       232 NNVSTAELIFPLLNIKKNLVVSEIF-AIGSLG  262 (318)
T ss_pred             CCCccCCeehhHHHHHHHHHHHHHH-HHhCCC
Confidence            1355679999999999999999999 998864

Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=100.00  E-value=1.2e-32  Score=260.50  Aligned_cols=190  Identities=27%  Similarity=0.360  Sum_probs=156.2

Q ss_pred             hhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           72 QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        72 ~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      ..+|+++|++|++++|+|+||||+||++|++|+++||++|+|+|+|.|+++||+||+ |..+|+|++|+++++++++++|
T Consensus         9 ~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~-~~~~~iG~~Ka~~~~~~l~~in   87 (200)
T TIGR02354         9 ARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQ-YKASQVGEPKTEALKENISEIN   87 (200)
T ss_pred             HhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEccccccccc-CChhhCCCHHHHHHHHHHHHHC
Confidence            357899999999999999999999999999999999999999999999999999997 5678999999999999999999


Q ss_pred             CCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc--CCcEEEEcCCCCccCCCceEEcccccccCC
Q 013180          152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--GLKVLCATGAGARADPTRIRVADLRESTND  229 (448)
Q Consensus       152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~--~ip~I~~~g~G~k~dpt~i~i~di~~~~~d  229 (448)
                      |.++++++...++.++..+++.+ +|+||+|+||+++|..+++.|.+.  ..++++++|.++..++..+++         
T Consensus        88 p~~~i~~~~~~i~~~~~~~~~~~-~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~~g~~~~~~~~~---------  157 (200)
T TIGR02354        88 PYTEIEAYDEKITEENIDKFFKD-ADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGLAGYDDANSIKT---------  157 (200)
T ss_pred             CCCEEEEeeeeCCHhHHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEeccccCCCCceEEe---------
Confidence            99999999999999888888875 999999999999999877666554  567788777766554332211         


Q ss_pred             hhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHH
Q 013180          230 PLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVT  309 (448)
Q Consensus       230 pl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~  309 (448)
                                             .....+||.|-..+.   +             .+...|+++|.++++|+++|+++|+
T Consensus       158 -----------------------~~~~~~~~~~~~~~~---~-------------~~~~~g~~~p~v~~~a~~qa~~~l~  198 (200)
T TIGR02354       158 -----------------------RKISKHFYLCGDGKS---D-------------AKQGLGLMAPRVQICAAHQANLVLE  198 (200)
T ss_pred             -----------------------cccCCCEEEcCCCCC---c-------------ccCCCCCchhHHHHHHHHHHHHHHH
Confidence                                   112234555521110   0             1234599999999999999999998


Q ss_pred             HH
Q 013180          310 QL  311 (448)
Q Consensus       310 ~l  311 (448)
                      ++
T Consensus       199 ~~  200 (200)
T TIGR02354       199 LI  200 (200)
T ss_pred             hC
Confidence            74

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=100.00  E-value=2e-32  Score=308.78  Aligned_cols=203  Identities=21%  Similarity=0.284  Sum_probs=172.1

Q ss_pred             HHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCch
Q 013180           64 AEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTP  138 (448)
Q Consensus        64 ~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~  138 (448)
                      .+||+||+++||.++|++|++++|+||||||+||+++++|+++||     |+|+|+|+|.|+.||||||++|+.+|||++
T Consensus       399 ~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~  478 (1008)
T TIGR01408       399 GDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKP  478 (1008)
T ss_pred             hhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcH
Confidence            489999999999999999999999999999999999999999999     899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhCCCceEEEEeccCCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180          139 KALCLKKHFSSIFPECHIDAKVLLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD  214 (448)
Q Consensus       139 Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d  214 (448)
                      |+++++++++++||+++|+++...+++++.    .+++.+ +|+||+|+||+++|.++++.|+.+++|+|+++..     
T Consensus       479 Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~-~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~-----  552 (1008)
T TIGR01408       479 KSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEK-LDVVINALDNVEARRYVDSRCLAFLKPLLESGTL-----  552 (1008)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecc-----
Confidence            999999999999999999999998876432    455654 9999999999999999999999999999998764     


Q ss_pred             CCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccc
Q 013180          215 PTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGS  294 (448)
Q Consensus       215 pt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~  294 (448)
                                                   |+.|++.++.+..+.|+.|-+.+.   ++       .+|-|..+..|.   
T Consensus       553 -----------------------------G~~G~v~v~ip~~te~y~~~~d~~---~~-------~~P~Ctl~~~P~---  590 (1008)
T TIGR01408       553 -----------------------------GTKGNTQVVVPHLTESYGSSRDPP---EK-------EIPFCTLKSFPA---  590 (1008)
T ss_pred             -----------------------------CceeeEEEEeCCCcCCCCCCCCCC---CC-------CCCcccccCCCC---
Confidence                                         455667777776666777653221   11       245555555555   


Q ss_pred             hHHHHHHHHHHHHHHHHHcCC
Q 013180          295 IPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       295 ~~~i~G~~~A~~vi~~l~g~~  315 (448)
                       .......+|.+....+++.+
T Consensus       591 -~~~h~i~wa~~~f~~~F~~~  610 (1008)
T TIGR01408       591 -AIEHTIQWARDKFEGLFSHK  610 (1008)
T ss_pred             -CchHHHHHHHHHHHHHHHhh
Confidence             34455667888888888865

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=100.00  E-value=3.1e-32  Score=252.27  Aligned_cols=171  Identities=29%  Similarity=0.386  Sum_probs=143.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      +|+|+||||+||+++++|+++||++|+|+|+|.|+.+||+||++ ..+|+|++|+++++++++++||+++++++...++.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~   79 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence            69999999999999999999999999999999999999999995 56899999999999999999999999999999988


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhcC
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYG  244 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g  244 (448)
                      ++..+++.+ +|+||+|+||+++|..+++.|.++ ++|+|++++.++.                                
T Consensus        80 ~~~~~~l~~-~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~--------------------------------  126 (174)
T cd01487          80 NNLEGLFGD-CDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGF--------------------------------  126 (174)
T ss_pred             hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhcc--------------------------------
Confidence            888888886 999999999999999888877776 9999998876543                                


Q ss_pred             ccCCeeEEeCCC--CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHH
Q 013180          245 IEGGIPVVFSLE--KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV  308 (448)
Q Consensus       245 ~~g~i~~v~s~e--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi  308 (448)
                        +++..+.+.+  .+|+.|++...+                .+...|++||+++++|+++|+|+|
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~g~~~~~~~~~~~~~~~e~~  174 (174)
T cd01487         127 --GDSNNIKTKKISDNFYICGDLVNE----------------AKEGLGLMAPRVNICAAHQANLVL  174 (174)
T ss_pred             --CCeEEEEecCCCCCeEEeecCCCC----------------CCCCcCccccHHHHHHHHHHHhhC
Confidence              2222222222  467777621110                023569999999999999999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=100.00  E-value=1.1e-31  Score=259.09  Aligned_cols=211  Identities=19%  Similarity=0.260  Sum_probs=162.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      ||+|||+||+||+++++|+++|||+|+|+|+|.|++||||||++|+.+|||++|+++++++++++||+++|+++...+++
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999888754


Q ss_pred             cc--hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhc
Q 013180          166 SS--EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDY  243 (448)
Q Consensus       166 ~~--~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~  243 (448)
                      ++  ..+++.+ +|+||+|+||+++|..++++|+++++|+|+++.                                  .
T Consensus        81 ~~~~~~~f~~~-~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~----------------------------------~  125 (234)
T cd01484          81 EQDFNDTFFEQ-FHIIVNALDNIIARRYVNGMLIFLIVPLIESGT----------------------------------E  125 (234)
T ss_pred             hhhchHHHHhC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc----------------------------------c
Confidence            32  2456665 999999999999999999999999999999875                                  4


Q ss_pred             CccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCCCCCcccc
Q 013180          244 GIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQVQTEPIVN  323 (448)
Q Consensus       244 g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~~~~~~~~  323 (448)
                      |+.|++.++.+..++|+.|.+.+.+   +       .+|.+..+..|..    .......|.++.-              
T Consensus       126 G~~G~v~vi~p~~t~c~~C~~~~~~---~-------~~p~Cti~~~P~~----~~hci~~a~~~~~--------------  177 (234)
T cd01484         126 GFKGNAQVILPGMTECIECTLYPPQ---K-------NFPMCTIASMPRL----PEHCIEWARMLQW--------------  177 (234)
T ss_pred             CCceEEEEEcCCCCCCcccCCCCCC---C-------CCCccccCCCCCC----chHHHHHHHHHHh--------------
Confidence            5567777788888899999853221   1       2455555555653    3334445555442              


Q ss_pred             ccHHHHHHHHHHHhhhHHhhhCCCCccccCHHHHHHHHHH
Q 013180          324 MDVDHYRLLHQRLTEHEESLYGTAKEVQVDVEEVMYVAKE  363 (448)
Q Consensus       324 ~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~DV~yLveE  363 (448)
                      -+..+.+.++..=..+ .+.|+..   +++..++.-++..
T Consensus       178 d~~~~~~~i~~~a~~r-a~~~~i~---~~~~~~~~~i~~~  213 (234)
T cd01484         178 DDPEHIQFIFQASNER-ASQYNIR---GVTYFLTKGVAGR  213 (234)
T ss_pred             CCHHHHHHHHHHHHHH-HHHcCCC---CcCHHHHHHHhcC
Confidence            1444555555544443 2234442   3566666666543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=100.00  E-value=5.2e-32  Score=288.53  Aligned_cols=208  Identities=20%  Similarity=0.223  Sum_probs=159.4

Q ss_pred             cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc---CchHHHHHHHHHhhh
Q 013180           74 FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSSI  150 (448)
Q Consensus        74 ~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv---G~~Kv~~~~~~l~~i  150 (448)
                      +.+-+.++|++++|+||||||+||++|++|+++|||+|+|||+|.|+.||||||++|+.+|+   |++||++++++|+++
T Consensus       328 lP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~I  407 (664)
T TIGR01381       328 HPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRI  407 (664)
T ss_pred             CChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHH
Confidence            44556699999999999999999999999999999999999999999999999999999999   999999999999999


Q ss_pred             CCCceEEEEeccC-------Cc----------cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          151 FPECHIDAKVLLY-------DA----------SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       151 nP~v~v~~~~~~~-------~~----------~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      ||+++++.+...+       ++          +++.+++.+ +|+|+||+||+++|..++.+|..+++|+|+++ .|..+
T Consensus       408 nP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~-~DvV~d~tDn~esR~L~n~~c~~~~kplI~aA-lGfdg  485 (664)
T TIGR01381       408 FPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKD-HDVVFLLLDSREARWLPTVLCSRHKKIAISAA-LGFDS  485 (664)
T ss_pred             CCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEE-eccce
Confidence            9999999987763       43          356677775 99999999999999999999999999999974 44311


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCC----e----eEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcc
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGG----I----PVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFR  285 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~----i----~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (448)
                         .+.+-                     +|...+    -    ...-....+||.|.....+....   .+. .+ |..
T Consensus       486 ---~lvmr---------------------hG~~~~~~~~~~~~~~~~~~~~~gCYfC~Dv~aP~~s~---~~r-tl-Dqq  536 (664)
T TIGR01381       486 ---YVVMR---------------------HGIGRSESVSDVSSSDSVPYSRLGCYFCNDVTAPGDST---TDR-TL-DQQ  536 (664)
T ss_pred             ---EEEEE---------------------ecccccccccccccccccCCCCCCccccCCCCCCCccc---ccc-cc-ccc
Confidence               11110                     111100    0    00001246788887332221110   000 11 112


Q ss_pred             cccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          286 VRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       286 ~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      |.   |++|..+++|+++|.|+|+.|+..|
T Consensus       537 Ct---VtrPgv~~ias~~AvEll~~llqhp  563 (664)
T TIGR01381       537 CT---VTRPGTAMIASGLAVELLVSVLQHP  563 (664)
T ss_pred             ce---EecchHHHHHHHHHHHHHHHHhcCC
Confidence            32   8999999999999999999999987

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=99.97  E-value=1.9e-31  Score=266.96  Aligned_cols=128  Identities=24%  Similarity=0.412  Sum_probs=118.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      +|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++++++++++||+++|+++...++.
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999888776


Q ss_pred             cc-hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180          166 SS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD  214 (448)
Q Consensus       166 ~~-~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d  214 (448)
                      .. ..+++.+ +|+||+|.||.++|..++++|+.+++|+|+++..|.++.
T Consensus        81 ~~~~~~f~~~-~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~  129 (312)
T cd01489          81 PDFNVEFFKQ-FDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQ  129 (312)
T ss_pred             ccchHHHHhc-CCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeE
Confidence            33 3467765 999999999999999999999999999999987776443

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-31  Score=272.11  Aligned_cols=315  Identities=19%  Similarity=0.246  Sum_probs=221.7

Q ss_pred             HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      +-++.++++||+||||||+||+++++|+++|+++|+|||.|+|++|||||||||+.+|||++|+.++++.++++||.+++
T Consensus         5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l   84 (603)
T KOG2013|consen    5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL   84 (603)
T ss_pred             HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence            44678889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCccc-hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHH
Q 013180          157 DAKVLLYDASS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAV  235 (448)
Q Consensus       157 ~~~~~~~~~~~-~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~  235 (448)
                      .++...+.+.. .-+++. +||+|++|.||.++|.++|+.|.....|+|.+|.                           
T Consensus        85 ~~yhanI~e~~fnv~ff~-qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt---------------------------  136 (603)
T KOG2013|consen   85 VPYHANIKEPKFNVEFFR-QFDIVLNALDNLAARRYVNRMCLAASVPLIESGT---------------------------  136 (603)
T ss_pred             EeccccccCcchHHHHHH-HHHHHHHhhccHHHHHHHHHHHHhhcCCceecCc---------------------------
Confidence            99988876553 344554 5999999999999999999999999999999875                           


Q ss_pred             HHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHH-HHHHHHHcC
Q 013180          236 MHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMAS-HVVTQLAER  314 (448)
Q Consensus       236 r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~-~vi~~l~g~  314 (448)
                             .|+.||+.++..+.+-|+.|.|-+.       |.   .+|.|.+|..|+    .-+...++|. +++..|+|.
T Consensus       137 -------~Gf~GQv~~ii~GkTECyeC~pK~~-------~k---TypvCTIRstPS----~~iHCIVWAK~~lF~qlF~~  195 (603)
T KOG2013|consen  137 -------GGFLGQVQVIIKGKTECYECIPKPV-------PK---TYPVCTIRSTPS----EPIHCIVWAKHYLFNQLFGE  195 (603)
T ss_pred             -------ccccceEEEEecCCcceecccCCCC-------CC---cCCceEeecCCC----CceeeeeehHhHHHHHHhcc
Confidence                   4677899888888888999986432       22   478888887777    5666777777 899999986


Q ss_pred             CCC--CCccccccHHHHHHH----HHH------HhhhHHh----hhCCC---Ccc--ccCHHHHHHH--HHHHhcCCCcC
Q 013180          315 QVQ--TEPIVNMDVDHYRLL----HQR------LTEHEES----LYGTA---KEV--QVDVEEVMYV--AKELWHGRSAW  371 (448)
Q Consensus       315 ~~~--~~~~~~~~~~~y~~~----~~~------l~~~~~~----~~~~~---~~~--~i~~~DV~yL--veEvwrgrS~~  371 (448)
                      .-+  +....+.+.+.-+..    ...      +..+.+.    ..+.+   .++  -+=..||.||  ++++|+-||.=
T Consensus       196 d~~~q~~~~d~~d~d~~e~~t~~~~~~~~et~d~~Er~~~i~~~~~~~~~~~~~i~~klF~~dI~yl~~~e~~wk~r~~p  275 (603)
T KOG2013|consen  196 DDDDQYGRHDNADPDNCEDMTEEEAEAFRETEDLKERRESIVEIDKNLDFGPFKIFNKLFIYDIEYLLGMEALWKPRSRP  275 (603)
T ss_pred             ccccccccccccCchhhhccChhhhhhhccchHHHHHHHHHHHHhhccCCChhhhhhHHHHHHHHHHHhhhhhccCCCCC
Confidence            322  111111121111111    000      1111000    01110   111  1234688888  57999999864


Q ss_pred             CCCc----cccccccccccCceEEeecC-CCCCCCCCcEEEeCHHHHHHHhccC---ch----hhhcchhHHHHHHHHHH
Q 013180          372 EHSA----KDVGRGMWRSVNELMLVRWD-REKPATVSNLVLLKFKEADEHESRT---LD----DIKEKEPAFFERVTSVL  439 (448)
Q Consensus       372 s~~~----~~~~~~~~~~~~~L~l~RWd-~~~p~~~~Nlvllt~~Ea~~He~~~---~~----~~~~~~~~~~~~v~~~~  439 (448)
                      .+..    ..++...-.|.....+.-|. +..=|+++|....-..+-++-.-+.   -+    ..++.++.+.+.|.+-+
T Consensus       276 ~pl~~~~~i~~~~~t~ns~~q~~~~a~~~~~~v~~v~~~~~vf~~~i~~l~~~~~~~~~h~~l~fdKdd~~~~~FVaaaa  355 (603)
T KOG2013|consen  276 VPLSIAEVISTSLETINSIVQSITSAQLNDQNVWTVDEGAVVFRLSIQALDLRCPKESDHWYLIFDKDDASTMEFVAAAA  355 (603)
T ss_pred             CCcchhhccCCccccccchhhhccccccCCcceeeeccccHHHHHHHHHhcccCCccCCCceEEEcCCcHHHHHHHHHHh
Confidence            4421    01111111111223344554 4556888888887777777664322   11    24556778888887654


Q ss_pred             H
Q 013180          440 K  440 (448)
Q Consensus       440 ~  440 (448)
                      -
T Consensus       356 N  356 (603)
T KOG2013|consen  356 N  356 (603)
T ss_pred             h
Confidence            3

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=99.97  E-value=9.4e-31  Score=232.11  Aligned_cols=128  Identities=38%  Similarity=0.551  Sum_probs=118.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      |+++|+|+|+||+||+++++|+++||++|+|+|+|.|+++||+||++++.+|+|++|+++++++|+++||++++++++..
T Consensus         1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ++.++..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|.
T Consensus        81 ~~~~~~~~~~~~-~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~  128 (135)
T PF00899_consen   81 IDEENIEELLKD-YDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGF  128 (135)
T ss_dssp             CSHHHHHHHHHT-SSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETT
T ss_pred             cccccccccccC-CCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence            988888888875 999999999999999999999999999999987654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=99.97  E-value=1e-29  Score=263.60  Aligned_cols=181  Identities=22%  Similarity=0.284  Sum_probs=152.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +|+||||||+||+++++|+++||     |+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||+++|+++.
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            69999999999999999999999     9999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180          161 LLYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM  236 (448)
Q Consensus       161 ~~~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r  236 (448)
                      ..+++++.    .+++.+ +|+||+|.||+++|..+++.|+.+++|+|+++..                           
T Consensus        81 ~~v~~~~~~~~~~~f~~~-~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~---------------------------  132 (435)
T cd01490          81 NRVGPETEHIFNDEFWEK-LDGVANALDNVDARMYVDRRCVYYRKPLLESGTL---------------------------  132 (435)
T ss_pred             cccChhhhhhhhHHHhcC-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc---------------------------
Confidence            88876544    355664 9999999999999999999999999999998864                           


Q ss_pred             HHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          237 HRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       237 ~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                             |..|++.++.+..++|+.|.+.+.   ++       ..|-+.++..|.    ........|.+....+++.+
T Consensus       133 -------G~~G~v~v~iP~~te~y~~~~~p~---~~-------~~P~Ctl~~~P~----~~eHcI~wA~~~F~~lF~~~  190 (435)
T cd01490         133 -------GTKGNTQVVIPHLTESYSSSRDPP---EK-------SIPLCTLKNFPN----AIEHTIQWARDEFEGLFKQP  190 (435)
T ss_pred             -------cceeEEEEEeCCCCCCccCCCCCC---CC-------CCCCccccCCCC----CchHHHHHHHHHHHHHhccc
Confidence                   445677777777788888863221   11       244455555555    44556667888888888765

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=99.96  E-value=7.4e-30  Score=265.37  Aligned_cols=147  Identities=16%  Similarity=0.214  Sum_probs=136.3

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK  144 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~  144 (448)
                      ++|+||+++||.+||++|++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++|+++++
T Consensus         1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~   80 (425)
T cd01493           1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC   80 (425)
T ss_pred             CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCceEEEEeccCCc--cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013180          145 KHFSSIFPECHIDAKVLLYDA--SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR  212 (448)
Q Consensus       145 ~~l~~inP~v~v~~~~~~~~~--~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k  212 (448)
                      ++|+++||+++++.+.+..+.  ++..+++.+ +|+||+|.++......|+++|+++++|+|.+...|..
T Consensus        81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~-fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~  149 (425)
T cd01493          81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQ-FTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLY  149 (425)
T ss_pred             HHHHHHCCCCEEEEEecccchhhhhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCE
Confidence            999999999999998876542  234566765 9999999999999999999999999999999888763

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=99.96  E-value=8.3e-29  Score=221.48  Aligned_cols=127  Identities=39%  Similarity=0.633  Sum_probs=119.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      +|+|+||||+||+++++|+++|+++|+|+|+|.|+++||+||++++.+|+|++|+++++++++++||+++++.+...++.
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      ++..+++.+ +|+||+|+|+.+.+..++++|+++++|+|+++..|..+
T Consensus        81 ~~~~~~~~~-~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g  127 (143)
T cd01483          81 DNLDDFLDG-VDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGG  127 (143)
T ss_pred             hhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence            666677765 99999999999999999999999999999999876543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=99.96  E-value=3e-28  Score=240.64  Aligned_cols=120  Identities=27%  Similarity=0.341  Sum_probs=112.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCc--cCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD--VGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d--vG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||+|+||||+||++|++|+++|||+|+|+|+|.|+.+||+||++|+.+|  +|++|+++++++|+++||+++++.+...+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            6999999999999999999999999999999999999999999999999  99999999999999999999999887543


Q ss_pred             -----------------CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 -----------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 -----------------~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                                       +.+++.+++.+ +|+||||+||+++|..++.+|.++++|+|++
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~-~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a  139 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKD-HDVIFLLTDSRESRWLPTLLSAAKNKLVINA  139 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhh-CCEEEECCCCHHHHHHHHHHHHHhCCcEEEE
Confidence                             33456777876 9999999999999999999999999999985

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=99.96  E-value=6.3e-29  Score=280.57  Aligned_cols=144  Identities=22%  Similarity=0.328  Sum_probs=135.7

Q ss_pred             HHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180           63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC  142 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~  142 (448)
                      ..++|+||+++||.++|+||++++|+|+||||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++
T Consensus         3 d~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea   82 (1008)
T TIGR01408         3 DEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEA   82 (1008)
T ss_pred             hHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHH
Confidence            34799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC--CcEEEEcCCCC
Q 013180          143 LKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLCATGAGA  211 (448)
Q Consensus       143 ~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~--ip~I~~~g~G~  211 (448)
                      ++++|+++||+++|+++...+++    +++.+ +|+||+|.++++.+..+|++|++++  +|+|+++..|.
T Consensus        83 ~~~~L~eLNp~V~V~~~~~~l~~----e~l~~-fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~  148 (1008)
T TIGR01408        83 VVKKLAELNPYVHVSSSSVPFNE----EFLDK-FQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGL  148 (1008)
T ss_pred             HHHHHHHHCCCceEEEecccCCH----HHHcC-CCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecce
Confidence            99999999999999999876653    46665 9999999999999999999999999  99999887665

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.7e-29  Score=242.54  Aligned_cols=152  Identities=21%  Similarity=0.349  Sum_probs=140.0

Q ss_pred             ccchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180           56 DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      .+.++|.  ..|+|||++||.++|++|+++||+|+|.+|+|++++++|+.+|||+++++|+-.|+..+++-|||+..+++
T Consensus         5 else~E~--alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~v   82 (331)
T KOG2014|consen    5 ELSEQEI--ALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSV   82 (331)
T ss_pred             hhhHHHH--HHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhh
Confidence            4556666  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      |+.|+++..++++++||.++|....+.+.+.+ ++++.. ||+||-.--+.+.+..+|..|++++++|+.+...|.
T Consensus        83 g~~raeas~erl~~LNPmV~v~~d~edl~ek~-eeff~q-FdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~  156 (331)
T KOG2014|consen   83 GQTRAEASLERLQDLNPMVDVSVDKEDLSEKD-EEFFTQ-FDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGL  156 (331)
T ss_pred             chHHHHHHHHHHHhcCCceEEEechhhhhhcc-hhhhhc-eeEEEEeccchhhhhhHHHHHHhcCceEEeccccce
Confidence            99999999999999999999998877766544 566764 999998888999999999999999999999876664

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=99.95  E-value=2.9e-27  Score=229.13  Aligned_cols=136  Identities=30%  Similarity=0.382  Sum_probs=119.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCC-----c-----eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGV-----G-----RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGV-----g-----~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      -+.++|+||||||+||+++++|+|+|+     |     +|+|+|+|.|++||||||. |..+|||++|++++++++..++
T Consensus         9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQl-f~~~dVG~~Ka~v~~~ri~~~~   87 (244)
T TIGR03736         9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQA-FYPADVGQNKAIVLVNRLNQAM   87 (244)
T ss_pred             hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhccc-CChhHCCcHHHHHHHHHHHhcc
Confidence            378999999999999999999999973     4     9999999999999999995 6779999999999999999998


Q ss_pred             CCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--c-CCcEEEEcCCCCccCCCceEEcccccc
Q 013180          152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--R-GLKVLCATGAGARADPTRIRVADLRES  226 (448)
Q Consensus       152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~-~ip~I~~~g~G~k~dpt~i~i~di~~~  226 (448)
                       .++|+++...++++   +++. ++|+||||+||+++|..|++.|.+  . ++|++.+   |.+.+|+++.++++..+
T Consensus        88 -~~~i~a~~~~~~~~---~~~~-~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~---Gn~~~~gqv~~g~i~~~  157 (244)
T TIGR03736        88 -GTDWTAHPERVERS---STLH-RPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDL---GNRADDGQVILGQVPSR  157 (244)
T ss_pred             -CceEEEEEeeeCch---hhhc-CCCEEEECCCCHHHHHHHHHHHHHhcccccceecc---cCCCCCCcEEEEecccc
Confidence             89999999888763   2344 499999999999999999999988  2 4777765   45889999999999654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK06153 hypothetical protein; Provisional

Probab=99.94  E-value=6.3e-27  Score=237.82  Aligned_cols=127  Identities=22%  Similarity=0.322  Sum_probs=117.4

Q ss_pred             HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc-cccCCccCc--hHHHHHHHHHhhhCCC
Q 013180           77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA-VATRADVGT--PKALCLKKHFSSIFPE  153 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~-l~~~~dvG~--~Kv~~~~~~l~~inP~  153 (448)
                      +.|++|++++|+||||||+||+++.+|+|+||++|+|||+|.|+.||||||. +++.+|+|+  +||+++++++.++|| 
T Consensus       169 ~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-  247 (393)
T PRK06153        169 ALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-  247 (393)
T ss_pred             HHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-
Confidence            5699999999999999999999999999999999999999999999999998 568899999  999999999999998 


Q ss_pred             ceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                       +|.++...+++++... +.+ +|+||+|+|+.++|..|+++|.++++|+|+++
T Consensus       248 -~I~~~~~~I~~~n~~~-L~~-~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G  298 (393)
T PRK06153        248 -GIVPHPEYIDEDNVDE-LDG-FTFVFVCVDKGSSRKLIVDYLEALGIPFIDVG  298 (393)
T ss_pred             -eEEEEeecCCHHHHHH-hcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEee
Confidence             5677778888877664 454 99999999999999999999999999999965

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=99.94  E-value=6.2e-27  Score=224.19  Aligned_cols=115  Identities=18%  Similarity=0.267  Sum_probs=107.1

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK  144 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~  144 (448)
                      ++|+||+++||.++|+||++++|+|+|+||+|+++++||+++|||+|+|+|+|.|+.+||+||++++. |+|++|+++++
T Consensus         7 ~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAeaAa   85 (287)
T PTZ00245          7 VRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGARAL   85 (287)
T ss_pred             HHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999987 78999999999


Q ss_pred             HHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHH
Q 013180          145 KHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       145 ~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                      ++++++||.++|+++...++.++       ++++||-|.-+.+
T Consensus        86 ~~L~eLNP~V~V~~i~~rld~~n-------~fqvvV~~~~~le  121 (287)
T PTZ00245         86 GALQRLNPHVSVYDAVTKLDGSS-------GTRVTMAAVITEE  121 (287)
T ss_pred             HHHHHHCCCcEEEEcccccCCcC-------CceEEEEEcccHH
Confidence            99999999999999988887654       4888887665544

>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2e-26  Score=224.88  Aligned_cols=152  Identities=21%  Similarity=0.358  Sum_probs=129.8

Q ss_pred             CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           75 GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        75 G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      ++|..+-|.+.+|+|+|+||+||++.++|+.+|++.+.+||.|+++.+||||||+|+++|||+||++++++.+.+..|.+
T Consensus        31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~  110 (422)
T KOG2015|consen   31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC  110 (422)
T ss_pred             CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence            57788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH---cC-------CcEEEEcCCCCccCCCceEEcccc
Q 013180          155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR---RG-------LKVLCATGAGARADPTRIRVADLR  224 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~---~~-------ip~I~~~g~G~k~dpt~i~i~di~  224 (448)
                      .|..+..++..-. .++.. +||+||.+.|++..|.+||....+   .|       +|+|++|..|.|++. |+.++-+.
T Consensus       111 ~v~~h~~kIqd~~-~~FYk-~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~a-rvI~Pg~T  187 (422)
T KOG2015|consen  111 VVVPHRQKIQDKP-ISFYK-RFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHA-RVIYPGIT  187 (422)
T ss_pred             EEeeeecchhcCC-HHHHh-hhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCccccccee-EEEecCcc
Confidence            9999888776543 34555 499999999999999999976543   23       799999988777753 34444444


Q ss_pred             cccCC
Q 013180          225 ESTND  229 (448)
Q Consensus       225 ~~~~d  229 (448)
                      .+.+|
T Consensus       188 aCieC  192 (422)
T KOG2015|consen  188 ACIEC  192 (422)
T ss_pred             HHHHh
Confidence            44444

>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]

Probab=99.94  E-value=6.2e-26  Score=217.79  Aligned_cols=220  Identities=23%  Similarity=0.351  Sum_probs=175.1

Q ss_pred             cchhHHHHHHhhhhHhh--cC-HHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           57 LLKDEVVAEQLTRNIQF--FG-VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        57 ~~~~e~~~e~~~Rq~~~--~G-~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      +..+=.-.+-|+|-+.+  +| .+..+|++...|.|||.|||||-+|++|.|+|+|++.|+|.|.|++.|+||-| |++.
T Consensus        52 lSsEVVDSNPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLF-f~P~  130 (422)
T KOG2336|consen   52 LSSEVVDSNPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPD  130 (422)
T ss_pred             hhhhHhcCChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccc-cCcc
Confidence            33333344678887765  44 36689999999999999999999999999999999999999999999999986 5889


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCC-ccchHHHhc---------C-CCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYD-ASSEEEILS---------G-HPDFVLDCIDNIDTKVALLAACVRRGLK  202 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~-~~~~~~ll~---------~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip  202 (448)
                      ..|.+|++++.+.|..+||++.++.++..++ -++++.|..         + ..|+|+.|.||+++|..+|.+|.+.+..
T Consensus       131 QaGlsKv~AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~  210 (422)
T KOG2336|consen  131 QAGLSKVDAAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQT  210 (422)
T ss_pred             cccchHHHHHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhH
Confidence            9999999999999999999999999988764 467766642         2 4899999999999999999999999998


Q ss_pred             EEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCC-CCCCCCCCCCCCCcc
Q 013180          203 VLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFT-GPSGEDENPSDYQMV  281 (448)
Q Consensus       203 ~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~-~~~~~~~~~~~~~~~  281 (448)
                      ++.++-.                                ...+.|+|..+.++++.|+.|.|-- -..+-++...     
T Consensus       211 WmESGVS--------------------------------EnAVSGHIQ~i~PGetACFACaPPlVVAs~IDErTL-----  253 (422)
T KOG2336|consen  211 WMESGVS--------------------------------ENAVSGHIQLIVPGETACFACAPPLVVASGIDERTL-----  253 (422)
T ss_pred             HHHccCc--------------------------------cccccceeEEecCCccceecccCceeeecCcchhhh-----
Confidence            8876643                                1456789999999999999998521 1111110000     


Q ss_pred             CCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          282 PGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       282 ~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ..-. -...+|.++-+++.+++.+..||+|+..+
T Consensus       254 KReG-VCAASLPTTMgvvAG~LVqN~LK~LLNFG  286 (422)
T KOG2336|consen  254 KREG-VCAASLPTTMGVVAGFLVQNSLKFLLNFG  286 (422)
T ss_pred             hhcc-eeeecCcchHHHHHHHHHHHHHHHHhhcc
Confidence            0000 02356778899999999999999998754

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=2e-25  Score=238.33  Aligned_cols=161  Identities=25%  Similarity=0.383  Sum_probs=149.7

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPK  139 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K  139 (448)
                      .||+-|++.||..-|+||.+.++.+||+|.+||+.++|++..||     |+|++.|+|.+|.|||||||||+..|||++|
T Consensus       411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~K  490 (1013)
T KOG2012|consen  411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPK  490 (1013)
T ss_pred             CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchH
Confidence            59999999999999999999999999999999999999999999     4799999999999999999999999999999


Q ss_pred             HHHHHHHHhhhCCCceEEEEeccCCccc----hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCC
Q 013180          140 ALCLKKHFSSIFPECHIDAKVLLYDASS----EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADP  215 (448)
Q Consensus       140 v~~~~~~l~~inP~v~v~~~~~~~~~~~----~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dp  215 (448)
                      ++++++....+||.++|+++..++.++.    .++++. +.|+|..|.||.++|.++.+-|.-+.+|++.+|..|+|++ 
T Consensus       491 Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~-~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGn-  568 (1013)
T KOG2012|consen  491 SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFE-NLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGN-  568 (1013)
T ss_pred             HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHh-hhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCccc-
Confidence            9999999999999999999999887665    244555 5999999999999999999999999999999999999986 


Q ss_pred             CceEEccccccc
Q 013180          216 TRIRVADLREST  227 (448)
Q Consensus       216 t~i~i~di~~~~  227 (448)
                      |++.|+.+++++
T Consensus       569 tQVvvPhlTEsY  580 (1013)
T KOG2012|consen  569 TQVVVPHLTESY  580 (1013)
T ss_pred             eeEEeccccccc
Confidence            677788888765

>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=4e-22  Score=213.32  Aligned_cols=152  Identities=21%  Similarity=0.300  Sum_probs=140.2

Q ss_pred             ccchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180           56 DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      ...+.++-+..|+||++.+|.++|+||..++|+|.|+||+|.+||+||+.+||+++||.|...+.+++|.-|++++++||
T Consensus         9 ~~a~~~IDE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di   88 (1013)
T KOG2012|consen    9 NSASQEIDESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI   88 (1013)
T ss_pred             CcchhhhhhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc
Confidence            34456666688999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR  212 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k  212 (448)
                      |++++++..++|.++|+.|.|.+++..++    .+++.+ |++||-+-.+......|+++||+++|.+|.+...|..
T Consensus        89 gknRA~as~~~LaeLN~yV~V~v~t~~~~----~e~L~~-FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLf  160 (1013)
T KOG2012|consen   89 GKNRAEASVEKLAELNNYVPVVVLTGPLT----EEFLSD-FQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLF  160 (1013)
T ss_pred             CCchHHHHHHHHHHhhcceeeEEecCccc----HHHHhC-CcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhh
Confidence            99999999999999999999999877665    467775 9999999999999999999999999999998877653

>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=3e-19  Score=180.85  Aligned_cols=146  Identities=17%  Similarity=0.208  Sum_probs=129.4

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK  144 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~  144 (448)
                      .+|+||+++||++||..|..++|+++|||.+||+++++|+..|||.|+++|...|+.+++..+|+...+++|++||++..
T Consensus         8 ~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA~a~~   87 (523)
T KOG2016|consen    8 TKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRAEATL   87 (523)
T ss_pred             hHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCceEEEEeccC--CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          145 KHFSSIFPECHIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       145 ~~l~~inP~v~v~~~~~~~--~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +.++++||.+.-....+.-  ...+..+++. ++++||.+--+-++-..+.++|+.+++|++.+-..|.
T Consensus        88 e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~-qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl  155 (523)
T KOG2016|consen   88 EFLQELNPSVSGSFVEESPDFLIDNDPSFFS-QFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGL  155 (523)
T ss_pred             HHHHHhChhhhcCccccChhhhhhcCchhhh-eeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecc
Confidence            9999999998876554421  1222334555 4999998888888899999999999999999765553

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=99.76  E-value=9.9e-18  Score=178.07  Aligned_cols=204  Identities=17%  Similarity=0.224  Sum_probs=148.9

Q ss_pred             HHHhhhhHhhc------CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180           64 AEQLTRNIQFF------GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT  137 (448)
Q Consensus        64 ~e~~~Rq~~~~------G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~  137 (448)
                      .|||+.||.||      |.+..++.++++|+|+|.||+|++++..|+++|+++|+.+|+|.+ .+|+||        ||+
T Consensus       103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgE  173 (637)
T TIGR03693       103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHE  173 (637)
T ss_pred             HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHH
Confidence            39999999986      457778889999999999999999999999999999999999999 999999        777


Q ss_pred             hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcC---CcEEEEcCCCCc
Q 013180          138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG---LKVLCATGAGAR  212 (448)
Q Consensus       138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~---ip~I~~~g~G~k  212 (448)
                      . ++.+++    .||.++|+.++. -..+...+.+.+ +|+||..+|++  ..-.++|+.|.+.|   +|++.++.    
T Consensus       174 l-~e~A~~----~n~~v~v~~i~~-~~~~dl~ev~~~-~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~----  242 (637)
T TIGR03693       174 L-AEIAEE----TDDALLVQEIDF-AEDQHLHEAFEP-ADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ----  242 (637)
T ss_pred             H-HHHHHH----hCCCCceEeccC-CcchhHHHhhcC-CcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc----
Confidence            7 666665    999999998875 334556677775 99999999954  45678999999999   55555432    


Q ss_pred             cCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC--CCCCCCCCCCCCCCCCccCCcccccCC
Q 013180          213 ADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL--PFTGPSGEDENPSDYQMVPGFRVRIIP  290 (448)
Q Consensus       213 ~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p  290 (448)
                                                    .++.|  |++-+..++|..|+  -+.........       +     ..+
T Consensus       243 ------------------------------~~liG--PlftPgkTGCWeCa~~RL~e~~L~~~~-------~-----s~a  278 (637)
T TIGR03693       243 ------------------------------VGLAG--PVFQQHGDECFEAAWHRLHESALHEEN-------S-----LAA  278 (637)
T ss_pred             ------------------------------ceeec--ceECCCCCcHHHHHHHHHHHHhcCCCC-------c-----ccc
Confidence                                          33445  66666778898883  11111000000       1     122


Q ss_pred             cccchHHHHHHHHHHHHHHHHHcCC-CC-CCccccccHHHHHH
Q 013180          291 VLGSIPAIFGMVMASHVVTQLAERQ-VQ-TEPIVNMDVDHYRL  331 (448)
Q Consensus       291 vlg~~~~i~G~~~A~~vi~~l~g~~-~~-~~~~~~~~~~~y~~  331 (448)
                      +..+..++++.+++.|++|++++.. .. ...+...|....+.
T Consensus       279 ~sPat~AmlAnviv~ElfK~ITg~~~~es~gqlv~lDleTLE~  321 (637)
T TIGR03693       279 FPLAGKAMLANIIVFELFKAAADDEHLEKKNQFFLLDLATLEG  321 (637)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhccCccccCCcEEEEEcccccc
Confidence            2223478999999999999999742 22 23444445544444

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]

Probab=99.52  E-value=8.7e-14  Score=143.69  Aligned_cols=132  Identities=24%  Similarity=0.298  Sum_probs=113.7

Q ss_pred             CHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc---CchHHHHHHHHHhhhC
Q 013180           75 GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV---GTPKALCLKKHFSSIF  151 (448)
Q Consensus        75 G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv---G~~Kv~~~~~~l~~in  151 (448)
                      -.-..+++.+.|+++.|+|.+||.||.+|..-||.|||++|..+|+.||=.||.+|+-+|-   |++||++++++|++|+
T Consensus       331 PdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~If  410 (669)
T KOG2337|consen  331 PDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIF  410 (669)
T ss_pred             CccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhC
Confidence            3446789999999999999999999999999999999999999999999999999999986   4999999999999999


Q ss_pred             CCceEEEEeccC-------Ccc----------chHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          152 PECHIDAKVLLY-------DAS----------SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       152 P~v~v~~~~~~~-------~~~----------~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      |.++-..+...+       .++          .+++++.. .|+|+-.+|+.++|..=.-.|...++-+|+++
T Consensus       411 P~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~-HDviFLLtDsRESRWLPtll~a~~~KivINaA  482 (669)
T KOG2337|consen  411 PSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKD-HDVIFLLTDSRESRWLPTLLAAAKNKIVINAA  482 (669)
T ss_pred             ccccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhh-cceEEEEeccchhhhhHHHHHhhhcceEeeee
Confidence            999877654332       222          23345565 99999999999999887788888888888865

>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]

Probab=98.69  E-value=1.2e-07  Score=85.76  Aligned_cols=142  Identities=24%  Similarity=0.326  Sum_probs=113.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHH---HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .-.|.++|||-+|--++..|.   |-|..+|.++|...|++.++---.+  -..+|.+|++.++ ++....+.-+|++++
T Consensus        18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiihrr~--Ga~~GEyKv~Fi~-rl~~~~f~r~V~a~p   94 (217)
T COG4015          18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIHRRL--GAKVGEYKVDFIK-RLGRVHFGRRVEAFP   94 (217)
T ss_pred             CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHHHHh--CCCcchhHHHHHH-HhCcCCCCceeeccc
Confidence            456999999999999999998   7899999999999999999754322  4689999999875 566777888999999


Q ss_pred             ccCCccchHHHhcCCCCeEEEcc---CCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCI---DNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSR  233 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~---Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~  233 (448)
                      +.++.+|+..+.   -|+|+-|+   |...+-..|.++|++.|+.-|+.+|.-+-+ ...+++.|+.+... |...
T Consensus        95 E~it~dNlhll~---gDVvvi~IAGGdT~PvTaaii~ya~~rG~~TisT~GVFGig-eEev~v~~~eeA~g-P~~~  165 (217)
T COG4015          95 ENITKDNLHLLK---GDVVVICIAGGDTIPVTAAIINYAKERGIKTISTNGVFGIG-EEEVKVCDAEEAKG-PAKF  165 (217)
T ss_pred             ccccccchhhhc---CCEEEEEecCCCcchhHHHHHHHHHHcCceEeecCceeecc-hhheEEeehhhcCc-cHHH
Confidence            999999987664   38887776   577788899999999999999988763321 34566666666544 4433

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=98.23  E-value=1.2e-05  Score=76.49  Aligned_cols=93  Identities=15%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|...++.|...| .++++|+.+.      ..                   .+.++.+.-.+....
T Consensus         7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~------~~-------------------~l~~l~~~~~i~~~~   60 (202)
T PRK06718          7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPEL------TE-------------------NLVKLVEEGKIRWKQ   60 (202)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCC------CH-------------------HHHHHHhCCCEEEEe
Confidence            478999999999999999999999999 6899987541      11                   111111111233333


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      ..+..    ..+. .+|+||.||++.+....+.+.| +.++++-.
T Consensus        61 ~~~~~----~~l~-~adlViaaT~d~elN~~i~~~a-~~~~lvn~   99 (202)
T PRK06718         61 KEFEP----SDIV-DAFLVIAATNDPRVNEQVKEDL-PENALFNV   99 (202)
T ss_pred             cCCCh----hhcC-CceEEEEcCCCHHHHHHHHHHH-HhCCcEEE
Confidence            33332    2234 3999999999999999999999 45675533

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=98.18  E-value=2.9e-05  Score=70.93  Aligned_cols=125  Identities=14%  Similarity=0.200  Sum_probs=83.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|...++.|...|. ++++|+++..+.  +                       .++ +.  +....
T Consensus        10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~~--l-----------------------~~l-~~--i~~~~   60 (157)
T PRK06719         10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICKE--M-----------------------KEL-PY--ITWKQ   60 (157)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCHH--H-----------------------Hhc-cC--cEEEe
Confidence            5789999999999999999999999995 699987663211  0                       111 11  22223


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC---CCccCCCceEEccccc-----ccCChhh
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA---GARADPTRIRVADLRE-----STNDPLS  232 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~---G~k~dpt~i~i~di~~-----~~~dpl~  232 (448)
                      ..+.++.    +. ++|+||.|+|+.+....+...|+++ .++ +....   +...-|..++-+|+.-     ....-++
T Consensus        61 ~~~~~~d----l~-~a~lViaaT~d~e~N~~i~~~a~~~-~~v-n~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la  133 (157)
T PRK06719         61 KTFSNDD----IK-DAHLIYAATNQHAVNMMVKQAAHDF-QWV-NVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFT  133 (157)
T ss_pred             cccChhc----CC-CceEEEECCCCHHHHHHHHHHHHHC-CcE-EECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHH
Confidence            3344332    33 3999999999999999999999875 444 33222   2234477666666633     3355677


Q ss_pred             HHHHHHHhh
Q 013180          233 RAVMHRLRK  241 (448)
Q Consensus       233 ~~~r~~l~~  241 (448)
                      +.+|+++..
T Consensus       134 ~~lr~~ie~  142 (157)
T PRK06719        134 KRLKQELTS  142 (157)
T ss_pred             HHHHHHHHH
Confidence            788888766

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=98.16  E-value=2.4e-05  Score=74.55  Aligned_cols=129  Identities=22%  Similarity=0.289  Sum_probs=83.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      |++++|+|||.|.+|..-+..|...|. ++++|+++.-                  +.   +.+ +.+.   -+++.+..
T Consensus         7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~------------------~~---l~~-l~~~---~~i~~~~~   60 (205)
T TIGR01470         7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE------------------SE---LTL-LAEQ---GGITWLAR   60 (205)
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC------------------HH---HHH-HHHc---CCEEEEeC
Confidence            788999999999999999999999995 7999987621                  00   111 1111   13444444


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc--CCCCccCCCceEEccccc-----ccCChhhHH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT--GAGARADPTRIRVADLRE-----STNDPLSRA  234 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~--g~G~k~dpt~i~i~di~~-----~~~dpl~~~  234 (448)
                      .+..    ..+.+ +|+||-|+|+.+....+...|++.++|+-.+.  ..+...-|..++-+++.-     ....-+++.
T Consensus        61 ~~~~----~dl~~-~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~  135 (205)
T TIGR01470        61 CFDA----DILEG-AFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARL  135 (205)
T ss_pred             CCCH----HHhCC-cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHH
Confidence            4442    33454 99999999999999999999999999984432  223333355444444322     223344445


Q ss_pred             HHHHHhh
Q 013180          235 VMHRLRK  241 (448)
Q Consensus       235 ~r~~l~~  241 (448)
                      +|.++.+
T Consensus       136 lr~~ie~  142 (205)
T TIGR01470       136 LRERIET  142 (205)
T ss_pred             HHHHHHH
Confidence            5555544

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.05  E-value=1.9e-05  Score=78.96  Aligned_cols=77  Identities=31%  Similarity=0.431  Sum_probs=60.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++.++|+|+|+||+|..++..|+..|+++|+|+|.+                   ..|++.+++.+.+.+|.+.+...  
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~--  183 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAG--  183 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEec--
Confidence            567899999999999999999999999999998765                   26899999999887776554332  


Q ss_pred             cCCccchHHHhcCCCCeEEEccC
Q 013180          162 LYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                          ++..+.+. ++|+||+||-
T Consensus       184 ----~~~~~~~~-~aDiVInaTp  201 (284)
T PRK12549        184 ----SDLAAALA-AADGLVHATP  201 (284)
T ss_pred             ----cchHhhhC-CCCEEEECCc
Confidence                12233344 3999999874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.98  E-value=4.7e-05  Score=78.95  Aligned_cols=97  Identities=23%  Similarity=0.362  Sum_probs=68.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      .+|+|+|||+||+.+|.+|++.|.++|++.|...                   .|...+....   -+  ++++..-.. 
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-------------------~~~~~i~~~~---~~--~v~~~~vD~~   57 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-------------------EKCARIAELI---GG--KVEALQVDAA   57 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHHHhhc---cc--cceeEEeccc
Confidence            5899999999999999999999999999976431                   1111111111   11  454444333 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      +.+.+.+++.+ +|+||+|...+-.. .+.++|-+.|+++++.+
T Consensus        58 d~~al~~li~~-~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts   99 (389)
T COG1748          58 DVDALVALIKD-FDLVINAAPPFVDL-TILKACIKTGVDYVDTS   99 (389)
T ss_pred             ChHHHHHHHhc-CCEEEEeCCchhhH-HHHHHHHHhCCCEEEcc
Confidence            33456677876 89999999876655 77789999999999865

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.94  E-value=4e-05  Score=68.06  Aligned_cols=80  Identities=31%  Similarity=0.421  Sum_probs=58.8

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..+++++|+|+|+||.|..++.+|+..|+++|+|+          ||..         .|++.+++.+    +...+...
T Consensus         8 ~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~----------nRt~---------~ra~~l~~~~----~~~~~~~~   64 (135)
T PF01488_consen    8 GDLKGKRVLVIGAGGAARAVAAALAALGAKEITIV----------NRTP---------ERAEALAEEF----GGVNIEAI   64 (135)
T ss_dssp             STGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEE----------ESSH---------HHHHHHHHHH----TGCSEEEE
T ss_pred             CCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEE----------ECCH---------HHHHHHHHHc----Ccccccee
Confidence            36899999999999999999999999999999994          5653         4777777776    44445443


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                      .-    +...+.+.. +|+||.|+....
T Consensus        65 ~~----~~~~~~~~~-~DivI~aT~~~~   87 (135)
T PF01488_consen   65 PL----EDLEEALQE-ADIVINATPSGM   87 (135)
T ss_dssp             EG----GGHCHHHHT-ESEEEE-SSTTS
T ss_pred             eH----HHHHHHHhh-CCeEEEecCCCC
Confidence            32    223345554 999999988643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain

Probab=97.89  E-value=1.3e-05  Score=75.76  Aligned_cols=38  Identities=21%  Similarity=0.260  Sum_probs=34.4

Q ss_pred             CHHHHHHhhCCcEEEEcCChHHHH-HHHHHHHcCCceEE
Q 013180           75 GVESQQKVSGSYVVVIGLGGVGSH-AAAMLLRSGVGRLL  112 (448)
Q Consensus        75 G~~~q~kL~~~~VlVVG~GGvGs~-va~~LarsGVg~i~  112 (448)
                      +.+.++++++++|.|+|.|+.|+. ++..|+.+||+.+.
T Consensus        96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~  134 (193)
T TIGR03882        96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP  134 (193)
T ss_pred             HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC
Confidence            456789999999999999999999 99999999999764

This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.

>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein

Probab=97.74  E-value=1.2e-05  Score=65.70  Aligned_cols=48  Identities=23%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          256 EKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       256 e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ++||++|+ +++.+  +.       .  ..+...|||||+++++|+++|+|+||+|+|..
T Consensus         2 ~~pC~rCl-~p~~~--~~-------~--~~C~~~GVlg~~~giigslqA~eaik~l~g~~   49 (84)
T PF05237_consen    2 KTPCYRCL-FPEPP--ES-------A--PTCAEAGVLGPVVGIIGSLQANEAIKLLLGIG   49 (84)
T ss_dssp             T---HHHH-HTTSS-----------T--TSSSTS-B-HHHHHHHHHHHHHHHHHHHCT-S
T ss_pred             CCceehhc-CCCCC--cc-------C--CCccccccccchHHHHHHHHHHHHHHHHHhcC
Confidence            57899988 44321  11       1  12456799999999999999999999999863

The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=97.70  E-value=0.00038  Score=67.15  Aligned_cols=130  Identities=12%  Similarity=0.120  Sum_probs=83.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++++.+|+|||.|.++..=+..|..+| .+|++|-++.-.                  ....    +. .++.  |+.+.
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~~------------------el~~----l~-~~~~--i~~~~   75 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFSK------------------EFLD----LK-KYGN--LKLIK   75 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCCH------------------HHHH----HH-hCCC--EEEEe
Confidence            567899999999999999999999999 569998776210                  0000    10 1222  44444


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC--CCccCCCceEEcccc-----cccCChhhH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA--GARADPTRIRVADLR-----ESTNDPLSR  233 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~--G~k~dpt~i~i~di~-----~~~~dpl~~  233 (448)
                      ..+.++    .+.+ +++||.|||+.+.-..+.+.|++.++++..+.--  +...-|..++-+++.     .....-+++
T Consensus        76 r~~~~~----dl~g-~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar  150 (223)
T PRK05562         76 GNYDKE----FIKD-KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSV  150 (223)
T ss_pred             CCCChH----HhCC-CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHH
Confidence            555443    3444 9999999999999999999999999988775421  112224433333322     222334555


Q ss_pred             HHHHHHhh
Q 013180          234 AVMHRLRK  241 (448)
Q Consensus       234 ~~r~~l~~  241 (448)
                      .+|.+|.+
T Consensus       151 ~lR~~ie~  158 (223)
T PRK05562        151 FIGEKVKN  158 (223)
T ss_pred             HHHHHHHH
Confidence            56655554

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.70  E-value=9.4e-05  Score=62.61  Aligned_cols=88  Identities=25%  Similarity=0.393  Sum_probs=63.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|..-+..|..+| .+++++..+. +...                            ..+++  ..
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~~----------------------------~~i~~--~~   51 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFSE----------------------------GLIQL--IR   51 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHHH----------------------------TSCEE--EE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhhh----------------------------hHHHH--Hh
Confidence            478999999999999999999999999 7899998885 1000                            11222  22


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ..+.     +.+.+ +|+|+.|+++......+.+.|+++++|+-.+
T Consensus        52 ~~~~-----~~l~~-~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   52 REFE-----EDLDG-ADLVFAATDDPELNEAIYADARARGILVNVV   91 (103)
T ss_dssp             SS-G-----GGCTT-ESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred             hhHH-----HHHhh-heEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence            2231     22444 9999999999999999999999999988764

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=97.42  E-value=0.00071  Score=70.10  Aligned_cols=95  Identities=27%  Similarity=0.406  Sum_probs=64.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-C
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-D  164 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~  164 (448)
                      |+|+|+|.+|+.++..|++.+-- ++++.|.+.                   .|++.+.+.+    ...++....... +
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~----~~~~~~~~~~d~~~   57 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL----LGDRVEAVQVDVND   57 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT------TTTTEEEEE--TTT
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc----cccceeEEEEecCC
Confidence            79999999999999999999854 899977652                   2333333332    223444444333 3


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .+.+.+++.+ +|+||+|...+ ....+.+.|.+.|+++|+.
T Consensus        58 ~~~l~~~~~~-~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   58 PESLAELLRG-CDVVINCAGPF-FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             HHHHHHHHTT-SSEEEE-SSGG-GHHHHHHHHHHHT-EEEES
T ss_pred             HHHHHHHHhc-CCEEEECCccc-hhHHHHHHHHHhCCCeecc
Confidence            4446777776 99999999887 6678899999999999994

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.38  E-value=0.00065  Score=67.93  Aligned_cols=79  Identities=27%  Similarity=0.384  Sum_probs=55.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.|..++..|+..|+.+|+|+|.+          .         .|++.+++++....+...+...  
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~----------~---------~ka~~La~~~~~~~~~~~~~~~--  183 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD----------T---------SRAQALADVINNAVGREAVVGV--  183 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC----------H---------HHHHHHHHHHhhccCcceEEec--
Confidence            457899999999999999999999999999997543          1         3888888877654443223221  


Q ss_pred             cCCccchHHHhcCCCCeEEEccC
Q 013180          162 LYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                        +..+..+.+. ++|+||+|+-
T Consensus       184 --~~~~~~~~~~-~~divINaTp  203 (283)
T PRK14027        184 --DARGIEDVIA-AADGVVNATP  203 (283)
T ss_pred             --CHhHHHHHHh-hcCEEEEcCC
Confidence              1111222334 4899999874

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=97.38  E-value=0.00066  Score=65.01  Aligned_cols=96  Identities=23%  Similarity=0.270  Sum_probs=67.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|.+++|+|||.|.+|..=++.|..+| .+++++-++. +                 +....    +.+.++   +.-+.
T Consensus         9 ~l~~k~VlvvGgG~va~rKa~~ll~~g-a~v~Vvs~~~-~-----------------~el~~----~~~~~~---i~~~~   62 (210)
T COG1648           9 DLEGKKVLVVGGGSVALRKARLLLKAG-ADVTVVSPEF-E-----------------PELKA----LIEEGK---IKWIE   62 (210)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhcC-CEEEEEcCCc-c-----------------HHHHH----HHHhcC---cchhh
Confidence            478899999999999999999999999 5688866554 1                 11111    111111   22222


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      ..+..    +.+.+ +++||-||||.+....+.+.|.++++|+-.+.
T Consensus        63 ~~~~~----~~~~~-~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          63 REFDA----EDLDD-AFLVIAATDDEELNERIAKAARERRILVNVVD  104 (210)
T ss_pred             cccCh----hhhcC-ceEEEEeCCCHHHHHHHHHHHHHhCCceeccC
Confidence            33332    23333 99999999999999999999999999876543

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.29  E-value=0.0031  Score=55.13  Aligned_cols=94  Identities=27%  Similarity=0.361  Sum_probs=62.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEEEecc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~~~~~  162 (448)
                      ||+|+|+ |-.|+.+++.+.. .|+.=...+|...   +.      +-..|+|.         +..+. ..+.+      
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~------~~g~d~g~---------~~~~~~~~~~v------   57 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SA------KVGKDVGE---------LAGIGPLGVPV------   57 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---ST------TTTSBCHH---------HCTSST-SSBE------
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---cc------cccchhhh---------hhCcCCccccc------
Confidence            7999999 9999999999999 6666566666553   10      11234441         11111 11222      


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                        .++.++++.. +|+|||++ +++.-....++|.++++|+|.+.
T Consensus        58 --~~~l~~~~~~-~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   58 --TDDLEELLEE-ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             --BS-HHHHTTH--SEEEEES--HHHHHHHHHHHHHHT-EEEEE-
T ss_pred             --chhHHHhccc-CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEEC
Confidence              1456677776 99999999 88888889999999999999965

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.07  E-value=0.0029  Score=63.34  Aligned_cols=84  Identities=15%  Similarity=0.263  Sum_probs=55.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||+|..++..|+..|+.+|+|++.+.-                ...|++.+.+.+.+..+.+.+...+ 
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d-  186 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYD-  186 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEec-
Confidence            56789999999999999999999999999999664210                1135666666666555554443322 


Q ss_pred             cCC-ccchHHHhcCCCCeEEEccC
Q 013180          162 LYD-ASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       162 ~~~-~~~~~~ll~~~~D~VIda~D  184 (448)
                       ++ .+...+.+.. +|+||+||-
T Consensus       187 -~~~~~~~~~~~~~-~DilINaTp  208 (289)
T PRK12548        187 -LNDTEKLKAEIAS-SDILVNATL  208 (289)
T ss_pred             -hhhhhHHHhhhcc-CCEEEEeCC
Confidence             22 1223334443 788887763

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.02  E-value=0.0021  Score=64.21  Aligned_cols=78  Identities=21%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.|..++..|+..|+.+|+|++          |.         ..|++.+++++.....   +.... 
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~n----------Rt---------~~ka~~La~~~~~~~~---~~~~~-  179 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVIN----------RN---------PDKLSRLVDLGVQVGV---ITRLE-  179 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEe----------CC---------HHHHHHHHHHhhhcCc---ceecc-
Confidence            5678999999999999999999999999999964          43         2477777776643311   11111 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        ..+.....+. .+|+||+|+--
T Consensus       180 --~~~~~~~~~~-~~DiVInaTp~  200 (282)
T TIGR01809       180 --GDSGGLAIEK-AAEVLVSTVPA  200 (282)
T ss_pred             --chhhhhhccc-CCCEEEECCCC
Confidence              0011223334 49999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.97  E-value=0.0092  Score=63.62  Aligned_cols=132  Identities=17%  Similarity=0.203  Sum_probs=88.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.|+..=++.|..+|. ++++|-++.-                         +.+.++...-+|+.+.
T Consensus         9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~   62 (457)
T PRK10637          9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE   62 (457)
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence            5789999999999999999999999995 6999755411                         0111111112344444


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC--CCCccCCCceEEccc-----ccccCChhhH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG--AGARADPTRIRVADL-----RESTNDPLSR  233 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g--~G~k~dpt~i~i~di-----~~~~~dpl~~  233 (448)
                      ..+.+    +.+.+ +++||.||||.+....|.+.|++.++++-.+.-  .+...-|..++-+++     +.....-+++
T Consensus        63 ~~~~~----~dl~~-~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~  137 (457)
T PRK10637         63 GPFDE----SLLDT-CWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLAR  137 (457)
T ss_pred             CCCCh----HHhCC-CEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHH
Confidence            54543    33454 999999999999999999999999998655432  122233544433333     2334456777


Q ss_pred             HHHHHHhhhc
Q 013180          234 AVMHRLRKDY  243 (448)
Q Consensus       234 ~~r~~l~~~~  243 (448)
                      .+|.++....
T Consensus       138 ~lr~~ie~~~  147 (457)
T PRK10637        138 LLREKLESLL  147 (457)
T ss_pred             HHHHHHHHhc
Confidence            8888887754

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.95  E-value=0.0045  Score=64.85  Aligned_cols=76  Identities=25%  Similarity=0.316  Sum_probs=60.6

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      |++++|+|||+|-.|.-+|++|+..|+.+|++          .||+.         .|++-+++++.     .++.    
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~I----------aNRT~---------erA~~La~~~~-----~~~~----  227 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITI----------ANRTL---------ERAEELAKKLG-----AEAV----  227 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEE----------EcCCH---------HHHHHHHHHhC-----Ceee----
Confidence            89999999999999999999999999999999          89986         37888888776     2222    


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDT  188 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~  188 (448)
                        .-+...+.+.. +|+||.||..+..
T Consensus       228 --~l~el~~~l~~-~DvVissTsa~~~  251 (414)
T COG0373         228 --ALEELLEALAE-ADVVISSTSAPHP  251 (414)
T ss_pred             --cHHHHHHhhhh-CCEEEEecCCCcc
Confidence              22334555664 9999999886543

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.80  E-value=0.0037  Score=62.54  Aligned_cols=76  Identities=21%  Similarity=0.320  Sum_probs=55.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++++|+|+|+||.+..++..|+..|+.+|+|          .||..         .|++.+++.+.+..+.+....... 
T Consensus       125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V----------~NRt~---------~ra~~La~~~~~~~~~~~~~~~~~-  184 (283)
T COG0169         125 TGKRVLILGAGGAARAVAFALAEAGAKRITV----------VNRTR---------ERAEELADLFGELGAAVEAAALAD-  184 (283)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEE----------EeCCH---------HHHHHHHHHhhhcccccccccccc-
Confidence            4689999999999999999999999999999          56653         588888888888776322221111 


Q ss_pred             CCccchHHHhcCCCCeEEEccCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        .+..    . ++|+||+||--
T Consensus       185 --~~~~----~-~~dliINaTp~  200 (283)
T COG0169         185 --LEGL----E-EADLLINATPV  200 (283)
T ss_pred             --cccc----c-ccCEEEECCCC
Confidence              0111    1 38999988753

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.75  E-value=0.0078  Score=63.53  Aligned_cols=96  Identities=20%  Similarity=0.246  Sum_probs=61.0

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+|++|..+|+.|+..|. +++++|.+.-+                  ..+...+++.+..  ++  .+..
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~------------------~~~~~~~~l~~~~--~~--~~~~   59 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED------------------QLKEALEELGELG--IE--LVLG   59 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH------------------HHHHHHHHHHhcC--CE--EEeC
Confidence            678999999999999999999999996 69998876410                  1111122333222  22  2222


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ...    ++... .+|+||.++..... ..+...|+++|+|++.-
T Consensus        60 ~~~----~~~~~-~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~~~   98 (450)
T PRK14106         60 EYP----EEFLE-GVDLVVVSPGVPLD-SPPVVQAHKKGIEVIGE   98 (450)
T ss_pred             Ccc----hhHhh-cCCEEEECCCCCCC-CHHHHHHHHCCCcEEeH
Confidence            111    23344 49999998875333 33566677777777663

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.74  E-value=0.0033  Score=66.16  Aligned_cols=77  Identities=18%  Similarity=0.327  Sum_probs=55.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+.+++|+|+|+||.|..++++|+..|+.+|++          .||..         .|++.+++.+..    .++..  
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V----------~nRt~---------~ra~~La~~~~~----~~~~~--  232 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIML----------ANRTI---------EKAQKITSAFRN----ASAHY--  232 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE----------ECCCH---------HHHHHHHHHhcC----CeEec--
Confidence            477899999999999999999999999999999          56652         366666655431    12211  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                        +  +...+.+.. +|+||.||..+.
T Consensus       233 --~--~~l~~~l~~-aDiVI~aT~a~~  254 (414)
T PRK13940        233 --L--SELPQLIKK-ADIIIAAVNVLE  254 (414)
T ss_pred             --H--HHHHHHhcc-CCEEEECcCCCC
Confidence              1  233455664 999999998754

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.71  E-value=0.0098  Score=56.41  Aligned_cols=36  Identities=39%  Similarity=0.660  Sum_probs=32.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|+|+|.+|+.+++.|...|. ++.++|.+
T Consensus        25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~   60 (200)
T cd01075          25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN   60 (200)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            4788999999999999999999999997 67788765

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.69  E-value=0.016  Score=56.05  Aligned_cols=96  Identities=22%  Similarity=0.262  Sum_probs=63.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh-hCCCceEEEEecc-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS-IFPECHIDAKVLL-  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~-inP~v~v~~~~~~-  162 (448)
                      ++++|+|||-+|..+|+.|+..|- .+.+||.|.                          +++.+ +.......++... 
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~--------------------------~~~~~~~~~~~~~~~v~gd~   53 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDE--------------------------ERVEEFLADELDTHVVIGDA   53 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCH--------------------------HHHHHHhhhhcceEEEEecC
Confidence            479999999999999999999995 477777762                          11111 1111223333322 


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~  207 (448)
                      .+++.+.+.-..++|.+|-++++-.....+...+.+ +|+|-+.+-
T Consensus        54 t~~~~L~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar   99 (225)
T COG0569          54 TDEDVLEEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIAR   99 (225)
T ss_pred             CCHHHHHhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEE
Confidence            233334444234699999999997777777666655 899988865

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.67  E-value=0.0056  Score=60.88  Aligned_cols=76  Identities=21%  Similarity=0.360  Sum_probs=52.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|+|+|+||+|..++..|...|+.++++++.+                   ..|++.+++.+....+ +.+   .
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~  176 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---D  176 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---c
Confidence            3678899999999999999999999999999996542                   1356666666543321 111   0


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        .   ...+.+. ++|+||+|+-.
T Consensus       177 --~---~~~~~~~-~~DivInaTp~  195 (278)
T PRK00258        177 --L---ELQEELA-DFDLIINATSA  195 (278)
T ss_pred             --c---cchhccc-cCCEEEECCcC
Confidence              0   1123334 49999998753

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.66  E-value=0.0073  Score=60.56  Aligned_cols=83  Identities=19%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.+..++..|+..|+.+|+|++          |..      -...|++.+++++....+ +.+.... 
T Consensus       122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~n----------Rt~------~~~~ka~~la~~~~~~~~-~~~~~~~-  183 (288)
T PRK12749        122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN----------RRD------EFFDKALAFAQRVNENTD-CVVTVTD-  183 (288)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe----------CCc------cHHHHHHHHHHHhhhccC-ceEEEec-
Confidence            5678999999999999999999999999999955          321      024577888777754332 2222211 


Q ss_pred             cCCc-cchHHHhcCCCCeEEEccC
Q 013180          162 LYDA-SSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       162 ~~~~-~~~~~ll~~~~D~VIda~D  184 (448)
                       +.. +...+.+. ++|+||+||-
T Consensus       184 -~~~~~~l~~~~~-~aDivINaTp  205 (288)
T PRK12749        184 -LADQQAFAEALA-SADILTNGTK  205 (288)
T ss_pred             -hhhhhhhhhhcc-cCCEEEECCC
Confidence             111 11122233 4899998873

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.65  E-value=0.017  Score=58.53  Aligned_cols=84  Identities=24%  Similarity=0.272  Sum_probs=57.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +.+.+|+|+|+|.+|..++++|...|+.+++++|.+.                   .|++.+++.+..     .+.  . 
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~-------------------~ra~~la~~~g~-----~~~--~-  228 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTY-------------------ERAEELAKELGG-----NAV--P-  228 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH-------------------HHHHHHHHHcCC-----eEE--e-
Confidence            6899999999999999999999999999999976542                   344444444321     111  1 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC  196 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c  196 (448)
                         .++..+.+.. +|+||.|+.+...+..+....
T Consensus       229 ---~~~~~~~l~~-aDvVi~at~~~~~~~~~~~~~  259 (311)
T cd05213         229 ---LDELLELLNE-ADVVISATGAPHYAKIVERAM  259 (311)
T ss_pred             ---HHHHHHHHhc-CCEEEECCCCCchHHHHHHHH
Confidence               1233444554 999999999887743344443

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.63  E-value=0.014  Score=61.51  Aligned_cols=37  Identities=35%  Similarity=0.663  Sum_probs=33.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+++|+|+|+|.+|..++.+|...|+.+++++|.+
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs  213 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT  213 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3778999999999999999999999999999997653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.36  E-value=0.021  Score=55.34  Aligned_cols=123  Identities=24%  Similarity=0.282  Sum_probs=72.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|++++|+|.|.|.||..+++.|...|..-+.+.|.+         ..++.++-+-..+....++.-..+...-..   
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~---------g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~---   94 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD---------GTIYNPDGLDVPALLAYKKEHGSVLGFPGA---   94 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---------CeEECCCCCCHHHHHHHHHhcCCcccCCCc---
Confidence            56789999999999999999999999998877788765         334544434333333333322222111000   


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHR  238 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~  238 (448)
                       ..++.   ++++..++|++|.|.-. .-+.    +-+.+.+.++|..+.                   +.|+.....+.
T Consensus        95 -~~~~~---~~i~~~~~Dvlip~a~~~~i~~----~~~~~l~a~~I~egA-------------------N~~~t~~a~~~  147 (227)
T cd01076          95 -ERITN---EELLELDCDILIPAALENQITA----DNADRIKAKIIVEAA-------------------NGPTTPEADEI  147 (227)
T ss_pred             -eecCC---ccceeecccEEEecCccCccCH----HHHhhceeeEEEeCC-------------------CCCCCHHHHHH
Confidence             11122   23444469999998742 1111    233344566676543                   45666566677


Q ss_pred             Hhh
Q 013180          239 LRK  241 (448)
Q Consensus       239 l~~  241 (448)
                      |++
T Consensus       148 L~~  150 (227)
T cd01076         148 LHE  150 (227)
T ss_pred             HHH
Confidence            776

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.32  E-value=0.033  Score=53.57  Aligned_cols=107  Identities=21%  Similarity=0.172  Sum_probs=64.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|+.++|+|.|+|.||+++|+.|...|...+.+.|.+-         .+|.+   |-.-.+. .++..+...-..+. ..
T Consensus        20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g---------~i~~~---Gld~~~l-~~~~~~~~~~~~~~-~~   85 (217)
T cd05211          20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG---------YIYDP---GITTEEL-INYAVALGGSARVK-VQ   85 (217)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC---------cEECC---CCCHHHH-HHHHHhhCCccccC-cc
Confidence            57889999999999999999999999999999999763         34443   4432222 22222221111110 00


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHH-HHHHHcCCcEEEEcC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL-AACVRRGLKVLCATG  208 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~-~~c~~~~ip~I~~~g  208 (448)
                      +.++.   ++++.-++|++|-|.-.-    .++ +-+.+.+.++|..+.
T Consensus        86 ~~~~~---~~l~~~~~DVlipaA~~~----~i~~~~a~~l~a~~V~e~A  127 (217)
T cd05211          86 DYFPG---EAILGLDVDIFAPCALGN----VIDLENAKKLKAKVVAEGA  127 (217)
T ss_pred             cccCc---ccceeccccEEeeccccC----ccChhhHhhcCccEEEeCC
Confidence            11222   234444699999887432    122 345556677887654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.30  E-value=0.068  Score=57.77  Aligned_cols=122  Identities=20%  Similarity=0.308  Sum_probs=84.7

Q ss_pred             HHHHHhhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCce
Q 013180           77 ESQQKVSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECH  155 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~  155 (448)
                      .-++-+.+++|+|-|+| ++||++++.+++.+.++|.++|.|                   ++|-..+...+++..|..+
T Consensus       243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~-------------------E~~~~~i~~el~~~~~~~~  303 (588)
T COG1086         243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRD-------------------EYKLYLIDMELREKFPELK  303 (588)
T ss_pred             HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCc-------------------hHHHHHHHHHHHhhCCCcc
Confidence            34567899999999875 689999999999999999997766                   4455667778888888777


Q ss_pred             EEEEeccC-CccchHHHhcC-CCCeEEEccC---------CHHH--------HHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          156 IDAKVLLY-DASSEEEILSG-HPDFVLDCID---------NIDT--------KVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       156 v~~~~~~~-~~~~~~~ll~~-~~D~VIda~D---------n~~~--------r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                      +..+-..+ +.+.....+.+ ++|+|+-|..         |+..        -..+.++|.++++.-+-.-....-.+|+
T Consensus       304 ~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~Pt  383 (588)
T COG1086         304 LRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPT  383 (588)
T ss_pred             eEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCc
Confidence            77665544 33444444442 5899886654         3332        2356688888888755544333344555


Q ss_pred             c
Q 013180          217 R  217 (448)
Q Consensus       217 ~  217 (448)
                      .
T Consensus       384 N  384 (588)
T COG1086         384 N  384 (588)
T ss_pred             h
Confidence            3

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.30  E-value=0.033  Score=64.74  Aligned_cols=113  Identities=16%  Similarity=0.117  Sum_probs=62.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      -+.++|+|+|+|.+|+.++.+|++.+--+  .+..|.-+...+    +..-.|.-..+++.+++.    .|.++....+ 
T Consensus       567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~--~~~~~~~~~~~~----lV~VaD~~~~~a~~la~~----~~~~~~v~lD-  635 (1042)
T PLN02819        567 KKSQNVLILGAGRVCRPAAEYLASVKTIS--YYGDDSEEPTDV----HVIVASLYLKDAKETVEG----IENAEAVQLD-  635 (1042)
T ss_pred             ccCCcEEEECCCHHHHHHHHHHHhCcCcc--cccccccccccc----EEEEECCCHHHHHHHHHh----cCCCceEEee-
Confidence            35779999999999999999999864211  000000000000    011123333344444333    2333222211 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .-+.+....++.+ +|+||.|+.. .....+...|.++|+.++...
T Consensus       636 v~D~e~L~~~v~~-~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        636 VSDSESLLKYVSQ-VDVVISLLPA-SCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             cCCHHHHHHhhcC-CCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence            1133344444455 9999999887 345677788888888887754

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.18  E-value=0.013  Score=54.23  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=31.2

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|.+++|+|||+|. +|..++++|...|+ ++++++.
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r   76 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS   76 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence            58999999999998 59999999999998 6888773

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.09  E-value=0.035  Score=51.92  Aligned_cols=84  Identities=27%  Similarity=0.348  Sum_probs=54.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .+++++|+|+|. |++|..++..|+..| .++++++.+                   ..|++.+.+.+.+.. ..++...
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~   83 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV   83 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence            467899999996 999999999999998 488886543                   235555556554332 2333332


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                      . ..+.++..+.+.+ +|+||.|+....
T Consensus        84 ~-~~~~~~~~~~~~~-~diVi~at~~g~  109 (194)
T cd01078          84 E-TSDDAARAAAIKG-ADVVFAAGAAGV  109 (194)
T ss_pred             e-CCCHHHHHHHHhc-CCEEEECCCCCc
Confidence            1 1233334455654 899998876533

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.03  E-value=0.035  Score=58.58  Aligned_cols=36  Identities=33%  Similarity=0.529  Sum_probs=32.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+++|+|+|+|++|..++.+|...|+.+++++|.+
T Consensus       180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~  215 (423)
T PRK00045        180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT  215 (423)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            678999999999999999999999999999997554

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.02  E-value=0.049  Score=54.35  Aligned_cols=107  Identities=18%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHc----CC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|++.||+++|+|+.|..++++|..+    |+      ++|.++|.+-+=..+  |      .|+-..|...+++    
T Consensus        21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~--r------~~l~~~~~~~a~~----   88 (279)
T cd05312          21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKD--R------KDLTPFKKPFARK----   88 (279)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCC--C------CcchHHHHHHHhh----
Confidence            578899999999999999999999988    99      799999987542221  1      2233344443332    


Q ss_pred             hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .++          ....++.+.+.. ++|++|.++.  ..-++..|-.++.....|+|.+..
T Consensus        89 ~~~----------~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  140 (279)
T cd05312          89 DEE----------KEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALS  140 (279)
T ss_pred             cCc----------ccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence            232          011345666651 3999999885  455677788888888999999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.95  E-value=0.0092  Score=57.73  Aligned_cols=38  Identities=29%  Similarity=0.487  Sum_probs=35.4

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~  118 (448)
                      .+++.+|+|+|+||.|..++..|+..|+.  +|.|+|.+-
T Consensus        22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g   61 (226)
T cd05311          22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG   61 (226)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence            57889999999999999999999999999  999998873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.92  E-value=0.085  Score=51.94  Aligned_cols=108  Identities=19%  Similarity=0.221  Sum_probs=72.5

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCc----------eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG----------RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg----------~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|++.||+++|+|..|..++..|...|+.          +|.++|.+-+=..+-        .|.-..|...+ +.   
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r--------~~l~~~~~~~~-~~---   88 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR--------KETCPNEYHLA-RF---   88 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC--------CccCHHHHHHH-HH---
Confidence            578899999999999999999999999997          999999875422211        12222232221 11   


Q ss_pred             hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .++.-         ...++.+.+.. ++|++|.++.  +.-++..+-.++.....|+|.+..
T Consensus        89 ~~~~~---------~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLS  141 (254)
T cd00762          89 ANPER---------ESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALS  141 (254)
T ss_pred             cCccc---------ccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence            12110         11345555551 3999998775  344567777888888899999874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.82  E-value=0.024  Score=57.19  Aligned_cols=33  Identities=42%  Similarity=0.691  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      ++|.|+|+|++|+.+|..|+..|+. +|.|+|.+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~   34 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDIN   34 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            3799999999999999999999985 89998875

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.79  E-value=0.013  Score=53.55  Aligned_cols=113  Identities=20%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ++|.+||+|-.|+.+|.+|+++|.. +.+.|.+.=   .+.+.     .+.|-..++..++.+.+.  ++-+....   +
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~---~~~~~-----~~~g~~~~~s~~e~~~~~--dvvi~~v~---~   67 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPE---KAEAL-----AEAGAEVADSPAEAAEQA--DVVILCVP---D   67 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHH---HHHHH-----HHTTEEEESSHHHHHHHB--SEEEE-SS---S
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchh---hhhhh-----HHhhhhhhhhhhhHhhcc--cceEeecc---c
Confidence            4799999999999999999999965 788774421   11111     011222222222332222  22222221   1


Q ss_pred             ccchHHH------hc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          165 ASSEEEI------LS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       165 ~~~~~~l------l~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .+...+.      +.  .+-++|||++. +++....+.+.+..+|+.+|++.-.|+
T Consensus        68 ~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg  123 (163)
T PF03446_consen   68 DDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG  123 (163)
T ss_dssp             HHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred             chhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence            1222222      21  13578888876 677888999999999999999876664

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.76  E-value=0.047  Score=49.56  Aligned_cols=99  Identities=20%  Similarity=0.298  Sum_probs=60.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh--hhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS--SIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~--~inP~v~v~~~~~~~  163 (448)
                      +|.|+|+|..|+.+|..|+..| .+++|.+.|.=                   .++.+.+.=.  ...|.+++.... .+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~-------------------~~~~i~~~~~n~~~~~~~~l~~~i-~~   59 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE-------------------QIEEINETRQNPKYLPGIKLPENI-KA   59 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH-------------------HHHHHHHHTSETTTSTTSBEETTE-EE
T ss_pred             CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH-------------------HHHHHHHhCCCCCCCCCcccCccc-cc
Confidence            6899999999999999999999 77888776641                   1222221100  112333322110 11


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEEc
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT  207 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~~  207 (448)
                      + .+.++.+.+ .|+||-|+.+...+..+.+...  +.+.++|+..
T Consensus        60 t-~dl~~a~~~-ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   60 T-TDLEEALED-ADIIIIAVPSQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-SSHHHHHTT--SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             c-cCHHHHhCc-ccEEEecccHHHHHHHHHHHhhccCCCCEEEEec
Confidence            2 345566665 9999999999888877666554  5777888743

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.72  E-value=0.06  Score=53.05  Aligned_cols=108  Identities=22%  Similarity=0.282  Sum_probs=69.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHc----CC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----GV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lars----GV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|++.||+++|+|..|..++.+|+.+    |+      ++|.++|.+-+=..+        +.|+-    +.-+...+.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~--------r~~l~----~~~~~~a~~   88 (255)
T PF03949_consen   21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDD--------REDLN----PHKKPFARK   88 (255)
T ss_dssp             S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTT--------TSSHS----HHHHHHHBS
T ss_pred             CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEecc--------CccCC----hhhhhhhcc
Confidence            358999999999999999999999999    99      899999987432211        11221    222233344


Q ss_pred             hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .+|....         .++.+.+.+ ++|++|.++.  ..-++..+-.++..+..|+|.+..
T Consensus        89 ~~~~~~~---------~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LS  141 (255)
T PF03949_consen   89 TNPEKDW---------GSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLS  141 (255)
T ss_dssp             SSTTT-----------SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred             Ccccccc---------cCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECC
Confidence            4443222         245555543 4799999874  334566777888888999999874

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.67  E-value=0.02  Score=51.09  Aligned_cols=36  Identities=25%  Similarity=0.521  Sum_probs=32.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|+|+|++|..++..|...|..+++++|.+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            567899999999999999999999987789998765

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK09242 tropinone reductase; Provisional

Probab=95.62  E-value=0.31  Score=46.85  Aligned_cols=84  Identities=18%  Similarity=0.298  Sum_probs=56.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++++++++|+|+ ||+|..+++.|+..|. ++.+++.+                   ..+.+.+.+.+...+|..++..+
T Consensus         6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   65 (257)
T PRK09242          6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARD-------------------ADALAQARDELAEEFPEREVHGL   65 (257)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            467889999986 7999999999999997 57776643                   12344455666666676777666


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ...+.. +....++.      ++.|+||.+..
T Consensus        66 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~ag   97 (257)
T PRK09242         66 AADVSDDEDRRAILDWVEDHWDGLHILVNNAG   97 (257)
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            554433 22222221      35898887774

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.57  E-value=0.18  Score=45.85  Aligned_cols=98  Identities=31%  Similarity=0.407  Sum_probs=63.6

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc-CC
Q 013180           87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-YD  164 (448)
Q Consensus        87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~-~~  164 (448)
                      |+|+|+ |.+|..+++.|.+.| -+++.          +.|..         .|.+.        .+.+++.  ... .+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~-~~V~~----------~~R~~---------~~~~~--------~~~~~~~--~~d~~d   50 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRG-HEVTA----------LVRSP---------SKAED--------SPGVEII--QGDLFD   50 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTT-SEEEE----------EESSG---------GGHHH--------CTTEEEE--ESCTTC
T ss_pred             eEEECCCChHHHHHHHHHHHCC-CEEEE----------EecCc---------hhccc--------ccccccc--eeeehh
Confidence            789997 999999999999999 56666          33332         12222        5555543  333 34


Q ss_pred             ccchHHHhcCCCCeEEEccCC----HHHHHHHHHHHHHcCCcEE-EEcCCCCccCC
Q 013180          165 ASSEEEILSGHPDFVLDCIDN----IDTKVALLAACVRRGLKVL-CATGAGARADP  215 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn----~~~r~~l~~~c~~~~ip~I-~~~g~G~k~dp  215 (448)
                      .+...+.+.+ +|.||.|...    ...-..+.++|.+.+++-+ ..++.|...++
T Consensus        51 ~~~~~~al~~-~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~  105 (183)
T PF13460_consen   51 PDSVKAALKG-ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDP  105 (183)
T ss_dssp             HHHHHHHHTT-SSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGTTTC
T ss_pred             hhhhhhhhhh-cchhhhhhhhhcccccccccccccccccccccceeeeccccCCCC
Confidence            5556677775 9999999863    3334577788888888643 33334433333

...

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.52  E-value=0.13  Score=50.75  Aligned_cols=87  Identities=16%  Similarity=0.200  Sum_probs=58.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+|+|+|| |.+|..++..+... ++.-..++|.+.-   .....                        ....+.     
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~~------------------------~~~~i~-----   49 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVGQ------------------------GALGVA-----   49 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---ccccc------------------------CCCCcc-----
Confidence            47999999 99999999988764 5555556666521   11100                        001111     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                       ..++.++++. .+|+|||++ ++..-..+...|.++|+|++.+
T Consensus        50 -~~~dl~~ll~-~~DvVid~t-~p~~~~~~~~~al~~G~~vvig   90 (257)
T PRK00048         50 -ITDDLEAVLA-DADVLIDFT-TPEATLENLEFALEHGKPLVIG   90 (257)
T ss_pred             -ccCCHHHhcc-CCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE
Confidence             1134556665 499999999 5555588889999999999976

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.43  E-value=0.055  Score=48.42  Aligned_cols=76  Identities=26%  Similarity=0.312  Sum_probs=50.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||.|||+ |.||+.+|..|+..|+. +|.|+|.+                   ..|++..+.-+....+..........-
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~~   62 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITSG   62 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEES
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhcccccccccc
Confidence            7999999 99999999999999985 49997755                   225565556666654444333222211


Q ss_pred             CccchHHHhcCCCCeEEEccCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      +    .+-+.+ .|+||-+...
T Consensus        63 ~----~~~~~~-aDivvitag~   79 (141)
T PF00056_consen   63 D----YEALKD-ADIVVITAGV   79 (141)
T ss_dssp             S----GGGGTT-ESEEEETTST
T ss_pred             c----cccccc-ccEEEEeccc
Confidence            1    122343 9999977654

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.40  E-value=0.12  Score=52.72  Aligned_cols=104  Identities=18%  Similarity=0.302  Sum_probs=57.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHc------C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           86 YVVVIGLGGVGSHAAAMLLRS------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~Lars------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +|.|+|+|.||+.+++.|..-      |  +.-+.+.|..         ..++....+.-.+....++. ..+.      
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~---------g~l~~~~Gldl~~l~~~~~~-g~l~------   65 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSK---------LSYYNERGLDIGKIISYKEK-GRLE------   65 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECC---------CcccCCcCCChHHHHHHHhc-Cccc------
Confidence            799999999999999999872      3  3334444533         12233333332222111111 1111      


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHHH---HHHHHHHHHHcCCcEEEEc
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDT---KVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~---r~~l~~~c~~~~ip~I~~~  207 (448)
                      .+.  .+..+.++++..++|+||+|+.+..+   -..+...+.++|+.+|.+.
T Consensus        66 ~~~--~~~~~~~~ll~~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaN  116 (326)
T PRK06392         66 EID--YEKIKFDEIFEIKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTAN  116 (326)
T ss_pred             cCC--CCcCCHHHHhcCCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCC
Confidence            110  11113445554469999999963221   3445577788999999864

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.38  E-value=0.06  Score=53.91  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=57.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +..+|+|+|+|++|..++..+...|+..+.++|.+.      .|             .+.+.. ..-+|+.         
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~------~r-------------l~~a~~-~~~i~~~---------  194 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNP------RR-------------RDGATG-YEVLDPE---------  194 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH------HH-------------HHhhhh-ccccChh---------
Confidence            567899999999999999988889998888776431      11             111110 0011210         


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        .+     ....+|+||||+.+..+.....+..+..|.-++.+
T Consensus       195 --~~-----~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       195 --KD-----PRRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             --hc-----cCCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEe
Confidence              00     12249999999999776666677777777755443

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=95.37  E-value=0.091  Score=52.80  Aligned_cols=100  Identities=24%  Similarity=0.363  Sum_probs=54.2

Q ss_pred             EEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC--ceEE--EEec
Q 013180           87 VVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE--CHID--AKVL  161 (448)
Q Consensus        87 VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~--v~v~--~~~~  161 (448)
                      |+|- |+|++||++++.|++.+..+|.++|.|--.+.+                   +.+.+++..|+  ++..  .+..
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~-------------------l~~~l~~~~~~~~v~~~~~~vig   61 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYE-------------------LERELRSRFPDPKVRFEIVPVIG   61 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHH-------------------HHHHCHHHC--TTCEEEEE--CT
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHH-------------------HHHHHhhcccccCcccccCceee
Confidence            5677 457899999999999999999999887544444                   44444444433  3222  2222


Q ss_pred             cCC-ccchHHHhc-CCCCeEEEccC---------CHH--------HHHHHHHHHHHcCCcEEE
Q 013180          162 LYD-ASSEEEILS-GHPDFVLDCID---------NID--------TKVALLAACVRRGLKVLC  205 (448)
Q Consensus       162 ~~~-~~~~~~ll~-~~~D~VIda~D---------n~~--------~r~~l~~~c~~~~ip~I~  205 (448)
                      .+. .+....++. .++|+|+-+..         |+.        .-..+.++|.++++.-+-
T Consensus        62 Dvrd~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v  124 (293)
T PF02719_consen   62 DVRDKERLNRIFEEYKPDIVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFV  124 (293)
T ss_dssp             SCCHHHHHHHHTT--T-SEEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEE
T ss_pred             cccCHHHHHHHHhhcCCCEEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence            332 223344443 14888887665         221        123567888888876433

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.36  E-value=0.028  Score=45.71  Aligned_cols=37  Identities=35%  Similarity=0.558  Sum_probs=34.0

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..+..++++|+|+|++|..++.+|...|..++.++|.
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3478899999999999999999999998889999888

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.34  E-value=0.049  Score=57.59  Aligned_cols=37  Identities=35%  Similarity=0.576  Sum_probs=33.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+.+++|+|+|+|.+|..+|..|...|+ +++++|.|.
T Consensus       209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp  245 (425)
T PRK05476        209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP  245 (425)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence            3589999999999999999999999998 699988764

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.32  E-value=0.19  Score=49.57  Aligned_cols=38  Identities=32%  Similarity=0.405  Sum_probs=33.6

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|++++|+|.|.|.||+++|+.|...|..-+.+.|.+
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~   71 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK   71 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            45789999999999999999999999998777787844

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.31  E-value=0.045  Score=44.86  Aligned_cols=90  Identities=26%  Similarity=0.328  Sum_probs=56.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC--ceEEEE-eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV--GRLLLV-DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV--g~i~Li-D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ||.|||+|.+|+.++..|+++|+  .++.++ +.+                   ..|++.+++++    + +.+.     
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~-------------------~~~~~~~~~~~----~-~~~~-----   51 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS-------------------PEKAAELAKEY----G-VQAT-----   51 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS-------------------HHHHHHHHHHC----T-TEEE-----
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc-------------------HHHHHHHHHhh----c-cccc-----
Confidence            68999999999999999999994  344432 211                   22333333332    2 1221     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHH-HHHcCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAA-CVRRGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~-c~~~~ip~I~~~  207 (448)
                        ..+..+.+.. .|+||-|+........+.+. ....+.-+|+.+
T Consensus        52 --~~~~~~~~~~-advvilav~p~~~~~v~~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   52 --ADDNEEAAQE-ADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA   94 (96)
T ss_dssp             --SEEHHHHHHH-TSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred             --cCChHHhhcc-CCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence              1123455553 99999999998888777666 455677777754

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.29  E-value=0.036  Score=55.20  Aligned_cols=34  Identities=26%  Similarity=0.298  Sum_probs=31.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|+|+||.+..++..|+..|+.+|+|++.+
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~  155 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARN  155 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3589999999999999999999999999998765

>PLN00203 glutamyl-tRNA reductase

Probab=95.24  E-value=0.065  Score=58.08  Aligned_cols=78  Identities=21%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      |.+++|+|||+|.+|..++++|...|+.+|++++.+                   ..|++.+++.+    +.+.+...  
T Consensus       264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs-------------------~era~~La~~~----~g~~i~~~--  318 (519)
T PLN00203        264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS-------------------EERVAALREEF----PDVEIIYK--  318 (519)
T ss_pred             CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC-------------------HHHHHHHHHHh----CCCceEee--
Confidence            668999999999999999999999999999995433                   12444444443    22323221  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                        ..++..+.+.+ +|+||.||....
T Consensus       319 --~~~dl~~al~~-aDVVIsAT~s~~  341 (519)
T PLN00203        319 --PLDEMLACAAE-ADVVFTSTSSET  341 (519)
T ss_pred             --cHhhHHHHHhc-CCEEEEccCCCC
Confidence              11233455554 999999986544

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.084  Score=52.57  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=33.8

Q ss_pred             cCHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           74 FGVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        74 ~G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+...+..++++.|+|.|+ ||+|.++++.|++.|. ++.+++.+
T Consensus         6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~   49 (306)
T PRK06197          6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRN   49 (306)
T ss_pred             CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4444456678899999986 8999999999999997 57776543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.21  E-value=0.059  Score=54.06  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|+|+|+|++|..+|+.|...|. +++++|.+
T Consensus       148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~  183 (287)
T TIGR02853       148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS  183 (287)
T ss_pred             CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5778999999999999999999999997 89987764

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=95.19  E-value=0.017  Score=53.91  Aligned_cols=98  Identities=22%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc---cccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +|.|||+|..|+.+|..++++|. +++|+|.+.-........+   +-...+-|....+.....+..+.      ..   
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~------~~---   70 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS------FT---   70 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE------EE---
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc------cc---
Confidence            68999999999999999999995 5999998654433222111   00111223333333334443332      11   


Q ss_pred             CCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH
Q 013180          163 YDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR  198 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~  198 (448)
                         .+.+++. + +|+||.|+. +.+.|..+.+...+
T Consensus        71 ---~dl~~~~-~-adlViEai~E~l~~K~~~~~~l~~  102 (180)
T PF02737_consen   71 ---TDLEEAV-D-ADLVIEAIPEDLELKQELFAELDE  102 (180)
T ss_dssp             ---SSGGGGC-T-ESEEEE-S-SSHHHHHHHHHHHHC
T ss_pred             ---cCHHHHh-h-hheehhhccccHHHHHHHHHHHHH
Confidence               1234444 3 999999984 77888766654443

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK08374 homoserine dehydrogenase; Provisional

Probab=95.15  E-value=0.15  Score=52.22  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHH--------cCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLR--------SGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lar--------sGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      -+|.|+|+|.||+.+++.|..        .|+.  =+.+.|.+.         .++.+..+...+.   .+...+-..-.
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~---------~~~~~~Gid~~~l---~~~~~~~~~~~   70 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSG---------TIWLPEDIDLREA---KEVKENFGKLS   70 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCc---------cccCCCCCChHHH---HHhhhccCchh
Confidence            589999999999999999876        5632  333445331         1222222222222   22222211111


Q ss_pred             eEEEEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .+..... ....+.++++. .++|+||||+.. +.-..+...|.+.|+++|.+.
T Consensus        71 ~~~~~~~-~~~~~~~ell~~~~~DVvVd~t~~-~~a~~~~~~al~~G~~VVtan  122 (336)
T PRK08374         71 NWGNDYE-VYNFSPEEIVEEIDADIVVDVTND-KNAHEWHLEALKEGKSVVTSN  122 (336)
T ss_pred             hcccccc-ccCCCHHHHHhcCCCCEEEECCCc-HHHHHHHHHHHhhCCcEEECC
Confidence            1100000 00113456663 459999999964 455566677888999999854

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.12  E-value=0.26  Score=51.92  Aligned_cols=99  Identities=19%  Similarity=0.175  Sum_probs=63.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +...+|+|+|+|.+|..+++.|...|. .++++|.|.=                   +++.    +.+..+.+.+  +..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~~~----~~~~~~~~~~--i~g  282 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RAEE----LAEELPNTLV--LHG  282 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHHH----HHHHCCCCeE--EEC
Confidence            457899999999999999999999887 5888887621                   1111    1111222322  222


Q ss_pred             c-CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          162 L-YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       162 ~-~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      . .+.+...+....++|.||.++++......+...|++.+.+.+.+
T Consensus       283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            2 12222222222359999999988777777777788887765554

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.11  E-value=0.15  Score=52.33  Aligned_cols=107  Identities=19%  Similarity=0.247  Sum_probs=59.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc--------CC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS--------GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars--------GV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      -+|.|+|+|.+|+.+++.|...        |+  .-..++|.+.         .++....+-..++...++..    .  
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~---------~~~~~~Gi~~~~~~~~~~~~----~--   67 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSG---------SAIDPDGLDLELALKVKEET----G--   67 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCC---------cccCcCCCCHHHHHHHHhcc----C--
Confidence            4799999999999999999765        43  3344445321         12222222122222111111    1  


Q ss_pred             eEEEEeccCCccchHHHhc-CCCCeEEEccCCH----HHHHHHHHHHHHcCCcEEEE
Q 013180          155 HIDAKVLLYDASSEEEILS-GHPDFVLDCIDNI----DTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~----~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .+..+.......+..+++. .++|+||+|+.+.    ..-......|.++|+++|.+
T Consensus        68 ~~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVta  124 (341)
T PRK06270         68 KLADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTS  124 (341)
T ss_pred             CcccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcC
Confidence            0111111111124455553 3589999999763    23456667888899999985

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.11  E-value=0.1  Score=55.60  Aligned_cols=35  Identities=46%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|+|+|++|.++|..|...|. +++++|..
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~   48 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG   48 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567899999999999999999999997 59998854

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=95.10  E-value=0.14  Score=50.62  Aligned_cols=35  Identities=23%  Similarity=0.432  Sum_probs=30.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+++|+|+|+||+|..++..|+..|. +++++|.+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~  149 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRT  149 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            346789999999999999999999996 89998754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.09  E-value=0.051  Score=54.46  Aligned_cols=34  Identities=26%  Similarity=0.491  Sum_probs=31.6

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .+++++|+|+|+|+ +|..++.+|...|. ++++++
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~  190 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICH  190 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            47889999999999 99999999999998 899976

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.06  E-value=0.044  Score=54.79  Aligned_cols=34  Identities=29%  Similarity=0.471  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ++|.|||+|..|+.+|.+|+++|. .++++|.+.=
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence            489999999999999999999996 5999987643

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.03  E-value=0.18  Score=53.63  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|.|-||++.|+.|...|..=+.+-|.+
T Consensus       225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~  261 (444)
T PRK14031        225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD  261 (444)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            4889999999999999999999999998888888844

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.98  E-value=0.14  Score=51.57  Aligned_cols=75  Identities=15%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ..+|.|+|+|.+|+.+|..|+..|. +++++|.+.-                                            
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~~--------------------------------------------   38 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRSG--------------------------------------------   38 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCCC--------------------------------------------
Confidence            4689999999999999999999995 6888886630                                            


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH---HcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~---~~~ip~I~~  206 (448)
                        .+..+.+.+ .|+||-|+-+...+..+.....   ..+..+|+.
T Consensus        39 --~~~~~~~~~-advvi~~vp~~~~~~v~~~l~~~~~~~~~ivi~~   81 (308)
T PRK14619         39 --LSLAAVLAD-ADVIVSAVSMKGVRPVAEQVQALNLPPETIIVTA   81 (308)
T ss_pred             --CCHHHHHhc-CCEEEEECChHHHHHHHHHHHHhcCCCCcEEEEe
Confidence              122344444 9999999988666655555432   235556664

>PRK04148 hypothetical protein; Provisional

Probab=94.94  E-value=0.27  Score=43.85  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++.+|++|||| -|..+|..|+..|. .++-+|-+.-                   .++.+++.        .+++....
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~-------------------aV~~a~~~--------~~~~v~dD   66 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK-------------------AVEKAKKL--------GLNAFVDD   66 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH-------------------HHHHHHHh--------CCeEEECc
Confidence            45789999999 99999999999995 6777775522                   33333332        12333333


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      +...+ .++-. ++|+|-.+--..+....|.+.+++.+.+++--.-.
T Consensus        67 lf~p~-~~~y~-~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~  111 (134)
T PRK04148         67 LFNPN-LEIYK-NAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLS  111 (134)
T ss_pred             CCCCC-HHHHh-cCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            32222 23344 49999999999999999999999999999885543

>PRK13529 malate dehydrogenase; Provisional

Probab=94.94  E-value=0.15  Score=55.45  Aligned_cols=131  Identities=17%  Similarity=0.201  Sum_probs=87.0

Q ss_pred             HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHH----cCC------ceEEEE
Q 013180           63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLV  114 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~Li  114 (448)
                      +.++|...+..|..+-|                  ++|++.+|+++|+|+.|..+|++|+.    .|+      .+|.++
T Consensus       256 iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~v  335 (563)
T PRK13529        256 ILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMV  335 (563)
T ss_pred             HHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence            45677767777765533                  47889999999999999999999997    699      599999


Q ss_pred             eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHH
Q 013180          115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA  191 (448)
Q Consensus       115 D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~  191 (448)
                      |.+-+=.++        ..|+...|...++..    ++.....   ..-...++.+.+.. ++|++|.++.  +.-++..
T Consensus       336 D~~GLl~~~--------r~~l~~~k~~fa~~~----~~~~~~~---~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~ev  400 (563)
T PRK13529        336 DRQGLLTDD--------MPDLLDFQKPYARKR----EELADWD---TEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEI  400 (563)
T ss_pred             cCCCeEeCC--------CCcchHHHHHHhhhc----ccccccc---cccCCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence            987542221        123444555544431    2210010   00111245555554 5799998886  4556777


Q ss_pred             HHHHHHHcCCcEEEEcC
Q 013180          192 LLAACVRRGLKVLCATG  208 (448)
Q Consensus       192 l~~~c~~~~ip~I~~~g  208 (448)
                      +-.++.....|+|.+..
T Consensus       401 v~~Ma~~~erPIIFaLS  417 (563)
T PRK13529        401 VKEMAAHCERPIIFPLS  417 (563)
T ss_pred             HHHHHhcCCCCEEEECC
Confidence            88888888899999874

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=94.84  E-value=0.17  Score=55.17  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=74.8

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHH-----cCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLR-----SGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS  148 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lar-----sGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~  148 (448)
                      ++|++.+|+++|+|..|..+|.+|+.     .|+      ++|.++|.+-+=..+  |     .+++-..|...++.   
T Consensus       317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~--r-----~~~l~~~k~~fa~~---  386 (581)
T PLN03129        317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKS--R-----KDSLQPFKKPFAHD---  386 (581)
T ss_pred             CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCC--C-----CccChHHHHHHHhh---
Confidence            47899999999999999999999998     477      799999988432221  1     01144455555543   


Q ss_pred             hhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          149 SIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       149 ~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                        .+.           ..++.+.+.. ++|++|.++.  +.-+...|-.+|.....|+|.+..
T Consensus       387 --~~~-----------~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLS  436 (581)
T PLN03129        387 --HEP-----------GASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALS  436 (581)
T ss_pred             --ccc-----------CCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECC
Confidence              111           1345555553 5899999885  556677788888888999999874

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.82  E-value=0.2  Score=53.08  Aligned_cols=32  Identities=34%  Similarity=0.481  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|+|+|+.|..+|..|.+.|. ++++.|..
T Consensus         1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~   32 (459)
T PRK02705          1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRN   32 (459)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            479999999999999999999997 68888855

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.81  E-value=0.096  Score=52.59  Aligned_cols=117  Identities=21%  Similarity=0.260  Sum_probs=69.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEecc-C
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~  163 (448)
                      +|.|||+|-.|+.++.+|+..|. ++.++|.+.-....+        .+.|..-+....+.+... ++++-+...+.. .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~--------~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~   72 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEAL--------AEEGATGADSLEELVAKLPAPRVVWLMVPAGEI   72 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHH--------HHCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence            69999999999999999999996 588888763221111        011222122222223322 344444443322 1


Q ss_pred             CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ..+....+..  .+-++|||++. ++..-..+.+.+.+.|+.++++.-.|+
T Consensus        73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~  123 (301)
T PRK09599         73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG  123 (301)
T ss_pred             HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence            1112222221  12478999865 455666778899999999999766664

>PRK08618 ornithine cyclodeaminase; Validated

Probab=94.78  E-value=0.16  Score=51.68  Aligned_cols=97  Identities=15%  Similarity=0.272  Sum_probs=64.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      .+-..++|+|+|+|+.|...+..|. ..|+.++.++|.+                   ..|++.+.+++.+..+ +++..
T Consensus       123 a~~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~  182 (325)
T PRK08618        123 AREDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYV  182 (325)
T ss_pred             cCCCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEE
Confidence            3445688999999999998888775 4689999996544                   2466666777764332 33333


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      +      ++.++.+.+ .|+||.||.+...  .+. .+.+.|.-++..
T Consensus       183 ~------~~~~~~~~~-aDiVi~aT~s~~p--~i~-~~l~~G~hV~~i  220 (325)
T PRK08618        183 V------NSADEAIEE-ADIIVTVTNAKTP--VFS-EKLKKGVHINAV  220 (325)
T ss_pred             e------CCHHHHHhc-CCEEEEccCCCCc--chH-HhcCCCcEEEec
Confidence            2      234555654 9999999987743  333 455667655443

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.76  E-value=0.2  Score=52.77  Aligned_cols=36  Identities=33%  Similarity=0.605  Sum_probs=32.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+++|+|+|+|.+|..++..+...|+ ++.++|.|.
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~  235 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDP  235 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence            578899999999999999999999999 688888763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=94.74  E-value=0.4  Score=48.62  Aligned_cols=100  Identities=13%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ++|+|.|+ |-+|+++++.|...|=-+++.+|.+.-   ++                       ..+.+.-.++.+...+
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~---~~-----------------------~~~~~~~~~~~~~~Dl   55 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTD---RL-----------------------GDLVNHPRMHFFEGDI   55 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHH---HH-----------------------HHhccCCCeEEEeCCC
Confidence            47999997 999999999999864236777764321   00                       0111111233333333


Q ss_pred             C--ccchHHHhcCCCCeEEEccC-----------------CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 D--ASSEEEILSGHPDFVLDCID-----------------NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~--~~~~~~ll~~~~D~VIda~D-----------------n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .  .+...+++.+ +|+||.|..                 |...-..+.++|++.+..+|..++.+.
T Consensus        56 ~~~~~~~~~~~~~-~d~ViH~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~v  121 (347)
T PRK11908         56 TINKEWIEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEV  121 (347)
T ss_pred             CCCHHHHHHHHcC-CCEEEECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEeccee
Confidence            2  2233444554 888886532                 112234667888888889998776543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=94.69  E-value=0.08  Score=53.14  Aligned_cols=117  Identities=19%  Similarity=0.208  Sum_probs=65.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEeccCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~~~  164 (448)
                      +|.|||+|-.|+.++.+|++.|. ++.++|.+.-....+...        |...+....+..... .+++-+.+.+....
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~   72 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV   72 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence            69999999999999999999995 577777664222111111        111111111111111 23433333332222


Q ss_pred             ccchHHHhc--CCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          165 ASSEEEILS--GHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       165 ~~~~~~ll~--~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .+-.+++..  .+-++|||++... .....+.+.+.+.|++++.+.-.|+
T Consensus        73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg  122 (298)
T TIGR00872        73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGG  122 (298)
T ss_pred             HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCC
Confidence            222233321  1247899987653 5556666778888999998776654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=94.64  E-value=0.064  Score=55.02  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=32.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      .|.+++|+|||+|-.|..++++|...|+.+|++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~  204 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFC  204 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEE
Confidence            4889999999999999999999999999999993

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.61  E-value=0.4  Score=41.40  Aligned_cols=97  Identities=22%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||.||| .|-+|++++..|...=- .-+.++....               ..|++=.+...    ......++....  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~---------------~~g~~~~~~~~----~~~~~~~~~~~~--~   59 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR---------------SAGKPLSEVFP----HPKGFEDLSVED--A   59 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT---------------TTTSBHHHTTG----GGTTTEEEBEEE--T
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc---------------ccCCeeehhcc----ccccccceeEee--c
Confidence            699999 89999999999998432 2233322221               24443111111    111122222221  1


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                         ..+. +. +.|+||.|+++-.++....++ .+.|+++|+.++.
T Consensus        60 ---~~~~-~~-~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~   99 (121)
T PF01118_consen   60 ---DPEE-LS-DVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGD   99 (121)
T ss_dssp             ---SGHH-HT-TESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSST
T ss_pred             ---chhH-hh-cCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHH
Confidence               1223 34 499999999997776665555 8899999996653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.59  E-value=0.079  Score=57.64  Aligned_cols=34  Identities=32%  Similarity=0.537  Sum_probs=30.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++|+|+|+||+|..++..|+..|+ ++.+++.
T Consensus       377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR  410 (529)
T PLN02520        377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR  410 (529)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence            667899999999999999999999999 8999653

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.58  E-value=0.63  Score=44.30  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +++|+|.| .||+|..+++.|++.|. ++.+++.+.                   .+.+.+.+.+.+.+|..+++.+...
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~D   61 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRT-------------------DRLEELKAELLARYPGIKVAVAALD   61 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEEcC
Confidence            56788887 68999999999999995 677766541                   2233444555556666667666554


Q ss_pred             CCcc-chHHHhc------CCCCeEEEcc
Q 013180          163 YDAS-SEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       163 ~~~~-~~~~ll~------~~~D~VIda~  183 (448)
                      ++.. ....++.      +..|+||.+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~id~vi~~a   89 (248)
T PRK08251         62 VNDHDQVFEVFAEFRDELGGLDRVIVNA   89 (248)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4432 2222221      2478888765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=94.57  E-value=0.49  Score=45.38  Aligned_cols=36  Identities=28%  Similarity=0.449  Sum_probs=30.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~   43 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRD   43 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            467899999986 9999999999999997 57776654

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.54  E-value=0.1  Score=54.19  Aligned_cols=35  Identities=34%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..++|+|+|+|.+|..++..|.+.|+ +++++|.+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~  199 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN  199 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            678899999999999999999999998 69998875

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=94.53  E-value=0.13  Score=51.55  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=67.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEecc-C
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL-Y  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~-~  163 (448)
                      +|.|||+|-+|+.++.+|++.|. ++.++|.+.-...-     +   .+.|...+....+.+.+. ++++-+.+.+.. .
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~-----~---~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~   72 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDV-----A---GKLGITARHSLEELVSKLEAPRTIWVMVPAGEV   72 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH-----H---HHCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence            69999999999999999999996 57888765311110     1   112322222222222221 133333333322 1


Q ss_pred             CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ..+-.+.+..  .+-.+|||++. ++..-..+.+.+.++++.++++.-.|+
T Consensus        73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~  123 (299)
T PRK12490         73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG  123 (299)
T ss_pred             HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence            1111233322  12368999854 466667777888889999999776665

>PRK07576 short chain dehydrogenase; Provisional

Probab=94.53  E-value=0.35  Score=46.99  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++.++++++|+|.|+ ||+|+++++.|+..|.. +.++|.+
T Consensus         3 ~~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r~   42 (264)
T PRK07576          3 TMFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASRS   42 (264)
T ss_pred             ccccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            445788999999987 89999999999999964 8887754

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.50  E-value=0.19  Score=50.89  Aligned_cols=80  Identities=15%  Similarity=0.106  Sum_probs=55.9

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +.+...++|+|+|+|+.|...+..+.. .++.+|++++.+                   ..|++.+++++.+...  .+.
T Consensus       120 La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~  178 (314)
T PRK06141        120 LARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAE  178 (314)
T ss_pred             hCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceE
Confidence            345567999999999999999987765 678899985332                   4577777777765422  232


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCH
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                      ..      ++..+.+.+ +|+|+.|+.+.
T Consensus       179 ~~------~~~~~av~~-aDIVi~aT~s~  200 (314)
T PRK06141        179 VV------TDLEAAVRQ-ADIISCATLST  200 (314)
T ss_pred             Ee------CCHHHHHhc-CCEEEEeeCCC
Confidence            21      234455554 99999999865

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.49  E-value=0.15  Score=48.40  Aligned_cols=36  Identities=28%  Similarity=0.504  Sum_probs=30.3

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.| .|++|.++++.|++.|. ++.+++.+
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~   39 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDIC   39 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            46678999998 69999999999999997 57776655

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=94.48  E-value=0.29  Score=50.02  Aligned_cols=102  Identities=29%  Similarity=0.493  Sum_probs=68.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHH-HHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL-CLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~-~~~~~l~~inP~v~v~~~~~  161 (448)
                      ....|.|+||||+|-.+..-+..+|.++|.-||...-.+ .+.+++-++.  .=-+|-. =+.+.+              
T Consensus       185 ~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl-~~A~~fGAT~--~vn~~~~~~vv~~i--------------  247 (366)
T COG1062         185 PGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKL-ELAKKFGATH--FVNPKEVDDVVEAI--------------  247 (366)
T ss_pred             CCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHH-HHHHhcCCce--eecchhhhhHHHHH--------------
Confidence            368899999999999999999999999999998653221 2233332211  0000000 111222              


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                             .++-.+..|++|||+.|.++...-.+.|++.|.-++-+..
T Consensus       248 -------~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~  287 (366)
T COG1062         248 -------VELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVA  287 (366)
T ss_pred             -------HHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecC
Confidence                   2222324999999999999988888999998887776543

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.44  E-value=0.62  Score=47.01  Aligned_cols=36  Identities=17%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcC-CceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSG-VGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsG-Vg~i~LiD~D  117 (448)
                      +++++|+|.|+ |++|+++++.|+..| ..+++++|.+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~   39 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD   39 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence            45788999986 899999999999987 4578887754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=94.42  E-value=0.21  Score=52.31  Aligned_cols=100  Identities=11%  Similarity=0.099  Sum_probs=59.2

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCC-cccccccCC---------ccCc-----------
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSL-NRHAVATRA---------DVGT-----------  137 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNL-nRq~l~~~~---------dvG~-----------  137 (448)
                      +...++.+|+|+|.|.+|..+++.|...|. .+.++|.|.++..-- +..++..+.         .+.+           
T Consensus       235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD  313 (393)
T PRK10537        235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND  313 (393)
T ss_pred             hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence            334457899999999999999999998886 688999885532210 111111110         1111           


Q ss_pred             hHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEE
Q 013180          138 PKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLD  181 (448)
Q Consensus       138 ~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VId  181 (448)
                      .....+....+++||++++.+...  ++++.+.+-.-.+|.||.
T Consensus       314 ~~Nl~ivL~ar~l~p~~kIIa~v~--~~~~~~~L~~~GaD~VIs  355 (393)
T PRK10537        314 ADNAFVVLAAKEMSSDVKTVAAVN--DSKNLEKIKRVHPDMIFS  355 (393)
T ss_pred             HHHHHHHHHHHHhCCCCcEEEEEC--CHHHHHHHHhcCCCEEEC
Confidence            112233445677788777766543  344444443334777774

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.41  E-value=0.48  Score=40.00  Aligned_cols=91  Identities=18%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-Cc
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-DA  165 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~~  165 (448)
                      |+|+|+|.+|-.+++.|...| -++.++|.|.=.                   +    +.+.+..    +.++.... +.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~-~~vvvid~d~~~-------------------~----~~~~~~~----~~~i~gd~~~~   52 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGG-IDVVVIDRDPER-------------------V----EELREEG----VEVIYGDATDP   52 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTT-SEEEEEESSHHH-------------------H----HHHHHTT----SEEEES-TTSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCC-CEEEEEECCcHH-------------------H----HHHHhcc----cccccccchhh
Confidence            789999999999999999944 679999988321                   1    1122222    22222322 23


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cC-CcEEE
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RG-LKVLC  205 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~-ip~I~  205 (448)
                      +...+.--.+++.||.++++......+...+++ .+ ++++.
T Consensus        53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   53 EVLERAGIEKADAVVILTDDDEENLLIALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEE
T ss_pred             hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            333333223599999999999888888888887 33 34443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.41  E-value=0.24  Score=49.62  Aligned_cols=32  Identities=31%  Similarity=0.439  Sum_probs=28.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGH-DVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence            69999999999999999999996 488887653

>PRK07062 short chain dehydrogenase; Provisional

Probab=94.40  E-value=0.3  Score=47.23  Aligned_cols=62  Identities=21%  Similarity=0.343  Sum_probs=43.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++++.++|.|+ ||+|.++++.|++.|.. +.+++.+.                   .|.+.+.+.+.+..|..++..+.
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~   65 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGRDE-------------------ERLASAEARLREKFPGARLLAAR   65 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH-------------------HHHHHHHHHHHhhCCCceEEEEE
Confidence            67789999988 68999999999999974 77766542                   23444555666666666665554


Q ss_pred             ccC
Q 013180          161 LLY  163 (448)
Q Consensus       161 ~~~  163 (448)
                      ..+
T Consensus        66 ~D~   68 (265)
T PRK07062         66 CDV   68 (265)
T ss_pred             ecC
Confidence            433

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=94.40  E-value=0.2  Score=51.06  Aligned_cols=98  Identities=21%  Similarity=0.232  Sum_probs=63.6

Q ss_pred             HHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           78 SQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ....|++++|.|||+|.+|..+|.+|..+|+ ++.+.|..  .                  +..   +....  ...++ 
T Consensus        10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~--~------------------~s~---~~A~~--~G~~v-   62 (335)
T PRK13403         10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRP--G------------------KSF---EVAKA--DGFEV-   62 (335)
T ss_pred             ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECc--c------------------hhh---HHHHH--cCCEE-
Confidence            4678999999999999999999999999998 46665421  0                  000   00000  11111 


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH---HcCCcEEEEcCCCC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV---RRGLKVLCATGAGA  211 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~---~~~ip~I~~~g~G~  211 (448)
                              .+..+++.. .|+|+.++-+..++..+++-..   +.+.-++.+.|+.-
T Consensus        63 --------~sl~Eaak~-ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni  110 (335)
T PRK13403         63 --------MSVSEAVRT-AQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNI  110 (335)
T ss_pred             --------CCHHHHHhc-CCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECCCcce
Confidence                    135566665 9999999988777665553222   34555777777643

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.39  E-value=0.25  Score=50.02  Aligned_cols=103  Identities=31%  Similarity=0.433  Sum_probs=69.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHH--hhhCCCceEEEEe
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHF--SSIFPECHIDAKV  160 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l--~~inP~v~v~~~~  160 (448)
                      ..+.|.|.|+|+||..+++---.+|.++|.=||-.                   ..|-+.+++.=  .=+||. +..-  
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN-------------------~~Kf~~ak~fGaTe~iNp~-d~~~--  249 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN-------------------PDKFEKAKEFGATEFINPK-DLKK--  249 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC-------------------HHHHHHHHhcCcceecChh-hccc--
Confidence            35899999999999999999999999999987732                   22322222110  013443 1110  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGA  209 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~  209 (448)
                       .+ .+-+.++-.+.+|+-++|+.|.++...-...|++- |+.++-+...
T Consensus       250 -~i-~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~  297 (375)
T KOG0022|consen  250 -PI-QEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAA  297 (375)
T ss_pred             -cH-HHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecC
Confidence             00 11223334456999999999999999999999986 8888775544

>PTZ00117 malate dehydrogenase; Provisional

Probab=94.36  E-value=0.06  Score=54.76  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=33.0

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++.+|.|||+|.+|+.++..|+..|+.+|.|+|-|
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~   38 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI   38 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence            467899999999999999999999998889999975

>PRK08339 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.75  Score=44.77  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=29.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~   41 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRN   41 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67788999987 6899999999999996 58887654

>PRK07063 short chain dehydrogenase; Provisional

Probab=94.30  E-value=0.3  Score=47.04  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=51.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+.++..++..+
T Consensus         4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (260)
T PRK07063          4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLD-------------------AALAERAAAAIARDVAGARVLAV   63 (260)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhccCCceEEEE
Confidence            477889999986 7999999999999997 47776532                   23445555666554445555555


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        64 ~~Dl~~~~~~~~~~~~~~~~~g~id~li~~a   94 (260)
T PRK07063         64 PADVTDAASVAAAVAAAEEAFGPLDVLVNNA   94 (260)
T ss_pred             EccCCCHHHHHHHHHHHHHHhCCCcEEEECC
Confidence            444332 22333322      2366666543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.30  E-value=0.26  Score=54.48  Aligned_cols=94  Identities=11%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|.+|..+++.|...|+ +++++|.|.-                   +++.++    +.  ..+  ++....
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~~----~~--g~~--v~~GDa  451 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVNLMR----KY--GYK--VYYGDA  451 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHHH----hC--CCe--EEEeeC
Confidence            5799999999999999999999998 5899998841                   222221    11  122  222222


Q ss_pred             C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC--CcEEE
Q 013180          164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG--LKVLC  205 (448)
Q Consensus       164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~--ip~I~  205 (448)
                      + ++..++.--.++|.||.++||.+....+...+++++  +++|.
T Consensus       452 t~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        452 TQLELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CCHHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            2 222222222359999999999998888888888763  34554

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=94.29  E-value=0.34  Score=48.81  Aligned_cols=122  Identities=22%  Similarity=0.297  Sum_probs=71.4

Q ss_pred             cEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccC------CccCchHHHHHHHHHhhhCCCceEEE
Q 013180           86 YVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR------ADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        86 ~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~------~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      +|+|. |+|=+||+++..|..+|.. +.++|+    ++|=+|..+...      .|+.-  .+.+.+.+.+..|+.-++.
T Consensus         2 ~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DN----L~~g~~~~v~~~~~~f~~gDi~D--~~~L~~vf~~~~idaViHF   74 (329)
T COG1087           2 KVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDN----LSNGHKIALLKLQFKFYEGDLLD--RALLTAVFEENKIDAVVHF   74 (329)
T ss_pred             eEEEecCcchhHHHHHHHHHHCCCe-EEEEec----CCCCCHHHhhhccCceEEecccc--HHHHHHHHHhcCCCEEEEC
Confidence            57777 7899999999999999965 677674    344444443321      23322  2344455555555544442


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceEEc
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA  221 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip-~I~~~g~G~k~dpt~i~i~  221 (448)
                      -....-.|+...-+.- ||      .|.-.-..|.+.|+++|+. +|.++.+...++|+++-|.
T Consensus        75 Aa~~~VgESv~~Pl~Y-y~------NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~  131 (329)
T COG1087          75 AASISVGESVQNPLKY-YD------NNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPIS  131 (329)
T ss_pred             ccccccchhhhCHHHH-Hh------hchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccC
Confidence            2222122222222211 11      2444556788899988865 6777888888999885443

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.26  E-value=0.19  Score=50.63  Aligned_cols=72  Identities=25%  Similarity=0.272  Sum_probs=48.4

Q ss_pred             EEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC---ceEEEEecc
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE---CHIDAKVLL  162 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~---v~v~~~~~~  162 (448)
                      |.|||+|+||+.+|..|+..|+ .+|.|+|.+                   ..|++..+.-|.+..+.   +++..    
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~----   57 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR----   57 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE----
Confidence            5799999999999999999997 569998864                   23444555556655543   22221    


Q ss_pred             CCccchHHHhcCCCCeEEEccCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                       . .+. +-+.+ +|+||.|...
T Consensus        58 -~-~~~-~~l~~-aDiVIitag~   76 (300)
T cd00300          58 -G-GDY-ADAAD-ADIVVITAGA   76 (300)
T ss_pred             -C-CCH-HHhCC-CCEEEEcCCC
Confidence             1 112 33444 9999988864

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.25  E-value=0.18  Score=50.28  Aligned_cols=32  Identities=28%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|..|+.+|..|++.|. +++++|.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~   35 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS   35 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            579999999999999999999996 69999865

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=94.22  E-value=0.24  Score=53.83  Aligned_cols=128  Identities=13%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHH----HcCC------ceEEEE
Q 013180           63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLL----RSGV------GRLLLV  114 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~La----rsGV------g~i~Li  114 (448)
                      +.++|...+..|..+-|                  ++|++.+|++.|+|+.|.-+|..|+    +.|+      .+|.++
T Consensus       258 iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~v  337 (559)
T PTZ00317        258 LLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLV  337 (559)
T ss_pred             HHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEE
Confidence            44666666777765543                  4789999999999999999999988    4799      899999


Q ss_pred             eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHH
Q 013180          115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA  191 (448)
Q Consensus       115 D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~  191 (448)
                      |.+-+-.++-       .+++-..|...++..    ++.       ......++.+.+.. ++|++|.++.  +.-++..
T Consensus       338 D~~GLl~~~r-------~~~l~~~k~~fa~~~----~~~-------~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~ev  399 (559)
T PTZ00317        338 DSKGLVTTTR-------GDKLAKHKVPFARTD----ISA-------EDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEV  399 (559)
T ss_pred             cCCCeEeCCC-------CccccHHHHHHhccc----ccc-------ccccCCCHHHHHhccCCCEEEEecCCCCCCCHHH
Confidence            9774322211       011334444433321    100       00011345555543 5799999885  4556778


Q ss_pred             HHHHHHHcCCcEEEEcC
Q 013180          192 LLAACVRRGLKVLCATG  208 (448)
Q Consensus       192 l~~~c~~~~ip~I~~~g  208 (448)
                      +-.++.....|+|.+..
T Consensus       400 v~~Ma~~~~rPIIFaLS  416 (559)
T PTZ00317        400 VKTMASNVERPIIFPLS  416 (559)
T ss_pred             HHHHHhcCCCCEEEECC
Confidence            88888888899999874

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=94.21  E-value=0.17  Score=50.19  Aligned_cols=31  Identities=26%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|+|+|.+|+.+|..|+++| .+++++|.+
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g-~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAG-HDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCC-CeEEEEECC
Confidence            6999999999999999999999 479998864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.21  E-value=0.18  Score=51.81  Aligned_cols=102  Identities=21%  Similarity=0.194  Sum_probs=65.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe-c
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV-L  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~-~  161 (448)
                      ...+|+|+|+|.+|--++..+...|..+|.++|.+.                   .|.+.+++....     .+.... .
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~g~-----~~~~~~~~  223 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAGGA-----DVVVNPSE  223 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhCCC-----eEeecCcc
Confidence            334899999999999999999999999999987652                   122333322211     111000 0


Q ss_pred             cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      ........++..+ .+|+||+|+.+..+.....++++..|.-++-+..
T Consensus       224 ~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         224 DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEecc
Confidence            0000011122222 4999999999998888999999988886666543

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=94.19  E-value=0.39  Score=46.27  Aligned_cols=93  Identities=11%  Similarity=0.128  Sum_probs=54.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++.+|.|||+|.+|+.++..|++.|.   .++.+++.          +        ...|.+.+++.    .+ ++  ..
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~----------~--------~~~~~~~~~~~----~~-~~--~~   57 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNR----------S--------NVEKLDQLQAR----YN-VS--TT   57 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECC----------C--------CHHHHHHHHHH----cC-cE--Ee
Confidence            45789999999999999999999873   22333221          0        01233322222    11 22  11


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT  207 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~  207 (448)
                            .+..+.+.+ +|+||.|+-+...+..+.++... .+..+|+.+
T Consensus        58 ------~~~~~~~~~-~DiViiavp~~~~~~v~~~l~~~~~~~~vis~~   99 (245)
T PRK07634         58 ------TDWKQHVTS-VDTIVLAMPPSAHEELLAELSPLLSNQLVVTVA   99 (245)
T ss_pred             ------CChHHHHhc-CCEEEEecCHHHHHHHHHHHHhhccCCEEEEEC
Confidence                  123445554 99999999987776666555422 345566654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.15  E-value=0.18  Score=52.70  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=77.5

Q ss_pred             HHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCC
Q 013180           65 EQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL  124 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL  124 (448)
                      .||.-+|..|..+-|                  ++|++.+|++.|+|..|..++..|...|+.  +|.++|.--+-..+ 
T Consensus       162 lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~-  240 (432)
T COG0281         162 LRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDG-  240 (432)
T ss_pred             HhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCC-
Confidence            455556777865533                  489999999999999999999999999998  99999976432211 


Q ss_pred             cccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHH-HHHHHHHHHHHcCCcE
Q 013180          125 NRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNID-TKVALLAACVRRGLKV  203 (448)
Q Consensus       125 nRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~-~r~~l~~~c~~~~ip~  203 (448)
                       |.-+    +.++.|.+.+.+......   .             .+.+. ++|+.|.|+..-. +...+-+++..   |+
T Consensus       241 -r~~~----~~~~~k~~~a~~~~~~~~---~-------------~~~~~-~adv~iG~S~~G~~t~e~V~~Ma~~---Pi  295 (432)
T COG0281         241 -REDL----TMNQKKYAKAIEDTGERT---L-------------DLALA-GADVLIGVSGVGAFTEEMVKEMAKH---PI  295 (432)
T ss_pred             -Cccc----ccchHHHHHHHhhhcccc---c-------------ccccc-CCCEEEEcCCCCCcCHHHHHHhccC---CE
Confidence             1110    246666665543322211   1             11233 4999999998633 33444455443   99


Q ss_pred             EEEcC
Q 013180          204 LCATG  208 (448)
Q Consensus       204 I~~~g  208 (448)
                      |.++.
T Consensus       296 Ifala  300 (432)
T COG0281         296 IFALA  300 (432)
T ss_pred             EeecC
Confidence            99874

>PRK07831 short chain dehydrogenase; Provisional

Probab=94.15  E-value=0.32  Score=46.98  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=28.5

Q ss_pred             HhhCCcEEEEcC-C-hHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-G-GVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-G-GvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++++|.|. | |+|..+++.|+..|.. +.++|.
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~   50 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDI   50 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeC
Confidence            345688999997 6 8999999999999975 777553

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.11  E-value=0.087  Score=52.25  Aligned_cols=32  Identities=28%  Similarity=0.464  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|.|||+|-+|+.+|..|+++|. +++++|.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~   35 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS   35 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence            479999999999999999999997 78898865

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.07  E-value=0.5  Score=49.73  Aligned_cols=94  Identities=16%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      .+|+|+|+|.+|..+++.|...|. .+.++|.|.-                   +++.+++     ...  +..+.... 
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~~~~~~-----~~~--~~~~~gd~~   53 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RLRRLQD-----RLD--VRTVVGNGS   53 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HHHHHHh-----hcC--EEEEEeCCC
Confidence            379999999999999999999996 5788876521                   1111111     011  22222222 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLC  205 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~  205 (448)
                      +.....+.-..++|.||.|+++......+...|++. +.+.+.
T Consensus        54 ~~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii   96 (453)
T PRK09496         54 SPDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTI   96 (453)
T ss_pred             CHHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence            222233331235999999999888777777778775 554444

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.05  E-value=0.24  Score=54.94  Aligned_cols=89  Identities=20%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|-+|..+++.|...|+ +++++|.|.-                   +++.+++    .  ..++  +....
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~~~~~----~--g~~v--~~GDa  451 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIETLRK----F--GMKV--FYGDA  451 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHHHHHh----c--CCeE--EEEeC
Confidence            5799999999999999999999997 4899998842                   2222221    1  2222  22222


Q ss_pred             C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC
Q 013180          164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG  200 (448)
Q Consensus       164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~  200 (448)
                      + ++...+.--+++|.||.|+||.+....+...++++.
T Consensus       452 t~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~  489 (621)
T PRK03562        452 TRMDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHF  489 (621)
T ss_pred             CCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence            2 222222212359999999999999888888888763

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=94.03  E-value=0.79  Score=43.12  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=29.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+++|+|.|+ |++|..+++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~   38 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSN   38 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            45678999986 89999999999999986 7887665

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=94.03  E-value=0.078  Score=47.10  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec-cCCc
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL-LYDA  165 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~-~~~~  165 (448)
                      |+|+|+|++|+..|..|.++|.. +++++... ..+.++++-+.                  -..++-+...... ....
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~r~~-~~~~~~~~g~~------------------~~~~~~~~~~~~~~~~~~   60 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHD-VTLVSRSP-RLEAIKEQGLT------------------ITGPDGDETVQPPIVISA   60 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCE-EEEEESHH-HHHHHHHHCEE------------------EEETTEEEEEEEEEEESS
T ss_pred             CEEECcCHHHHHHHHHHHHCCCc-eEEEEccc-cHHhhhheeEE------------------EEecccceecccccccCc
Confidence            78999999999999999998865 77766554 22223322211                  0011101111111 1111


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVR  198 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~  198 (448)
                      +  ... .+.+|+||.|+=+.+....+..+...
T Consensus        61 ~--~~~-~~~~D~viv~vKa~~~~~~l~~l~~~   90 (151)
T PF02558_consen   61 P--SAD-AGPYDLVIVAVKAYQLEQALQSLKPY   90 (151)
T ss_dssp             H--GHH-HSTESEEEE-SSGGGHHHHHHHHCTG
T ss_pred             c--hhc-cCCCcEEEEEecccchHHHHHHHhhc
Confidence            1  112 23599999999999988877775443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=94.02  E-value=0.76  Score=50.43  Aligned_cols=111  Identities=19%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-------
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-------  150 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-------  150 (448)
                      .+...++.|+|.|+ |++|..+++.|++.|. ++++++.+.                   .|.+.+.+.+.++       
T Consensus        75 ~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~-------------------ekl~~l~~~l~~~~L~~~Ga  134 (576)
T PLN03209         75 LDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSA-------------------QRAESLVQSVKQMKLDVEGT  134 (576)
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhhhhccccccc
Confidence            33445677888886 9999999999999996 466654431                   1222222322221       


Q ss_pred             CCCceEEEEeccCC-ccchHHHhcCCCCeEEEccCCH---------------HHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          151 FPECHIDAKVLLYD-ASSEEEILSGHPDFVLDCIDNI---------------DTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       151 nP~v~v~~~~~~~~-~~~~~~ll~~~~D~VIda~Dn~---------------~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      .+.-+++.+...+. .+.....+.+ +|+||.|....               ..-..+.++|.+.++ .+|..+..|
T Consensus       135 ~~~~~v~iV~gDLtD~esI~~aLgg-iDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        135 QPVEKLEIVECDLEKPDQIGPALGN-ASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             cccCceEEEEecCCCHHHHHHHhcC-CCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence            11122444433333 3344455654 99999886421               112345677777664 466555444

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.02  E-value=0.44  Score=45.80  Aligned_cols=73  Identities=21%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchH-HHHHHHHHhhhCCCceE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK-ALCLKKHFSSIFPECHI  156 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K-v~~~~~~l~~inP~v~v  156 (448)
                      ++++++|+|.|+ ||+|+++++.|+..|. ++.+++.+.-.  ++.....+...|+..+. ++.+.+.+.+..+.+++
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   80 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPD--DLPEGVEFVAADLTTAEGCAAVARAVLERLGGVDI   80 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhh--hcCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            577899999986 8999999999999997 58888876432  22222223344555432 33333444444333333

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=93.95  E-value=0.25  Score=50.20  Aligned_cols=78  Identities=15%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..+++++|.|||+|.+|..+|+.|...|+ ++..+|...        ..     .                 +.  +...
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~--------~~-----~-----------------~~--~~~~  178 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSR--------KS-----W-----------------PG--VQSF  178 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC--------CC-----C-----------------CC--ceee
Confidence            35889999999999999999999999997 466666421        00     0                 00  1111


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLA  194 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~  194 (448)
                         ....+.++++.. +|+|+.|.. +.+++..+++
T Consensus       179 ---~~~~~l~e~l~~-aDvvv~~lPlt~~T~~li~~  210 (312)
T PRK15469        179 ---AGREELSAFLSQ-TRVLINLLPNTPETVGIINQ  210 (312)
T ss_pred             ---cccccHHHHHhc-CCEEEECCCCCHHHHHHhHH
Confidence               123456777876 999998886 5677777774

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.93  E-value=0.082  Score=53.85  Aligned_cols=36  Identities=22%  Similarity=0.475  Sum_probs=32.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++..||.|||+|.+|+.+|..|+..|...+.|+|-+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~   39 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIV   39 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            566899999999999999999999998679999865

>PRK12862 malic enzyme; Reviewed

Probab=93.93  E-value=0.22  Score=56.44  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ++|++.||++.|+|..|..+++.|...|+.  +|.++|..-+=..+-       .+++...|...+++.    |+     
T Consensus       189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r-------~~~l~~~~~~~a~~~----~~-----  252 (763)
T PRK12862        189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGR-------TELMDPWKARYAQKT----DA-----  252 (763)
T ss_pred             CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCC-------CccccHHHHHHhhhc----cc-----
Confidence            578999999999999999999999999995  999999764422211       011334455544431    22     


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                              .++.+.+.+ +|++|.++. +.=++..+-.+|   ..|+|.+..
T Consensus       253 --------~~l~e~~~~-~~v~iG~s~~g~~~~~~v~~M~---~~piifals  292 (763)
T PRK12862        253 --------RTLAEVIEG-ADVFLGLSAAGVLKPEMVKKMA---PRPLIFALA  292 (763)
T ss_pred             --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhc---cCCEEEeCC
Confidence                    256777776 899998776 233455666666   579998874

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=93.91  E-value=0.11  Score=52.40  Aligned_cols=36  Identities=28%  Similarity=0.400  Sum_probs=32.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+++|+|+|+|++|..++..|.+.|. +++++|.+
T Consensus       149 ~l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~  184 (296)
T PRK08306        149 TIHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK  184 (296)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3578999999999999999999999997 89998776

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.89  E-value=0.19  Score=51.25  Aligned_cols=97  Identities=16%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ++|.|||+|-.|+.+|..++.+|.. ++++|.+.=....+            ..+.....+.+.+..+..  ......+.
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~-V~l~D~~~~~~~~~------------~~~i~~~~~~~~~~~~~~--~~~~~~i~   72 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLD-VVAWDPAPGAEAAL------------RANVANAWPALERQGLAP--GASPARLR   72 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEeCCHHHHHHH------------HHHHHHHHHHHHHcCCCh--hhHHhhce
Confidence            5799999999999999999999954 88988764222111            111111112222111100  00000111


Q ss_pred             -ccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHH
Q 013180          165 -ASSEEEILSGHPDFVLDCID-NIDTKVALLAACV  197 (448)
Q Consensus       165 -~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~  197 (448)
                       ..+.++.+.+ +|+|+.|+- +.+.|..+.+-..
T Consensus        73 ~~~~l~~av~~-aDlViEavpE~l~vK~~lf~~l~  106 (321)
T PRK07066         73 FVATIEACVAD-ADFIQESAPEREALKLELHERIS  106 (321)
T ss_pred             ecCCHHHHhcC-CCEEEECCcCCHHHHHHHHHHHH
Confidence             1134455665 999999985 7778876664443

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.88  E-value=0.12  Score=41.18  Aligned_cols=54  Identities=24%  Similarity=0.216  Sum_probs=39.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      ||+|||.|-+|+++|..|++.|. +++|++...--.           ......=.+.+.+++++.+
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~~~-----------~~~~~~~~~~~~~~l~~~g   54 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDRLL-----------PGFDPDAAKILEEYLRKRG   54 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSSSS-----------TTSSHHHHHHHHHHHHHTT
T ss_pred             CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccchhh-----------hhcCHHHHHHHHHHHHHCC
Confidence            68999999999999999999995 788877543211           2233334566677777764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.88  E-value=0.61  Score=45.61  Aligned_cols=90  Identities=19%  Similarity=0.192  Sum_probs=54.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+|.|||+|.+|+.++..|.++|.  .++.++|.+.                   .+.+.+++.+     .+++      
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~-------------------~~~~~~~~~~-----g~~~------   52 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP-------------------EKRAALAEEY-----GVRA------   52 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH-------------------HHHHHHHHhc-----CCee------
Confidence            479999999999999999999984  3455654321                   1222222211     1111      


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                       . .+..+.+. ++|+||-|+-....+..+..+....+..+|+..
T Consensus        53 -~-~~~~~~~~-~advVil~v~~~~~~~v~~~l~~~~~~~vvs~~   94 (267)
T PRK11880         53 -A-TDNQEAAQ-EADVVVLAVKPQVMEEVLSELKGQLDKLVVSIA   94 (267)
T ss_pred             -c-CChHHHHh-cCCEEEEEcCHHHHHHHHHHHHhhcCCEEEEec
Confidence             1 12234444 499999999777666666554433355566654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=93.84  E-value=0.31  Score=49.24  Aligned_cols=80  Identities=15%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ..+...++|+|+|+|+.|...++.+.. .++.++.+.|.+                   ..|++.+++++.+.++  .+.
T Consensus       120 La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~  178 (304)
T PRK07340        120 LAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE  178 (304)
T ss_pred             hCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE
Confidence            334567899999999999999999975 678888885443                   3577777777765432  222


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHH
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                             .++.++.+.+ +|+||.||-+..
T Consensus       179 -------~~~~~~av~~-aDiVitaT~s~~  200 (304)
T PRK07340        179 -------PLDGEAIPEA-VDLVVTATTSRT  200 (304)
T ss_pred             -------ECCHHHHhhc-CCEEEEccCCCC
Confidence                   1334555654 999999998754

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=93.77  E-value=0.94  Score=46.29  Aligned_cols=161  Identities=24%  Similarity=0.272  Sum_probs=94.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|.+++|.|||+|.+|+.+|+.|...|+. +..+|.-.-..                                  .....
T Consensus       139 el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~~~~~~----------------------------------~~~~~  183 (324)
T COG0111         139 ELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDPYSPRE----------------------------------RAGVD  183 (324)
T ss_pred             cccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECCCCchh----------------------------------hhccc
Confidence            67899999999999999999999999976 44444311000                                  00000


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM  236 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r  236 (448)
                      .....+++++++.. .|+|+..+- +.+|+-.|++.-..   .|.-+|+++ -|.-.|             .+.|.+++.
T Consensus       184 ~~~~~~~Ld~lL~~-sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~a-RG~vVd-------------e~aL~~AL~  248 (324)
T COG0111         184 GVVGVDSLDELLAE-ADILTLHLPLTPETRGLINAEELAKMKPGAILINAA-RGGVVD-------------EDALLAALD  248 (324)
T ss_pred             cceecccHHHHHhh-CCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECC-Ccceec-------------HHHHHHHHH
Confidence            11223457788875 999988775 56778777753322   345566643 343222             445555443


Q ss_pred             HHHhhhcCccCCe-eEEeCCCCCcc--cCCCCCCCCCCCCCCCCCCccCCcccccCCccc----chHHHHHHHHHHHHHH
Q 013180          237 HRLRKDYGIEGGI-PVVFSLEKPKA--KLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG----SIPAIFGMVMASHVVT  309 (448)
Q Consensus       237 ~~l~~~~g~~g~i-~~v~s~e~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg----~~~~i~G~~~A~~vi~  309 (448)
                          .  |-..+. -=||+.|++..  .++.                +|+  +-..|=+|    ....-++-+.+..+.+
T Consensus       249 ----~--G~i~gA~lDVf~~EPl~~~~pL~~----------------~pn--V~~TPHia~~T~ea~~~~~~~~~~~i~~  304 (324)
T COG0111         249 ----S--GKIAGAALDVFEEEPLPADSPLWD----------------LPN--VILTPHIGGSTDEAQERVAEIVAENIVR  304 (324)
T ss_pred             ----c--CCcceEEecCCCCCCCCCCChhhc----------------CCC--eEECCcccccCHHHHHHHHHHHHHHHHH
Confidence                2  322222 23777775432  2221                122  22234444    2356778888899999


Q ss_pred             HHHcCC
Q 013180          310 QLAERQ  315 (448)
Q Consensus       310 ~l~g~~  315 (448)
                      ++.|.+
T Consensus       305 ~l~g~~  310 (324)
T COG0111         305 YLAGGP  310 (324)
T ss_pred             HHcCCC
Confidence            998876

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=93.77  E-value=0.28  Score=50.18  Aligned_cols=36  Identities=31%  Similarity=0.393  Sum_probs=30.9

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ...|++++|.|||+|..|..+|.+|..+|+ ++.+.+
T Consensus        12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~   47 (330)
T PRK05479         12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL   47 (330)
T ss_pred             hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence            456889999999999999999999999998 455544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=93.76  E-value=0.37  Score=51.82  Aligned_cols=35  Identities=29%  Similarity=0.539  Sum_probs=31.4

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|+|+||+|..++..|+..|+ ++.++|.+
T Consensus       330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~  364 (477)
T PRK09310        330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT  364 (477)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567899999999999999999999998 88887654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=93.75  E-value=0.68  Score=46.86  Aligned_cols=95  Identities=15%  Similarity=0.210  Sum_probs=57.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+.+|+|.|+|++|..+++.+...|+.++.++|...                   .|.+.++    ++.-..-+..   
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~-------------------~~~~~a~----~lGa~~vi~~---  221 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSP-------------------RSLSLAR----EMGADKLVNP---  221 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCH-------------------HHHHHHH----HcCCcEEecC---
Confidence            3578999999999999999999999998888876541                   1222221    1111111111   


Q ss_pred             cCCccchHHHh--cCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          162 LYDASSEEEIL--SGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       162 ~~~~~~~~~ll--~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                        ..++..++.  .+.+|+||||+....+-....+..+..|.-++
T Consensus       222 --~~~~~~~~~~~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~  264 (343)
T PRK09880        222 --QNDDLDHYKAEKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQ  264 (343)
T ss_pred             --CcccHHHHhccCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence              111112222  12489999999987665556666666665333

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.74  E-value=0.4  Score=48.87  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=55.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..++++|+|+|+.|...+..|. ..++.+++|++          |.         ..|++.+++++.+..+ +++...  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~----------R~---------~~~a~~~a~~~~~~~g-~~v~~~--  185 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWA----------RD---------SAKAEALALQLSSLLG-IDVTAA--  185 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEEC----------CC---------HHHHHHHHHHHHhhcC-ceEEEe--
Confidence            3568999999999999999997 47889999953          32         2477777777765432 334322  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                          ++.++.+.+ +|+||.||.+.
T Consensus       186 ----~~~~~av~~-aDiVvtaT~s~  205 (326)
T TIGR02992       186 ----TDPRAAMSG-ADIIVTTTPSE  205 (326)
T ss_pred             ----CCHHHHhcc-CCEEEEecCCC
Confidence                334555664 99999999763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=93.70  E-value=0.16  Score=50.40  Aligned_cols=116  Identities=21%  Similarity=0.177  Sum_probs=64.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEE---EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLL---LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~---LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ..||.|||||.+|..++..|..-+...+.   +.|.+.-..    +. +     .+..++-.--+.+....|++-|++-.
T Consensus         2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~----~~-~-----~~~~~~~~~l~~ll~~~~DlVVE~A~   71 (267)
T PRK13301          2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLP----PA-L-----AGRVALLDGLPGLLAWRPDLVVEAAG   71 (267)
T ss_pred             ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHH----HH-h-----hccCcccCCHHHHhhcCCCEEEECCC
Confidence            35899999999999999998664432232   223321000    00 0     01112111123333455666666533


Q ss_pred             ccCCccchHHHhcCCCCeEEEcc---CCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCI---DNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~---Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      ...-.+....++....|+++-.+   .+.+....|.+.|++.+..++-.+|+
T Consensus        72 ~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGA  123 (267)
T PRK13301         72 QQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGA  123 (267)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChH
Confidence            33333445556664588887654   35567778888888877666665544

>PLN02427 UDP-apiose/xylose synthase

Probab=93.70  E-value=0.43  Score=49.22  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++++.++|+|.|+ |-+|+++++.|+..|--+++.+|.
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r   47 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV   47 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence            4567789999985 999999999999985346777774

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.34  Score=51.59  Aligned_cols=38  Identities=18%  Similarity=0.313  Sum_probs=32.6

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +-+.+++|+|+|.|+.|..+|..|...|. .+++.|.+.
T Consensus        10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~   47 (458)
T PRK01710         10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS   47 (458)
T ss_pred             hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            44567899999999999999999999996 688888553

>PLN02240 UDP-glucose 4-epimerase

Probab=93.64  E-value=0.81  Score=46.15  Aligned_cols=33  Identities=33%  Similarity=0.628  Sum_probs=28.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      |++++|+|.|+ |++|+++++.|+..|. +++++|
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~   36 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID   36 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            56789999986 9999999999999995 687776

>PLN02477 glutamate dehydrogenase

Probab=93.63  E-value=0.49  Score=49.90  Aligned_cols=37  Identities=30%  Similarity=0.511  Sum_probs=32.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|.|.||+++|+.|...|..-+.+.|.+
T Consensus       203 ~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~  239 (410)
T PLN02477        203 SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDIT  239 (410)
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCC
Confidence            4778999999999999999999999998766687754

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=93.59  E-value=0.064  Score=53.40  Aligned_cols=34  Identities=35%  Similarity=0.463  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ++|.|||+|-+|+.+|.+|+++|. +++++|.+.=
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~   35 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQE   35 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHH
Confidence            479999999999999999999995 5889887743

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=93.57  E-value=0.25  Score=53.03  Aligned_cols=122  Identities=13%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEec-cC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVL-LY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~-~~  163 (448)
                      .|.|||+|..|+.+|.+|++.|. ++.+.|.+.-....+.....   ..-+..-+...++....+ .|.+-+..... ..
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~~---~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~   76 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEHA---KGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAP   76 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhcc---CCCCceecCCHHHHHhhcCCCCEEEEECCCcHH
Confidence            47899999999999999999997 68888876433322221100   000000111223333332 34443433322 11


Q ss_pred             CccchHHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 DASSEEEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~~~~~~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ..+-.+.+..  .+=|+|||++. ++..-....+.+.+.++.++.+.-.|+
T Consensus        77 v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        77 VDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence            1122223322  12589999986 445545556778899999999887776

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=93.55  E-value=0.41  Score=40.92  Aligned_cols=85  Identities=19%  Similarity=0.307  Sum_probs=46.5

Q ss_pred             cCChHHHHHHHHHHHc----CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCcc
Q 013180           91 GLGGVGSHAAAMLLRS----GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS  166 (448)
Q Consensus        91 G~GGvGs~va~~Lars----GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~  166 (448)
                      |+|.||+.+++.|.+.    ++.-..|.|.+ -         +....            ...... ...+        ..
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~---------~~~~~------------~~~~~~-~~~~--------~~   49 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-M---------LISKD------------WAASFP-DEAF--------TT   49 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-E---------EEETT------------HHHHHT-HSCE--------ES
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-c---------hhhhh------------hhhhcc-cccc--------cC
Confidence            8999999999999977    44545554544 0         11110            111111 1111        12


Q ss_pred             chHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          167 SEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       167 ~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      +.++++. ..+|+||||+..-... .....+.++|+.+|.+.
T Consensus        50 ~~~~~~~~~~~dvvVE~t~~~~~~-~~~~~~L~~G~~VVt~n   90 (117)
T PF03447_consen   50 DLEELIDDPDIDVVVECTSSEAVA-EYYEKALERGKHVVTAN   90 (117)
T ss_dssp             SHHHHHTHTT-SEEEE-SSCHHHH-HHHHHHHHTTCEEEES-
T ss_pred             CHHHHhcCcCCCEEEECCCchHHH-HHHHHHHHCCCeEEEEC
Confidence            3455555 2499999997664444 55567778999999854

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.54  E-value=0.17  Score=53.19  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=32.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+++|+|+|+|.+|..+|..|...|. ++.++|.|.
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp  228 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP  228 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence            679999999999999999999999998 588888765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=93.50  E-value=0.72  Score=46.82  Aligned_cols=35  Identities=31%  Similarity=0.356  Sum_probs=29.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ |.+|+++++.|++.|. +++++|.+
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~   37 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD   37 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence            46789999996 8899999999999995 57776655

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=93.49  E-value=0.62  Score=50.30  Aligned_cols=122  Identities=15%  Similarity=0.104  Sum_probs=71.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCch---HHHHHHHHHhhh-CCCceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP---KALCLKKHFSSI-FPECHIDAKV  160 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~---Kv~~~~~~l~~i-nP~v~v~~~~  160 (448)
                      .+|.+||+|-.|+.+|.+|++.|. ++++.|.+.=....+...    ...-|..   -+..+++....+ .|.+-+....
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~   81 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK   81 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence            479999999999999999999996 588876542111111100    0000211   122233333332 2444444332


Q ss_pred             ccCC-ccchHHHhc--CCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          161 LLYD-ASSEEEILS--GHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       161 ~~~~-~~~~~~ll~--~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ..-. .+-.+.++.  .+=|+||||+.. ++.-..+.+.+.+.|+.++.+.-.|+
T Consensus        82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG  136 (493)
T PLN02350         82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG  136 (493)
T ss_pred             CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence            2110 111122222  135899999886 66777778899999999999887766

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=93.46  E-value=0.23  Score=53.30  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCch--HHHHHHHHHhhh-CCCceEEEEec
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP--KALCLKKHFSSI-FPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~--Kv~~~~~~l~~i-nP~v~v~~~~~  161 (448)
                      ++|.|||+|-.|+.+|.+|++.|. +++++|.+.=....+.....    .-|..  -+..+++.+..+ .|.+-+.....
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~~----~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~   76 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKAK----EGNTRVKGYHTLEELVNSLKKPRKVILLIKA   76 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhhh----hcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence            579999999999999999999997 68898865433222211000    00100  112233444333 34433333221


Q ss_pred             -cCCccchHHHhc--CCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          162 -LYDASSEEEILS--GHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       162 -~~~~~~~~~ll~--~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                       ....+..+.+..  .+-|+|||++.. +..-....+.+.++|+.++.++-.|+
T Consensus        77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG  130 (470)
T PTZ00142         77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG  130 (470)
T ss_pred             hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence             111112222221  135899999875 45555666888899999999887776

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=93.44  E-value=0.1  Score=53.02  Aligned_cols=34  Identities=35%  Similarity=0.614  Sum_probs=30.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~  116 (448)
                      +..||.|||+|.||+.+|..|+..|+- +|.|+|-
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~   39 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI   39 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            356999999999999999999999985 7999875

>PRK12827 short chain dehydrogenase; Provisional

Probab=93.42  E-value=1.5  Score=41.50  Aligned_cols=33  Identities=27%  Similarity=0.565  Sum_probs=27.9

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +++++|+|.| .|++|.++++.|+..|.. +.+++
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~g~~-v~~~~   37 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAADGAD-VIVLD   37 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEc
Confidence            5678899998 589999999999999974 77766

>PLN02214 cinnamoyl-CoA reductase

Probab=93.37  E-value=0.72  Score=46.91  Aligned_cols=105  Identities=15%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +++++|+|.|+ |.+|++++..|+..|. +++.++.+.   ++.              +... ...+....+  +++.+.
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~---~~~--------------~~~~-~~~~~~~~~--~~~~~~   66 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNP---DDP--------------KNTH-LRELEGGKE--RLILCK   66 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCc---hhh--------------hHHH-HHHhhCCCC--cEEEEe
Confidence            56788999998 9999999999999996 466554321   010              0000 111111112  233333


Q ss_pred             ccC-CccchHHHhcCCCCeEEEccCC------------HHHHHHHHHHHHHcCC-cEEEEcC
Q 013180          161 LLY-DASSEEEILSGHPDFVLDCIDN------------IDTKVALLAACVRRGL-KVLCATG  208 (448)
Q Consensus       161 ~~~-~~~~~~~ll~~~~D~VIda~Dn------------~~~r~~l~~~c~~~~i-p~I~~~g  208 (448)
                      ..+ +.+...+.+.+ +|+||.+...            ...-..+.++|++.++ .+|..++
T Consensus        67 ~Dl~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS  127 (342)
T PLN02214         67 ADLQDYEALKAAIDG-CDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS  127 (342)
T ss_pred             cCcCChHHHHHHHhc-CCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence            333 33445566665 8999987631            2223467788888886 4666554

>PLN02494 adenosylhomocysteinase

Probab=93.26  E-value=0.19  Score=53.66  Aligned_cols=36  Identities=31%  Similarity=0.640  Sum_probs=32.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+++|+|+|+|.+|..+|..+...|+ ++.++|.|.
T Consensus       252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp  287 (477)
T PLN02494        252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP  287 (477)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            578999999999999999999999998 688888664

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.25  E-value=0.36  Score=50.11  Aligned_cols=106  Identities=14%  Similarity=0.133  Sum_probs=61.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh--hhCCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS--SIFPEC  154 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~--~inP~v  154 (448)
                      +..+|.|+|+|.-|+.+|..|++.|.      .+++|...|..-              -++.-++.+.+.=.  ..-|.+
T Consensus        10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~--------------~~~~~~~~in~~~~N~~ylp~~   75 (365)
T PTZ00345         10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIV--------------EGEKLSDIINTKHENVKYLPGI   75 (365)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccc--------------cchHHHHHHHhcCCCcccCCCC
Confidence            35689999999999999999999874      466775444210              02222222221100  011333


Q ss_pred             eEEEEeccC--CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH----HcCCcEEEEc
Q 013180          155 HIDAKVLLY--DASSEEEILSGHPDFVLDCIDNIDTKVALLAACV----RRGLKVLCAT  207 (448)
Q Consensus       155 ~v~~~~~~~--~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~----~~~ip~I~~~  207 (448)
                      ++   +..+  + .+..+.+.+ .|+||-|+-+...+..+.+...    ..+.++|+.+
T Consensus        76 ~L---p~ni~~t-sdl~eav~~-aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~a  129 (365)
T PTZ00345         76 KL---PDNIVAV-SDLKEAVED-ADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLT  129 (365)
T ss_pred             cC---CCceEEe-cCHHHHHhc-CCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEe
Confidence            22   1111  1 233455554 9999999999888877766643    2344667643

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=93.24  E-value=0.32  Score=47.19  Aligned_cols=81  Identities=20%  Similarity=0.286  Sum_probs=57.7

Q ss_pred             hhCCcEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +++++++++ ||||+|-..++.|..-|+..+.+.|.-    +|                 -.+...|+++||.+++..+.
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~   61 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK   61 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence            457778777 799999999999999999988885532    12                 22346799999999998877


Q ss_pred             ccCCc-cchHHHh------cCCCCeEEEcc
Q 013180          161 LLYDA-SSEEEIL------SGHPDFVLDCI  183 (448)
Q Consensus       161 ~~~~~-~~~~~ll------~~~~D~VIda~  183 (448)
                      ..++. ...+..+      .+..|++|+..
T Consensus        62 ~DVt~~~~~~~~f~ki~~~fg~iDIlINgA   91 (261)
T KOG4169|consen   62 CDVTNRGDLEAAFDKILATFGTIDILINGA   91 (261)
T ss_pred             eccccHHHHHHHHHHHHHHhCceEEEEccc
Confidence            66543 2222222      13578888654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=93.23  E-value=0.17  Score=49.99  Aligned_cols=33  Identities=15%  Similarity=0.235  Sum_probs=24.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcC--CceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D  117 (448)
                      .+|.|||||.+|..++..|...+  +.-+.++|.+
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~   36 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN   36 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence            37999999999999999998764  3334454544

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=93.23  E-value=0.25  Score=57.14  Aligned_cols=41  Identities=27%  Similarity=0.370  Sum_probs=35.0

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSS  123 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sN  123 (448)
                      -.+++|+|||.|..|-.+|..|++.|.. ++++|...++.-|
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEccccccccc
Confidence            3678999999999999999999999965 9999987655444

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.17  E-value=0.46  Score=48.29  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=29.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..++..+...|+ ++..+|.
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~  204 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR  204 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence            57899999999999999999999998 5777765

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=93.12  E-value=0.37  Score=48.05  Aligned_cols=30  Identities=27%  Similarity=0.447  Sum_probs=25.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|.|+ |-+|+++++.|...|  +++.+|..
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~   32 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG--NLIALDVH   32 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC--CEEEeccc
Confidence            6999987 999999999999888  57777753

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.11  E-value=0.42  Score=50.35  Aligned_cols=35  Identities=29%  Similarity=0.371  Sum_probs=30.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|+|.|++|..+|..|++.|. ++.+.|.+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~   37 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK   37 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            567899999999999999999999996 58887755

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=93.10  E-value=1.2  Score=45.41  Aligned_cols=36  Identities=19%  Similarity=0.150  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++.++|+|.|+ |=+|+++++.|...|. +++.+|..
T Consensus        12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~   48 (348)
T PRK15181         12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF   48 (348)
T ss_pred             cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            566799999985 9999999999999985 67777754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.09  E-value=0.47  Score=50.12  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=31.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+++|+|+|.|+.|..+|..|+..|. ++++.|.+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~   38 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL   38 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            457899999999999999999999996 588888543

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.09  E-value=0.62  Score=44.17  Aligned_cols=35  Identities=29%  Similarity=0.565  Sum_probs=30.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~   38 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLN   38 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67889999998 9999999999999996 57777743

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.05  E-value=0.49  Score=44.93  Aligned_cols=35  Identities=23%  Similarity=0.468  Sum_probs=30.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ |++|.++++.|+..|.. +.+++.+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~   38 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRN   38 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCC
Confidence            67889999986 89999999999999976 8886654

>PRK12861 malic enzyme; Reviewed

Probab=93.05  E-value=0.36  Score=54.51  Aligned_cols=101  Identities=16%  Similarity=0.192  Sum_probs=69.9

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ++|++.||++.|+|..|..+++.|...|+.  +|.++|..-+=..+-.       .++...|...++.    -|+     
T Consensus       185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~-------~~l~~~k~~~a~~----~~~-----  248 (764)
T PRK12861        185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRT-------TLMDPDKERFAQE----TDA-----  248 (764)
T ss_pred             CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCc-------ccCCHHHHHHHhh----cCC-----
Confidence            578899999999999999999999999996  8999997654222110       1133445554433    122     


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                              .++.+.+.+ +|++|.++. +.=++..+-.++.   .|+|.+..
T Consensus       249 --------~~L~eai~~-advliG~S~~g~ft~e~v~~Ma~---~PIIFaLs  288 (764)
T PRK12861        249 --------RTLAEVIGG-ADVFLGLSAGGVLKAEMLKAMAA---RPLILALA  288 (764)
T ss_pred             --------CCHHHHHhc-CCEEEEcCCCCCCCHHHHHHhcc---CCEEEECC
Confidence                    256777776 899998875 2234455666654   79999874

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=93.04  E-value=1  Score=47.03  Aligned_cols=105  Identities=21%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..+|+|+|. |.+|+++++.|...|. ++++++.+.-....             +..    .+.+....+.+++.  ...
T Consensus        60 ~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~-------------~~~----~~~~~~~~~~v~~v--~~D  119 (390)
T PLN02657         60 DVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRG-------------KNG----KEDTKKELPGAEVV--FGD  119 (390)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccc-------------cch----hhHHhhhcCCceEE--Eee
Confidence            457999986 9999999999999996 57766543210000             000    01111123444432  222


Q ss_pred             C-CccchHHHhcC---CCCeEEEccCC------------HHHHHHHHHHHHHcCCc-EEEEcC
Q 013180          163 Y-DASSEEEILSG---HPDFVLDCIDN------------IDTKVALLAACVRRGLK-VLCATG  208 (448)
Q Consensus       163 ~-~~~~~~~ll~~---~~D~VIda~Dn------------~~~r~~l~~~c~~~~ip-~I~~~g  208 (448)
                      + +.+.....+.+   ++|+||.|...            ...-..+.+.|++.++. +|..+.
T Consensus       120 l~d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS  182 (390)
T PLN02657        120 VTDADSLRKVLFSEGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSA  182 (390)
T ss_pred             CCCHHHHHHHHHHhCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEee
Confidence            3 34445555553   48999987632            12223567888888876 555443

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=93.00  E-value=0.38  Score=54.30  Aligned_cols=101  Identities=18%  Similarity=0.194  Sum_probs=69.0

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ++|.+.||++.|+|..|..+++.|...|+.  +|.++|..-+=..+  |     ..++...|...+++    -|+     
T Consensus       181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~--r-----~~~~~~~k~~~a~~----~~~-----  244 (752)
T PRK07232        181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKG--R-----TEGMDEWKAAYAVD----TDA-----  244 (752)
T ss_pred             CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCC--C-----cccccHHHHHHhcc----CCC-----
Confidence            578999999999999999999999999995  99999976432211  1     12234444443332    111     


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                              .++.+.+.+ +|++|.++. +.=++..+-.++.   .|+|.+..
T Consensus       245 --------~~l~~~i~~-~~v~iG~s~~g~~~~~~v~~M~~---~piifals  284 (752)
T PRK07232        245 --------RTLAEAIEG-ADVFLGLSAAGVLTPEMVKSMAD---NPIIFALA  284 (752)
T ss_pred             --------CCHHHHHcC-CCEEEEcCCCCCCCHHHHHHhcc---CCEEEecC
Confidence                    356777776 899998776 2334556666663   79998874

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.00  E-value=0.58  Score=48.02  Aligned_cols=93  Identities=25%  Similarity=0.277  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .++|+|+|+||+|...+++....| -+++.+                   |++..|.+.+++.-..    .   .++.. 
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~-------------------~~~~~K~e~a~~lGAd----~---~i~~~-  218 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAI-------------------TRSEEKLELAKKLGAD----H---VINSS-  218 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEE-------------------eCChHHHHHHHHhCCc----E---EEEcC-
Confidence            689999999999999999999999 556553                   4456677666554322    1   12222 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      +++..+.+-. .+|+||++.- ..+-....+..+..|.-++-+
T Consensus       219 ~~~~~~~~~~-~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG  259 (339)
T COG1064         219 DSDALEAVKE-IADAIIDTVG-PATLEPSLKALRRGGTLVLVG  259 (339)
T ss_pred             CchhhHHhHh-hCcEEEECCC-hhhHHHHHHHHhcCCEEEEEC
Confidence            3333333333 3999999999 666666667777777755543

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.98  E-value=0.37  Score=48.85  Aligned_cols=29  Identities=28%  Similarity=0.548  Sum_probs=25.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      .||+|+|+|++||..+..|+++| ..++++
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~   29 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAG-HDVTLL   29 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence            47999999999999999999999 767763

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=92.95  E-value=0.75  Score=45.44  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .+|+|+|+-|-|..++..|...|..-+..+                 ..+-|....       .+ .+..  ..+...++
T Consensus         1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~-----------------~t~~~~~~~-------~~-~g~~--~v~~g~l~   53 (256)
T TIGR00715         1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTV-----------------TTSEGKHLY-------PI-HQAL--TVHTGALD   53 (256)
T ss_pred             CeEEEEechHHHHHHHHHHHhCCCeEEEEE-----------------ccCCccccc-------cc-cCCc--eEEECCCC
Confidence            379999997789999999999985433221                 111122111       11 1111  23335566


Q ss_pred             ccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEE
Q 013180          165 ASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCA  206 (448)
Q Consensus       165 ~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~  206 (448)
                      .+...+++. .++|+||||+..++...  .+.+.|.+.|+|++--
T Consensus        54 ~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~   98 (256)
T TIGR00715        54 PQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF   98 (256)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence            666656664 35999999999998764  6779999999999985

This enzyme was found to be a monomer by gel filtration.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=92.89  E-value=0.44  Score=48.21  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=56.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +|.|+|+|.+|+.++..|+++| .++++++.+.=....++.+   .-+..   |           ....+.+++      
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~~~~~~~i~~~~~~~~~~~---~-----------~~~~~~i~~------   60 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRNHTTFESINTKRKNLKYLP---T-----------CHLPDNISV------   60 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCC-CeEEEEecCHHHHHHHHHcCCCcccCC---C-----------CcCCCCeEE------
Confidence            6999999999999999999999 4578887653211112211   00000   0           001111111      


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH-H--cCCcEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV-R--RGLKVLC  205 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~-~--~~ip~I~  205 (448)
                       + .+..+.+.+.+|+||-|+-+...+..+.++.. .  .+.++|.
T Consensus        61 -~-~~~~~~~~~~~Dliiiavks~~~~~~l~~l~~~~l~~~~~vv~  104 (326)
T PRK14620         61 -K-SAIDEVLSDNATCIILAVPTQQLRTICQQLQDCHLKKNTPILI  104 (326)
T ss_pred             -e-CCHHHHHhCCCCEEEEEeCHHHHHHHHHHHHHhcCCCCCEEEE
Confidence             1 12223333348999999999888877766543 2  3445555

>PRK05867 short chain dehydrogenase; Provisional

Probab=92.87  E-value=0.62  Score=44.71  Aligned_cols=33  Identities=18%  Similarity=0.481  Sum_probs=28.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++++.++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~   40 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            67889999998 8999999999999997 466654

>PRK09414 glutamate dehydrogenase; Provisional

Probab=92.80  E-value=1.1  Score=47.62  Aligned_cols=36  Identities=28%  Similarity=0.237  Sum_probs=31.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|++++|+|.|.|.||+++|+.|...|..=+.+.|.
T Consensus       229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs  264 (445)
T PRK09414        229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS  264 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence            478999999999999999999999999776666684

>PRK14030 glutamate dehydrogenase; Provisional

Probab=92.79  E-value=0.96  Score=48.15  Aligned_cols=37  Identities=24%  Similarity=0.315  Sum_probs=32.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..=+.+-|.+
T Consensus       225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~  261 (445)
T PRK14030        225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD  261 (445)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4789999999999999999999999998888775644

>PRK06194 hypothetical protein; Provisional

Probab=92.77  E-value=0.47  Score=46.40  Aligned_cols=36  Identities=28%  Similarity=0.461  Sum_probs=29.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|+++++.|++.|. ++.++|.+
T Consensus         3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~   39 (287)
T PRK06194          3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQ   39 (287)
T ss_pred             CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356788999975 8999999999999997 58887654

>PRK05854 short chain dehydrogenase; Provisional

Probab=92.77  E-value=0.53  Score=47.27  Aligned_cols=60  Identities=22%  Similarity=0.336  Sum_probs=40.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.++|.|+ +|+|.++++.|++.|. ++.+++.+                   ..|.+.+.+.+.+.+|..++..+
T Consensus        11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~-------------------~~~~~~~~~~l~~~~~~~~v~~~   70 (313)
T PRK05854         11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRN-------------------RAKGEAAVAAIRTAVPDAKLSLR   70 (313)
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence            356788888875 7899999999999995 67775533                   13445555556555555555544


Q ss_pred             e
Q 013180          160 V  160 (448)
Q Consensus       160 ~  160 (448)
                      .
T Consensus        71 ~   71 (313)
T PRK05854         71 A   71 (313)
T ss_pred             E
Confidence            3

>PLN02206 UDP-glucuronate decarboxylase

Probab=92.74  E-value=0.84  Score=48.53  Aligned_cols=35  Identities=43%  Similarity=0.507  Sum_probs=28.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +-++++|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus       116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~  151 (442)
T PLN02206        116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN  151 (442)
T ss_pred             ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence            345689999985 9999999999999996 4666664

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=92.74  E-value=0.67  Score=51.68  Aligned_cols=34  Identities=35%  Similarity=0.507  Sum_probs=31.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++|+|||+|..|-.+|..|++.|.. ++|+|.+
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~  359 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH  359 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence            578999999999999999999999975 9999865

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=92.68  E-value=0.74  Score=46.68  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~   34 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA   34 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence            579999999999999999999995 58888864

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=92.68  E-value=0.19  Score=46.53  Aligned_cols=91  Identities=21%  Similarity=0.232  Sum_probs=57.3

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ...|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-...                       .....        
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~-----------------------~~~~~--------   78 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEE-----------------------GADEF--------   78 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHH-----------------------HHHHT--------
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhh-----------------------hcccc--------
Confidence            457899999999999999999999999998 6777766532211                       00000        


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEE
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLC  205 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~  205 (448)
                         .+...+.++++.. .|+|+.+.. +.+++..+++...+   .+.-+|+
T Consensus        79 ---~~~~~~l~ell~~-aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN  125 (178)
T PF02826_consen   79 ---GVEYVSLDELLAQ-ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVN  125 (178)
T ss_dssp             ---TEEESSHHHHHHH--SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEE
T ss_pred             ---cceeeehhhhcch-hhhhhhhhccccccceeeeeeeeeccccceEEEe
Confidence               0122356677775 999998876 56677666654433   2334555

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=92.66  E-value=0.19  Score=49.99  Aligned_cols=24  Identities=33%  Similarity=0.473  Sum_probs=21.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS  106 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars  106 (448)
                      +..+|.|||||.+|..++..|...
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~   28 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRG   28 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhc
Confidence            357899999999999999999874

>PRK08291 ectoine utilization protein EutC; Validated

Probab=92.62  E-value=0.74  Score=46.97  Aligned_cols=76  Identities=16%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|+|+|+.|...+..|.. .|+.++++++.+                   ..|++.+++++++..+ +++...   
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~g-~~v~~~---  188 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAELG-IPVTVA---  188 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhccC-ceEEEe---
Confidence            4689999999999999999985 578999995332                   2367777777654332 333322   


Q ss_pred             CCccchHHHhcCCCCeEEEccCCH
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                         ++.++.+.+ +|+||.|+...
T Consensus       189 ---~d~~~al~~-aDiVi~aT~s~  208 (330)
T PRK08291        189 ---RDVHEAVAG-ADIIVTTTPSE  208 (330)
T ss_pred             ---CCHHHHHcc-CCEEEEeeCCC
Confidence               234556664 99999998764

>PRK06181 short chain dehydrogenase; Provisional

Probab=92.58  E-value=0.8  Score=44.06  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=26.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++|+|.|+ |++|..+++.|+..|. +++++|.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r   33 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAAR   33 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            57899988 9999999999999996 6877664

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.53  E-value=1.8  Score=41.02  Aligned_cols=99  Identities=21%  Similarity=0.285  Sum_probs=63.7

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           87 VVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        87 VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      |+|+|+ |.+|+.++..|...|. ++++          +.|..          + ....+.++.  +.+++. .....+.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~----------l~R~~----------~-~~~~~~l~~--~g~~vv-~~d~~~~   55 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRA----------LVRDP----------S-SDRAQQLQA--LGAEVV-EADYDDP   55 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEE----------EESSS----------H-HHHHHHHHH--TTTEEE-ES-TT-H
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEE----------EEecc----------c-hhhhhhhhc--ccceEe-ecccCCH
Confidence            789997 9999999999999764 4665          22221          1 111233333  244543 2233355


Q ss_pred             cchHHHhcCCCCeEEEccCC-----HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          166 SSEEEILSGHPDFVLDCIDN-----IDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn-----~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +.+.+.+.+ .|.|+.++..     .+....+.++|.+.|++.+--+..+.
T Consensus        56 ~~l~~al~g-~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~ss~~~  105 (233)
T PF05368_consen   56 ESLVAALKG-VDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPSSFGA  105 (233)
T ss_dssp             HHHHHHHTT-CSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEESEESS
T ss_pred             HHHHHHHcC-CceEEeecCcchhhhhhhhhhHHHhhhccccceEEEEEecc
Confidence            667777886 9999999983     23345688999999999887655554

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.53  E-value=0.7  Score=48.95  Aligned_cols=90  Identities=24%  Similarity=0.345  Sum_probs=54.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--------C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS--------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars--------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      .-+|.|+|+|.+|+.+++.|...        |  +.-..++|.|.-..    +..     +.                +.
T Consensus         3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~----~~~-----~~----------------~~   57 (426)
T PRK06349          3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD----RGV-----DL----------------PG   57 (426)
T ss_pred             eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc----cCC-----CC----------------cc
Confidence            45899999999999999888543        3  23344556542111    000     00                00


Q ss_pred             ceEEEEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          154 CHIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ..+       . .+.++++. .+.|+|++|+........+...|.++|+.++++
T Consensus        58 ~~~-------~-~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVta  103 (426)
T PRK06349         58 ILL-------T-TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTA  103 (426)
T ss_pred             cce-------e-CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEc
Confidence            000       1 23445553 247888888876666667777777888888874

>CHL00194 ycf39 Ycf39; Provisional

Probab=92.51  E-value=1.3  Score=44.31  Aligned_cols=96  Identities=17%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      +|+|.|+ |-+|++++..|...|. +++.++.+.                   .+..    .+..  +.+  +.+...+ 
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~-------------------~~~~----~l~~--~~v--~~v~~Dl~   53 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNL-------------------RKAS----FLKE--WGA--ELVYGDLS   53 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcCh-------------------HHhh----hHhh--cCC--EEEECCCC
Confidence            6999995 9999999999999995 577754331                   0111    1111  123  3333333 


Q ss_pred             CccchHHHhcCCCCeEEEccCC------------HHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDN------------IDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn------------~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      +++.....+.+ +|+||.+...            ......+.++|++.++ .+|..++.|
T Consensus        54 d~~~l~~al~g-~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~  112 (317)
T CHL00194         54 LPETLPPSFKG-VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN  112 (317)
T ss_pred             CHHHHHHHHCC-CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            34455666776 8999987532            1222467789999886 466655543

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=92.48  E-value=0.2  Score=49.13  Aligned_cols=36  Identities=36%  Similarity=0.550  Sum_probs=31.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++.++|+|-|.|.||+++|+.|...|..-+.+-|.
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~   64 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDS   64 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEES
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence            588999999999999999999999999766665443

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.46  E-value=0.76  Score=46.81  Aligned_cols=34  Identities=41%  Similarity=0.630  Sum_probs=29.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~  209 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI  209 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3689999999999999999988999887877654

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=92.46  E-value=1.8  Score=46.26  Aligned_cols=37  Identities=38%  Similarity=0.469  Sum_probs=34.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus       234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~  270 (454)
T PTZ00079        234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD  270 (454)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4788999999999999999999999998888898877

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.46  E-value=1.2  Score=44.59  Aligned_cols=35  Identities=29%  Similarity=0.329  Sum_probs=30.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~  197 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS  197 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            47899999999999999999999998877776543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02572 UDP-sulfoquinovose synthase

Probab=92.43  E-value=1.8  Score=45.95  Aligned_cols=37  Identities=30%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++++++|+|.|+ |.+|+++++.|+..|. +++++|..
T Consensus        43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~   80 (442)
T PLN02572         43 SSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL   80 (442)
T ss_pred             ccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            3556678999985 9999999999999995 68888853

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.42  E-value=0.81  Score=45.45  Aligned_cols=33  Identities=30%  Similarity=0.374  Sum_probs=27.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|.| +|.+|+++++.|...|. ++++++.+
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~   37 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD   37 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            57899998 59999999999999996 46665554

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.40  E-value=0.17  Score=51.29  Aligned_cols=31  Identities=39%  Similarity=0.610  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~  116 (448)
                      ||.|||+|.||+.+|..|+..|+ ++|.|+|-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di   32 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            68999999999999999999997 67999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02740 Alcohol dehydrogenase-like

Probab=92.39  E-value=1  Score=46.37  Aligned_cols=35  Identities=34%  Similarity=0.548  Sum_probs=30.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~  232 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN  232 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence            36789999999999999999999998888887654

>PRK05872 short chain dehydrogenase; Provisional

Probab=92.37  E-value=0.89  Score=45.12  Aligned_cols=36  Identities=39%  Similarity=0.645  Sum_probs=30.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|..+++.|+..|. ++.+++.+
T Consensus         6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   42 (296)
T PRK05872          6 SLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLE   42 (296)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367889999986 8999999999999997 57776643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.36  E-value=0.86  Score=53.07  Aligned_cols=97  Identities=11%  Similarity=0.056  Sum_probs=57.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~~~~  161 (448)
                      .+++|+|||+|..|-.+|..|++.|. +++|+|...    .+.-..-|.-.+.-.+| +++.+++..+. -.+++..-..
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~~----~~GG~l~yGIP~~rlp~-~vi~~~i~~l~~~Gv~f~~n~~  378 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAFH----DLGGVLRYGIPEFRLPN-QLIDDVVEKIKLLGGRFVKNFV  378 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeCC----CCCceEEccCCCCcChH-HHHHHHHHHHHhhcCeEEEeEE
Confidence            48999999999999999999999997 599998642    22222222222222333 33444433332 1344433221


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      .-..-..+++....||.||-|+..
T Consensus       379 vG~dit~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        379 VGKTATLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             eccEEeHHHhccccCCEEEEeCCC
Confidence            111123455554359999999875

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=92.26  E-value=0.56  Score=41.70  Aligned_cols=59  Identities=20%  Similarity=0.182  Sum_probs=40.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +.|+|.| .+|+|..++..|++.|-.++.+++.+                 .-..+.+.+.+.+.+.+  .++..+...
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~-----------------~~~~~~~~l~~~l~~~~--~~~~~~~~D   60 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRS-----------------EDSEGAQELIQELKAPG--AKITFIECD   60 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS-----------------CHHHHHHHHHHHHHHTT--SEEEEEESE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec-----------------ccccccccccccccccc--ccccccccc
Confidence            3578886 78999999999999998898886655                 11234555556666444  556555443

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.25  E-value=0.68  Score=47.28  Aligned_cols=102  Identities=22%  Similarity=0.280  Sum_probs=62.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .+|.|+|.|+-|+.+|..|++.| ..+++...|.-....+|..-- .                .+.-|.+.+  .+...-
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~-N----------------~~yLp~i~l--p~~l~a   61 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRE-N----------------PKYLPGILL--PPNLKA   61 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcC-CeeEEEecCHHHHHHHHhcCc-C----------------ccccCCccC--Cccccc
Confidence            58999999999999999999999 667776554322222222100 0                001122111  111111


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHH--HHHcCCcEEEEc
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAA--CVRRGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~--c~~~~ip~I~~~  207 (448)
                      ..+..+.+.+ +|+||-++.+...+..+.++  ....+.+++++.
T Consensus        62 t~Dl~~a~~~-ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          62 TTDLAEALDG-ADIIVIAVPSQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             ccCHHHHHhc-CCEEEEECChHHHHHHHHHHhhhccCCCeEEEEe
Confidence            2345566665 99999999998888776664  345667777754

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=92.20  E-value=0.88  Score=43.75  Aligned_cols=36  Identities=31%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++++++|+|.|+ |++|+++++.|+..|. ++.++|.
T Consensus         8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r   44 (259)
T PRK08213          8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSAR   44 (259)
T ss_pred             hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            3477899999985 9999999999999997 5777654

>PRK07478 short chain dehydrogenase; Provisional

Probab=92.19  E-value=0.82  Score=43.80  Aligned_cols=35  Identities=23%  Similarity=0.560  Sum_probs=29.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++.++|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         3 ~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r   38 (254)
T PRK07478          3 RLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGAR   38 (254)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            356788999986 7999999999999997 5777554

>PRK07680 late competence protein ComER; Validated

Probab=92.14  E-value=1.8  Score=42.68  Aligned_cols=90  Identities=22%  Similarity=0.392  Sum_probs=52.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +|.|||+|.+|+.++..|.++|.   ..+.++|.+.                   .+++.+    .+..+.+++.     
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~-------------------~~~~~~----~~~~~g~~~~-----   53 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTP-------------------AKAYHI----KERYPGIHVA-----   53 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCH-------------------HHHHHH----HHHcCCeEEE-----
Confidence            59999999999999999999985   4566654431                   122222    2222323221     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~~  207 (448)
                         .+..+.+. ++|+||-|+-.......+.+....  .+..+|+.+
T Consensus        54 ---~~~~~~~~-~aDiVilav~p~~~~~vl~~l~~~l~~~~~iis~~   96 (273)
T PRK07680         54 ---KTIEEVIS-QSDLIFICVKPLDIYPLLQKLAPHLTDEHCLVSIT   96 (273)
T ss_pred             ---CCHHHHHH-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEEC
Confidence               12234444 499999999766655555544322  244455544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=92.14  E-value=0.18  Score=50.73  Aligned_cols=33  Identities=30%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|+|+|+|++|+.++-+|+++|. .+++++..
T Consensus         2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~   34 (305)
T PRK05708          2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD   34 (305)
T ss_pred             CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence            4579999999999999999999995 68998874

>PRK06949 short chain dehydrogenase; Provisional

Probab=92.11  E-value=0.9  Score=43.43  Aligned_cols=34  Identities=26%  Similarity=0.551  Sum_probs=28.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++|+|.|+ |++|+++++.|++.|. ++.+++.
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r   41 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASR   41 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            66899999986 9999999999999997 4776544

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.10  E-value=0.34  Score=49.09  Aligned_cols=95  Identities=21%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc--------cCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS--------VSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~--------~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      ++|.|||+|-.|+-+|..++.+|+ .+++.|...-.        ..+|.|+.     .-|+-+-+.....+..+.|..++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~~~~~~~~~~~i~~~l~k~~-----~~g~l~~~~~~~~l~~i~~~~~~   77 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGY-DVVLKDISPEALERALAYIEKNLEKLV-----EKGKLTEEEADAALARITPTTDL   77 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCC-ceEEEeCCHHHHHHHHHHHHHHHHHHH-----hcCCCChhhHHHHHhhccccCch
Confidence            689999999999999999999664 48898877222        11222221     12444445555555555554332


Q ss_pred             EEEeccCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180          157 DAKVLLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR  199 (448)
Q Consensus       157 ~~~~~~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~  199 (448)
                      .             -+.+ +|+||.++ -|.+.|..+.+-.-.+
T Consensus        78 ~-------------~l~~-~DlVIEAv~E~levK~~vf~~l~~~  107 (307)
T COG1250          78 A-------------ALKD-ADLVIEAVVEDLELKKQVFAELEAL  107 (307)
T ss_pred             h-------------Hhcc-CCEEEEeccccHHHHHHHHHHHHhh
Confidence            2             2333 99999887 4788887666544433

>PRK05875 short chain dehydrogenase; Provisional

Probab=92.07  E-value=0.96  Score=43.92  Aligned_cols=36  Identities=25%  Similarity=0.401  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ |++|+++++.|+..|. ++.+++.+
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~   40 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRN   40 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            367899999997 8999999999999997 57776543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.07  E-value=0.53  Score=44.94  Aligned_cols=95  Identities=18%  Similarity=0.163  Sum_probs=54.1

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC--CceEEEEecc
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP--ECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP--~v~v~~~~~~  162 (448)
                      +|.||| +|.+|+.++..|++.| .++.++|.+                   ..|++.+.+.......  .+.+....  
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~-------------------~~~~~~l~~~~~~~~~~~g~~~~~~~--   59 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD-------------------LEKAEEAAAKALEELGHGGSDIKVTG--   59 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC-------------------HHHHHHHHHHHHhhccccCCCceEEE--
Confidence            699997 8999999999999999 567775543                   1223322222211111  01111110  


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~  206 (448)
                         .+..+.+. ++|+||-|+-.......+.++... .+..+|+.
T Consensus        60 ---~~~~ea~~-~aDvVilavp~~~~~~~l~~l~~~l~~~vvI~~  100 (219)
T TIGR01915        60 ---ADNAEAAK-RADVVILAVPWDHVLKTLESLRDELSGKLVISP  100 (219)
T ss_pred             ---eChHHHHh-cCCEEEEECCHHHHHHHHHHHHHhccCCEEEEe
Confidence               01233444 399999999887776666555322 34445554

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK09186 flagellin modification protein A; Provisional

Probab=92.06  E-value=0.87  Score=43.46  Aligned_cols=33  Identities=24%  Similarity=0.465  Sum_probs=27.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +++++|+|.|+ ||+|.++++.|++.|.. +.+++
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~g~~-v~~~~   35 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEAGGI-VIAAD   35 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence            45788999987 79999999999999964 66654

>PRK06138 short chain dehydrogenase; Provisional

Probab=92.04  E-value=0.9  Score=43.18  Aligned_cols=34  Identities=29%  Similarity=0.636  Sum_probs=28.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |++++++|.|+ |++|+.+++.|+..|. ++.+++.
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r   37 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADR   37 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecC
Confidence            57889999987 8999999999999995 5777654

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=92.03  E-value=0.39  Score=42.37  Aligned_cols=94  Identities=23%  Similarity=0.245  Sum_probs=50.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ...+|.|||+|-||..++..|.++|.. |.-+         .+|.             ...++++.+.-+...+.     
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~-v~~v---------~srs-------------~~sa~~a~~~~~~~~~~-----   60 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHE-VVGV---------YSRS-------------PASAERAAAFIGAGAIL-----   60 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSE-EEEE---------SSCH-------------H-HHHHHHC--TT---------
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCe-EEEE---------EeCC-------------ccccccccccccccccc-----
Confidence            456899999999999999999999964 3321         1111             22334444444443332     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH----cCCcEEEEcCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR----RGLKVLCATGA  209 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~----~~ip~I~~~g~  209 (448)
                          +..+.+. ..|+||-|+-+-.......+.+..    .+.-+++++|+
T Consensus        61 ----~~~~~~~-~aDlv~iavpDdaI~~va~~La~~~~~~~g~iVvHtSGa  106 (127)
T PF10727_consen   61 ----DLEEILR-DADLVFIAVPDDAIAEVAEQLAQYGAWRPGQIVVHTSGA  106 (127)
T ss_dssp             -----TTGGGC-C-SEEEE-S-CCHHHHHHHHHHCC--S-TT-EEEES-SS
T ss_pred             ----ccccccc-cCCEEEEEechHHHHHHHHHHHHhccCCCCcEEEECCCC
Confidence                1234444 499999998665555555555533    56677887765

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PLN02852 ferredoxin-NADP+ reductase

Probab=92.02  E-value=0.9  Score=49.05  Aligned_cols=96  Identities=22%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHH--cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh--CCCceEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLR--SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDA  158 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lar--sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i--nP~v~v~~  158 (448)
                      ..++|+|||.|..|.++|..|++  .| .+++|+|... .+-.+.|.....  |--..|  .+.+.+.++  ++.+++..
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g-~~Vtv~E~~p-~pgGlvr~gvaP--~~~~~k--~v~~~~~~~~~~~~v~~~~   98 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDG-ARVDIIERLP-TPFGLVRSGVAP--DHPETK--NVTNQFSRVATDDRVSFFG   98 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCC-CeEEEEecCC-CCcceEeeccCC--CcchhH--HHHHHHHHHHHHCCeEEEc
Confidence            35689999999999999999997  56 4799999776 355566643321  111222  222222221  13344322


Q ss_pred             EeccCCc-cchHHHhcCCCCeEEEccCCH
Q 013180          159 KVLLYDA-SSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~~~~D~VIda~Dn~  186 (448)
                      - ..+.. -+.+++.. .||.||-|+...
T Consensus        99 n-v~vg~dvtl~~L~~-~yDaVIlAtGa~  125 (491)
T PLN02852         99 N-VTLGRDVSLSELRD-LYHVVVLAYGAE  125 (491)
T ss_pred             C-EEECccccHHHHhh-hCCEEEEecCCC
Confidence            1 11222 23455555 499999888753

>PRK05866 short chain dehydrogenase; Provisional

Probab=92.01  E-value=0.87  Score=45.26  Aligned_cols=34  Identities=26%  Similarity=0.527  Sum_probs=28.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R   72 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVAR   72 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEEC
Confidence            56788999986 9999999999999996 5777654

>PRK12829 short chain dehydrogenase; Provisional

Probab=91.98  E-value=0.7  Score=44.30  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=32.0

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...+++++|+|.|+ |++|+.+++.|+..|.. +.+++.+
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~r~   44 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCDVS   44 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCC
Confidence            44578899999987 89999999999999975 8887743

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=91.93  E-value=0.87  Score=45.08  Aligned_cols=96  Identities=18%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHH-cCCceEEEEe-CCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLR-SGVGRLLLVD-FDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~Lar-sGVg~i~LiD-~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .||.|+| +|..|..++..+.. .++.=+.++| .+.-.   ..       .|.|.         +....+ ..+..+  
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~---~~-------~~~~~---------~~~~~~-~gv~~~--   59 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSL---QG-------TDAGE---------LAGIGK-VGVPVT--   59 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cC-------CCHHH---------hcCcCc-CCceee--
Confidence            3799999 59999999999986 5666666666 32110   00       01111         111111 011111  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                          .+.+++ ...+|+||||+ +++.-..+...|.++|+|++.+..
T Consensus        60 ----~d~~~l-~~~~DvVIdfT-~p~~~~~~~~~al~~g~~vVigtt  100 (266)
T TIGR00036        60 ----DDLEAV-ETDPDVLIDFT-TPEGVLNHLKFALEHGVRLVVGTT  100 (266)
T ss_pred             ----CCHHHh-cCCCCEEEECC-ChHHHHHHHHHHHHCCCCEEEECC
Confidence                123334 23488888888 667777778888888888887653

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=91.90  E-value=1.3  Score=42.55  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++.|+|.|. |++|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~   35 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADIN   35 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467888877 6999999999999996 67887744

>PRK12320 hypothetical protein; Provisional

Probab=91.84  E-value=1.3  Score=49.88  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=56.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|+|.| +|-+|++++..|...|. +++.+|...-..                            .++.++  .+...+.
T Consensus         2 kILVTGAaGFIGs~La~~Ll~~G~-~Vi~ldr~~~~~----------------------------~~~~ve--~v~~Dl~   50 (699)
T PRK12320          2 QILVTDATGAVGRSVTRQLIAAGH-TVSGIAQHPHDA----------------------------LDPRVD--YVCASLR   50 (699)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEEeCChhhc----------------------------ccCCce--EEEccCC
Confidence            699999 69999999999999995 677777421100                            012222  2222222


Q ss_pred             ccchHHHhcCCCCeEEEccC---------CHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          165 ASSEEEILSGHPDFVLDCID---------NIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~D---------n~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      .....+.+.+ +|+||.+..         |...-..+.+.|++.++.+|..++.
T Consensus        51 d~~l~~al~~-~D~VIHLAa~~~~~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~  103 (699)
T PRK12320         51 NPVLQELAGE-ADAVIHLAPVDTSAPGGVGITGLAHVANAAARAGARLLFVSQA  103 (699)
T ss_pred             CHHHHHHhcC-CCEEEEcCccCccchhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            2223334443 777776653         2233345778899999988886654

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=91.84  E-value=1.9  Score=48.04  Aligned_cols=38  Identities=24%  Similarity=0.390  Sum_probs=29.3

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..-++++|+|.|+ |-+|+++++.|...|=-+++.+|.+
T Consensus       311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~  349 (660)
T PRK08125        311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG  349 (660)
T ss_pred             hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence            3456788999985 9999999999998642367777653

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=91.81  E-value=0.66  Score=47.54  Aligned_cols=85  Identities=21%  Similarity=0.313  Sum_probs=53.3

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..+.+++|.|+|+|++|+.+|+.|-..| ..|.- .         +|+-.       .+  +...++..+          
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y-~---------~r~~~-------~~--~~~~~~~~~----------  207 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY-H---------SRTQL-------PP--EEAYEYYAE----------  207 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee-e---------cccCC-------ch--hhHHHhccc----------
Confidence            5789999999999999999999999866 33333 1         12111       11  111111111          


Q ss_pred             eccCCccchHHHhcCCCCeEE-EccCCHHHHHHHHH-HHHHcC
Q 013180          160 VLLYDASSEEEILSGHPDFVL-DCIDNIDTKVALLA-ACVRRG  200 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VI-da~Dn~~~r~~l~~-~c~~~~  200 (448)
                           ....++++.. .|+|+ .|-.+.+++..+|+ .+.+.+
T Consensus       208 -----~~d~~~~~~~-sD~ivv~~pLt~~T~~liNk~~~~~mk  244 (336)
T KOG0069|consen  208 -----FVDIEELLAN-SDVIVVNCPLTKETRHLINKKFIEKMK  244 (336)
T ss_pred             -----ccCHHHHHhh-CCEEEEecCCCHHHHHHhhHHHHHhcC
Confidence                 2345667664 88665 56678999999995 444433

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.80  E-value=1.7  Score=43.06  Aligned_cols=90  Identities=19%  Similarity=0.270  Sum_probs=55.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +|.|||+|.+|+.++..|.+.|.   .++.++|.+.-                  .|.+.+    ....+.+++      
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~------------------~~~~~l----~~~~~~~~~------   54 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKN------------------EHFNQL----YDKYPTVEL------   54 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcH------------------HHHHHH----HHHcCCeEE------
Confidence            69999999999999999999983   46666655320                  111111    122222221      


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~  206 (448)
                       . .+..+.+. ++|+||-|+-....+..+.++..  ..+..+|+.
T Consensus        55 -~-~~~~e~~~-~aDvVilavpp~~~~~vl~~l~~~l~~~~~ivS~   97 (277)
T PRK06928         55 -A-DNEAEIFT-KCDHSFICVPPLAVLPLLKDCAPVLTPDRHVVSI   97 (277)
T ss_pred             -e-CCHHHHHh-hCCEEEEecCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence             1 12234444 49999999987776666655532  245666764

>PRK06139 short chain dehydrogenase; Provisional

Probab=91.70  E-value=0.82  Score=46.54  Aligned_cols=35  Identities=31%  Similarity=0.554  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++++.|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus         4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R   39 (330)
T PRK06139          4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR   39 (330)
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            467889999998 89999999999999974 777654

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=91.68  E-value=0.66  Score=45.97  Aligned_cols=31  Identities=32%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+|.| +|-+|+++++.|+..|...+.++|..
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence            67776 59999999999999998778888754

>PRK12939 short chain dehydrogenase; Provisional

Probab=91.65  E-value=0.99  Score=42.77  Aligned_cols=34  Identities=26%  Similarity=0.466  Sum_probs=28.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      .+++++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus         4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~   38 (250)
T PRK12939          4 NLAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND   38 (250)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence            356789999986 89999999999999964 55543

>PRK06125 short chain dehydrogenase; Provisional

Probab=91.62  E-value=1.3  Score=42.68  Aligned_cols=35  Identities=34%  Similarity=0.561  Sum_probs=30.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~   40 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARD   40 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            67889999998 7999999999999998 78887654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=91.61  E-value=1  Score=49.28  Aligned_cols=34  Identities=26%  Similarity=0.534  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+|+|+|+|.+|..+++.|...|. .+.+||.|.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~  450 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR  450 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence            5799999999999999999999996 589999883

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=91.59  E-value=0.28  Score=50.08  Aligned_cols=43  Identities=28%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR  126 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnR  126 (448)
                      ...+|+|||.|-+|..+|..|++.|. +++++|.+.+...+-.|
T Consensus         3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~   45 (387)
T COG0665           3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGR   45 (387)
T ss_pred             CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhc
Confidence            46789999999999999999999999 99999988886544333

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=91.57  E-value=0.97  Score=43.25  Aligned_cols=36  Identities=31%  Similarity=0.581  Sum_probs=30.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ |++|+.+++.|+..|. ++.+++.+
T Consensus         4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~   40 (262)
T PRK13394          4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLN   40 (262)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence            466789999988 9999999999999997 57776543

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=91.48  E-value=0.32  Score=50.47  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=35.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRH  127 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq  127 (448)
                      ...|+|||+|-+|+.+|..|++. |..+++|+|.+.+-...-.|+
T Consensus        30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~   74 (407)
T TIGR01373        30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN   74 (407)
T ss_pred             cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence            45799999999999999999985 877899999987654433333

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=91.47  E-value=0.25  Score=50.13  Aligned_cols=34  Identities=38%  Similarity=0.598  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      ..||.|||+|.||+.+|..|+..|.. +|.|+|-+
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~   37 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV   37 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            35899999999999999999999975 69998753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=91.46  E-value=0.89  Score=46.82  Aligned_cols=103  Identities=14%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-------ceEEEEeCCccccCCCcccccccCCcc-CchHHHHHHHHHh--hhCCCce
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-------GRLLLVDFDQVSVSSLNRHAVATRADV-GTPKALCLKKHFS--SIFPECH  155 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-------g~i~LiD~D~V~~sNLnRq~l~~~~dv-G~~Kv~~~~~~l~--~inP~v~  155 (448)
                      +|.|+|+|..|+.+|..|+..|.       .+++|...+.               ++ +..=++.+.+.-.  ..-|.++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~---------------~~~~~~~~~~in~~~~n~~ylpgi~   65 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE---------------EIEGRNLTEIINTTHENVKYLPGIK   65 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc---------------ccCCHHHHHHHHhcCCCccccCCCc
Confidence            58999999999999999999873       4666654421               11 1111111111100  0012211


Q ss_pred             EEEEeccCC-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHH--HHcCCcEEEEc
Q 013180          156 IDAKVLLYD-ASSEEEILSGHPDFVLDCIDNIDTKVALLAAC--VRRGLKVLCAT  207 (448)
Q Consensus       156 v~~~~~~~~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c--~~~~ip~I~~~  207 (448)
                      +   +..+. ..+..+.+.+ .|+||-|+-+...+..+.++.  .+.+.++|+..
T Consensus        66 L---p~~i~at~dl~eal~~-ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~t  116 (342)
T TIGR03376        66 L---PANLVAVPDLVEAAKG-ADILVFVIPHQFLEGICKQLKGHVKPNARAISCI  116 (342)
T ss_pred             C---CCCeEEECCHHHHHhc-CCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEe
Confidence            1   11110 1234566665 999999999988877666553  24566787753

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=91.45  E-value=1.3  Score=43.32  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=51.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +|.|||+|-+|+.++..|.+.|..  .+.+.|          |         ...|++.+.++    .+.+++  .    
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~----------r---------~~~~~~~l~~~----~~~~~~--~----   52 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP----------R---------NAQIAARLAER----FPKVRI--A----   52 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEEC----------C---------CHHHHHHHHHH----cCCceE--e----
Confidence            699999999999999999999842  223322          1         12233333322    232222  1    


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                        .+..++... .|+||-|+-+......+.......+.-+|+..
T Consensus        53 --~~~~~~~~~-aDvVilav~p~~~~~vl~~l~~~~~~~vis~~   93 (258)
T PRK06476         53 --KDNQAVVDR-SDVVFLAVRPQIAEEVLRALRFRPGQTVISVI   93 (258)
T ss_pred             --CCHHHHHHh-CCEEEEEeCHHHHHHHHHHhccCCCCEEEEEC
Confidence              123344444 89999999865554444443223455566643

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=91.41  E-value=0.23  Score=50.38  Aligned_cols=33  Identities=48%  Similarity=0.765  Sum_probs=30.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      .||.|+|+|.||+.+|..|+.-+++ ++.|+|-.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~   34 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN   34 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence            4799999999999999999999999 99999865

>PRK06223 malate dehydrogenase; Reviewed

Probab=91.39  E-value=0.28  Score=49.26  Aligned_cols=32  Identities=31%  Similarity=0.574  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .||.|||+|.+|+.+|..|+..|.+++.|+|-
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~   34 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI   34 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence            58999999999999999999998669999987

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.38  E-value=0.9  Score=46.01  Aligned_cols=32  Identities=28%  Similarity=0.331  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|+|+|..|+.++..|++.|. +++++|.+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~   36 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR   36 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            479999999999999999999995 58887765

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=91.36  E-value=0.28  Score=49.58  Aligned_cols=32  Identities=41%  Similarity=0.637  Sum_probs=29.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      +|.|||+|.+|+.+|..|++.|+ .++.|+|.+
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~   34 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN   34 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            69999999999999999999996 789999964

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=91.33  E-value=1.2  Score=43.80  Aligned_cols=95  Identities=22%  Similarity=0.330  Sum_probs=66.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      ++|+|+|--+=|-.++..|...|.  +.+              ...  .+.|.       +.+....+.+  ..+...+ 
T Consensus         1 m~ILvlgGTtE~r~la~~L~~~g~--v~~--------------sv~--t~~g~-------~~~~~~~~~~--~v~~G~lg   53 (249)
T PF02571_consen    1 MKILVLGGTTEGRKLAERLAEAGY--VIV--------------SVA--TSYGG-------ELLKPELPGL--EVRVGRLG   53 (249)
T ss_pred             CEEEEEechHHHHHHHHHHHhcCC--EEE--------------EEE--hhhhH-------hhhccccCCc--eEEECCCC
Confidence            579999999999999999999997  332              011  11121       1111222333  3455667 


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~  206 (448)
                      +.+.+.+++. .++++|||++..++...  .+.+.|.+.|+|++--
T Consensus        54 ~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~   99 (249)
T PF02571_consen   54 DEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF   99 (249)
T ss_pred             CHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence            7777777774 36999999999998765  5678999999999974

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=91.33  E-value=0.62  Score=46.09  Aligned_cols=22  Identities=27%  Similarity=0.536  Sum_probs=20.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS  106 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars  106 (448)
                      .||.|+|||.+|..+++.|...
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~   23 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHD   23 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhC
Confidence            4899999999999999999876

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=91.33  E-value=1.2  Score=44.67  Aligned_cols=111  Identities=17%  Similarity=0.125  Sum_probs=66.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      +|.+||+|-+|+.++.+|++.|. +++++|.+.    +.  ..+.   +.|...+....+-..  ..++-+.+...   .
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~--~~~~---~~g~~~~~s~~~~~~--~advVi~~v~~---~   66 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VA--DELL---SLGAVSVETARQVTE--ASDIIFIMVPD---T   66 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hH--HHHH---HcCCeecCCHHHHHh--cCCEEEEeCCC---h
Confidence            59999999999999999999996 677887653    11  1111   223322222222221  22333333221   1


Q ss_pred             cchHHHh-------c--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          166 SSEEEIL-------S--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       166 ~~~~~ll-------~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ....+.+       .  .+-.+||||+. ++.+...+.+.+.++|..++++--.|+
T Consensus        67 ~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg  122 (292)
T PRK15059         67 PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGG  122 (292)
T ss_pred             HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence            1122221       1  11358888875 567777888999999999999765553

>PRK09291 short chain dehydrogenase; Provisional

Probab=91.30  E-value=4.3  Score=38.69  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=46.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +++|+|.|+ ||+|..+++.|+..|.. +.+.+.+                   ..+.+.+.+...+..+.+.+  +...
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~-v~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~--~~~D   59 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHN-VIAGVQI-------------------APQVTALRAEAARRGLALRV--EKLD   59 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCcceE--EEee
Confidence            457899987 89999999999999964 4444332                   11233344444444443333  3222


Q ss_pred             C-CccchHHHhcCCCCeEEEccC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D  184 (448)
                      + +.+.....+...+|+||.|..
T Consensus        60 ~~~~~~~~~~~~~~id~vi~~ag   82 (257)
T PRK09291         60 LTDAIDRAQAAEWDVDVLLNNAG   82 (257)
T ss_pred             CCCHHHHHHHhcCCCCEEEECCC
Confidence            3 233344444445999998753

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=91.28  E-value=0.9  Score=45.17  Aligned_cols=32  Identities=31%  Similarity=0.417  Sum_probs=28.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|.|||+|-+|+.++..|++.|. +++++|.+.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence            58999999999999999999995 688887653

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.16  E-value=1.2  Score=47.78  Aligned_cols=35  Identities=37%  Similarity=0.558  Sum_probs=31.0

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|+|+|+.|..+|..|.+.|. +++..|..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   39 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR   39 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence            467899999999999999999999997 68888864

>PRK14982 acyl-ACP reductase; Provisional

Probab=91.11  E-value=0.28  Score=50.43  Aligned_cols=37  Identities=38%  Similarity=0.536  Sum_probs=32.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHH-cCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D  117 (448)
                      .|++++|+|+|+ |.+|+.++++|+. .|+.++.+++.+
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~  190 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQ  190 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCC
Confidence            588999999999 8999999999985 589999996643

>PRK06128 oxidoreductase; Provisional

Probab=91.11  E-value=1.5  Score=43.52  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=29.7

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +.+|++++|+|.|+ ||+|..+++.|++.|.. +.+.+
T Consensus        50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~i~~   86 (300)
T PRK06128         50 FGRLQGRKALITGADSGIGRATAIAFAREGAD-IALNY   86 (300)
T ss_pred             ccccCCCEEEEecCCCcHHHHHHHHHHHcCCE-EEEEe
Confidence            45688999999986 89999999999999974 55543

>PLN02602 lactate dehydrogenase

Probab=91.11  E-value=0.29  Score=50.53  Aligned_cols=32  Identities=38%  Similarity=0.589  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~  116 (448)
                      .||.|||+|.||+.+|..|+..|+ .+|.|+|-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi   70 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV   70 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            699999999999999999999997 57999886

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=91.08  E-value=1.1  Score=43.77  Aligned_cols=30  Identities=17%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR-VVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence            5899985 9999999999999985 5777664

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=91.04  E-value=1.5  Score=45.14  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=28.4

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++++|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r   53 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAEGH-YIIASDW   53 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence            4588999987 9999999999999985 6787774

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=90.96  E-value=1.4  Score=45.07  Aligned_cols=33  Identities=39%  Similarity=0.658  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~  224 (371)
T cd08281         192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL  224 (371)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence            578999999999999999888999988877763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=90.92  E-value=1.6  Score=47.79  Aligned_cols=35  Identities=34%  Similarity=0.411  Sum_probs=31.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~  170 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP  170 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            57899999999999999999999998 599998553

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=90.91  E-value=1.6  Score=48.70  Aligned_cols=35  Identities=34%  Similarity=0.471  Sum_probs=31.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..++|+|||.|..|-.+|..|++.|. +++++|...
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~  343 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHP  343 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCC
Confidence            57999999999999999999999998 599988654

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=90.91  E-value=2.3  Score=42.99  Aligned_cols=32  Identities=19%  Similarity=0.331  Sum_probs=26.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++|+|.|+ |.+|+++++.|...|...+.++|.
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~   34 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence            47999986 889999999999999776767664

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=90.82  E-value=2.9  Score=40.31  Aligned_cols=76  Identities=16%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchH-HHHHHHHHhhhCCCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPK-ALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~K-v~~~~~~l~~inP~v~v~~  158 (448)
                      .|+++.|+|.|+ ||+|..+++.|+..|. ++.++|.+.-....-  ++.+...|+..+. ++.+.+.+.+..+.+++-.
T Consensus         6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171          6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQHE--NYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccccC--ceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            467889999985 8999999999999996 577777654322211  1222334665543 2334444444444444433


Q ss_pred             E
Q 013180          159 K  159 (448)
Q Consensus       159 ~  159 (448)
                      +
T Consensus        83 ~   83 (266)
T PRK06171         83 N   83 (266)
T ss_pred             E
Confidence            3

>PLN02253 xanthoxin dehydrogenase

Probab=90.80  E-value=1.4  Score=43.01  Aligned_cols=35  Identities=23%  Similarity=0.542  Sum_probs=28.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++++++++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~   50 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDL   50 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeC
Confidence            466788999975 7999999999999996 5777664

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=90.79  E-value=0.88  Score=45.24  Aligned_cols=32  Identities=34%  Similarity=0.477  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++.+|++.|. ++.++|.+
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~   34 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN   34 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999996 47777765

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=90.77  E-value=1.2  Score=46.29  Aligned_cols=32  Identities=34%  Similarity=0.509  Sum_probs=28.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|+||| +|.+|+.+|..|...|. .++++|.+
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~  131 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD  131 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence            6899998 99999999999999994 58888864

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=90.72  E-value=0.97  Score=46.50  Aligned_cols=99  Identities=22%  Similarity=0.256  Sum_probs=57.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+|.|+|+ |.+|.+++..|...-.-++. +++.+.               ..|+.        +.+.+|+++... ...
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk~--------~~~~~~~l~~~~-~~~   56 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGKP--------VSEVHPHLRGLV-DLN   56 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCCC--------hHHhCccccccC-Cce
Confidence            37999999 99999999999966333444 545441               11221        111223221100 011


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      +...+.+++.. ++|+||.|+.+-..+....+ +.+.|+.+|+-++.
T Consensus        57 ~~~~~~~~~~~-~~DvVf~alP~~~s~~~~~~-~~~~G~~VIDlS~~  101 (346)
T TIGR01850        57 LEPIDEEEIAE-DADVVFLALPHGVSAELAPE-LLAAGVKVIDLSAD  101 (346)
T ss_pred             eecCCHHHhhc-CCCEEEECCCchHHHHHHHH-HHhCCCEEEeCChh
Confidence            12122334444 49999999998766655554 45689999996654

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=90.66  E-value=0.65  Score=46.65  Aligned_cols=34  Identities=26%  Similarity=0.493  Sum_probs=30.3

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .|++++|+|||.|. +|..++.+|...|. ++++++
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~  189 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILH  189 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            48899999999999 99999999999984 677765

>PLN02780 ketoreductase/ oxidoreductase

Probab=90.63  E-value=1.3  Score=44.75  Aligned_cols=60  Identities=28%  Similarity=0.437  Sum_probs=41.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++.++|.|+ ||+|.++|+.|++.|. ++.+++.+.                   .|.+.+++.+.+.++..++..+...
T Consensus        53 g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~-------------------~~l~~~~~~l~~~~~~~~~~~~~~D  112 (320)
T PLN02780         53 GSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP-------------------DKLKDVSDSIQSKYSKTQIKTVVVD  112 (320)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH-------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence            567999986 7999999999999997 588876431                   2445555666665555555544433


Q ss_pred             C
Q 013180          163 Y  163 (448)
Q Consensus       163 ~  163 (448)
                      +
T Consensus       113 l  113 (320)
T PLN02780        113 F  113 (320)
T ss_pred             C
Confidence            3

>PLN00016 RNA-binding protein; Provisional

Probab=90.63  E-value=1.7  Score=44.73  Aligned_cols=115  Identities=17%  Similarity=0.175  Sum_probs=65.4

Q ss_pred             HHHHhhCCcEEEE----cC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-C
Q 013180           78 SQQKVSGSYVVVI----GL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-F  151 (448)
Q Consensus        78 ~q~kL~~~~VlVV----G~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-n  151 (448)
                      .-.....++|+|+    |+ |-+|+++++.|...|. ++++++.+.-....+.-..           .    .++.++ .
T Consensus        46 ~~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~-----------~----~~~~~l~~  109 (378)
T PLN00016         46 AAAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEP-----------F----SRFSELSS  109 (378)
T ss_pred             hhcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCc-----------h----hhhhHhhh
Confidence            3445566889999    65 8899999999999995 6788776532111110000           0    001111 1


Q ss_pred             CCceEEEEeccCCccchHHHhc-CCCCeEEEccC-CHHHHHHHHHHHHHcCC-cEEEEcCCCCc
Q 013180          152 PECHIDAKVLLYDASSEEEILS-GHPDFVLDCID-NIDTKVALLAACVRRGL-KVLCATGAGAR  212 (448)
Q Consensus       152 P~v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~D-n~~~r~~l~~~c~~~~i-p~I~~~g~G~k  212 (448)
                      +.++  .+...+  .+...++. .++|+||++.. +...-..+.++|.+.|+ .+|..++.+..
T Consensus       110 ~~v~--~v~~D~--~d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vy  169 (378)
T PLN00016        110 AGVK--TVWGDP--ADVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVY  169 (378)
T ss_pred             cCce--EEEecH--HHHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhc
Confidence            1222  222222  12333332 24999999864 34445567889998887 57776655543

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=90.60  E-value=0.35  Score=49.26  Aligned_cols=35  Identities=43%  Similarity=0.512  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus         3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~   37 (376)
T PRK11259          3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP   37 (376)
T ss_pred             cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence            4579999999999999999999996 6999998765

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=90.60  E-value=1.6  Score=46.68  Aligned_cols=34  Identities=38%  Similarity=0.604  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++|+|||.|..|-.+|..|++.|.. ++++|.+
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~-V~i~e~~  173 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQ-VVVFDRH  173 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCe-EEEEecC
Confidence            568999999999999999999999975 8898865

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=90.58  E-value=0.35  Score=40.95  Aligned_cols=88  Identities=23%  Similarity=0.318  Sum_probs=57.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||.|||+|..|..-+..+.+.+  +.-..++|.+                   ..+++.+++..    . +.  .+    
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~-------------------~~~~~~~~~~~----~-~~--~~----   51 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPD-------------------PERAEAFAEKY----G-IP--VY----   51 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHHHT----T-SE--EE----
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCC-------------------HHHHHHHHHHh----c-cc--ch----
Confidence            7999999999999999999883  3222344443                   23333332222    1 11  22    


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        .+.++++. .++|+|+.|+.+ .....+...|.++|++++.-
T Consensus        52 --~~~~~ll~~~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~~E   92 (120)
T PF01408_consen   52 --TDLEELLADEDVDAVIIATPP-SSHAEIAKKALEAGKHVLVE   92 (120)
T ss_dssp             --SSHHHHHHHTTESEEEEESSG-GGHHHHHHHHHHTTSEEEEE
T ss_pred             --hHHHHHHHhhcCCEEEEecCC-cchHHHHHHHHHcCCEEEEE
Confidence              12455654 359999999988 55778888888899988874

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK07825 short chain dehydrogenase; Provisional

Probab=90.55  E-value=1.1  Score=43.61  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=29.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~   38 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLD   38 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECC
Confidence            45678999987 89999999999999975 7776644

>PRK09135 pteridine reductase; Provisional

Probab=90.54  E-value=1.6  Score=41.19  Aligned_cols=33  Identities=18%  Similarity=0.227  Sum_probs=26.6

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++|+|.|+ |++|+++++.|++.|.. +.++|.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~-v~~~~r   38 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYR-VAIHYH   38 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcC
Confidence            4578999986 89999999999999974 555443

>PRK07035 short chain dehydrogenase; Provisional

Probab=90.53  E-value=1.7  Score=41.45  Aligned_cols=36  Identities=22%  Similarity=0.489  Sum_probs=30.1

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++++.|+|.| .||+|.++++.|++.|. ++.++|.+
T Consensus         5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~   41 (252)
T PRK07035          5 DLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRK   41 (252)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            36788899997 57999999999999997 68887653

>PRK00811 spermidine synthase; Provisional

Probab=90.48  E-value=1.3  Score=44.33  Aligned_cols=35  Identities=29%  Similarity=0.505  Sum_probs=27.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..++|+++|+|+ |+.+...|...++.++++||-|.
T Consensus        76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~  110 (283)
T PRK00811         76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE  110 (283)
T ss_pred             CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH
Confidence            467999999986 55555556556899999998874

>PRK13018 cell division protein FtsZ; Provisional

Probab=90.47  E-value=1.5  Score=45.88  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCcccc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSV  121 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~  121 (448)
                      ...+.+|.|||+||-|+.++.+|.+.|+.  ++..++.|.-.+
T Consensus        25 ~~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~q~L   67 (378)
T PRK13018         25 DFGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDAQHL   67 (378)
T ss_pred             ccCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHH
Confidence            35678999999999999999999999976  567778887333

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=90.47  E-value=2.3  Score=40.44  Aligned_cols=91  Identities=15%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHH--HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLL--RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~La--rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+|+|+|+|.+|..++..+.  ..|+.-+.++|.|.   +...+.       ++                ...+     
T Consensus        84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~---~~~~~~-------i~----------------g~~v-----  132 (213)
T PRK05472         84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDP---EKIGTK-------IG----------------GIPV-----  132 (213)
T ss_pred             CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECCh---hhcCCE-------eC----------------CeEE-----
Confidence            468999999999999998743  45777777888762   111111       00                0111     


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                       ...++..+++. .++|.|+.|+.+... ..+.+.|.+.|+..|...
T Consensus       133 -~~~~~l~~li~~~~iD~ViIa~P~~~~-~~i~~~l~~~Gi~~il~~  177 (213)
T PRK05472        133 -YHIDELEEVVKENDIEIGILTVPAEAA-QEVADRLVEAGIKGILNF  177 (213)
T ss_pred             -cCHHHHHHHHHHCCCCEEEEeCCchhH-HHHHHHHHHcCCCEEeec
Confidence             01123444443 248999999877554 466788889998777754

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=90.38  E-value=1.8  Score=42.88  Aligned_cols=91  Identities=13%  Similarity=0.234  Sum_probs=54.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ..+|.+||+|..|+.++..|...|+   .++.++|          |+.        ..|.+.+++.    . .+++.   
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~----------r~~--------~~~~~~l~~~----~-g~~~~---   56 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN----------RSN--------ETRLQELHQK----Y-GVKGT---   56 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC----------CCC--------HHHHHHHHHh----c-CceEe---
Confidence            4589999999999999999999983   2333322          210        1122222221    1 12221   


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCA  206 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~  206 (448)
                           .+..+... +.|+||-|+-+......+..+..  ..+..+|+.
T Consensus        57 -----~~~~e~~~-~aDvVilav~p~~~~~vl~~l~~~~~~~~liIs~   98 (279)
T PRK07679         57 -----HNKKELLT-DANILFLAMKPKDVAEALIPFKEYIHNNQLIISL   98 (279)
T ss_pred             -----CCHHHHHh-cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence                 12234444 48999999998887777766543  234556664

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=90.38  E-value=2.3  Score=45.19  Aligned_cols=34  Identities=32%  Similarity=0.391  Sum_probs=28.1

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..+|+|.|. |-+|+++++.|...|. +++.+|.+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~  153 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF  153 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3468999985 8999999999999985 57777754

>TIGR00065 ftsZ cell division protein FtsZ

Probab=90.38  E-value=1.2  Score=45.95  Aligned_cols=46  Identities=26%  Similarity=0.442  Sum_probs=35.5

Q ss_pred             HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceE--EEEeCCccccC
Q 013180           77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRL--LLVDFDQVSVS  122 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i--~LiD~D~V~~s  122 (448)
                      +.++-..+.+|.|||+||-|+.++..|.+.|+..+  ..+|.|.-.+.
T Consensus        10 ~~~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~   57 (349)
T TIGR00065        10 ELIQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLK   57 (349)
T ss_pred             hhcCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHh
Confidence            33444456789999999999999999999998655  45788864443

This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=90.37  E-value=4.8  Score=40.10  Aligned_cols=33  Identities=30%  Similarity=0.341  Sum_probs=26.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|.|+ |++|++++..|+..|. ++.+++.|
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~   38 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD   38 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            578999985 9999999999999996 46555444

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=90.37  E-value=2.2  Score=44.73  Aligned_cols=41  Identities=44%  Similarity=0.523  Sum_probs=34.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH  127 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq  127 (448)
                      +|.|||+|-+|..+|..|+..|. +++++|.|.-....|+..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~g   42 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNKG   42 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhcC
Confidence            69999999999999999999996 589999876655556654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK06940 short chain dehydrogenase; Provisional

Probab=90.36  E-value=1.7  Score=42.53  Aligned_cols=32  Identities=41%  Similarity=0.706  Sum_probs=26.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++.++|.|+||+|.++++.|+ .| .++.++|.+
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G-~~Vv~~~r~   33 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AG-KKVLLADYN   33 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CC-CEEEEEeCC
Confidence            467889999999999999996 78 467776653

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=90.31  E-value=0.44  Score=47.36  Aligned_cols=35  Identities=31%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV  121 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~  121 (448)
                      .|+|||+|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~   35 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS   35 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence            48999999999999999999998 899999996643

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05855 short chain dehydrogenase; Validated

Probab=90.29  E-value=2.7  Score=45.10  Aligned_cols=38  Identities=32%  Similarity=0.536  Sum_probs=32.0

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+..+++.+++|+|+ ||+|.++++.|+..|.. +.+++.
T Consensus       309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r  347 (582)
T PRK05855        309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDI  347 (582)
T ss_pred             ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            345678899999986 99999999999999985 777664

>PRK07814 short chain dehydrogenase; Provisional

Probab=90.28  E-value=1.9  Score=41.76  Aligned_cols=35  Identities=26%  Similarity=0.465  Sum_probs=29.7

Q ss_pred             hhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++.|+|.|.+ |+|.++++.|+..|. ++.++|.+
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~   43 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAART   43 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            567889999875 799999999999998 78887654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.27  E-value=1.5  Score=46.12  Aligned_cols=35  Identities=37%  Similarity=0.448  Sum_probs=30.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.++|+|+|.|+.|..+|..|.+.|. +++.+|.+.
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~-~V~g~D~~~   36 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGV-YVIGVDKSL   36 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            45789999999999999999999996 688888653

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=90.26  E-value=1.4  Score=43.33  Aligned_cols=32  Identities=38%  Similarity=0.520  Sum_probs=28.1

Q ss_pred             EEEEcC-ChHHHHHHHHHHHcC--C-ceEEEEeCCc
Q 013180           87 VVVIGL-GGVGSHAAAMLLRSG--V-GRLLLVDFDQ  118 (448)
Q Consensus        87 VlVVG~-GGvGs~va~~LarsG--V-g~i~LiD~D~  118 (448)
                      |.|||+ |.+|+.++..|+..|  . .+|.|+|-+.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~   36 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE   36 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence            579999 999999999999998  4 6899998664

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.25  E-value=1.3  Score=41.84  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.| .|++|..+++.|+..|. ++.+++.+
T Consensus         4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~   40 (239)
T PRK07666          4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLART   40 (239)
T ss_pred             cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            45678899997 46999999999999998 78887754

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=90.23  E-value=0.47  Score=51.37  Aligned_cols=33  Identities=33%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -++|.|||+|..|+.+|.+|+++|. .++++|.+
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~   37 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR   37 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            4679999999999999999999995 48888765

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06172 short chain dehydrogenase; Provisional

Probab=90.21  E-value=2  Score=41.06  Aligned_cols=35  Identities=31%  Similarity=0.558  Sum_probs=29.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~   40 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRD   40 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            56789999986 7999999999999996 57776543

>PRK07326 short chain dehydrogenase; Provisional

Probab=90.19  E-value=2  Score=40.48  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=28.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+++|+|.|+ |++|+.+++.|+..|.. +.+++.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~-V~~~~r   38 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYK-VAITAR   38 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCE-EEEeeC
Confidence            45688999986 89999999999999974 777554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.17  E-value=2.6  Score=43.07  Aligned_cols=101  Identities=25%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..++|+|.|+|.+|-.....+-..|..+|.++|-..                   +|.+.+++ +-     .++......
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~-------------------~Rle~Ak~-~G-----a~~~~~~~~  223 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVA-------------------NRLELAKK-FG-----ATVTDPSSH  223 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCH-------------------HHHHHHHH-hC-----CeEEeeccc
Confidence            478999999999999999888899999999977552                   33344443 21     111111111


Q ss_pred             C-CccchHHH----hc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          163 Y-DASSEEEI----LS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       163 ~-~~~~~~~l----l~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      . +.+...+.    +. ..+|++|||+.--.+-..-...++..|.-++-.+|
T Consensus       224 ~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g  275 (354)
T KOG0024|consen  224 KSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMG  275 (354)
T ss_pred             cccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccC
Confidence            1 11111122    22 25999999999877777777788888884444443

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=90.16  E-value=2.3  Score=41.98  Aligned_cols=31  Identities=32%  Similarity=0.395  Sum_probs=26.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|.|+ |.+|+++++.|+..|. +++.+|..
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~   33 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP   33 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence            6899985 9999999999999995 68888764

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.14  E-value=0.25  Score=55.76  Aligned_cols=100  Identities=21%  Similarity=0.294  Sum_probs=57.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++|.|||+|-.|+.+|..++++|. .++|+|.+.=.+..--..   .+-..-.-|+-..+...+.+.++.+      .. 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~-  385 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP------TL-  385 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE------eC-
Confidence            579999999999999999999996 699999764332210000   0000001122222222222222221      11 


Q ss_pred             cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180          162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR  199 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~  199 (448)
                           +.+. +. ++|+||.|+ .+.+.|..+..-..+.
T Consensus       386 -----~~~~-~~-~aDlViEav~E~l~~K~~vf~~l~~~  417 (715)
T PRK11730        386 -----DYAG-FE-RVDVVVEAVVENPKVKAAVLAEVEQK  417 (715)
T ss_pred             -----CHHH-hc-CCCEEEecccCcHHHHHHHHHHHHhh
Confidence                 1222 34 499999997 5788888776555443

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=90.12  E-value=1.2  Score=47.02  Aligned_cols=96  Identities=22%  Similarity=0.274  Sum_probs=64.5

Q ss_pred             cEEEEcCChHHH-HHHHHHHH----cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           86 YVVVIGLGGVGS-HAAAMLLR----SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        86 ~VlVVG~GGvGs-~va~~Lar----sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ||.|||+|++-+ .+...|+.    .++++|.|+|-|.  ...|+.-            ...+++.+.+.++.++|+...
T Consensus         2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~v------------~~~~~~~~~~~~~~~~v~~t~   67 (419)
T cd05296           2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEIV------------GALAKRMVKKAGLPIKVHLTT   67 (419)
T ss_pred             EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHHH------------HHHHHHHHHhhCCCeEEEEeC
Confidence            799999999866 45555554    4789999999885  3333321            134556666777777777643


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC--CHHHHHHHHHHHHHcCCc
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID--NIDTKVALLAACVRRGLK  202 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D--n~~~r~~l~~~c~~~~ip  202 (448)
                            +..+.+.+ .|+||.++-  ..+.+..-.++..++|+-
T Consensus        68 ------d~~~al~g-adfVi~~~~vg~~~~r~~de~i~~~~Gi~  104 (419)
T cd05296          68 ------DRREALEG-ADFVFTQIRVGGLEARALDERIPLKHGVI  104 (419)
T ss_pred             ------CHHHHhCC-CCEEEEEEeeCCcchhhhhhhhHHHcCCc
Confidence                  24556666 999998874  344555555677777764

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PLN02827 Alcohol dehydrogenase-like

Probab=90.10  E-value=1.9  Score=44.44  Aligned_cols=34  Identities=38%  Similarity=0.527  Sum_probs=29.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|.|+|++|..+++.+...|+..+..+|.
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~  226 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDI  226 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            3789999999999999999888899887877664

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=90.09  E-value=1.9  Score=41.21  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=30.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+++|+|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~   44 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRN   44 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCC
Confidence            67899999976 8999999999999997 68887765

>PRK06179 short chain dehydrogenase; Provisional

Probab=90.06  E-value=2.6  Score=40.70  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=28.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++.|+|.|+ ||+|.++++.|+..|.. +++++.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~-V~~~~r~~   38 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYR-VFGTSRNP   38 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCh
Confidence            457888875 89999999999999965 88887764

>PLN03139 formate dehydrogenase; Provisional

Probab=89.97  E-value=1.2  Score=46.70  Aligned_cols=81  Identities=16%  Similarity=0.071  Sum_probs=53.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|+. +..+|......                   +..    .+.+    +.. 
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~~~~~~-------------------~~~----~~~g----~~~-  245 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDRLKMDP-------------------ELE----KETG----AKF-  245 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECCCCcch-------------------hhH----hhcC----cee-
Confidence            368999999999999999999999999975 66666431100                   000    0010    111 


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAA  195 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~  195 (448)
                           .++.++++.. +|+|+.+.- +.+++..+++-
T Consensus       246 -----~~~l~ell~~-sDvV~l~lPlt~~T~~li~~~  276 (386)
T PLN03139        246 -----EEDLDAMLPK-CDVVVINTPLTEKTRGMFNKE  276 (386)
T ss_pred             -----cCCHHHHHhh-CCEEEEeCCCCHHHHHHhCHH
Confidence                 1246677765 998887765 66777777653

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.96  E-value=1.8  Score=43.32  Aligned_cols=36  Identities=33%  Similarity=0.500  Sum_probs=29.4

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..|+++.++|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~   44 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV   44 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence            3567889999986 7899999999999997 4666554

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=89.93  E-value=2.1  Score=42.01  Aligned_cols=85  Identities=18%  Similarity=0.098  Sum_probs=53.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .+.+|.|||+|-+|+.++..|.++|+   .++.+.|.+.-.              .+                   +.. 
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~--------------~~-------------------~~~-   47 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN--------------TP-------------------FVY-   47 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc--------------CC-------------------eEE-
Confidence            35689999999999999999999984   236665543210              00                   011 


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT  207 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~  207 (448)
                          . .+..+... ++|+||-|+.....+..+.+.... ....+|+..
T Consensus        48 ----~-~~~~~~~~-~~D~Vilavkp~~~~~vl~~i~~~l~~~~iIS~~   90 (260)
T PTZ00431         48 ----L-QSNEELAK-TCDIIVLAVKPDLAGKVLLEIKPYLGSKLLISIC   90 (260)
T ss_pred             ----e-CChHHHHH-hCCEEEEEeCHHHHHHHHHHHHhhccCCEEEEEe
Confidence                1 11223344 499999999888887777765432 234555533

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=89.92  E-value=2.3  Score=45.14  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=31.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~  165 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL  165 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            356799999999999999999999996 69999975

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=89.92  E-value=1.6  Score=44.75  Aligned_cols=102  Identities=18%  Similarity=0.163  Sum_probs=57.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .+|.|+|+|..|+.++..|++.|  +++++..+.-....++..-. .....+.        . ..+.+.  +..     +
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~~~~~~~i~~~~~-~~~~l~~--------~-~~l~~~--i~~-----t   68 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRSAETADDINDNHR-NSRYLGN--------D-VVLSDT--LRA-----T   68 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCCHHHHHHHHhcCC-CcccCCC--------C-cccCCC--eEE-----E
Confidence            67999999999999999999998  46665444322222221100 0001110        0 001111  111     1


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEEc
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~~  207 (448)
                       .+..+.+.+ .|+||-|+-+...+..+.++...  .+.++|+..
T Consensus        69 -~d~~~a~~~-aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~  111 (341)
T PRK12439         69 -TDFAEAANC-ADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLV  111 (341)
T ss_pred             -CCHHHHHhc-CCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEE
Confidence             122334444 89999999988888777666543  344566643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=89.91  E-value=0.43  Score=49.54  Aligned_cols=33  Identities=30%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~   34 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR   34 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence            589999999999999999999995 799999886

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=89.90  E-value=2.1  Score=42.16  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=24.9

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |+|.| +|.+|++++..|...|...+.++|.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~   31 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDN   31 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence            56776 6999999999999999767777764

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=89.89  E-value=0.27  Score=55.46  Aligned_cols=33  Identities=24%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-.|+.+|..++ ++|+ .++++|.+.
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence            67999999999999999999 8895 589999764

>PLN02650 dihydroflavonol-4-reductase

Probab=89.88  E-value=4.7  Score=40.82  Aligned_cols=33  Identities=30%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|.|+ |.+|+++++.|+..|. ++++++.+
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~   38 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD   38 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence            568999986 9999999999999986 46665544

>PRK12367 short chain dehydrogenase; Provisional

Probab=89.86  E-value=0.59  Score=45.40  Aligned_cols=40  Identities=15%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .|.++++++++|.|+ ||+|.++++.|+..|. ++.++|.+.
T Consensus         8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~   48 (245)
T PRK12367          8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK   48 (245)
T ss_pred             hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence            588999999999987 7999999999999996 577777653

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=89.84  E-value=3.4  Score=40.45  Aligned_cols=31  Identities=23%  Similarity=0.369  Sum_probs=25.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~  116 (448)
                      +|+|.|. |.+|+++++.|...|- -+++++|.
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~   33 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK   33 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence            5889986 9999999999999873 46777654

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.84  E-value=0.66  Score=49.89  Aligned_cols=33  Identities=36%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++|+|+|+|..|-.++..|...|. ++++.|.
T Consensus        11 ~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~   43 (488)
T PRK03369         11 PGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDD   43 (488)
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            57899999999999999999999995 6788774

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=89.78  E-value=3.6  Score=41.50  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=26.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |.+|+++++.|+..|. ++.++|..
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~   33 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR   33 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence            47889886 8899999999999996 57776643

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=89.77  E-value=4.7  Score=38.77  Aligned_cols=33  Identities=27%  Similarity=0.395  Sum_probs=27.1

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L  113 (448)
                      +..+.++|+|+|+ |++|+.+++.|+..|.. ++.
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~   46 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKA   46 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEE
Confidence            4456789999996 99999999999998854 554

>PLN02688 pyrroline-5-carboxylate reductase

Probab=89.74  E-value=3.6  Score=40.11  Aligned_cols=23  Identities=39%  Similarity=0.432  Sum_probs=21.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV  108 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV  108 (448)
                      +|.+||+|.+|+.++..|.++|.
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~   24 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGV   24 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCC
Confidence            69999999999999999999985

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=89.66  E-value=1.7  Score=41.58  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=26.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~   33 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRR   33 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            6889985 8999999999999996 57777653

>PLN00106 malate dehydrogenase

Probab=89.64  E-value=0.53  Score=48.10  Aligned_cols=36  Identities=28%  Similarity=0.489  Sum_probs=31.7

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~  118 (448)
                      ...||+|+|+ |.||+.++..|+..|. .+|.|+|-+.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~   54 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN   54 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            4569999999 9999999999998887 5799999865

>PRK08264 short chain dehydrogenase; Validated

Probab=89.63  E-value=0.49  Score=44.78  Aligned_cols=38  Identities=26%  Similarity=0.462  Sum_probs=32.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++++++|+|.|+ |++|+++++.|++.|..++.+++.+.
T Consensus         3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~   41 (238)
T PRK08264          3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDP   41 (238)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecCh
Confidence            357789999985 99999999999999987899988653

>PRK09072 short chain dehydrogenase; Provisional

Probab=89.60  E-value=1.9  Score=41.51  Aligned_cols=35  Identities=37%  Similarity=0.611  Sum_probs=29.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~   38 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRN   38 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            56788999985 9999999999999996 58887754

>PRK06196 oxidoreductase; Provisional

Probab=89.54  E-value=1.8  Score=43.27  Aligned_cols=36  Identities=22%  Similarity=0.414  Sum_probs=29.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~   59 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARR   59 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356788999988 8999999999999996 47776543

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.44  E-value=0.55  Score=42.54  Aligned_cols=114  Identities=16%  Similarity=0.096  Sum_probs=57.1

Q ss_pred             cEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHH-HHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKK-HFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~-~l~~inP~v~v~~~~~~~  163 (448)
                      +|.|+|+|.+|..++..+.. .++.-+.+.|.  .++..+...+-| ++--|+.+..+-.+ .-..+| ...+...... 
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~--~~~~~~a~ll~~-Ds~hg~~~~~v~~~~~~l~i~-g~~i~~~~~~-   76 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL--TDPETLAHLLKY-DSVHGRFPGEVEVDEDGLIVN-GKKIKVLAER-   76 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC--CCHHHHHHHhcc-cCCCCCCCCcEEEeCCEEEEC-CEEEEEEecC-
Confidence            79999999999999998874 45554555552  344444332211 22345554321100 000011 1122221111 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      ++.+.. .-.-..|+||||+.-+.++.....+...--+.+|-
T Consensus        77 ~p~~~~-w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkVii  117 (149)
T smart00846       77 DPANLP-WKELGVDIVVECTGKFTTREKASAHLKAGAKKVII  117 (149)
T ss_pred             ChHHCc-ccccCCeEEEeccccccchHHHHHHHHcCCCEEEe
Confidence            111111 11113899999999988887766555432233444

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=89.43  E-value=2.4  Score=42.56  Aligned_cols=127  Identities=20%  Similarity=0.250  Sum_probs=72.6

Q ss_pred             hCCcEEEEcCChHHHH-HHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSH-AAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~-va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +..||.|||||+.+.. .+..+...+  +.-+-++|.                   ...|++..++.+.--      .  
T Consensus         2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~-------------------~~~~a~~~a~~~~~~------~--   54 (342)
T COG0673           2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDR-------------------DPERAEAFAEEFGIA------K--   54 (342)
T ss_pred             CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecC-------------------CHHHHHHHHHHcCCC------c--
Confidence            4568999999988754 666777665  233444333                   334444444433211      1  


Q ss_pred             eccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccC
Q 013180          160 VLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTN  228 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~  228 (448)
                          .-.+.++++.. +.|+|+.|+-+ .....+...|.++|++++.=--.+....          -..+.+.-....-+
T Consensus        55 ----~~~~~~~ll~~~~iD~V~Iatp~-~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf  129 (342)
T COG0673          55 ----AYTDLEELLADPDIDAVYIATPN-ALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRF  129 (342)
T ss_pred             ----ccCCHHHHhcCCCCCEEEEcCCC-hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhc
Confidence                12345666664 37999999887 4455566777788888887322211000          01222233333447


Q ss_pred             ChhhHHHHHHHhh
Q 013180          229 DPLSRAVMHRLRK  241 (448)
Q Consensus       229 dpl~~~~r~~l~~  241 (448)
                      +|....+|..+..
T Consensus       130 ~p~~~~~k~li~~  142 (342)
T COG0673         130 DPAVQALKELIDS  142 (342)
T ss_pred             CHHHHHHHHHHhc
Confidence            7888888887765

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=89.41  E-value=2.2  Score=43.87  Aligned_cols=39  Identities=21%  Similarity=0.254  Sum_probs=29.3

Q ss_pred             HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          169 EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       169 ~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      ++++.+ +|+||+|+.....+. ....|.++|+++|+.++.
T Consensus        73 ~el~~~-vDVVIdaT~~~~~~e-~a~~~~~aGk~VI~~~~~  111 (341)
T PRK04207         73 EDLLEK-ADIVVDATPGGVGAK-NKELYEKAGVKAIFQGGE  111 (341)
T ss_pred             hHhhcc-CCEEEECCCchhhHH-HHHHHHHCCCEEEEcCCC
Confidence            445554 999999998765544 456777889999998874

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=89.40  E-value=0.5  Score=47.66  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=29.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+|+|+|+|++|+.+|..|+++| ..+++++.+.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence            468999999999999999999999 5688887664

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=89.39  E-value=0.52  Score=46.96  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-+|+.+|..|+.+|. +++++|.+.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999997 699998765

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=89.35  E-value=0.51  Score=48.14  Aligned_cols=33  Identities=33%  Similarity=0.475  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .|+|||.|-+|+.+|..|++.|. +++|+|...+
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~   34 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL   34 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999996 6999998654

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PTZ00188 adrenodoxin reductase; Provisional

Probab=89.34  E-value=2.4  Score=45.86  Aligned_cols=96  Identities=20%  Similarity=0.173  Sum_probs=59.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh--CCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHIDAK  159 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i--nP~v~v~~~  159 (448)
                      +.++|+|||.|..|.++|..|+ +.|+ +++|+|....-- =|.|..... ..   ++.+.+.+.+..+  ++.+++.. 
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~-~VtlfEk~p~pg-GLvR~GVaP-dh---~~~k~v~~~f~~~~~~~~v~f~g-  110 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERV-KVDIFEKLPNPY-GLIRYGVAP-DH---IHVKNTYKTFDPVFLSPNYRFFG-  110 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCC-eEEEEecCCCCc-cEEEEeCCC-CC---ccHHHHHHHHHHHHhhCCeEEEe-
Confidence            4679999999999999999765 5665 599998776554 344443332 22   3444444444332  35555442 


Q ss_pred             eccCCcc-chHHHhcCCCCeEEEccCCH
Q 013180          160 VLLYDAS-SEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       160 ~~~~~~~-~~~~ll~~~~D~VIda~Dn~  186 (448)
                      +..+..+ +.+++.. .||.||-|+...
T Consensus       111 nv~VG~Dvt~eeL~~-~YDAVIlAtGA~  137 (506)
T PTZ00188        111 NVHVGVDLKMEELRN-HYNCVIFCCGAS  137 (506)
T ss_pred             eeEecCccCHHHHHh-cCCEEEEEcCCC
Confidence            2223332 3556655 599999988754

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=89.34  E-value=0.52  Score=47.66  Aligned_cols=32  Identities=34%  Similarity=0.470  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+|.|||+|-+|+.+|..|+..|.+++.++|-
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi   33 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV   33 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence            47999999999999999999999878999997

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK07109 short chain dehydrogenase; Provisional

Probab=89.33  E-value=1.8  Score=44.00  Aligned_cols=35  Identities=29%  Similarity=0.516  Sum_probs=29.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++++.|+|.|+ ||+|..+++.|++.|. ++.+++.
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R   40 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR   40 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            467788999987 8999999999999996 5777664

>PRK08324 short chain dehydrogenase; Validated

Probab=89.29  E-value=3.3  Score=46.40  Aligned_cols=34  Identities=35%  Similarity=0.646  Sum_probs=29.0

Q ss_pred             hCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++.|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~  455 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLD  455 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCC
Confidence            457899999 59999999999999997 68887754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.28  E-value=2.1  Score=40.38  Aligned_cols=32  Identities=31%  Similarity=0.673  Sum_probs=26.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L  113 (448)
                      .|.+++|+|+|+ |++|..+++.|+..|.. +.+
T Consensus         2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~-v~~   34 (247)
T PRK05565          2 KLMGKVAIVTGASGGIGRAIAELLAKEGAK-VVI   34 (247)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEE
Confidence            367789999986 89999999999999976 444

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=89.28  E-value=3.2  Score=42.53  Aligned_cols=33  Identities=30%  Similarity=0.538  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~  218 (368)
T TIGR02818       186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI  218 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            679999999999999999888889877877654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=89.26  E-value=0.45  Score=47.74  Aligned_cols=31  Identities=32%  Similarity=0.607  Sum_probs=28.7

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |.|||+|.+|+.+|..|+..|.+++.|+|-|
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~   31 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV   31 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence            5799999999999999999886699999988

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=89.25  E-value=0.51  Score=47.95  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~  118 (448)
                      ||.|+|+ |.||+.+|..|+..|+ .+|.|+|-+.
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~   35 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG   35 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            6899999 9999999999999887 5799999764

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK08226 short chain dehydrogenase; Provisional

Probab=89.21  E-value=1.4  Score=42.32  Aligned_cols=36  Identities=33%  Similarity=0.673  Sum_probs=30.0

Q ss_pred             HHhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++.+++++|.| .||+|..+++.|+..|.. +.+++.
T Consensus         2 ~~~~~~~~lItG~s~giG~~la~~l~~~G~~-Vv~~~r   38 (263)
T PRK08226          2 GKLTGKTALITGALQGIGEGIARVFARHGAN-LILLDI   38 (263)
T ss_pred             CCCCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEecC
Confidence            357788999997 678999999999999975 777654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=89.16  E-value=0.35  Score=54.53  Aligned_cols=100  Identities=20%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc---ccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH---AVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq---~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++|.|||+|-.|+.+|..++.+|+ .++|+|.+.=.+...-.+   .+-..-+-|+...+...+.+..+.+.      . 
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~------~-  385 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT------L-  385 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe------C-
Confidence            379999999999999999999996 599999774333211000   00000111222222222233222221      1 


Q ss_pred             cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180          162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR  199 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~  199 (448)
                           +... +. ++|+||.|+ .+.+.|..+.+-....
T Consensus       386 -----~~~~-~~-~aDlViEav~E~l~~K~~vf~~l~~~  417 (714)
T TIGR02437       386 -----SYAG-FD-NVDIVVEAVVENPKVKAAVLAEVEQH  417 (714)
T ss_pred             -----CHHH-hc-CCCEEEEcCcccHHHHHHHHHHHHhh
Confidence                 1122 34 499999997 4788888776655544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=89.05  E-value=3.8  Score=40.29  Aligned_cols=94  Identities=21%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ..+|+|+|--+=|-.++..|...|+.-+.=               +.  .+.|.+           -++  .+..+...+
T Consensus         2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~S---------------va--t~~g~~-----------~~~--~~~v~~G~l   51 (248)
T PRK08057          2 MPRILLLGGTSEARALARALAAAGVDIVLS---------------LA--GRTGGP-----------ADL--PGPVRVGGF   51 (248)
T ss_pred             CceEEEEechHHHHHHHHHHHhCCCeEEEE---------------Ec--cCCCCc-----------ccC--CceEEECCC
Confidence            357999999999999999999888643321               11  123330           112  234455667


Q ss_pred             -CccchHHHhc-CCCCeEEEccCCHHHHH--HHHHHHHHcCCcEEEEc
Q 013180          164 -DASSEEEILS-GHPDFVLDCIDNIDTKV--ALLAACVRRGLKVLCAT  207 (448)
Q Consensus       164 -~~~~~~~ll~-~~~D~VIda~Dn~~~r~--~l~~~c~~~~ip~I~~~  207 (448)
                       +.+.+.+++. .++++|||++..++...  .+.+.|.+.|+|++--.
T Consensus        52 ~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~e   99 (248)
T PRK08057         52 GGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLE   99 (248)
T ss_pred             CCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence             7777777774 36999999999998765  67799999999999843

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=89.04  E-value=1  Score=48.02  Aligned_cols=39  Identities=33%  Similarity=0.505  Sum_probs=34.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      .+.+++|+|+|+|..|-.+++.|.+-| -.+++.|.+...
T Consensus         4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~   42 (448)
T COG0771           4 DFQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP   42 (448)
T ss_pred             cccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence            345899999999999999999999999 679999977666

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=89.01  E-value=2.2  Score=43.86  Aligned_cols=97  Identities=20%  Similarity=0.243  Sum_probs=53.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEE-EeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLL-VDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~L-iD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+|+|+|+ |.+|.+++..|....--++.. .|..                ..|+        .+.+..|++... ....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~   57 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV   57 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence            58999998 889999999999764334433 3311                1111        011111211100 0001


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      ++.... .... ++|+|+.|+.+-.. ..+...|.+.|+++|+-++.
T Consensus        58 ~~~~~~-~~~~-~vD~Vf~alP~~~~-~~~v~~a~~aG~~VID~S~~  101 (343)
T PRK00436         58 LEPLDP-EILA-GADVVFLALPHGVS-MDLAPQLLEAGVKVIDLSAD  101 (343)
T ss_pred             eecCCH-HHhc-CCCEEEECCCcHHH-HHHHHHHHhCCCEEEECCcc
Confidence            111111 1233 49999999988544 44555566789999996653

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=88.99  E-value=3.2  Score=42.42  Aligned_cols=35  Identities=34%  Similarity=0.542  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~  220 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDIN  220 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            36889999999999999999999998778877654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.96  E-value=2.6  Score=34.96  Aligned_cols=70  Identities=10%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             hHHHHHHHHHhhhCCCceEEEE--eccCCccc--hHHHhcCCCCeEEEccCC--HHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          138 PKALCLKKHFSSIFPECHIDAK--VLLYDASS--EEEILSGHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       138 ~Kv~~~~~~l~~inP~v~v~~~--~~~~~~~~--~~~ll~~~~D~VIda~Dn--~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                      ......++.+.+.+  .+...+  ........  +...+.. .|+||..+|-  ......+-+.|.++++|++.+-+.|
T Consensus        10 ~~~~~~~~~~~~~G--~~~~~hg~~~~~~~~~~~l~~~i~~-aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~   85 (97)
T PF10087_consen   10 DRERRYKRILEKYG--GKLIHHGRDGGDEKKASRLPSKIKK-ADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRG   85 (97)
T ss_pred             ccHHHHHHHHHHcC--CEEEEEecCCCCccchhHHHHhcCC-CCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence            45556667777755  444444  33333333  5555654 8999999995  4566788899999999999987544

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=88.94  E-value=5.2  Score=39.96  Aligned_cols=29  Identities=38%  Similarity=0.678  Sum_probs=24.7

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +|+|.| .|.+|+++++.|+..|. +++++|
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~   31 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD   31 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence            699999 59999999999999985 466665

>PRK08265 short chain dehydrogenase; Provisional

Probab=88.94  E-value=0.61  Score=45.15  Aligned_cols=36  Identities=31%  Similarity=0.521  Sum_probs=31.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDID   39 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889999987 9999999999999997 68887654

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.89  E-value=0.6  Score=46.48  Aligned_cols=33  Identities=33%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -++|.|||+|..|+.+|.+|+++|. +++++|.+
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS   36 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            4689999999999999999999996 68888865

>PRK13984 putative oxidoreductase; Provisional

Probab=88.86  E-value=2.3  Score=46.93  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ..++|+|||+|..|-.+|..|.+.|+ +++|+|.+..
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~  317 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSK  317 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            57789999999999999999999997 5889886543

>PRK07806 short chain dehydrogenase; Provisional

Probab=88.85  E-value=2.1  Score=40.65  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=28.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++.+++|+|.|+ ||+|..+++.|+..|. ++.+++
T Consensus         3 ~~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~   37 (248)
T PRK07806          3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNY   37 (248)
T ss_pred             CCCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEe
Confidence            466789999997 8999999999999996 466644

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=88.81  E-value=1.1  Score=43.04  Aligned_cols=37  Identities=24%  Similarity=0.570  Sum_probs=30.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.
T Consensus         3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~   40 (257)
T PRK07067          3 RLQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKP   40 (257)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCH
Confidence            367889999986 9999999999999996 577776543

>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes

Probab=88.74  E-value=2.4  Score=42.86  Aligned_cols=39  Identities=26%  Similarity=0.502  Sum_probs=32.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSL  124 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNL  124 (448)
                      +|.|||+||-|+.++..|.+.|+.  .+..+|.|.-.++.+
T Consensus         2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~   42 (304)
T cd02201           2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKS   42 (304)
T ss_pred             eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcC
Confidence            689999999999999999999986  456678887555444

FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=88.69  E-value=1  Score=43.64  Aligned_cols=31  Identities=26%  Similarity=0.482  Sum_probs=22.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC---CceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSG---VGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsG---Vg~i~LiD~D  117 (448)
                      +|.|||||++|..+++.+ +.|   +.-+.+.|.|
T Consensus         2 ~vgiVGcGaIG~~l~e~v-~~~~~~~e~v~v~D~~   35 (255)
T COG1712           2 KVGIVGCGAIGKFLLELV-RDGRVDFELVAVYDRD   35 (255)
T ss_pred             eEEEEeccHHHHHHHHHH-hcCCcceeEEEEecCC
Confidence            689999999999998765 444   4555555554

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=88.69  E-value=3.4  Score=44.16  Aligned_cols=34  Identities=32%  Similarity=0.495  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..++|+|||.|..|..+|..|++.|. +++++|..
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~-~V~vie~~  175 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGH-KVTVFERA  175 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEecC
Confidence            45799999999999999999999997 59999865

>PRK13243 glyoxylate reductase; Reviewed

Probab=88.68  E-value=0.59  Score=47.82  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=31.7

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~  181 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR  181 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence            36899999999999999999999999997 5777665

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=88.67  E-value=0.63  Score=46.70  Aligned_cols=32  Identities=34%  Similarity=0.651  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|.|||+|.+|+.+|..|+++|. +++++|.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~   36 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM   36 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            579999999999999999999996 68888865

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=88.66  E-value=0.63  Score=50.45  Aligned_cols=33  Identities=33%  Similarity=0.493  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-.|+.+|.+|+++|+ .++++|.+.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~   40 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA   40 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence            579999999999999999999996 488888663

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=88.65  E-value=2  Score=43.05  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+++|+|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r   38 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGW-HVIMACR   38 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEEC
Confidence            45678999975 8999999999999994 6777664

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.63  E-value=0.6  Score=46.34  Aligned_cols=34  Identities=26%  Similarity=0.423  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ..|+|||+|-.|+.+|..|++.|+. ++|+|.+.-
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence            3699999999999999999999977 889887654

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=88.62  E-value=3.4  Score=41.09  Aligned_cols=98  Identities=21%  Similarity=0.347  Sum_probs=51.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ||+|+|+ |-+|+.+...|...|..-+.+ +..              .-|+  ...+.+.+.+.+..|++-|.+-.  ++
T Consensus         2 riLI~GasG~lG~~l~~~l~~~~~~v~~~-~r~--------------~~dl--~d~~~~~~~~~~~~pd~Vin~aa--~~   62 (286)
T PF04321_consen    2 RILITGASGFLGSALARALKERGYEVIAT-SRS--------------DLDL--TDPEAVAKLLEAFKPDVVINCAA--YT   62 (286)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTTSEEEEEE-STT--------------CS-T--TSHHHHHHHHHHH--SEEEE-------
T ss_pred             EEEEECCCCHHHHHHHHHHhhCCCEEEEe-Cch--------------hcCC--CCHHHHHHHHHHhCCCeEeccce--ee
Confidence            7999995 999999999999887543333 333              1122  23455566666666665444321  11


Q ss_pred             c-cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          165 A-SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       165 ~-~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      . +..+.    +++.  ...-|...-..|.++|.++++++|+-+.
T Consensus        63 ~~~~ce~----~p~~--a~~iN~~~~~~la~~~~~~~~~li~~ST  101 (286)
T PF04321_consen   63 NVDACEK----NPEE--AYAINVDATKNLAEACKERGARLIHIST  101 (286)
T ss_dssp             -HHHHHH----SHHH--HHHHHTHHHHHHHHHHHHCT-EEEEEEE
T ss_pred             cHHhhhh----Chhh--hHHHhhHHHHHHHHHHHHcCCcEEEeec
Confidence            0 00000    0000  0001223345788999999999988553

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=88.55  E-value=0.58  Score=47.53  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=29.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ||.|||+ |.||+.+|..|+..|+ .+|.|+|-.
T Consensus         2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~   35 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV   35 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence            7999999 9999999999998886 689999986

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02503 fatty acyl-CoA reductase 2

Probab=88.52  E-value=6.1  Score=43.84  Aligned_cols=133  Identities=17%  Similarity=0.173  Sum_probs=75.9

Q ss_pred             CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        75 G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      |..-++-+++++|+|-|+ |-+|+.+++.|++.+  |++|.++....=..+-..|..    ..+   +-..+-+++++.+
T Consensus       110 ~~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~----~~l---~~~~lf~~l~~~~  182 (605)
T PLN02503        110 GIGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLK----NEV---IDAELFKCLQETH  182 (605)
T ss_pred             CcchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHH----HHH---hhhhhHHHHHHhc
Confidence            444567889999999988 889999999999874  788888543211111111110    000   0001123444545


Q ss_pred             CC-------ceEEEEeccCCcc-------chHHHhcCCCCeEEEccCCHH--------------HHHHHHHHHHHcC--C
Q 013180          152 PE-------CHIDAKVLLYDAS-------SEEEILSGHPDFVLDCIDNID--------------TKVALLAACVRRG--L  201 (448)
Q Consensus       152 P~-------v~v~~~~~~~~~~-------~~~~ll~~~~D~VIda~Dn~~--------------~r~~l~~~c~~~~--i  201 (448)
                      |.       -++.++...++..       ....+.. ++|+||.+..+..              .-..+.++|.+.+  .
T Consensus       183 g~~~~~~~~~Ki~~v~GDl~d~~LGLs~~~~~~L~~-~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk  261 (605)
T PLN02503        183 GKSYQSFMLSKLVPVVGNVCESNLGLEPDLADEIAK-EVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLK  261 (605)
T ss_pred             CccccccccccEEEEEeeCCCcccCCCHHHHHHHHh-cCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            42       3577666665543       2333444 4999998875321              1235677887753  4


Q ss_pred             cEEEEcCCCCccCC
Q 013180          202 KVLCATGAGARADP  215 (448)
Q Consensus       202 p~I~~~g~G~k~dp  215 (448)
                      .++..+.+...++.
T Consensus       262 ~fV~vSTayVyG~~  275 (605)
T PLN02503        262 LFLQVSTAYVNGQR  275 (605)
T ss_pred             eEEEccCceeecCC
Confidence            57776655443443

>PRK05650 short chain dehydrogenase; Provisional

Probab=88.51  E-value=2.9  Score=40.51  Aligned_cols=30  Identities=33%  Similarity=0.467  Sum_probs=24.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|+|.|+ ||+|..+++.|+..|.. +.++|.
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~-V~~~~r   32 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWR-LALADV   32 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence            6888875 89999999999999974 666554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=88.47  E-value=0.67  Score=47.42  Aligned_cols=88  Identities=20%  Similarity=0.236  Sum_probs=58.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|++++|.|||+|.+|..+|+.|...|. ++..+|...-                   +..   .       ..+    
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~-------------------~~~---~-------~~~----  187 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPN-------------------KDL---D-------FLT----  187 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChh-------------------Hhh---h-------hhh----
Confidence            36899999999999999999999999996 5788775420                   000   0       000    


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCH-HHHHHHHHHHHH---cCCcEEEE
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNI-DTKVALLAACVR---RGLKVLCA  206 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~-~~r~~l~~~c~~---~~ip~I~~  206 (448)
                         + ..+.++++.. .|+|+.|+... +++..+++-...   .+.-+|+.
T Consensus       188 ---~-~~~l~ell~~-aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~  233 (330)
T PRK12480        188 ---Y-KDSVKEAIKD-ADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA  233 (330)
T ss_pred             ---c-cCCHHHHHhc-CCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence               1 1235667765 99999988754 466666643332   34445553

>PRK08589 short chain dehydrogenase; Validated

Probab=88.47  E-value=2.1  Score=41.78  Aligned_cols=34  Identities=29%  Similarity=0.532  Sum_probs=28.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++++++++|.|+ ||+|.++++.|+..|. ++.++|
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~   37 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD   37 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence            467889999987 8999999999999996 566654

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.39  E-value=2.7  Score=42.37  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=56.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|.|+|++|..++..+...|+..+..+|...                   .|.+.+    +++....-+....  
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~-------------------~~~~~~----~~~Ga~~~i~~~~--  214 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINS-------------------EKLALA----KSLGAMQTFNSRE--  214 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCH-------------------HHHHHH----HHcCCceEecCcc--
Confidence            467999999999999999999999988777765321                   122211    1111110111100  


Q ss_pred             CCccchHHHhc-CCCC-eEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          163 YDASSEEEILS-GHPD-FVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       163 ~~~~~~~~ll~-~~~D-~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      .+.+...++.. ..+| +||||+....+-....+..+..|.-++
T Consensus       215 ~~~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~  258 (347)
T PRK10309        215 MSAPQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL  258 (347)
T ss_pred             cCHHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            01111222222 2477 999999987665666677776666333

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=88.34  E-value=2.4  Score=42.09  Aligned_cols=82  Identities=22%  Similarity=0.330  Sum_probs=59.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++.++++|-|+ +|+|-++|+.|++-|.. +.|+          .|.         +.|-+.+++.|.+.+ .++++.++
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLv----------aR~---------~~kL~~la~~l~~~~-~v~v~vi~   62 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYN-LILV----------ARR---------EDKLEALAKELEDKT-GVEVEVIP   62 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEE----------eCc---------HHHHHHHHHHHHHhh-CceEEEEE
Confidence            46788999998 79999999999999965 6663          232         357788888888887 78888888


Q ss_pred             ccCCccc-hHHHh----c--CCCCeEEEccC
Q 013180          161 LLYDASS-EEEIL----S--GHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~-~~~ll----~--~~~D~VIda~D  184 (448)
                      ..++..+ ...+.    .  ...|++|++..
T Consensus        63 ~DLs~~~~~~~l~~~l~~~~~~IdvLVNNAG   93 (265)
T COG0300          63 ADLSDPEALERLEDELKERGGPIDVLVNNAG   93 (265)
T ss_pred             CcCCChhHHHHHHHHHHhcCCcccEEEECCC
Confidence            7776543 33322    1  25899987754

>PTZ00325 malate dehydrogenase; Provisional

Probab=88.28  E-value=0.6  Score=47.66  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=30.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~  116 (448)
                      ++-.||+|+|+ |.||+.++..|+..|. .+|.|+|-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di   42 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI   42 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence            44569999999 9999999999997776 47999988

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.27  E-value=0.56  Score=50.19  Aligned_cols=40  Identities=28%  Similarity=0.328  Sum_probs=34.8

Q ss_pred             HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           77 ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +....+.+++|+|+|+||.|..++..|.+.|. .+++.|.+
T Consensus         8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~   47 (473)
T PRK00141          8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN   47 (473)
T ss_pred             hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            34455677899999999999999999999998 89999964

>PRK06198 short chain dehydrogenase; Provisional

Probab=88.26  E-value=1  Score=43.10  Aligned_cols=37  Identities=22%  Similarity=0.425  Sum_probs=32.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ |++|+.+++.|+..|..++.++|.+
T Consensus         3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~   40 (260)
T PRK06198          3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRN   40 (260)
T ss_pred             CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCC
Confidence            477889999986 8999999999999998778887664

>PRK08643 acetoin reductase; Validated

Probab=88.23  E-value=3.3  Score=39.60  Aligned_cols=31  Identities=29%  Similarity=0.486  Sum_probs=25.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++.++|.| .||+|.++++.|+..|. ++.++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~   33 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVD   33 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence            45677775 57999999999999996 577766

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=88.17  E-value=2.8  Score=39.85  Aligned_cols=34  Identities=26%  Similarity=0.595  Sum_probs=28.1

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++|+|.| .|++|+++++.|+..|. ++.++|.
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r   36 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADL   36 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            4678999998 59999999999999986 5666544

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=88.14  E-value=6.1  Score=40.05  Aligned_cols=95  Identities=21%  Similarity=0.242  Sum_probs=56.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++-+|.|||+|.+|...+..|.++. +.=..++|.|.=                 ...... +++   ..  +..     
T Consensus         3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e-----------------s~gla~-A~~---~G--i~~-----   54 (302)
T PRK08300          3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE-----------------SDGLAR-ARR---LG--VAT-----   54 (302)
T ss_pred             CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh-----------------hHHHHH-HHH---cC--CCc-----
Confidence            4578999999999999888777653 222223343310                 000011 111   11  111     


Q ss_pred             cCCccchHHHhc----CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          162 LYDASSEEEILS----GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~----~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                        ..++.++++.    .+.|+|++|+.+. ........+.+.|+.+|+-..
T Consensus        55 --~~~~ie~LL~~~~~~dIDiVf~AT~a~-~H~e~a~~a~eaGk~VID~sP  102 (302)
T PRK08300         55 --SAEGIDGLLAMPEFDDIDIVFDATSAG-AHVRHAAKLREAGIRAIDLTP  102 (302)
T ss_pred             --ccCCHHHHHhCcCCCCCCEEEECCCHH-HHHHHHHHHHHcCCeEEECCc
Confidence              1123444543    3599999999874 556667778899999998554

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=88.13  E-value=3.3  Score=40.65  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=30.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~  153 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADP  153 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            36789999999999999999888999988887753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK07074 short chain dehydrogenase; Provisional

Probab=88.11  E-value=2.8  Score=40.07  Aligned_cols=33  Identities=36%  Similarity=0.605  Sum_probs=27.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|.|+ |++|..+++.|+..|. ++.++|.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~   35 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDID   35 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467999987 8999999999999995 57776653

>PRK08278 short chain dehydrogenase; Provisional

Probab=88.09  E-value=3.6  Score=40.11  Aligned_cols=35  Identities=23%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++++|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKT   39 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            56788999986 8999999999999997 57777655

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=88.07  E-value=6.4  Score=39.94  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=26.5

Q ss_pred             hCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++|+|.| +|.+|+++++.|+..|. ++.+++.
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r   42 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR   42 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            456899998 58899999999999986 4555544

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=88.04  E-value=3.9  Score=41.83  Aligned_cols=108  Identities=12%  Similarity=0.127  Sum_probs=58.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe--
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV--  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~--  160 (448)
                      .-||.|||+|.+|..++..|... ++.=+.++|.+.-+  .+.       .++|.....-..+    +.+.+.+-.+.  
T Consensus         3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~--~~~-------~~~~v~~~~d~~e----~l~~iDVViIctP   69 (324)
T TIGR01921         3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAE--TLD-------TETPVYAVADDEK----HLDDVDVLILCMG   69 (324)
T ss_pred             CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHH--HHh-------hcCCccccCCHHH----hccCCCEEEEcCC
Confidence            46899999999999999999865 66656677776311  111       1122211111111    12344444332  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC----HHHHHHHHHHHHHcCCcEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN----IDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn----~~~r~~l~~~c~~~~ip~I~  205 (448)
                      .....+....++....++| |+-|.    .+.+..|.++|++.+.-.+.
T Consensus        70 s~th~~~~~~~L~aG~NVV-~s~~~h~~~p~~~~~ld~AAk~~g~vsvi  117 (324)
T TIGR01921        70 SATDIPEQAPYFAQFANTV-DSFDNHRDIPRHRQVMDAAAKAAGNVSVI  117 (324)
T ss_pred             CccCHHHHHHHHHcCCCEE-ECCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence            2233344445555446654 34442    24466788888875444443

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK07677 short chain dehydrogenase; Provisional

Probab=88.03  E-value=3.4  Score=39.52  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~   34 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRT   34 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            357888877 6799999999999998 68887655

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=88.02  E-value=3.1  Score=47.20  Aligned_cols=35  Identities=29%  Similarity=0.339  Sum_probs=31.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -..++|+|||+|..|..+|..|++.|. +++|+|..
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~-~V~v~e~~  463 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGY-DVTVFEAL  463 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            357899999999999999999999996 59999874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=88.01  E-value=0.37  Score=54.59  Aligned_cols=100  Identities=14%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc---cccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA---VATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~---l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++|.|||+|-.|+-+|..++.+|+ .++|+|.+.=.+.......   +-..-.-|+-..+...+.+.++.+      .. 
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~------~~-  407 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP------TL-  407 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE------eC-
Confidence            579999999999999999999996 5889987743322210000   000001121111222222222221      11 


Q ss_pred             cCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHHHHHHc
Q 013180          162 LYDASSEEEILSGHPDFVLDCI-DNIDTKVALLAACVRR  199 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~~c~~~  199 (448)
                           +.+. +. ++|+||.|+ .+.+.|..+.+-..+.
T Consensus       408 -----~~~~-~~-~aDlViEAv~E~l~~K~~vf~~l~~~  439 (737)
T TIGR02441       408 -----DYSG-FK-NADMVIEAVFEDLSLKHKVIKEVEAV  439 (737)
T ss_pred             -----CHHH-hc-cCCeehhhccccHHHHHHHHHHHHhh
Confidence                 1122 34 499999987 5788888776655544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=87.96  E-value=0.68  Score=49.12  Aligned_cols=32  Identities=41%  Similarity=0.408  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..+|+|||.|-+|+++|..|++.|+. ++|+|.
T Consensus         2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~   33 (436)
T PRK05335          2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM   33 (436)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence            35899999999999999999999965 899984

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=87.93  E-value=0.68  Score=48.31  Aligned_cols=35  Identities=31%  Similarity=0.437  Sum_probs=30.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|++++|.|||+|.+|+.+|+.|...|+. +..+|+
T Consensus       113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~~-V~~~dp  147 (378)
T PRK15438        113 SLHDRTVGIVGVGNVGRRLQARLEALGIK-TLLCDP  147 (378)
T ss_pred             CcCCCEEEEECcCHHHHHHHHHHHHCCCE-EEEECC
Confidence            58999999999999999999999999975 666663

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=87.88  E-value=2.9  Score=39.68  Aligned_cols=30  Identities=30%  Similarity=0.399  Sum_probs=24.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRL  111 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i  111 (448)
                      +.+++|+|.|+ ||+|.+++..|+..|..-+
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~   32 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIA   32 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence            45678999976 7999999999999996533

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=87.87  E-value=2.3  Score=49.81  Aligned_cols=35  Identities=34%  Similarity=0.450  Sum_probs=31.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~-~VtV~Ek~~  572 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGH-PVTVFEREE  572 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-eEEEEeccc
Confidence            56899999999999999999999996 699998653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=87.83  E-value=1.5  Score=43.47  Aligned_cols=80  Identities=11%  Similarity=0.203  Sum_probs=49.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +.+|.+||+|-+|+.++..|..+|.   .+|.++|.+                   ..|.+.+.+.+     .+++  . 
T Consensus         2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~-------------------~~~~~~l~~~~-----g~~~--~-   54 (272)
T PRK12491          2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLN-------------------VSNLKNASDKY-----GITI--T-   54 (272)
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCC-------------------HHHHHHHHHhc-----CcEE--e-
Confidence            4579999999999999999999985   245554332                   12333222211     1221  1 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC  196 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c  196 (448)
                           .+..+.+. ++|+||-|+-.......+..+.
T Consensus        55 -----~~~~e~~~-~aDiIiLavkP~~~~~vl~~l~   84 (272)
T PRK12491         55 -----TNNNEVAN-SADILILSIKPDLYSSVINQIK   84 (272)
T ss_pred             -----CCcHHHHh-hCCEEEEEeChHHHHHHHHHHH
Confidence                 12233444 4999999999766666665554

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=87.79  E-value=0.98  Score=45.98  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=30.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      .|+|||.|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~   35 (365)
T TIGR03364         2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA   35 (365)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence            69999999999999999999996 69999988764

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=87.77  E-value=7.2  Score=39.88  Aligned_cols=124  Identities=25%  Similarity=0.334  Sum_probs=75.9

Q ss_pred             CCcEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC-CceEEEEec
Q 013180           84 GSYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP-ECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP-~v~v~~~~~  161 (448)
                      ..+|+|. |+|=+||+++..|.+.|-+ +.++|       ||+|-.+            ..-++++++.+ .-.|..+..
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~-v~~vD-------Nl~n~~~------------~sl~r~~~l~~~~~~v~f~~~   61 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYG-VVIVD-------NLNNSYL------------ESLKRVRQLLGEGKSVFFVEG   61 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCc-EEEEe-------cccccch------------hHHHHHHHhcCCCCceEEEEe
Confidence            4678888 6789999999999999977 44544       6776652            22234444443 123444443


Q ss_pred             cC-CccchHHHhcC-CCCeEEEccC-----------------CHHHHHHHHHHHHHcCCc-EEEEcCCCCccCCCceEEc
Q 013180          162 LY-DASSEEEILSG-HPDFVLDCID-----------------NIDTKVALLAACVRRGLK-VLCATGAGARADPTRIRVA  221 (448)
Q Consensus       162 ~~-~~~~~~~ll~~-~~D~VIda~D-----------------n~~~r~~l~~~c~~~~ip-~I~~~g~G~k~dpt~i~i~  221 (448)
                      .+ +.+.++.++.. ++|-|+--..                 |+..-.-+.+.|.+++.| ++++++++..+.|+.+-|.
T Consensus        62 Dl~D~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~t  141 (343)
T KOG1371|consen   62 DLNDAEALEKLFSEVKFDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPIT  141 (343)
T ss_pred             ccCCHHHHHHHHhhcCCceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeecc
Confidence            33 33344444432 3665552111                 233345677889888877 5567777778999997776


Q ss_pred             cccccc
Q 013180          222 DLREST  227 (448)
Q Consensus       222 di~~~~  227 (448)
                      +-..+.
T Consensus       142 e~~~t~  147 (343)
T KOG1371|consen  142 EEDPTD  147 (343)
T ss_pred             CcCCCC
Confidence            655554

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=87.71  E-value=0.76  Score=47.61  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~   33 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP   33 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence            69999999999999999999995 699999984

>PRK06185 hypothetical protein; Provisional

Probab=87.71  E-value=0.73  Score=47.66  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=31.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+..|+|||.|-+|..+|..|++.|+ +++|+|.+.
T Consensus         5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~   39 (407)
T PRK06185          5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA   39 (407)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence            45789999999999999999999997 599999764

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=87.70  E-value=0.8  Score=47.94  Aligned_cols=34  Identities=29%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCce------EEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D  117 (448)
                      -.||.|||+ |.||+.+|..|+..|+-.      |.|+|.|
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD   84 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE   84 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC
Confidence            368999999 999999999999999854      6666554

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01746 Thioester-redct thioester reductase domain

Probab=87.69  E-value=6.9  Score=39.02  Aligned_cols=30  Identities=23%  Similarity=0.360  Sum_probs=24.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEe
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVD  115 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD  115 (448)
                      +|+|.|+ |++|+++++.|+..|- .++..+.
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~   32 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLV   32 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEE
Confidence            5889987 9999999999999984 3566643

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=87.68  E-value=0.69  Score=47.50  Aligned_cols=35  Identities=34%  Similarity=0.400  Sum_probs=30.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ...|+|||+|-+|+.+|..|++.|+ +++|+|.+..
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCCC
Confidence            4579999999999999999999997 5999998753

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=87.68  E-value=3.5  Score=46.09  Aligned_cols=35  Identities=40%  Similarity=0.584  Sum_probs=31.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..++|+|||+|..|..+|..|++.|. +++|+|...
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~  226 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANE  226 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            45799999999999999999999996 599998653

>PRK07454 short chain dehydrogenase; Provisional

Probab=87.61  E-value=3.9  Score=38.69  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=27.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++++|.|+ |++|..+++.|++.|. ++.++|.+
T Consensus         6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~   39 (241)
T PRK07454          6 MPRALITGASSGIGKATALAFAKAGW-DLALVARS   39 (241)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467889986 9999999999999997 68886653

>PLN02928 oxidoreductase family protein

Probab=87.60  E-value=0.71  Score=47.58  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=62.3

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...      .+..   ....|              .|...+...
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~------~~~~---~~~~~--------------~~~~~~~~~  210 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSW------TSEP---EDGLL--------------IPNGDVDDL  210 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCC------Chhh---hhhhc--------------ccccccccc
Confidence            36899999999999999999999999997 677766420      0000   00000              000000000


Q ss_pred             -eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH---cCCcEEEEcCCCC
Q 013180          160 -VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR---RGLKVLCATGAGA  211 (448)
Q Consensus       160 -~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~---~~ip~I~~~g~G~  211 (448)
                       .......+.++++.. +|+|+.+.- +.+++..+++....   .+.-+|+. +-|.
T Consensus       211 ~~~~~~~~~L~ell~~-aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINv-aRG~  265 (347)
T PLN02928        211 VDEKGGHEDIYEFAGE-ADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNI-ARGG  265 (347)
T ss_pred             ccccCcccCHHHHHhh-CCEEEECCCCChHhhcccCHHHHhcCCCCeEEEEC-CCcc
Confidence             011133467788876 999998885 66777777653332   33335553 3443

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=87.58  E-value=3.2  Score=39.30  Aligned_cols=35  Identities=20%  Similarity=0.495  Sum_probs=28.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++++|.|+ |++|+.+++.|+..|. ++.++|.+
T Consensus         1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~   36 (250)
T TIGR03206         1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLN   36 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCC
Confidence            46789999985 8899999999999986 46665543

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=87.58  E-value=0.71  Score=51.52  Aligned_cols=33  Identities=30%  Similarity=0.384  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            589999999999999999999997 599999874

>PRK06545 prephenate dehydrogenase; Validated

Probab=87.57  E-value=1.7  Score=44.90  Aligned_cols=32  Identities=25%  Similarity=0.590  Sum_probs=27.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|-+|+.++..|.+.|. .+.++|.|
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~   32 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD   32 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence            369999999999999999999997 56777665

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=87.53  E-value=0.69  Score=47.24  Aligned_cols=32  Identities=28%  Similarity=0.384  Sum_probs=27.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCC-c-----eEEEEeC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGV-G-----RLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGV-g-----~i~LiD~  116 (448)
                      .||.|||+ |.||+.+|..|+..|+ +     +|.|+|-
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di   42 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI   42 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence            58999999 9999999999999987 4     5888765

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd00704 MDH Malate dehydrogenase

Probab=87.50  E-value=0.71  Score=47.13  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCce------EEEEeCCc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGR------LLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~------i~LiD~D~  118 (448)
                      .||.|+|+ |.+|+.++..|+..|+-.      |.|+|-+.
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~   41 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP   41 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence            37999999 999999999999988765      99998753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07856 short chain dehydrogenase; Provisional

Probab=87.49  E-value=2.3  Score=40.67  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +++++++|.|+ ||+|..+++.|+..|. ++.++|.+.
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~   40 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA   40 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence            66889999986 7999999999999997 588877653

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=87.46  E-value=7.3  Score=37.73  Aligned_cols=31  Identities=16%  Similarity=0.360  Sum_probs=25.0

Q ss_pred             EEEEc-CChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           87 VVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        87 VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      |+|.| +|-+|+++++.|+..|. +++.++.+.
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~   32 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH-EVTILTRSP   32 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC-EEEEEeCCC
Confidence            56776 58899999999999995 688777654

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=87.45  E-value=4.4  Score=33.52  Aligned_cols=90  Identities=16%  Similarity=0.212  Sum_probs=53.2

Q ss_pred             hCCcEEEEcCChHHHHHHHH-HHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAM-LLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~-LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++.+|+|+|+|++|..++.. ....|.+-..++|.|.=   .+.+...                         .+..+. 
T Consensus         2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~---~~G~~i~-------------------------gipV~~-   52 (96)
T PF02629_consen    2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPE---KIGKEIG-------------------------GIPVYG-   52 (96)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTT---TTTSEET-------------------------TEEEES-
T ss_pred             CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCC---ccCcEEC-------------------------CEEeec-
Confidence            46789999999999988753 34668888888887632   2222211                         122221 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        +-+.+.+.. + .|+.|-|+..........+++ +.|++-|..
T Consensus        53 --~~~~l~~~~-~-i~iaii~VP~~~a~~~~~~~~-~~gIk~i~n   92 (96)
T PF02629_consen   53 --SMDELEEFI-E-IDIAIITVPAEAAQEVADELV-EAGIKGIVN   92 (96)
T ss_dssp             --SHHHHHHHC-T-TSEEEEES-HHHHHHHHHHHH-HTT-SEEEE
T ss_pred             --cHHHhhhhh-C-CCEEEEEcCHHHHHHHHHHHH-HcCCCEEEE
Confidence              222334444 3 888888886655554544444 478777664

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=87.35  E-value=5.4  Score=41.01  Aligned_cols=34  Identities=41%  Similarity=0.635  Sum_probs=30.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus       191 g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~  224 (373)
T cd08299         191 GSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDIN  224 (373)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            5789999999999999999999999888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK06184 hypothetical protein; Provisional

Probab=87.33  E-value=0.71  Score=49.54  Aligned_cols=34  Identities=29%  Similarity=0.464  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+..|+|||+|.+|..+|..|++.|+. ++|+|..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~   35 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA   35 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence            356899999999999999999999995 9999854

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=87.30  E-value=0.87  Score=43.33  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=29.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |++++|+|.|+ ||+|..+++.|+..|. ++.+++.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r   37 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGR   37 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            67899999998 7999999999999997 5777553

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=87.29  E-value=2.2  Score=45.08  Aligned_cols=33  Identities=27%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..|+|+|+||.|-.+|..|...|. +++..|..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~   38 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR   38 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence            4579999999999999999999997 58888854

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=87.27  E-value=0.72  Score=47.54  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ...|+|||+|-+|..+|..|++.|+. ++|+|....
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~~   40 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGREP   40 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCCC
Confidence            46799999999999999999999986 999998653

>PRK09330 cell division protein FtsZ; Validated

Probab=87.21  E-value=3.4  Score=43.26  Aligned_cols=108  Identities=19%  Similarity=0.278  Sum_probs=62.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCc--cccCCCcccccccCCc---cC---chHHHHHHHHHhhhC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQ--VSVSSLNRHAVATRAD---VG---TPKALCLKKHFSSIF  151 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~--V~~sNLnRq~l~~~~d---vG---~~Kv~~~~~~l~~in  151 (448)
                      -...+|-|||+||-|+.++.+|.+.|+.  .+..++.|.  +..++..+-.+....-   .|   .|.  .-++...+  
T Consensus        11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~pe--~G~~aaee--   86 (384)
T PRK09330         11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANPE--VGRKAAEE--   86 (384)
T ss_pred             ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCHH--HHHHHHHH--
Confidence            4467899999999999999999999876  456667776  3333333333332210   11   111  11111110  


Q ss_pred             CCceEEEEeccCCccchHHHhcCCCCeEEEccC------CHHHHHHHHHHHHHcCCcEEEEc
Q 013180          152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCID------NIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~D------n~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                                  ..+...+.+.+ +|.|+-+..      +-.+. .+.+++++++++.+...
T Consensus        87 ------------~~e~I~~~l~~-~D~vfI~AGmGGGTGTGaap-vIA~iake~g~ltvaVv  134 (384)
T PRK09330         87 ------------SREEIREALEG-ADMVFITAGMGGGTGTGAAP-VVAEIAKELGILTVAVV  134 (384)
T ss_pred             ------------HHHHHHHHHcC-CCEEEEEecCCCcccHHHHH-HHHHHHHHcCCcEEEEE
Confidence                        01112334444 887775433      33344 68899999998877754

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=87.19  E-value=4.7  Score=41.45  Aligned_cols=163  Identities=25%  Similarity=0.338  Sum_probs=87.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|..+.+.|+|.|-+||++|..+-..| .++..  .|.+.+....+.+                        .++.    
T Consensus       143 el~GKTLgvlG~GrIGseVA~r~k~~g-m~vI~--~dpi~~~~~~~a~------------------------gvq~----  191 (406)
T KOG0068|consen  143 ELRGKTLGVLGLGRIGSEVAVRAKAMG-MHVIG--YDPITPMALAEAF------------------------GVQL----  191 (406)
T ss_pred             EEeccEEEEeecccchHHHHHHHHhcC-ceEEe--ecCCCchHHHHhc------------------------ccee----
Confidence            478999999999999999999876666 44444  3444332222211                        1111    


Q ss_pred             ccCCccchHHHhcCCCCeEEEcc-CCHHHHHHHHH---HHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCI-DNIDTKVALLA---ACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVM  236 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~-Dn~~~r~~l~~---~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r  236 (448)
                           -..++++.. .|+|---+ -.++++..+|+   +..+.|..+|+.+ -|+-.|             .+.|.+++.
T Consensus       192 -----vsl~Eil~~-ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~a-RGGvVD-------------e~ALv~Al~  251 (406)
T KOG0068|consen  192 -----VSLEEILPK-ADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVA-RGGVVD-------------EPALVRALD  251 (406)
T ss_pred             -----eeHHHHHhh-cCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEec-CCceec-------------hHHHHHHHh
Confidence                 123444443 66654322 34555555553   2346899999965 333322             234444432


Q ss_pred             HHHhhhcCccCCee-EEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcC
Q 013180          237 HRLRKDYGIEGGIP-VVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER  314 (448)
Q Consensus       237 ~~l~~~~g~~g~i~-~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~  314 (448)
                            .|..+|-. -||+.|+|.....            .++-.+|+  +-..|=+|..+.-.-.-+|.|+.+.+.++
T Consensus       252 ------sG~vaGaAlDVy~~Epp~~~~~------------~~Lv~hpn--Vi~TpHlgasT~EAq~~iaievaea~~~~  310 (406)
T KOG0068|consen  252 ------SGQVAGAALDVYPEEPPKNGWD------------SELVSHPN--VIVTPHLGASTEEAQSRIAIEVAEAVSDY  310 (406)
T ss_pred             ------cCcccceeeecccCCCCccchh------------HHHhcCCc--eeecCccccchHHHHHHHHHHHHHHHHHH
Confidence                  45555443 3788887753100            00111222  22346677544444444777777776664

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=87.18  E-value=0.8  Score=47.87  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=31.6

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..|++++|.|||+|.+|+.+++.|...|+. +..+|+
T Consensus       112 ~~l~gktvGIIG~G~IG~~va~~l~a~G~~-V~~~Dp  147 (381)
T PRK00257        112 VDLAERTYGVVGAGHVGGRLVRVLRGLGWK-VLVCDP  147 (381)
T ss_pred             CCcCcCEEEEECCCHHHHHHHHHHHHCCCE-EEEECC
Confidence            368999999999999999999999999974 666665

>PRK08818 prephenate dehydrogenase; Provisional

Probab=87.18  E-value=3.6  Score=42.86  Aligned_cols=35  Identities=20%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +...+|+|||+ |-+|..++..|-...-.+|+.+|.
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~   37 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP   37 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence            45679999999 999999999999654346777776

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=87.18  E-value=6.7  Score=38.45  Aligned_cols=61  Identities=33%  Similarity=0.376  Sum_probs=42.2

Q ss_pred             cEEEEcCChHHHHHHH-----HHHHcCCceEEEEeCCccccCCCcccccccC--CccCchHHHHHHHHHhh
Q 013180           86 YVVVIGLGGVGSHAAA-----MLLRSGVGRLLLVDFDQVSVSSLNRHAVATR--ADVGTPKALCLKKHFSS  149 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~-----~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~--~dvG~~Kv~~~~~~l~~  149 (448)
                      +|.|.|=||+|-....     .|..-|-.++..||.|.  -.||.++.-...  ..+|. |-+.++++...
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp--d~nL~~~LGve~~~~~lg~-~~e~~~k~~~a   69 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP--DSNLPEALGVEEPMKYLGG-KRELLKKRTGA   69 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC--CCChHHhcCCCCCCccccc-HHHHHHHHhcc
Confidence            6899999999965443     33444547899999998  889999976543  34565 33455555444

>PRK06046 alanine dehydrogenase; Validated

Probab=87.16  E-value=3.6  Score=41.94  Aligned_cols=77  Identities=17%  Similarity=0.188  Sum_probs=52.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ...+|.|+|+|+.|.+.+.+|. ..++..+.++|.+.                   .+++.+++++.+..+ +++..+. 
T Consensus       128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~-  186 (326)
T PRK06046        128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE-  186 (326)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-
Confidence            4578999999999999999998 45788888866552                   355555565554333 3343322 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNID  187 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~  187 (448)
                           +.++.+.  .|+|+.||-+..
T Consensus       187 -----~~~~~l~--aDiVv~aTps~~  205 (326)
T PRK06046        187 -----DIEEACD--CDILVTTTPSRK  205 (326)
T ss_pred             -----CHHHHhh--CCEEEEecCCCC
Confidence                 3455553  899999998743

>PRK07102 short chain dehydrogenase; Provisional

Probab=87.14  E-value=13  Score=35.13  Aligned_cols=32  Identities=25%  Similarity=0.407  Sum_probs=26.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.| .||+|..+++.|+..|. ++.++|.+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~   34 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARD   34 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCC
Confidence            4788887 59999999999999996 57777765

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=87.12  E-value=0.74  Score=47.02  Aligned_cols=32  Identities=34%  Similarity=0.432  Sum_probs=28.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCc------eEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D  117 (448)
                      ||.|+|+ |.||+.++..|+..|+-      .|.|+|-.
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~   39 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIP   39 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecC
Confidence            6999999 99999999999998886      59999863

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=87.05  E-value=0.84  Score=45.93  Aligned_cols=33  Identities=33%  Similarity=0.451  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+|.|||+|-.|+.+|.+|+..|. +++++|.+.
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~   35 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP   35 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence            369999999999999999999997 699998774

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=87.05  E-value=0.56  Score=52.80  Aligned_cols=33  Identities=21%  Similarity=0.389  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHH-HcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLL-RSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~La-rsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-.|+.+|..++ ++|+ .++|+|.+.
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~-~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGI-PVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCC-eEEEEeCCH
Confidence            47999999999999999998 5896 589999773

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06182 short chain dehydrogenase; Validated

Probab=87.04  E-value=2.4  Score=41.12  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=27.6

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~   36 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARR   36 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4678999986 8999999999999996 46665543

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=87.04  E-value=3.7  Score=48.29  Aligned_cols=97  Identities=16%  Similarity=0.110  Sum_probs=54.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++++|+|||.|..|-.+|..|++.|. +++|+|....--.-|+..+  ...-.++.-++...+.+.+.+  +++..-. .
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~-~VtV~E~~~~~GG~l~~gi--p~~rl~~e~~~~~~~~l~~~G--v~~~~~~-~  502 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGV-DVTVYEALHVVGGVLQYGI--PSFRLPRDIIDREVQRLVDIG--VKIETNK-V  502 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEecCCCCcceeeccC--CccCCCHHHHHHHHHHHHHCC--CEEEeCC-c
Confidence            46899999999999999999999997 6999986532111111110  111112222333444455443  4443321 1


Q ss_pred             CCcc-chHHHh-cCCCCeEEEccCC
Q 013180          163 YDAS-SEEEIL-SGHPDFVLDCIDN  185 (448)
Q Consensus       163 ~~~~-~~~~ll-~~~~D~VIda~Dn  185 (448)
                      +..+ ..+++. ...||.||-|+..
T Consensus       503 vg~~~~~~~l~~~~~yDaViIATGa  527 (1006)
T PRK12775        503 IGKTFTVPQLMNDKGFDAVFLGVGA  527 (1006)
T ss_pred             cCCccCHHHHhhccCCCEEEEecCC
Confidence            2222 234443 2349999998875

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=87.00  E-value=0.9  Score=48.72  Aligned_cols=37  Identities=35%  Similarity=0.575  Sum_probs=33.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .|.+++|+|+|+|.+|..+|+.|...|. +++++|.|.
T Consensus       251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp  287 (476)
T PTZ00075        251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP  287 (476)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence            4789999999999999999999999998 588877663

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=86.95  E-value=0.92  Score=45.23  Aligned_cols=33  Identities=33%  Similarity=0.487  Sum_probs=29.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-.|+.+|..|+.+|. +++++|.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~   37 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDP   37 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence            579999999999999999999995 688888653

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=86.94  E-value=0.74  Score=47.68  Aligned_cols=34  Identities=35%  Similarity=0.488  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ...|+|||+|-+|+.+|..|++.|+ +++|+|...
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence            3579999999999999999999997 589999775

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=86.87  E-value=0.87  Score=41.93  Aligned_cols=38  Identities=37%  Similarity=0.578  Sum_probs=29.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      -|..++++|+|.|-+|.-+|..|...| -++++.|-|.+
T Consensus        20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~G-a~V~V~e~DPi   57 (162)
T PF00670_consen   20 MLAGKRVVVIGYGKVGKGIARALRGLG-ARVTVTEIDPI   57 (162)
T ss_dssp             --TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred             eeCCCEEEEeCCCcccHHHHHHHhhCC-CEEEEEECChH
Confidence            577899999999999999999999999 56899888853

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=86.86  E-value=3.6  Score=48.27  Aligned_cols=35  Identities=31%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..++|+|||.|..|-.+|..|++.|. +++|+|...
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~-~VTV~Ek~~  570 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKE  570 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            35789999999999999999999996 699999754

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=86.80  E-value=4.1  Score=39.31  Aligned_cols=34  Identities=21%  Similarity=0.435  Sum_probs=28.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++++++++|.|+ ||+|..+++.|+..|.. +.++|
T Consensus         7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~   41 (265)
T PRK07097          7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFND   41 (265)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEe
Confidence            467788999976 79999999999999975 66654

>PRK12744 short chain dehydrogenase; Provisional

Probab=86.78  E-value=4.1  Score=39.07  Aligned_cols=33  Identities=21%  Similarity=0.360  Sum_probs=26.9

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEE
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~L  113 (448)
                      .|++++|+|.| .||+|..+++.|+..|...+.+
T Consensus         5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i   38 (257)
T PRK12744          5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI   38 (257)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence            46678999997 5799999999999999764433

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=86.78  E-value=0.88  Score=45.67  Aligned_cols=34  Identities=32%  Similarity=0.461  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ..+|.|||+|.+|..++..|.+.|. .++.++|.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~   40 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS   40 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3679999999999999999999997 478887764

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=86.77  E-value=2.6  Score=42.17  Aligned_cols=113  Identities=19%  Similarity=0.264  Sum_probs=62.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .+|.|||+|-+|+.++.+|++.|. +++++|.+.=....+..        .|...+....+.+.    .+++....-. +
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~--------~g~~~~~s~~~~~~----~aDvVi~~vp-~   67 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD--------KGATPAASPAQAAA----GAEFVITMLP-N   67 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH--------cCCcccCCHHHHHh----cCCEEEEecC-C
Confidence            379999999999999999999995 68888875332222211        12212222222221    2222222111 1


Q ss_pred             ccchHHH-------hc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          165 ASSEEEI-------LS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       165 ~~~~~~l-------l~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .......       +.  .+-.+|||++. ++.+...+.+.+.+.++.++++--.|+
T Consensus        68 ~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~  124 (296)
T PRK15461         68 GDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT  124 (296)
T ss_pred             HHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence            1111111       11  11346677665 455667777888888888888766554

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=86.77  E-value=4.2  Score=38.13  Aligned_cols=29  Identities=31%  Similarity=0.471  Sum_probs=24.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCce
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGR  110 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~  110 (448)
                      +..++|+|+|+ |++|+.+++.|+..|..-
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v   33 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGADV   33 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeE
Confidence            45678999975 999999999999999853

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=86.69  E-value=7.7  Score=39.58  Aligned_cols=35  Identities=40%  Similarity=0.550  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~  218 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDIN  218 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            46899999999999999998889998888887764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=86.65  E-value=4.2  Score=43.16  Aligned_cols=34  Identities=35%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus       139 ~~~~VvIIGgGpaGl~aA~~l~~~g~-~V~lie~~  172 (457)
T PRK11749        139 TGKKVAVIGAGPAGLTAAHRLARKGY-DVTIFEAR  172 (457)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence            46799999999999999999999995 69998865

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=86.63  E-value=2  Score=45.17  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=30.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+++|.|+|.|+.|-.++..|.+.|. +++..|.+
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~   38 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR   38 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            457889999999999999999999996 68888865

>TIGR02028 ChlP geranylgeranyl reductase

Probab=86.62  E-value=0.82  Score=47.69  Aligned_cols=31  Identities=32%  Similarity=0.497  Sum_probs=28.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|||+|..|+.+|..|++.|+. +.|+|..
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~   32 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK   32 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence            699999999999999999999975 8888854

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=86.58  E-value=0.81  Score=46.67  Aligned_cols=34  Identities=21%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCc------eEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D  117 (448)
                      -.||.|+|+ |.||+.+|..|+..|+-      +|.|+|-.
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~   42 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELP   42 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecC
Confidence            358999999 99999999999988874      59998763

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06841 short chain dehydrogenase; Provisional

Probab=86.51  E-value=1.1  Score=42.89  Aligned_cols=34  Identities=35%  Similarity=0.567  Sum_probs=29.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++|+|.|+ ||+|+++++.|+..|. ++.+++.
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r   47 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR   47 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            67899999996 9999999999999997 5777664

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=86.48  E-value=5.4  Score=40.70  Aligned_cols=35  Identities=37%  Similarity=0.550  Sum_probs=30.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~  221 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLN  221 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            46899999999999999999989998888777554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=86.39  E-value=1.8  Score=42.14  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++++.++|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~   43 (278)
T PRK08277          7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRN   43 (278)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367888999986 8999999999999998 58777654

>PRK05717 oxidoreductase; Validated

Probab=86.37  E-value=1.4  Score=42.28  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|. |++|+++++.|++.|. ++.++|.+
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~   43 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD   43 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence            356788999986 8999999999999995 68887654

>PRK08309 short chain dehydrogenase; Provisional

Probab=86.30  E-value=5.2  Score=37.14  Aligned_cols=101  Identities=21%  Similarity=0.248  Sum_probs=62.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-C
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-D  164 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-~  164 (448)
                      +++|.|..|.|..++..|+..|. ++.+++.+                   ..+++.+...+..  + -++..+...+ +
T Consensus         2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~-------------------~~~~~~l~~~l~~--~-~~i~~~~~Dv~d   58 (177)
T PRK08309          2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARR-------------------EVKLENVKRESTT--P-ESITPLPLDYHD   58 (177)
T ss_pred             EEEEECcCHHHHHHHHHHHHCcC-EEEEEECC-------------------HHHHHHHHHHhhc--C-CcEEEEEccCCC
Confidence            58999998999999999999996 46654432                   1122222222221  1 2344443333 3


Q ss_pred             ccchHHHh------cCCCCeEEEccCCHHHHHHHHHHHHHcCCc-----EEEEcCCC
Q 013180          165 ASSEEEIL------SGHPDFVLDCIDNIDTKVALLAACVRRGLK-----VLCATGAG  210 (448)
Q Consensus       165 ~~~~~~ll------~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip-----~I~~~g~G  210 (448)
                      .+....++      .+..|++|.++... ....+..+|.+.+++     +++-.|..
T Consensus        59 ~~sv~~~i~~~l~~~g~id~lv~~vh~~-~~~~~~~~~~~~gv~~~~~~~~h~~gs~  114 (177)
T PRK08309         59 DDALKLAIKSTIEKNGPFDLAVAWIHSS-AKDALSVVCRELDGSSETYRLFHVLGSA  114 (177)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEecccc-chhhHHHHHHHHccCCCCceEEEEeCCc
Confidence            33333332      13588999887664 567788999999988     88876654

>PRK06500 short chain dehydrogenase; Provisional

Probab=86.25  E-value=0.79  Score=43.48  Aligned_cols=36  Identities=25%  Similarity=0.505  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++++|+|.|+ |++|..+++.|+..|. ++.+++.+
T Consensus         3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~   39 (249)
T PRK06500          3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD   39 (249)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence            467789999987 9999999999999997 57776543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=86.25  E-value=1  Score=46.12  Aligned_cols=34  Identities=38%  Similarity=0.412  Sum_probs=30.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ..|+|||.|-.|..+|..|++.|+ +++|+|.+..
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence            479999999999999999999997 6999997754

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=86.21  E-value=3.4  Score=42.73  Aligned_cols=50  Identities=28%  Similarity=0.388  Sum_probs=36.0

Q ss_pred             EEEEcCChHHHHHHHHH--HHcCCceEEEEeCCccccCCCcccccccCCccCc
Q 013180           87 VVVIGLGGVGSHAAAML--LRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT  137 (448)
Q Consensus        87 VlVVG~GGvGs~va~~L--arsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~  137 (448)
                      |+|||+|-.|+.+|..|  ++.|. ++.|||...--.-.-++.-.+...+++.
T Consensus         2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~~~~~~~tW~~~~~~~~~   53 (374)
T PF05834_consen    2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKPPWPNDRTWCFWEKDLGP   53 (374)
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccccccCCcccccccccccc
Confidence            79999999999999999  77774 7999998755422333433444555555

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=86.16  E-value=4.4  Score=38.89  Aligned_cols=36  Identities=22%  Similarity=0.467  Sum_probs=29.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|++++|+|.|+ ||+|..+++.|+..|.. +.+++.+
T Consensus        12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~   48 (258)
T PRK06935         12 SLDGKVAIVTGGNTGLGQGYAVALAKAGAD-IIITTHG   48 (258)
T ss_pred             cCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCC
Confidence            477899999987 79999999999999975 5665443

>PRK08013 oxidoreductase; Provisional

Probab=86.12  E-value=0.95  Score=46.98  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +..|+|||+|-+|..+|..|++.|+. ++|+|...
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~-v~viE~~~   36 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLR-VAVLEQRV   36 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCE-EEEEeCCC
Confidence            46899999999999999999999975 89999765

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=86.05  E-value=6  Score=36.18  Aligned_cols=88  Identities=18%  Similarity=0.185  Sum_probs=56.4

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      +++|+|+|+.|-.++.+|-+.|..-+.++|.+.-    +.++.+....=+|.                           .
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~----~~~~~i~g~pvlg~---------------------------~   49 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPA----LQGTSVDGLPVLGG---------------------------D   49 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCcc----ccCcccCCccEECC---------------------------H
Confidence            5899999999999999999999988889987732    22222221111121                           0


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      +....+.. +.+.++-++.+...+..+.+.+...+.++..
T Consensus        50 ~~l~~~~~-~~~~~iiai~~~~~~~~i~~~l~~~g~~~~~   88 (201)
T TIGR03570        50 EDLLRYPP-DEVDLVVAIGDNKLRRRLFEKLKAKGYRFAT   88 (201)
T ss_pred             HHHhhhcc-cccEEEEEcCCHHHHHHHHHHHHhCCCcceE
Confidence            11111222 2466676776777788888888887776554

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>PRK06057 short chain dehydrogenase; Provisional

Probab=86.03  E-value=1.1  Score=42.98  Aligned_cols=36  Identities=28%  Similarity=0.510  Sum_probs=30.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++++|+|+|+ ||+|..+++.|+..|. ++.++|.+
T Consensus         4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~   40 (255)
T PRK06057          4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID   40 (255)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence            477899999998 9999999999999995 57776643

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=86.03  E-value=0.85  Score=47.33  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...|+|||+|-+|..+|..|++.|+. ++|+|..
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~   36 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ   36 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence            46899999999999999999999985 8999974

>PRK09126 hypothetical protein; Provisional

Probab=86.00  E-value=0.99  Score=46.35  Aligned_cols=35  Identities=31%  Similarity=0.428  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      +..|+|||+|-.|+.+|..|++.|+. ++|+|....
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence            56799999999999999999999985 889887654

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=85.93  E-value=4.7  Score=40.49  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             CHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180           75 GVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        75 G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~L  113 (448)
                      +....++++++-|+|-|| .|+|.++|..|++.|.+-+.+
T Consensus         3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lv   42 (282)
T KOG1205|consen    3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLV   42 (282)
T ss_pred             ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEe
Confidence            345678999999999999 599999999999999875554

>PLN02256 arogenate dehydrogenase

Probab=85.88  E-value=1.1  Score=45.20  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +-+..+|.|||+|.+|..++..|...|. ++..+|.+
T Consensus        33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~   68 (304)
T PLN02256         33 KSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRS   68 (304)
T ss_pred             cCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECc
Confidence            4466789999999999999999999984 67777754

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=85.81  E-value=0.97  Score=46.80  Aligned_cols=34  Identities=35%  Similarity=0.458  Sum_probs=30.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .+|+|||+|-.|..+|..|++.|+ +++|+|....
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence            569999999999999999999997 5999997653

>PRK06436 glycerate dehydrogenase; Provisional

Probab=85.81  E-value=0.69  Score=46.78  Aligned_cols=37  Identities=16%  Similarity=0.325  Sum_probs=31.8

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|.+++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~  154 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS  154 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            57999999999999999999998887787 57777653

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=85.69  E-value=1.1  Score=46.48  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc--CCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS--GVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars--GVg~i~LiD~D~  118 (448)
                      ..|+|||+|-+|+.+|..|++.  |. +++|+|...
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence            5799999999999999999998  74 799999864

>PRK07236 hypothetical protein; Provisional

Probab=85.67  E-value=1  Score=46.45  Aligned_cols=36  Identities=33%  Similarity=0.342  Sum_probs=31.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +...+|+|||+|-.|..+|..|++.|+. ++|+|...
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~   39 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP   39 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence            4567899999999999999999999985 89988653

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=85.67  E-value=0.99  Score=46.54  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...|+|||.|-+|..+|..|++.|+ +++|+|..
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~   35 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGG   35 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCC
Confidence            3579999999999999999999997 69999965

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=85.56  E-value=1.9  Score=41.66  Aligned_cols=34  Identities=26%  Similarity=0.490  Sum_probs=28.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++++|.|+ ||+|..+++.|++.|. ++.++|.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r   37 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK   37 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence            56889999987 7899999999999996 4777664

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]

Probab=85.49  E-value=5  Score=39.55  Aligned_cols=94  Identities=16%  Similarity=0.145  Sum_probs=64.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ..+|+|+|--+=+-.+++-|...+ +-+++                .+..+-|.       +...++.|    .....+.
T Consensus         2 ~~~ilvlGGT~Dar~la~~L~~~~-~~~~~----------------ss~t~~g~-------~l~~~~~~----~~~~G~l   53 (257)
T COG2099           2 MMRILLLGGTSDARALAKKLAAAP-VDIIL----------------SSLTGYGA-------KLAEQIGP----VRVGGFL   53 (257)
T ss_pred             CceEEEEeccHHHHHHHHHhhccC-ccEEE----------------EEcccccc-------cchhccCC----eeecCcC
Confidence            457999998888999999999888 33333                12223332       11222233    3344566


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHHH--HHHHHHHcCCcEEE
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKVA--LLAACVRRGLKVLC  205 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~--l~~~c~~~~ip~I~  205 (448)
                      +.+....++. .+.|+|||++..++++.-  ..+.|++.|+|++-
T Consensus        54 ~~e~l~~~l~e~~i~llIDATHPyAa~iS~Na~~aake~gipy~r   98 (257)
T COG2099          54 GAEGLAAFLREEGIDLLIDATHPYAARISQNAARAAKETGIPYLR   98 (257)
T ss_pred             CHHHHHHHHHHcCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEE
Confidence            7777766664 369999999999998874  45899999999987

>PRK08862 short chain dehydrogenase; Provisional

Probab=85.45  E-value=4.7  Score=38.45  Aligned_cols=33  Identities=21%  Similarity=0.412  Sum_probs=27.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++++.++|.|+ +|+|..+++.|+..|.. +.+++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~-V~~~~   36 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGAT-LILCD   36 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCE-EEEEc
Confidence            56788999986 57999999999999974 66654

>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]

Probab=85.44  E-value=5.7  Score=42.50  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=35.9

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      +-++.++|.|-|+|++|.+.++.|.+.|-.-|.|.|.+-+
T Consensus       247 ~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~  286 (514)
T KOG2250|consen  247 KGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGV  286 (514)
T ss_pred             CCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCcee
Confidence            5678999999999999999999999999988888887754

>PRK07060 short chain dehydrogenase; Provisional

Probab=85.33  E-value=1.3  Score=41.80  Aligned_cols=35  Identities=31%  Similarity=0.526  Sum_probs=30.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++++|.|+ |++|..+++.|++.|. ++.+++.+
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~   42 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN   42 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66789999998 8999999999999997 58887743

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=85.32  E-value=1.1  Score=44.61  Aligned_cols=30  Identities=27%  Similarity=0.440  Sum_probs=26.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|+|+|+|++|+.+|..|+++|. ++++++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence            69999999999999999999984 5888765

>PRK08655 prephenate dehydrogenase; Provisional

Probab=85.28  E-value=2.6  Score=44.76  Aligned_cols=31  Identities=29%  Similarity=0.559  Sum_probs=27.0

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|.||| +|++|+.++..|...|. +++++|.+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~   33 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD   33 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            699997 89999999999999995 68887754

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=85.27  E-value=1.2  Score=47.38  Aligned_cols=32  Identities=41%  Similarity=0.491  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|+|||+|-+|+++|..|++.|+ +++|++..
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~r   32 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEMR   32 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCC-cEEEEecc
Confidence            379999999999999999999996 58888853

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=85.25  E-value=2.3  Score=40.81  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             hhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.|+|.|++   |+|..+++.|+..|. ++.+++..
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~   40 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS   40 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence            567889999995   799999999999996 78887654

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=85.23  E-value=5.3  Score=38.42  Aligned_cols=30  Identities=30%  Similarity=0.484  Sum_probs=25.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|+|.|+ ||+|..+++.|+..|. ++.++|.
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r   32 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSR   32 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeC
Confidence            6888876 8999999999999997 5777654

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=85.21  E-value=3.3  Score=43.84  Aligned_cols=94  Identities=23%  Similarity=0.268  Sum_probs=50.5

Q ss_pred             cEEEEcCChHHHHHHH--HHH---HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           86 YVVVIGLGGVGSHAAA--MLL---RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~--~La---rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +|.|||+|++|+..+.  .++   .....++.|+|.|.=.   +...            ...+.+.+....+..+|....
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~---l~~~------------~~~~~~~~~~~~~~~~I~~tt   66 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEER---LETV------------EILAKKIVEELGAPLKIEATT   66 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHH---HHHH------------HHHHHHHHHhcCCCeEEEEeC
Confidence            6999999999998666  354   2222589998865311   1110            011123333344445554322


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHH--HHHHHcCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALL--AACVRRGL  201 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~--~~c~~~~i  201 (448)
                            +..+.+.+ .|+||.++-....+....  +...++++
T Consensus        67 ------D~~eal~~-AD~Vi~ai~~~~~~~~~~de~i~~K~g~  102 (423)
T cd05297          67 ------DRREALDG-ADFVINTIQVGGHEYTETDFEIPEKYGY  102 (423)
T ss_pred             ------CHHHHhcC-CCEEEEeeEecCccchhhhhhhHHHcCe
Confidence                  23345555 999999986433222222  35555554

linked to 3D####ucture

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=85.21  E-value=2.8  Score=40.52  Aligned_cols=36  Identities=22%  Similarity=0.469  Sum_probs=30.3

Q ss_pred             HHhhCCcEEEEcC---ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL---GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~---GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++.++|.|+   +|+|.++|+.|++.|. ++.+.|.
T Consensus         3 ~~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r   41 (256)
T PRK07889          3 GLLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF   41 (256)
T ss_pred             ccccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence            3477889999996   7999999999999997 4777664

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=85.21  E-value=1.2  Score=43.07  Aligned_cols=33  Identities=39%  Similarity=0.575  Sum_probs=29.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .|+|||+|-.|..+|..|++.|+ +++|+|.+..
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~   34 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF   34 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence            58999999999999999999998 5999998754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK07832 short chain dehydrogenase; Provisional

Probab=85.20  E-value=4.8  Score=39.06  Aligned_cols=30  Identities=33%  Similarity=0.469  Sum_probs=24.6

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++|.| .||+|.++++.|++.|.. +.+++.
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~-vv~~~r   32 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAE-LFLTDR   32 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            578887 589999999999999964 777653

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=85.19  E-value=3.6  Score=38.33  Aligned_cols=69  Identities=12%  Similarity=0.081  Sum_probs=53.1

Q ss_pred             HHHHHHHHhhhCCCceEEEEeccCCccchHH----HhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          140 ALCLKKHFSSIFPECHIDAKVLLYDASSEEE----ILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       140 v~~~~~~l~~inP~v~v~~~~~~~~~~~~~~----ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      ++.+++++++.+|.++|..+...++++..++    +-..++|+|+.+...++-...+.+.....+.+++.+.|
T Consensus        61 ~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~VglG~PkQE~~~~~~~~~~~~~v~~gvG  133 (177)
T TIGR00696        61 LQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVFVGLGCPKQEIWMRNHRHLKPDAVMIGVG  133 (177)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEEEEcCCcHhHHHHHHhHHhCCCcEEEEec
Confidence            5788999999999999988755665543333    33346999999999999999888887777777766533

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=85.18  E-value=4  Score=41.78  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|.|+|++|..++..+...|.. +.++|.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~-vi~~~~  215 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLK-VTVISS  215 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            467999999999999999998899975 555553

>PRK12831 putative oxidoreductase; Provisional

Probab=85.17  E-value=5.3  Score=42.69  Aligned_cols=34  Identities=29%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..++|+|||.|..|..+|..|++.|. +++|+|..
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~-~V~v~e~~  172 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGY-DVTIFEAL  172 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCC-eEEEEecC
Confidence            57899999999999999999999997 58998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
1jwb_B	249	Structure Of The Covalent Acyl-Adenylate Form Of Th		7e-11
1zud_1	251	Structure Of This-Thif Protein Complex Length = 251		1e-10
1zfn_A	253	Structural Analysis Of Escherichia Coli Thif Length		1e-10
3cmm_A	1015	Crystal Structure Of The Uba1-Ubiquitin Complex Len		2e-05

>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The Moeb-Moad Protein Complex Length = 249

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
           F  + Q+ +  S V+++GLGG+G  A+              DFD VS+S+L R  + + A
Sbjct: 21  FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA 80
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
            VG PK    +   + I P   I     L D +    +++ H D VLDC DN+  +  L 
Sbjct: 81  TVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEH-DLVLDCTDNVAVRNQLN 139
Query: 194 AACVRRGLKVLCATGAGAR 212
           A C     KV   +GA  R
Sbjct: 140 AGCF--AAKVPLVSGAAIR 156

>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex Length = 251

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
             ++ QQK+  S V++IGLGG+G+ AA              D D V +S+L R  + T  
Sbjct: 18  IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTE 77
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
           D+  PK+   ++  + + P+  + A        + ++ ++   D VLDC DN+ T+  + 
Sbjct: 78  DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEIN 136
Query: 194 AACVRRGLKVLCATGAG 210
           AACV     ++ A+  G
Sbjct: 137 AACVALNTPLITASAVG 153

>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif Length = 253

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMXXXXXXXXXXXXDFDQVSVSSLNRHAVATRA 133
             ++ QQK+  S V++IGLGG+G+ AA              D D V +S+L R  + T  
Sbjct: 20  IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTE 79
Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
           D+  PK+   ++  + + P+  + A        + ++ ++   D VLDC DN+ T+  + 
Sbjct: 80  DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVA-RADVVLDCTDNMATRQEIN 138
Query: 194 AACVRRGLKVLCATGAG 210
           AACV     ++ A+  G
Sbjct: 139 AACVALNTPLITASAVG 155

>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex Length = 1015

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 79/185 (42%), Gaps = 12/185 (6%)
Query: 63  VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSH-----AAAMXXXXXXXXXXXXDFD 117
           V  +    I  FG++ Q+K++ S V ++G G +G       A               D D
Sbjct: 404 VNSRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDND 463
Query: 118 QVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC--HIDAKVLLYDASSEE---EIL 172
            +  S+LNR  +    DVG  K+    +   ++ P+    I+AK+      +EE   +  
Sbjct: 464 SIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSF 523
Query: 173 SGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRI--RVADLRESTNDP 230
               DFV + +DN+D +  +   CV     +L +   G + +   I  R+ +   S+ DP
Sbjct: 524 WESLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLTESYSSSRDP 583
Query: 231 LSRAV 235
             +++
Sbjct: 584 PEKSI 588

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	2e-27
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	4e-27
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	2e-26
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	2e-26
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	7e-22
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	1e-21
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	4e-21
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	6e-20
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	2e-14
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	2e-19
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	3e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	1e-13
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	3e-10
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	1e-05

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* Length = 249

 Score =  108 bits (273), Expect = 2e-27
 Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
           F  + Q+ +  S V+++GLGG+G  A+  L  +GVG L L+DFD VS+S+L R  + + A
Sbjct: 21  FDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA 80

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
            VG PK    +   + I P   I     L D +    +++ H D VLDC DN+  +  L 
Sbjct: 81  TVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAEH-DLVLDCTDNVAVRNQLN 139

Query: 194 AACVRRG 200
           A C    
Sbjct: 140 AGCFAAK 146

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A Length = 251

 Score =  107 bits (271), Expect = 4e-27
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
             ++ QQK+  S V++IGLGG+G+ AA  L  +GVG L+L D D V +S+L R  + T  
Sbjct: 18  IALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTE 77

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL 193
           D+  PK+   ++  + + P+  + A        + ++ ++   D VLDC DN+ T+  + 
Sbjct: 78  DIDRPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVARA-DVVLDCTDNMATRQEIN 136

Query: 194 AACVRRG 200
           AACV   
Sbjct: 137 AACVALN 143

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* Length = 292

 Score =  107 bits (269), Expect = 2e-26
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 18/140 (12%)

Query: 75  GVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR--HAVATR 132
            V   +K+    V ++G+GGVGS  A ML R G+G+LLL D+D+V ++++NR        
Sbjct: 27  IVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFF---QP 83

Query: 133 ADVGTPKALCLKKHFSSIFPECHIDA------------KVLLYDASSEEEILSGHPDFVL 180
              G  K    +    +I P+   +               +   ++   E      D VL
Sbjct: 84  HQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPV-DLVL 142

Query: 181 DCIDNIDTKVALLAACVRRG 200
            C+DN + ++ +  AC   G
Sbjct: 143 SCVDNFEARMTINTACNELG 162

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A Length = 353

 Score =  108 bits (271), Expect = 2e-26
 Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 2/128 (1%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
             V  Q K+  + VV++G GG+G+H + +L  SG+G ++L+D DQ+  ++L R  + +  
Sbjct: 108 NPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSED 167

Query: 134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNI-DTKVAL 192
           DVG  K   +K+       E  +    L  +  ++   +    D  +   D+  +    +
Sbjct: 168 DVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEA-DIWVVSADHPFNLINWV 226

Query: 193 LAACVRRG 200
              CVR  
Sbjct: 227 NKYCVRAN 234

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* Length = 340

 Score = 95.1 bits (237), Expect = 7e-22
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 79  QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP 138
              +  + V+++G G +G + +  L+  GV ++  VD   VS S+  R A+    D G P
Sbjct: 29  LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 88

Query: 139 KALCLKKHFSSIFPECHIDAKVLLY---------------DASSEEEILSGHPDFVLDCI 183
           KA         IFP        L                 D      ++  H D +   +
Sbjct: 89  KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEH-DIIFLLV 147

Query: 184 DNIDTKVALLAACVRRG 200
           D+ +++           
Sbjct: 148 DSRESRWLPSLLSNIEN 164

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A Length = 598

 Score = 96.4 bits (240), Expect = 1e-21
 Identities = 27/137 (19%), Positives = 48/137 (35%), Gaps = 16/137 (11%)

Query: 79  QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP 138
              +  + V+++G G +G + +  L+  GV ++  VD   VS S+  R A+    D G P
Sbjct: 322 LDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKP 381

Query: 139 KALCLKKHFSSIFPECHIDAKVLLY---------------DASSEEEILSGHPDFVLDCI 183
           KA         IFP        L                 D      ++  H D +   +
Sbjct: 382 KAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEH-DIIFLLV 440

Query: 184 DNIDTKVALLAACVRRG 200
           D+ +++           
Sbjct: 441 DSRESRWLPSLLSNIEN 457

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A Length = 640

 Score = 95.2 bits (236), Expect = 4e-21
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 2/128 (1%)

Query: 71  IQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVA 130
            +    E  + V+G  V+V+G GG+G      L+ +G   + L+D D + VS+LNR  + 
Sbjct: 4   SRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLF 63

Query: 131 TRADVGTPKALCLKKHFSSIFPECHIDAKVL-LYDASSEEEILSGHPDFVLDCIDNIDTK 189
            +  VG  KA   K+     +P+ +I A    + +     E        V++ +DN   +
Sbjct: 64  QKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQF-ILVMNALDNRAAR 122

Query: 190 VALLAACV 197
             +   C+
Sbjct: 123 NHVNRMCL 130

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 91.8 bits (227), Expect = 6e-20
 Identities = 29/151 (19%), Positives = 64/151 (42%), Gaps = 4/151 (2%)

Query: 60  DEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV 119
            E+     +R +   G E+  K+  S V+++GL G+G   A  ++ +GV  + + D + V
Sbjct: 3   GEIDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPV 62

Query: 120 SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFV 179
            ++ L+     T  D+G  +    +   + +     ++      D+  +   LS     V
Sbjct: 63  QLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNV----LDSLDDVTQLSQFQVVV 118

Query: 180 LDCIDNIDTKVALLAACVRRGLKVLCATGAG 210
                +++ KV +   C   G++ + +   G
Sbjct: 119 ATDTVSLEDKVKINEFCHSSGIRFISSETRG 149

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} Length = 1015

 Score = 74.5 bits (182), Expect = 2e-14
 Identities = 40/207 (19%), Positives = 76/207 (36%), Gaps = 13/207 (6%)

Query: 17  AVLGSVSTVFLYKLLSRNIARSHSKNVPNCMT---HNGIPALDLLKDEVVAEQLTRNIQF 73
           A  G +    + K  S            + +           +    + V  +    I  
Sbjct: 355 AFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPKNFPRNEKTTQPVNSRYDNQIAV 414

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHA 128
           FG++ Q+K++ S V ++G G +G          G+     G +++ D D +  S+LNR  
Sbjct: 415 FGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQF 474

Query: 129 VATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHP-----DFVLDCI 183
           +    DVG  K+    +   ++ P+        +     E E +         DFV + +
Sbjct: 475 LFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWESLDFVTNAL 534

Query: 184 DNIDTKVALLAACVRRGLKVLCATGAG 210
           DN+D +  +   CV     +L +   G
Sbjct: 535 DNVDARTYVDRRCVFYRKPLLESGTLG 561

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* Length = 346

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 4/160 (2%)

Query: 47  MTHNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRS 106
           M         + ++E  A Q  R I+ +G+E+Q+++  S V+++GL G+G+  A  L+ +
Sbjct: 1   MVEKEEAGGGISEEE--AAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILA 58

Query: 107 GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDAS 166
           GV  L ++D +QV+        +     VG  +A    +   ++ P   +       +  
Sbjct: 59  GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIE-K 117

Query: 167 SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA 206
             E   +   D V     + D  V +   C +  +K    
Sbjct: 118 KPESFFTQF-DAVCLTCCSRDVIVKVDQICHKNSIKFFTG 156

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* Length = 434

 Score = 79.6 bits (196), Expect = 3e-16
 Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 74  FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA 133
                Q  +    V+VIG GG+G      L  SG  ++ ++D D + VS+LNR  +    
Sbjct: 30  STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPK 89

Query: 134 DVGTPKALCLKKHFSSIFPECHIDA---KVLLYDASSEEEILSGHPDFVLDCIDNIDTKV 190
           D+G PKA    +  +   P C++     K+  ++    +         ++  +D+I  + 
Sbjct: 90  DIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFN----DTFYRQF-HIIVCGLDSIIARR 144

Query: 191 ALLAACV 197
            +    +
Sbjct: 145 WINGMLI 151

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 73.0 bits (178), Expect = 8e-14
 Identities = 65/481 (13%), Positives = 140/481 (29%), Gaps = 121/481 (25%)

Query: 48  THNGIPALDLLKDEVVAEQLTRNIQFFGVESQQKV-SGSYVVVIGLGGVG-SHAAAMLLR 105
            +N        K  V   Q    ++    ++  ++     V++ G+ G G +  A  +  
Sbjct: 119 LYNDNQVFA--KYNVSRLQPYLKLR----QALLELRPAKNVLIDGVLGSGKTWVALDVCL 172

Query: 106 SGVGRLLLVDFDQV---SVSSLNRHAVATRADVGTPKALC--LKKHFSSIFPECHIDAKV 160
           S   ++      ++   ++ + N         +   + L   +  +++S   +   + K+
Sbjct: 173 SY--KVQCKMDFKIFWLNLKNCNS----PETVLEMLQKLLYQIDPNWTSR-SDHSSNIKL 225

Query: 161 LLYDASSEEEILSGHPDFV--LDCIDNI-DTKV--ALLAACVRRGLKVLCATGAGARAD- 214
            ++   +E   L     +   L  + N+ + K   A   +C     K+L  T      D 
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC-----KILLTTRFKQVTDF 280

Query: 215 -----PTRIRVADLRESTNDPLSRAVMHRLRKDYGIE---------GGIPVVFSL----- 255
                 T I +     +      +++   L K                 P   S+     
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL---LLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 256 -EKP----------KAKLLPFTGPSGEDENPSD----YQMVPGFR--VRI-IPVLG---- 293
            +              KL      S     P++    +  +  F     I   +L     
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 294 -SIPAIFGMVMASHVVTQLAERQVQTEPIVNMDV--------DHYRLLHQRLTEHEESLY 344
             I +   +V+       L E+Q +   I    +        ++   LH+ + +H    Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH----Y 453

Query: 345 GTAKEVQVD----VEEVMYVAKELWH-GRSAWEHSAKDVGRGMWRSVNELML-VRWDREK 398
              K    D         Y      H G     H               + L  R+  +K
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFY---SHIGH----HLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 399 ----------PATVSNLV--LLKFK----EADEHESRTLDDIKEKEPAFFERVTSVLKRA 442
                       ++ N +  L  +K    + D    R ++ I +    F  ++   L  +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD----FLPKIEENLICS 562

Query: 443 E 443
           +
Sbjct: 563 K 563

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 44/323 (13%), Positives = 91/323 (28%), Gaps = 78/323 (24%)

Query: 155 HIDAKVLLYDASSEEEILSGHPDFV--LDCIDNID-TKVALLAACVRRGLKVLCATGAGA 211
           H+D +   +    ++ +      FV   DC D  D  K  L    +   +       +  
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM------SKD 59

Query: 212 RADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGE 271
               T      L     + + + V   LR +Y         F +   K +      PS  
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--------FLMSPIKTE---QRQPSMM 108

Query: 272 DENPSDYQ---------MVPGFRVRIIPVL-----------GSIPAIFGM------VMA- 304
                + +                R+ P L                I G+       +A 
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 305 ----SHVVTQLAERQV---------QTEPIVNMDVDHYRLLHQRLTEHEESLYGTAKEVQ 351
               S+ V    + ++           E ++ M       +    T   +     +  ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH----SSNIK 224

Query: 352 VDVEEVMYVAKELWHGRSAWEHS---AKDV-GRGMWRSVNE----LMLVRW----DREKP 399
           + +  +    + L   +  +E+      +V     W + N     L+  R+    D    
Sbjct: 225 LRIHSIQAELRRLLKSKP-YENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 400 ATVSNLVLLKFKEA-DEHESRTL 421
           AT +++ L          E ++L
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSL 306

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* Length = 531

 Score = 71.7 bits (175), Expect = 1e-13
 Identities = 26/148 (17%), Positives = 53/148 (35%), Gaps = 11/148 (7%)

Query: 69  RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA 128
           R ++ +G   Q+ +  ++V +I     G+     L+  G+G   ++D +QVS      + 
Sbjct: 17  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 76

Query: 129 VATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDF------VLDC 182
              R+ +G  +A    +    +  +          + S  E +L   P F      V+  
Sbjct: 77  FLQRSSIGKNRAEAAMEFLQELNSDVSGSF----VEESP-ENLLDNDPSFFCRFTVVVAT 131

Query: 183 IDNIDTKVALLAACVRRGLKVLCATGAG 210
                T + L        + +L     G
Sbjct: 132 QLPESTSLRLADVLWNSQIPLLICRTYG 159

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Length = 805

 Score = 61.5 bits (149), Expect = 3e-10
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 69  RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA 128
            + +      Q  +    V+VIG GG+G      L  SG  ++ ++D D + VS+LNR  
Sbjct: 396 PDFEPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQF 455

Query: 129 VATRADVGTPKALCLKKHFSSIFPECHIDA---KVLLYDASSEEEILSGHPDFVLDCIDN 185
           +    D+G PKA    +  +   P C++     K+  ++ +   +        ++  +D+
Sbjct: 456 LFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQF-----HIIVCGLDS 510

Query: 186 ID 187
           I 
Sbjct: 511 II 512

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATR-ADVGTPKAL 141
           + V+G G +G   AA+L  S    + + D D  +++ LNR  VAT+  D      L
Sbjct: 8   ICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGL 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	100.0
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	100.0
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	100.0
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	100.0
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	100.0
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	100.0
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	100.0
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	100.0
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	100.0
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	100.0
2nvu_B	805	Maltose binding protein/NEDD8-activating enzyme E1	100.0
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	99.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.03
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.95
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.93
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.73
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.72
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	97.72
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.68
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.54
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.47
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.35
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	97.25
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.22
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.19
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.18
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.13
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.04
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.96
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.95
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.91
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.86
3c85_A	183	Putative glutathione-regulated potassium-efflux S	96.84
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.8
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.71
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	96.66
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.63
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.6
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.59
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.57
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.54
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.46
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.3
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.3
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.25
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.25
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.18
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.05
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.04
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.04
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.99
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.98
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.98
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.98
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.94
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.93
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.9
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.89
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	95.88
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.85
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.85
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.84
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.8
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.74
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.72
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	95.71
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.7
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	95.69
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	95.69
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	95.68
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.65
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.6
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.54
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.5
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	95.49
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.48
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	95.46
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.44
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	95.44
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.43
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.38
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.37
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.28
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.27
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	95.25
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	95.16
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.14
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.13
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	95.12
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	95.09
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.08
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	95.01
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	95.01
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.0
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	95.0
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	94.97
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	94.96
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	94.9
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	94.89
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	94.89
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.86
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	94.86
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	94.86
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	94.83
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	94.8
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	94.79
1xq1_A	266	Putative tropinone reducatse; structural genomics,	94.78
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.78
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	94.77
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.76
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	94.75
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	94.7
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	94.66
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	94.66
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.63
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	94.59
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.58
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.57
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.55
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.55
1spx_A	278	Short-chain reductase family member (5L265); paral	94.54
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	94.48
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.47
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	94.46
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	94.45
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.43
4ea9_A	220	Perosamine N-acetyltransferase; beta helix, acetyl	94.42
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	94.41
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	94.41
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	94.38
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	94.38
4ezb_A	317	Uncharacterized conserved protein; structural geno	94.37
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	94.36
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	94.34
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	94.29
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	94.26
1xq6_A	253	Unknown protein; structural genomics, protein stru	94.26
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.21
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.11
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	94.09
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	94.07
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.06
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.05
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	94.03
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.02
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	94.0
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	93.99
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	93.98
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	93.96
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	93.93
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	93.92
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	93.92
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	93.91
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	93.9
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.89
1gq2_A	555	Malic enzyme; oxidoreductase, pigeon liver, NADP-d	93.89
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	93.88
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.88
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	93.87
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	93.85
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	93.79
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.74
1o0s_A	605	NAD-ME, NAD-dependent malic enzyme; oxidoreductase	93.74
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	93.72
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	93.71
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	93.7
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	93.7
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.69
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	93.68
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	93.67
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	93.61
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	93.55
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	93.55
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	93.54
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	93.53
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	93.51
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.5
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	93.49
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	93.49
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	93.49
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	93.46
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	93.46
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	93.44
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	93.39
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	93.39
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.37
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	93.36
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	93.36
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	93.35
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	93.34
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	93.34
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	93.33
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	93.33
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	93.32
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	93.31
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	93.3
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	93.3
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.27
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	93.22
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	93.22
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	93.17
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	93.17
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	93.16
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	93.13
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.13
4hb9_A	412	Similarities with probable monooxygenase; flavin,	93.12
1pj3_A	564	NAD-dependent malic enzyme, mitochondrial; oxidati	93.1
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	93.09
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	93.07
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	93.06
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	93.05
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	93.05
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	93.02
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	93.02
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	93.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	92.98
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	92.98
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	92.95
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	92.95
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	92.92
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	92.91
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	92.89
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	92.88
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.88
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	92.87
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	92.87
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.87
3rih_A	293	Short chain dehydrogenase or reductase; structural	92.87
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	92.83
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	92.79
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	92.77
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.77
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.77
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	92.77
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	92.76
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	92.75
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	92.74
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	92.73
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	92.73
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	92.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.7
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	92.68
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	92.64
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	92.63
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.63
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	92.63
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	92.62
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	92.62
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	92.61
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.61
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	92.61
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	92.6
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.6
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	92.57
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	92.56
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.56
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	92.53
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	92.52
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	92.5
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	92.5
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	92.48
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	92.47
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.44
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	92.43
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	92.42
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	92.4
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	92.4
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.4
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	92.39
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	92.39
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	92.38
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	92.37
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	92.36
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.36
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	92.32
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	92.32
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	92.32
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	92.3
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	92.27
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	92.27
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	92.26
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	92.24
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	92.24
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	92.21
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	92.2
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	92.2
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	92.19
3imf_A	257	Short chain dehydrogenase; structural genomics, in	92.17
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	92.17
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	92.16
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	92.14
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	92.14
3qha_A	296	Putative oxidoreductase; seattle structural genomi	92.13
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	92.13
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.12
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	92.12
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	92.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	92.09
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.07
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	92.02
1lnq_A	336	MTHK channels, potassium channel related protein;	92.01
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	92.01
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.99
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.99
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.99
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	91.98
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	91.98
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	91.95
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.93
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	91.93
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	91.93
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	91.91
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	91.9
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	91.89
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	91.88
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	91.87
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	91.84
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	91.83
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	91.79
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	91.79
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	91.78
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.75
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.74
4f6c_A	427	AUSA reductase domain protein; thioester reductase	91.69
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.69
3l07_A	285	Bifunctional protein fold; structural genomics, ID	91.68
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.67
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	91.66
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	91.64
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	91.64
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	91.62
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	91.62
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	91.62
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	91.6
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	91.59
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	91.59
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	91.58
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.57
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	91.56
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	91.55
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	91.5
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	91.48
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	91.46
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	91.46
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	91.45
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	91.43
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	91.38
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	91.38
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	91.37
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	91.34
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	91.34
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	91.34
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.33
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	91.28
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	91.22
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.18
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.15
2duw_A	145	Putative COA-binding protein; ligand binding prote	91.12
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	91.12
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	91.08
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.07
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	91.07
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	91.01
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	91.0
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	91.0
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	90.98
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	90.98
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	90.96
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	90.96
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	90.95
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	90.94
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	90.93
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.9
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	90.9
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.87
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	90.84
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	90.84
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	90.78
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	90.77
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	90.73
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	90.71
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	90.71
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	90.71
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	90.69
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	90.68
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	90.65
4had_A	350	Probable oxidoreductase protein; structural genomi	90.63
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	90.6
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	90.59
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	90.53
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	90.53
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	90.52
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	90.5
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	90.49
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	90.48
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	90.47
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	90.47
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	90.47
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	90.47
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	90.39
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.39
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	90.37
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	90.35
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	90.35
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	90.35
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	90.31
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	90.31
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.26
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	90.25
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	90.25
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	90.25
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	90.25
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	90.2
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	90.07
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.07
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	90.05
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	90.05
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	90.02
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	90.0
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	89.99
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.98
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	89.97
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	89.96
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	89.93
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	89.88
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	89.87
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	89.87
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	89.87
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	89.85
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	89.84
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	89.81
2cul_A	232	Glucose-inhibited division protein A-related PROT	89.75
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	89.69
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	89.68
3dme_A	369	Conserved exported protein; structural genomics, P	89.66
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	89.66
1xkq_A	280	Short-chain reductase family member (5D234); parra	89.66
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	89.63
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	89.6
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	89.6
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	89.56
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	89.56
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	89.54
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	89.53
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	89.52
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	89.51
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	89.47
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	89.45
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	89.45
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	89.44
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	89.42
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	89.41
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	89.38
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	89.37
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	89.33
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	89.31
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	89.31
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	89.29
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	89.26
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	89.26
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	89.25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	89.24
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	89.23
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	89.22
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	89.19
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	89.17
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	89.17
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	89.14
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	89.12
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	89.09
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	89.07
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	89.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	88.94
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.88
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	88.87
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	88.85
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	88.84
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	88.72
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	88.71
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	88.69
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	88.68
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	88.66
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	88.65
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	88.57
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	88.55
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	88.54
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	88.5
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	88.5
1xhl_A	297	Short-chain dehydrogenase/reductase family member	88.49
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	88.47
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	88.47
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	88.45
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	88.44
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	88.44
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	88.43
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	88.42
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	88.41

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=100.00  E-value=1.7e-42  Score=343.33  Aligned_cols=208  Identities=21%  Similarity=0.332  Sum_probs=153.3

Q ss_pred             HhhhhHhh--cCH-HHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180           66 QLTRNIQF--FGV-ESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC  142 (448)
Q Consensus        66 ~~~Rq~~~--~G~-~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~  142 (448)
                      -|+||+.+  ||. ++|+||++++|+|||+||+||+++++|+++|||+|+|+|+|.|++||||||+ |+.+|||++|+++
T Consensus        15 ~y~r~i~L~~~G~~~~q~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~-~~~~diG~~Ka~a   93 (292)
T 3h8v_A           15 VPRGSMALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLF-FQPHQAGLSKVQA   93 (292)
T ss_dssp             -----------------CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC-------------CCTTSBHHHH
T ss_pred             CchHhhcccccChHHHHHHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhccccc-CChhhcCchHHHH
Confidence            58999986  998 9999999999999999999999999999999999999999999999999996 6889999999999


Q ss_pred             HHHHHhhhCCCceEEEEeccCCc-cchHHHhc----------CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          143 LKKHFSSIFPECHIDAKVLLYDA-SSEEEILS----------GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       143 ~~~~l~~inP~v~v~~~~~~~~~-~~~~~ll~----------~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ++++|+++||+++|+++...++. ++.++++.          .++|+||||+||+++|+.||++|+++++|+|+++..| 
T Consensus        94 a~~~L~~iNP~v~v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~-  172 (292)
T 3h8v_A           94 AEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSE-  172 (292)
T ss_dssp             HHHHHHHHCTTSEEEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECT-
T ss_pred             HHHHHHhhCCCcEEEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeec-
Confidence            99999999999999999998886 56666652          3599999999999999999999999999999987543 


Q ss_pred             ccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCC-
Q 013180          212 RADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIP-  290 (448)
Q Consensus       212 k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-  290 (448)
                                                     .++.|++.++.+.++||++|+ ++.....  .+.      .-++...+ 
T Consensus       173 -------------------------------~~~~Gqv~~~~pg~t~Cy~Cl-~p~~~~~--~~~------~~~~~~~gv  212 (292)
T 3h8v_A          173 -------------------------------NAVSGHIQLIIPGESACFACA-PPLVVAA--NID------EKTLKREGV  212 (292)
T ss_dssp             -------------------------------TSSEEEEEEECTTTSCCTTSS-SCCCCCC--C-------------CHHH
T ss_pred             -------------------------------ceeEEEEEEECCCCCCCHhhc-CCccccc--ccc------ccchhhcCc
Confidence                                           245688888888889999998 3321100  000      01122333 


Q ss_pred             ---cccchHHHHHHHHHHHHHHHHHcCC
Q 013180          291 ---VLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       291 ---vlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                         ++||+++++|+++|+|+||+|+|.+
T Consensus       213 c~~~l~~~~g~vgslqA~EalK~L~g~g  240 (292)
T 3h8v_A          213 CAASLPTTMGVVAGILVQNVLKFLLNFG  240 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHhCCC
Confidence               4899999999999999999999976

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=100.00  E-value=9.9e-42  Score=331.56  Aligned_cols=208  Identities=27%  Similarity=0.447  Sum_probs=179.8

Q ss_pred             hhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC
Q 013180           59 KDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG  136 (448)
Q Consensus        59 ~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG  136 (448)
                      ++|.  +||+||+++  ||.++|++|++++|+|+|+||+||+++++|+++|||+|+|+|+|.|+++|||||++++.+|||
T Consensus         3 ~~e~--~ry~Rq~~l~~~g~~~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG   80 (251)
T 1zud_1            3 DRDF--MRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDID   80 (251)
T ss_dssp             HHHH--HHTHHHHTSTTTHHHHHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTT
T ss_pred             HHHH--HHhhhhcchhhcCHHHHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCC
Confidence            4554  899999999  999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          137 TPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                      ++|+++++++++++||.++|+++...++.++..+++.+ +|+||+|+||+.++..++++|+++++|+|+++..       
T Consensus        81 ~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~-~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~-------  152 (251)
T 1zud_1           81 RPKSQVSQQRLTQLNPDIQLTALQQRLTGEALKDAVAR-ADVVLDCTDNMATRQEINAACVALNTPLITASAV-------  152 (251)
T ss_dssp             SBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHH-CSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEE-------
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc-------
Confidence            99999999999999999999999988888888888875 9999999999999999999999999999998753       


Q ss_pred             ceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccch
Q 013180          217 RIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSI  295 (448)
Q Consensus       217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~  295 (448)
                                                 |+.|++.++.+.+ .||+.|+ ++...  ..         ...+...++++|+
T Consensus       153 ---------------------------g~~G~v~~~~p~~~~~c~~cl-~~~~~--~~---------~~~~~~~g~~~p~  193 (251)
T 1zud_1          153 ---------------------------GFGGQLMVLTPPWEQGCYRCL-WPDNQ--EP---------ERNCRTAGVVGPV  193 (251)
T ss_dssp             ---------------------------BTEEEEEEECTTCTTCCHHHH-CC----------------------CCBCHHH
T ss_pred             ---------------------------ccceEEEEEccCCCCCcEEEe-CCCCC--CC---------CCccccCCchHHH
Confidence                                       4456555555555 6899887 33211  00         1124566899999


Q ss_pred             HHHHHHHHHHHHHHHHHcCC
Q 013180          296 PAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       296 ~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ++++|+++|+|+|+.|+|.+
T Consensus       194 ~~~~g~~~A~e~lk~l~g~~  213 (251)
T 1zud_1          194 VGVMGTLQALEAIKLLSGIE  213 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999975

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=100.00  E-value=8.4e-41  Score=324.56  Aligned_cols=210  Identities=28%  Similarity=0.460  Sum_probs=181.7

Q ss_pred             cchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCc
Q 013180           57 LLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD  134 (448)
Q Consensus        57 ~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d  134 (448)
                      +.++|+  +||+||+++  ||.++|++|++++|+|||+||+|++++++|+++||++|+|+|.|.|++||||||++++.+|
T Consensus         4 l~~~e~--~ry~Rq~~l~~~g~~~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~d   81 (249)
T 1jw9_B            4 LSDQEM--LRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDAT   81 (249)
T ss_dssp             CCHHHH--HHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGG
T ss_pred             CCHHHH--HHhhheecccccCHHHHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhh
Confidence            566676  899999999  9999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180          135 VGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD  214 (448)
Q Consensus       135 vG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d  214 (448)
                      ||++|++++++++.++||.++++++...++.++..+++.+ +|+||+|+||++++..++++|++.++|+|+++..     
T Consensus        82 iG~~Ka~~~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~-~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~-----  155 (249)
T 1jw9_B           82 VGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAE-HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAI-----  155 (249)
T ss_dssp             TTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHT-SSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEE-----
T ss_pred             cCcHHHHHHHHHHHHHCCCcEEEEEeccCCHhHHHHHHhC-CCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeec-----
Confidence            9999999999999999999999999888887777778875 9999999999999999999999999999998653     


Q ss_pred             CCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCC-CCcccCCCCCCCCCCCCCCCCCCccCCcccccCCccc
Q 013180          215 PTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLE-KPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLG  293 (448)
Q Consensus       215 pt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg  293 (448)
                                                   |+.|++.++.+.+ .||+.|+ ++..+  ..         ...+...|++|
T Consensus       156 -----------------------------g~~g~v~~~~p~~~~~c~~c~-~~~~~--~~---------~~~c~~~g~~~  194 (249)
T 1jw9_B          156 -----------------------------RMEGQITVFTYQDGEPCYRCL-SRLFG--EN---------ALTCVEAGVMA  194 (249)
T ss_dssp             -----------------------------BTEEEEEEECCCTTCCCTHHH-HTTCC--C----------------CCBCH
T ss_pred             -----------------------------cceEEEEEEeCCCCCCceEEE-CCCCC--cc---------cccccccCCcc
Confidence                                         4445555555555 5898887 43221  00         11345679999


Q ss_pred             chHHHHHHHHHHHHHHHHHcCC
Q 013180          294 SIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       294 ~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      |+++++|+++|+|+|+.|+|.+
T Consensus       195 ~~~~~~g~~~a~e~lk~l~g~~  216 (249)
T 1jw9_B          195 PLIGVIGSLQAMEAIKMLAGYG  216 (249)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCS
T ss_pred             hHHHHHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999975

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=100.00  E-value=2.4e-38  Score=321.16  Aligned_cols=153  Identities=22%  Similarity=0.330  Sum_probs=141.7

Q ss_pred             ccchhHHHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCcc
Q 013180           56 DLLKDEVVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADV  135 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dv  135 (448)
                      .+.+++.  ++|+||+++||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+++||+||++++.+||
T Consensus        10 ~l~~~~~--~rY~Rq~~l~G~~~q~~L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~di   87 (346)
T 1y8q_A           10 GISEEEA--AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSV   87 (346)
T ss_dssp             CCCHHHH--HHHHHHHHHHCHHHHHHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCT
T ss_pred             cCCHHHH--HHHHHHHHhhCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccC
Confidence            3555554  89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc
Q 013180          136 GTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR  212 (448)
Q Consensus       136 G~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k  212 (448)
                      |++|+++++++|+++||.++|+++...++. +..+++.+ +|+||+|+||++++..|+++|+++++|+|+++..|..
T Consensus        88 G~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~-~~~~~~~~-~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G~~  162 (346)
T 1y8q_A           88 GRNRAEASLERAQNLNPMVDVKVDTEDIEK-KPESFFTQ-FDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYH  162 (346)
T ss_dssp             TSBHHHHHHHHHHHTCTTSEEEEECSCGGG-CCHHHHTT-CSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEBTE
T ss_pred             cCCHHHHHHHHHHhHCCCeEEEEEecccCc-chHHHhcC-CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecccE
Confidence            999999999999999999999999887765 44677775 9999999999999999999999999999998766653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=100.00  E-value=2.8e-37  Score=310.99  Aligned_cols=202  Identities=18%  Similarity=0.207  Sum_probs=165.6

Q ss_pred             hHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           70 NIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        70 q~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ..++|++.++++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+.+|+|++|++++++++++
T Consensus        20 ~wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~   99 (340)
T 3rui_A           20 KWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKR   99 (340)
T ss_dssp             HHHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHH
T ss_pred             HHhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHH
Confidence            35678888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCceEEEEeccC---------------CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC
Q 013180          150 IFPECHIDAKVLLY---------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD  214 (448)
Q Consensus       150 inP~v~v~~~~~~~---------------~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d  214 (448)
                      +||.++++++...+               +.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++ .     
T Consensus       100 inP~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~-~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa-~-----  172 (340)
T 3rui_A          100 IFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE-HDIIFLLVDSRESRWLPSLLSNIENKTVINAA-L-----  172 (340)
T ss_dssp             HCTTCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHH-CSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE-E-----
T ss_pred             hCCCCEEEEEeccccccCcccchhhhhcCCHHHHHhhhcc-CCEEEecCCCHHHHHHHHHHHHHcCCcEEEee-e-----
Confidence            99999999987543               33455677775 99999999999999999999999999999964 3     


Q ss_pred             CCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEe-------CCCCCcccCCCCCCCCCCCCCCCCCCccCCcccc
Q 013180          215 PTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVF-------SLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVR  287 (448)
Q Consensus       215 pt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~-------s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (448)
                                                   |+.|++.+..       +.+.|||.|++...+...  .. +.. . +   .
T Consensus       173 -----------------------------G~~G~l~v~~g~~~~~~~~~~~Cy~C~~~~~p~~~--~~-~~t-~-~---~  215 (340)
T 3rui_A          173 -----------------------------GFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS--LT-DRT-L-D---Q  215 (340)
T ss_dssp             -----------------------------CSSEEEEEECCCCCSSCCCCBCCGGGGSSSCCCCC--TT-TCC-C-G---G
T ss_pred             -----------------------------cceEEEEEeecccccCCCCCCCeeeeCCCCCCccc--cc-ccc-c-C---C
Confidence                                         4445553321       246789999832111100  00 000 0 0   1


Q ss_pred             cCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          288 IIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       288 ~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      ...|+||+++++|+++|.|+|+.|+|.+
T Consensus       216 ~c~v~~p~vg~igs~qA~E~lk~l~~~~  243 (340)
T 3rui_A          216 MSTVTRPGVAMMASSLAVELMTSLLQTK  243 (340)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CcceecchHHHHHHHHHHHHHHHHhCCC
Confidence            1249999999999999999999999987

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=100.00  E-value=7.3e-36  Score=318.60  Aligned_cols=208  Identities=17%  Similarity=0.188  Sum_probs=168.0

Q ss_pred             HHHhhhhHhh-------cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC
Q 013180           64 AEQLTRNIQF-------FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG  136 (448)
Q Consensus        64 ~e~~~Rq~~~-------~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG  136 (448)
                      ..+|+|++.+       +++.+|++|++++|+||||||+||++|++|+++|||+|+|+|+|.|+.|||+||++++.+|||
T Consensus       300 la~~~~~lnL~lmrwrll~~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG  379 (598)
T 3vh1_A          300 IADQSVDLNLKLMKWRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCG  379 (598)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCS
T ss_pred             HHHHHHhhhhhhhhhhccchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcC
Confidence            3678877764       677889999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhhCCCceEEEEeccC---------------CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCC
Q 013180          137 TPKALCLKKHFSSIFPECHIDAKVLLY---------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGL  201 (448)
Q Consensus       137 ~~Kv~~~~~~l~~inP~v~v~~~~~~~---------------~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~i  201 (448)
                      ++||++++++|+++||.++|+++...+               +.++..+++.+ +|+||||+||+++|..++++|+++++
T Consensus       380 ~~KAeaaa~~L~~iNP~v~v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~-~DvVvdatDn~~tR~lin~~c~~~~~  458 (598)
T 3vh1_A          380 KPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE-HDIIFLLVDSRESRWLPSLLSNIENK  458 (598)
T ss_dssp             SBHHHHHHHHHHHHCTTCEEEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHH-CSEEEECCSBGGGTHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHhHCCCcEEEEEeccccccCcccccccccccCHHHHHHHHhc-CCEEEECCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999988654               23455677775 99999999999999999999999999


Q ss_pred             cEEEEcCCCCccCCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEe---C----CCCCcccCC-CCCCCCCCCC
Q 013180          202 KVLCATGAGARADPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVF---S----LEKPKAKLL-PFTGPSGEDE  273 (448)
Q Consensus       202 p~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~---s----~e~p~~~~~-~~~~~~~~~~  273 (448)
                      |+|++ +.                                  |+.|++.++.   +    ...||+.|+ |.....   .
T Consensus       459 plI~a-a~----------------------------------G~~Gqv~v~~g~~p~~~~~~~~Cy~Cl~~~~p~~---~  500 (598)
T 3vh1_A          459 TVINA-AL----------------------------------GFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTD---S  500 (598)
T ss_dssp             EEEEE-EE----------------------------------CSSEEEEEEEC--------CBCCTTTSCSSCSSS---C
T ss_pred             CEEEE-EE----------------------------------CCccEEEEEccCCCccCCCCCCceeecCccCCCc---c
Confidence            99985 33                                  3334443221   1    246899987 221110   0


Q ss_pred             CCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCCC
Q 013180          274 NPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQV  316 (448)
Q Consensus       274 ~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~~  316 (448)
                      .. +...  +   ...+|+||+++++|+++|.|+|+.|+|.+.
T Consensus       501 ~~-~~tl--d---~~C~Vl~p~vgvigslqA~Ealk~Llg~~~  537 (598)
T 3vh1_A          501 LT-DRTL--D---QMCTVTRPGVAMMASSLAVELMTSLLQTKY  537 (598)
T ss_dssp             TT-TTTT--T---BSCCCSCTHHHHHHHHHHHHHHHHHHSCCC
T ss_pred             cc-cccc--C---CCCCccCcHHHHHHHHHHHHHHHHHhCCCc
Confidence            00 0000  0   112589999999999999999999999863

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=100.00  E-value=9.1e-36  Score=318.01  Aligned_cols=200  Identities=18%  Similarity=0.197  Sum_probs=164.2

Q ss_pred             hhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           72 QFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        72 ~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      +++++.++++|++++|+||||||+||++|++|+++|||+|+|+|+|.|+.|||+||++++.+|||++|+++++++|+++|
T Consensus       314 Rllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN  393 (615)
T 4gsl_A          314 RILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF  393 (615)
T ss_dssp             HTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred             hhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeccC---------------CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          152 PECHIDAKVLLY---------------DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       152 P~v~v~~~~~~~---------------~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                      |.++|+++...+               +.++..+++.+ +|+||||+||+++|..++++|+++++|+|+++ .       
T Consensus       394 P~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~-~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa-l-------  464 (615)
T 4gsl_A          394 PLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKE-HDIIFLLVDSRESRWLPSLLSNIENKTVINAA-L-------  464 (615)
T ss_dssp             TTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHH-CSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE-E-------
T ss_pred             CCcEEEEeeccccccCccccchhhhcCCHHHHHHHhhc-CCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE-c-------
Confidence            999999987533               33456677775 99999999999999999999999999999964 3       


Q ss_pred             ceEEcccccccCChhhHHHHHHHhhhcCccCCeeEEe-------CCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccC
Q 013180          217 RIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVF-------SLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRII  289 (448)
Q Consensus       217 ~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~-------s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (448)
                                                 |+.|++.+..       +.+.|||.|+....+...  ... . .. +.   ..
T Consensus       465 ---------------------------G~~Gql~v~~g~~~~~~~~~~~CY~Cl~~~~P~~~--~~~-r-tl-~~---~C  509 (615)
T 4gsl_A          465 ---------------------------GFDSYLVMRHGNRDEQSSKQLGCYFCHDVVAPTDS--LTD-R-TL-DQ---MC  509 (615)
T ss_dssp             ---------------------------CSSEEEEEECCC------CCCCCTTTSCSSCTTSC--TTT-T-TT-TC---TT
T ss_pred             ---------------------------cceeEEEEeecccccCCCCCCCceeeCCCCCCccc--ccc-c-cc-cc---Cc
Confidence                                       3445443321       246799999832111100  000 0 00 01   12


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          290 PVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       290 pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      .|+||++|++|+++|.|+|+.|+|.+
T Consensus       510 ~Vl~P~vgiigs~qA~EaLk~Ll~~g  535 (615)
T 4gsl_A          510 TVTRPGVAMMASSLAVELMTSLLQTK  535 (615)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ceecchHHHHHHHHHHHHHHHHhCCC
Confidence            49999999999999999999999987

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=100.00  E-value=1.7e-36  Score=322.90  Aligned_cols=205  Identities=13%  Similarity=0.144  Sum_probs=166.3

Q ss_pred             HHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHH
Q 013180           65 EQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK  144 (448)
Q Consensus        65 e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~  144 (448)
                      +||+||+++||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++||++++
T Consensus        13 ~rY~Rqi~l~G~~~q~~L~~~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~   92 (531)
T 1tt5_A           13 QKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAM   92 (531)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHCEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHH
T ss_pred             HHhhHHHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhCCCceEEEEeccCCc--cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcc
Q 013180          145 KHFSSIFPECHIDAKVLLYDA--SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVAD  222 (448)
Q Consensus       145 ~~l~~inP~v~v~~~~~~~~~--~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~d  222 (448)
                      ++|+++||+++|+++...++.  ++..+++.+ +|+||+|+||++++..++++|+++++|+|+++..|.           
T Consensus        93 ~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~-~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~G~-----------  160 (531)
T 1tt5_A           93 EFLQELNSDVSGSFVEESPENLLDNDPSFFCR-FTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL-----------  160 (531)
T ss_dssp             HHHHTTCTTSBCCEESSCHHHHHHSCGGGGGG-CSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEETT-----------
T ss_pred             HHHHHhCCCCeEEEeCCCcchhhhhhHHHhcC-CCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEecCC-----------
Confidence            999999999999998876654  344567775 999999999999999999999999999999976443           


Q ss_pred             cccccCChhhHHHHHHHhhhcCccCCeeEEeCC----------CCCcccCC-CCCCCCCCCCCCCCCCccCCcc--cccC
Q 013180          223 LRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSL----------EKPKAKLL-PFTGPSGEDENPSDYQMVPGFR--VRII  289 (448)
Q Consensus       223 i~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~----------e~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~  289 (448)
                                             .|++.+.++.          ..+|++|+ |++...         ...+.+.  --..
T Consensus       161 -----------------------~G~v~~~~p~~~~~d~~~~~~~~~lr~~~p~P~~~---------~~~~~~~~~~~~~  208 (531)
T 1tt5_A          161 -----------------------VGYMRIIIKEHPVIESHPDNALEDLRLDKPFPELR---------EHFQSYDLDHMEK  208 (531)
T ss_dssp             -----------------------EEEEEEECSCEEESCCCCSSCCCCCCSSSCCHHHH---------HHHHTCC------
T ss_pred             -----------------------eEEEEEEcCCceeccCCCCCCCCcccccCCCCCch---------hhhhccCcccccC
Confidence                                   3333333321          13455554 222110         0001110  0124


Q ss_pred             CcccchHHHHHHHHHHHHHHHHHc
Q 013180          290 PVLGSIPAIFGMVMASHVVTQLAE  313 (448)
Q Consensus       290 pvlg~~~~i~G~~~A~~vi~~l~g  313 (448)
                      +++|++|+++|++.|.+++|.+.+
T Consensus       209 ~~~~~~p~vv~~~~ale~~k~~~~  232 (531)
T 1tt5_A          209 KDHSHTPWIVIIAKYLAQWYSETN  232 (531)
T ss_dssp             -CGGGSCHHHHHHHHHHHHTTTTC
T ss_pred             CCcCCchHHHHHHHHHHHHHHhcC
Confidence            788999999999999999988764

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=100.00  E-value=5.5e-35  Score=314.93  Aligned_cols=198  Identities=22%  Similarity=0.298  Sum_probs=168.4

Q ss_pred             hHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           70 NIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        70 q~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      |+++||.++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.||||||++|+.+|||++|++++++++++
T Consensus         3 qi~l~G~e~Q~kL~~s~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~   82 (640)
T 1y8q_B            3 LSRGLPRELAEAVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQ   82 (640)
T ss_dssp             ---CCCHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHT
T ss_pred             hhhhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCceEEEEeccCCccc-hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccC
Q 013180          150 IFPECHIDAKVLLYDASS-EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTN  228 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~-~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~  228 (448)
                      +||+++|+++...++.++ ..+++.+ +|+||+|+||+.+|..++++|+++++|+|+++.                    
T Consensus        83 iNP~v~V~a~~~~i~~~~~~~~~~~~-~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~--------------------  141 (640)
T 1y8q_B           83 FYPKANIVAYHDSIMNPDYNVEFFRQ-FILVMNALDNRAARNHVNRMCLAADVPLIESGT--------------------  141 (640)
T ss_dssp             TCTTCEEEEEESCTTSTTSCHHHHTT-CSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEE--------------------
T ss_pred             HCCCCeEEEEecccchhhhhHhhhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEE--------------------
Confidence            999999999999887655 3567765 999999999999999999999999999999864                    


Q ss_pred             ChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHH
Q 013180          229 DPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVV  308 (448)
Q Consensus       229 dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi  308 (448)
                                    .|+.|++.++++..+||+.|++.+.+          ..+|.|..+..|.    +.+....+|.+++
T Consensus       142 --------------~G~~G~v~vi~p~~t~Cy~C~~~p~~----------~~~p~Cti~~~p~----~~~hci~~a~~~f  193 (640)
T 1y8q_B          142 --------------AGYLGQVTTIKKGVTECYECHPKPTQ----------RTFPGATIRNTPS----EPIHCIVWAKYLF  193 (640)
T ss_dssp             --------------ETTEEEEEEECTTTSCCTTSSCCCCC----------CCCCTTTTTSCCC----SHHHHHHHHHHHH
T ss_pred             --------------ecccceEEEECCCCCCCcccCCCCCC----------cccceeeecCCCC----chHHHHHHHHHHH
Confidence                          45567777888888999999853321          1345565554454    2333334799999


Q ss_pred             HHHHcCCC
Q 013180          309 TQLAERQV  316 (448)
Q Consensus       309 ~~l~g~~~  316 (448)
                      +.|+|.+.
T Consensus       194 ~~lf~~~~  201 (640)
T 1y8q_B          194 NQLFGEED  201 (640)
T ss_dssp             HHHHSCCC
T ss_pred             HHHhCCcc
Confidence            99999763

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=100.00  E-value=2.2e-35  Score=307.17  Aligned_cols=153  Identities=21%  Similarity=0.299  Sum_probs=137.9

Q ss_pred             CHHHHH-HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           75 GVESQQ-KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        75 G~~~q~-kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      |.+.++ .|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.|||+||++|+.+|||++|+++++++++++||+
T Consensus        30 g~e~~~~~L~~~~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~  109 (434)
T 1tt5_B           30 STESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN  109 (434)
T ss_dssp             CSSHHHHHHHTCCEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHhcCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC
Confidence            445565 5599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc------------CCcEEEEcCCCCccCCCceEEc
Q 013180          154 CHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR------------GLKVLCATGAGARADPTRIRVA  221 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~------------~ip~I~~~g~G~k~dpt~i~i~  221 (448)
                      ++|+++...++..+ .+++.+ +|+||||+||+++|++||++|++.            ++|+|+++.             
T Consensus       110 v~v~~~~~~i~~~~-~~~~~~-~DlVi~~~Dn~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~~~-------------  174 (434)
T 1tt5_B          110 CNVVPHFNKIQDFN-DTFYRQ-FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGT-------------  174 (434)
T ss_dssp             CCCEEEESCGGGBC-HHHHTT-CSEEEECCSCHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEEEE-------------
T ss_pred             CEEEEEecccchhh-HHHhcC-CCEEEECCCCHHHHHHHHHHHHHhhhccccccccccCCcEEEecc-------------
Confidence            99999998887765 467775 999999999999999999999984            999999875             


Q ss_pred             ccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC
Q 013180          222 DLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL  263 (448)
Q Consensus       222 di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~  263 (448)
                                           .|+.|++.++++..+||++|+
T Consensus       175 ---------------------~g~~G~v~v~~p~~t~Cy~C~  195 (434)
T 1tt5_B          175 ---------------------EGFKGNARVILPGMTACIECT  195 (434)
T ss_dssp             ---------------------ETTEEEEEEECTTTSCCGGGG
T ss_pred             ---------------------ccceeEEEEECCCCCCCcccc
Confidence                                 456677777777778999886

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-34  Score=324.90  Aligned_cols=248  Identities=20%  Similarity=0.267  Sum_probs=191.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccc-ccccC---CCCCCCCCCCCCCccccchhHH--HHHHhhhhHhhcCHHHHHHhhCCcEE
Q 013180           15 TGAVLGSVSTVFLYKLLSRNI-ARSHS---KNVPNCMTHNGIPALDLLKDEV--VAEQLTRNIQFFGVESQQKVSGSYVV   88 (448)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~e~--~~e~~~Rq~~~~G~~~q~kL~~~~Vl   88 (448)
                      ..|++|.+.++-+-+..++.- +...-   ....+.+...   ...+.+++.  ..+||+||+++||.++|++|++++|+
T Consensus       353 vaA~iGGivAQEVIKaiT~kf~Pi~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~Ry~rq~~l~G~~~q~kL~~~~Vl  429 (1015)
T 3cmm_A          353 VVAFFGGLVAQEVLKACSGKFTPLKQFMYFDSLESLPDPK---NFPRNEKTTQPVNSRYDNQIAVFGLDFQKKIANSKVF  429 (1015)
T ss_dssp             HHHHHHHHHHHHHHHHHHCBSCCCCSEEEEECGGGSCCTT---TSCCSTTTTSCCSSTTHHHHHHHCHHHHHHHHTCEEE
T ss_pred             HHHHhcchHHHHHHHHhccCCCcccceEEecchhhccccc---cCCCChhhccchhhhhhhHHHhcCHHHHHHHhcCeEE
Confidence            468999999999887666542 21110   0011111000   001112211  23799999999999999999999999


Q ss_pred             EEcCChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc--eEEEEec
Q 013180           89 VIGLGGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC--HIDAKVL  161 (448)
Q Consensus        89 VVG~GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v--~v~~~~~  161 (448)
                      ||||||+||+++++|+++||     |+|+|+|+|.|+.||||||++|+.+|||++|+++++++++++||++  +|+++..
T Consensus       430 vVGaGGlGsevlk~La~~Gv~~g~~G~i~lvD~D~Ve~SNLnRQ~lf~~~dvG~~Ka~~aa~~l~~iNP~v~~~v~~~~~  509 (1015)
T 3cmm_A          430 LVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKID  509 (1015)
T ss_dssp             EECCSHHHHHHHHHHHHHTTTCSTTCEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCGGGTTTEEEECC
T ss_pred             EEecCHHHHHHHHHHHHcCcCcCCCCeEEEEeCCEeccccccccccCChhhCCCHHHHHHHHHHHHHCCCCcceEEEEec
Confidence            99999999999999999999     9999999999999999999999999999999999999999999999  9999999


Q ss_pred             cCCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEcccccccCChhhHHHHH
Q 013180          162 LYDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADLRESTNDPLSRAVMH  237 (448)
Q Consensus       162 ~~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di~~~~~dpl~~~~r~  237 (448)
                      .++.++.    .+++.+ +|+||||+||+++|.+++++|+.+++|+|+++..                            
T Consensus       510 ~i~~~~~~~~~~~~~~~-~D~Vi~a~Dn~~aR~~ln~~c~~~~~Pli~~g~~----------------------------  560 (1015)
T 3cmm_A          510 KVGPETEEIFNDSFWES-LDFVTNALDNVDARTYVDRRCVFYRKPLLESGTL----------------------------  560 (1015)
T ss_dssp             CCSGGGTTTSCHHHHHH-CSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEE----------------------------
T ss_pred             ccCchhhhhccHhhhcc-CCEEEECCCCHHHHHHHHHHHHHcCCcEEEeCCC----------------------------
Confidence            9987765    466665 9999999999999999999999999999998864                            


Q ss_pred             HHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcC
Q 013180          238 RLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAER  314 (448)
Q Consensus       238 ~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~  314 (448)
                            |+.|++.++.+..++|+.|.+-+.   +       ..+|.|.++..|.    .......+|.+....+++.
T Consensus       561 ------G~~G~v~v~~p~~t~cy~c~~dp~---~-------~~~P~Ctl~~~P~----~~~h~i~wa~~~f~~lf~~  617 (1015)
T 3cmm_A          561 ------GTKGNTQVIIPRLTESYSSSRDPP---E-------KSIPLCTLRSFPN----KIDHTIAWAKSLFQGYFTD  617 (1015)
T ss_dssp             ------TTEEEEEEECTTTBCCGGGSCCCC---C-------CCCCHHHHHTCCC----SHHHHHHHHHHHHHHHHTH
T ss_pred             ------ccccceEEEeCCCCCccCCCCCCC---C-------CCCCcccccCCCC----CcHHHHHHHHHHHHHHHhh
Confidence                  445666677777889999874221   1       1345566665565    2334444667776666664

>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1

Probab=100.00  E-value=6.1e-34  Score=317.40  Aligned_cols=155  Identities=21%  Similarity=0.276  Sum_probs=142.5

Q ss_pred             hcCHHHHHHh-hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           73 FFGVESQQKV-SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        73 ~~G~~~q~kL-~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      .+|.++|+++ ++++|+||||||+||+++++|+++|||+|+|+|+|.|++|||+||++++.+|||++|+++++++|+++|
T Consensus       399 ~~g~~~~~~~l~~~~vlvvG~GglG~~~~~~L~~~Gvg~i~l~D~d~v~~snl~rq~~~~~~~vg~~Ka~~~~~~l~~~n  478 (805)
T 2nvu_B          399 EPSTESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRV  478 (805)
T ss_dssp             CCCSHHHHHHHHTCCEEEECCSSHHHHHHHHHHTTTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCcEEEECCCeecccccccccccchhhcCChHHHHHHHHHHHHC
Confidence            4689999988 999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc------------CCcEEEEcCCCCccCCCceE
Q 013180          152 PECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR------------GLKVLCATGAGARADPTRIR  219 (448)
Q Consensus       152 P~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~------------~ip~I~~~g~G~k~dpt~i~  219 (448)
                      |.++|+++...++..+ .+++.+ +|+||||+||+++|..||++|+..            ++|+|+++.           
T Consensus       479 p~~~v~~~~~~~~~~~-~~~~~~-~d~vv~~~d~~~~r~~in~~~~~~~~~~~g~~~~~~~~p~i~~~~-----------  545 (805)
T 2nvu_B          479 PNCNVVPHFNKIQDFN-DTFYRQ-FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGT-----------  545 (805)
T ss_dssp             TTCEEEEEESCGGGSC-HHHHHT-CSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEE-----------
T ss_pred             CCCEEEEEeccccccH-HHHHhc-CCEEEECCCCHHHHHHHHHHHHHHhhccccccccccCCcEEEecc-----------
Confidence            9999999999888766 477775 999999999999999999999984            999999875           


Q ss_pred             EcccccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCC
Q 013180          220 VADLRESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLL  263 (448)
Q Consensus       220 i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~  263 (448)
                                             .|+.|++.++++..+||++|+
T Consensus       546 -----------------------~g~~G~~~~~~p~~~~c~~c~  566 (805)
T 2nvu_B          546 -----------------------EGFKGNARVILPGMTACIECT  566 (805)
T ss_dssp             -----------------------ETTEEEEEEECTTTSCCTTTS
T ss_pred             -----------------------ccCceeEEEECCCCCCceecc
Confidence                                   456677777777778898886

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-31  Score=299.87  Aligned_cols=145  Identities=20%  Similarity=0.330  Sum_probs=136.3

Q ss_pred             HHHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHH
Q 013180           62 VVAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKAL  141 (448)
Q Consensus        62 ~~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~  141 (448)
                      +..++|+||+++||.++|++|++++|+||||||+||++|++|+++|||+|+|+|+|.|+++||+||++++.+|||++||+
T Consensus         5 id~~rY~Rqi~l~G~~~q~rL~~s~VlIvG~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~   84 (1015)
T 3cmm_A            5 IDESLYSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGD   84 (1015)
T ss_dssp             CCHHHHHHHHHHSCHHHHHHHTTCEEEEECCSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHH
T ss_pred             hhhHhccchHhhcCHHHHHHHhcCEEEEECCChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHH
Confidence            34479999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          142 CLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       142 ~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +++++|+++||+++|+++...+++    +++.+ +|+||||+| |+.++..|+++|+++++|+|+++..|.
T Consensus        85 a~~~~L~~lNP~v~v~~~~~~l~~----~~l~~-~DvVv~~~d~~~~~r~~ln~~c~~~~iplI~~~~~G~  150 (1015)
T 3cmm_A           85 VTRAKLAELNAYVPVNVLDSLDDV----TQLSQ-FQVVVATDTVSLEDKVKINEFCHSSGIRFISSETRGL  150 (1015)
T ss_dssp             HHHHHHTTSCTTSCEEECCCCCCS----TTGGG-CSEEEECTTSCHHHHHHHHHHHHHHTCEEEEEEEETT
T ss_pred             HHHHHHHHHCCCCeEEEecCCCCH----HHHhc-CCEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEEeccc
Confidence            999999999999999999887765    35554 999999999 999999999999999999999986654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.03  E-value=4.4e-05  Score=62.93  Aligned_cols=95  Identities=20%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .++|+|+|+|++|+.++..|...|..+++++|.+.                   .|.+.+.      .+.+.+.  ...+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~-------------------~~~~~~~------~~~~~~~--~~d~   57 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL-------------------AALAVLN------RMGVATK--QVDA   57 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH-------------------HHHHHHH------TTTCEEE--ECCT
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH-------------------HHHHHHH------hCCCcEE--EecC
Confidence            46899999999999999999999977899987641                   1222221      2333332  2222


Q ss_pred             -CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          164 -DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       164 -~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                       +.+...+.+.+ +|+||+|+.. .....+.+.|.+.+++++...
T Consensus        58 ~~~~~~~~~~~~-~d~vi~~~~~-~~~~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           58 KDEAGLAKALGG-FDAVISAAPF-FLTPIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             TCHHHHHHHTTT-CSEEEECSCG-GGHHHHHHHHHHTTCEEECCC
T ss_pred             CCHHHHHHHHcC-CCEEEECCCc-hhhHHHHHHHHHhCCCEEEec
Confidence             33445566664 9999999954 445778889999999998744

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.95  E-value=2.1e-05  Score=74.63  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=81.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|...+..|..+|. ++++||++.-.                  .   +++.. + ...  ++.+.
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~------------------~---l~~l~-~-~~~--i~~i~   81 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSA------------------E---INEWE-A-KGQ--LRVKR   81 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCH------------------H---HHHHH-H-TTS--CEEEC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCH------------------H---HHHHH-H-cCC--cEEEE
Confidence            5889999999999999999999999996 69999875210                  1   11111 1 122  33334


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC--CCCccCCCceEEccc-----ccccCChhhH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG--AGARADPTRIRVADL-----RESTNDPLSR  233 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g--~G~k~dpt~i~i~di-----~~~~~dpl~~  233 (448)
                      ..+.++    .+.+ +|+||-|+|+......+.+.|+ .++|+-.+..  .+...-|..++-+++     +....+-+++
T Consensus        82 ~~~~~~----dL~~-adLVIaAT~d~~~N~~I~~~ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~  155 (223)
T 3dfz_A           82 KKVGEE----DLLN-VFFIVVATNDQAVNKFVKQHIK-NDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTK  155 (223)
T ss_dssp             SCCCGG----GSSS-CSEEEECCCCTHHHHHHHHHSC-TTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHH
T ss_pred             CCCCHh----HhCC-CCEEEECCCCHHHHHHHHHHHh-CCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHH
Confidence            444433    3444 9999999999999999999998 9998644321  122233544333332     2233445566


Q ss_pred             HHHHHHhh
Q 013180          234 AVMHRLRK  241 (448)
Q Consensus       234 ~~r~~l~~  241 (448)
                      .+|++|..
T Consensus       156 ~iR~~ie~  163 (223)
T 3dfz_A          156 RIKEDLSS  163 (223)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666654

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.93  E-value=2e-05  Score=77.33  Aligned_cols=80  Identities=26%  Similarity=0.364  Sum_probs=64.4

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|+|+|+||+|..++..|+..|+++|+|++.+                   ..|++.+++.+...+|.+++....
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~-------------------~~~a~~la~~~~~~~~~~~i~~~~  184 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLD-------------------TSRAQALADVINNAVGREAVVGVD  184 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS-------------------HHHHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECC-------------------HHHHHHHHHHHHhhcCCceEEEcC
Confidence            4678999999999999999999999999999997544                   258888999998888877776543


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                          .++..+.+.+ +|+||+||.
T Consensus       185 ----~~~l~~~l~~-~DiVInaTp  203 (283)
T 3jyo_A          185 ----ARGIEDVIAA-ADGVVNATP  203 (283)
T ss_dssp             ----STTHHHHHHH-SSEEEECSS
T ss_pred             ----HHHHHHHHhc-CCEEEECCC
Confidence                2344555554 999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.73  E-value=0.00029  Score=59.88  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++++.++|+|+|+|++|..++..|...|. +++++|.+.-....+                       .+.  ...+  +
T Consensus         2 ~~~~~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~-----------------------~~~--~~~~--~   53 (144)
T 2hmt_A            2 GRIKNKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAY-----------------------ASY--ATHA--V   53 (144)
T ss_dssp             ----CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTT-----------------------TTT--CSEE--E
T ss_pred             CCCcCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-----------------------HHh--CCEE--E
Confidence            35667899999999999999999999996 688888763211111                       111  1111  1


Q ss_pred             eccC-CccchHHH-hcCCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEc
Q 013180          160 VLLY-DASSEEEI-LSGHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       160 ~~~~-~~~~~~~l-l~~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .... +.+...+. +. ++|+||.|+.+. .....+...+++.+.+.+...
T Consensus        54 ~~d~~~~~~l~~~~~~-~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~  103 (144)
T 2hmt_A           54 IANATEENELLSLGIR-NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK  103 (144)
T ss_dssp             ECCTTCHHHHHTTTGG-GCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EeCCCCHHHHHhcCCC-CCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEE
Confidence            1111 11222222 33 499999999874 666677788888877655443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.72  E-value=0.00019  Score=61.80  Aligned_cols=97  Identities=18%  Similarity=0.026  Sum_probs=63.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +...+|+|+|+|.+|+.+++.|...|. +++++|.|.                   .+++.++    +.  .+.  .+..
T Consensus         4 ~~~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~-------------------~~~~~~~----~~--~~~--~~~g   55 (141)
T 3llv_A            4 NGRYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSK-------------------EKIELLE----DE--GFD--AVIA   55 (141)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHHH----HT--TCE--EEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCH-------------------HHHHHHH----HC--CCc--EEEC
Confidence            446799999999999999999999997 688988751                   1222222    11  222  2222


Q ss_pred             cCC-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          162 LYD-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       162 ~~~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ..+ ++...+.-..++|+||.|+++......+...+++.+.+.|.+
T Consensus        56 d~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           56 DPTDESFYRSLDLEGVSAVLITGSDDEFNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             CTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHHHHHHHCCCCEEE
T ss_pred             CCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHHHHHHhCCceEEE
Confidence            222 222222222359999999999888888888888877655544

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=97.72  E-value=0.00019  Score=74.90  Aligned_cols=132  Identities=16%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|...+..|..+|. +++++|.+.-.                     .+.+ +.+ ..  .++.+.
T Consensus         9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga-~V~vi~~~~~~---------------------~~~~-l~~-~~--~i~~~~   62 (457)
T 1pjq_A            9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIP---------------------QFTV-WAN-EG--MLTLVE   62 (457)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCH---------------------HHHH-HHT-TT--SCEEEE
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEcCCCCH---------------------HHHH-HHh-cC--CEEEEE
Confidence            3678999999999999999999999994 79999975211                     0111 111 11  233444


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc--CCCCccCCCceEEcc----cc-cccCChhhH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT--GAGARADPTRIRVAD----LR-ESTNDPLSR  233 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~--g~G~k~dpt~i~i~d----i~-~~~~dpl~~  233 (448)
                      ..+.++.    +.+ +|+||-|+|+......+.+.|+++++|+-...  -.....-|.-+.-++    |+ .....-+++
T Consensus        63 ~~~~~~~----l~~-~~lVi~at~~~~~n~~i~~~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~la~  137 (457)
T 1pjq_A           63 GPFDETL----LDS-CWLAIAATDDDTVNQRVSDAAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLAR  137 (457)
T ss_dssp             SSCCGGG----GTT-CSEEEECCSCHHHHHHHHHHHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEECTTSCHHHHH
T ss_pred             CCCCccc----cCC-ccEEEEcCCCHHHHHHHHHHHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEECCCCChHHHH
Confidence            4454432    334 99999999999888999999999999963221  122222232222222    23 222334588


Q ss_pred             HHHHHHhhhc
Q 013180          234 AVMHRLRKDY  243 (448)
Q Consensus       234 ~~r~~l~~~~  243 (448)
                      .+|++|....
T Consensus       138 ~ir~~ie~~l  147 (457)
T 1pjq_A          138 LLREKLESLL  147 (457)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhc
Confidence            8888887643

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.68  E-value=5.7e-05  Score=73.72  Aligned_cols=151  Identities=16%  Similarity=0.188  Sum_probs=84.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcc--cccccCCccCchHHHHHHHHHhh-hCCC----
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNR--HAVATRADVGTPKALCLKKHFSS-IFPE----  153 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnR--q~l~~~~dvG~~Kv~~~~~~l~~-inP~----  153 (448)
                      .|++++|+|||+|-+|...+..|...|. ++++||++.-+.  +..  +.+..  +-+. ++.  ....++ +++.    
T Consensus        10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga-~VtViap~~~~~--l~~~~~~l~~--~~~~-~~~--~~~~~~~~~~~~~~~   81 (274)
T 1kyq_A           10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKS--IIPKFGKFIQ--NKDQ-PDY--REDAKRFINPNWDPT   81 (274)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTT--HHHHHCGGGC----------------CEEECTTCCTT
T ss_pred             EcCCCEEEEECCcHHHHHHHHHHHhCCC-EEEEEcCCCCcc--hhHHHHHHHh--cccc-ccc--cchhhcccccccccc
Confidence            4678999999999999999999999995 599999865211  100  00100  0000 000  000000 1110    


Q ss_pred             -ceE-EEEeccCCccchH---HHhcCCCCeEEEccCCHHHHHHHHHHHHHc---CCcEEEEc--CCCCccCCCceEEcc-
Q 013180          154 -CHI-DAKVLLYDASSEE---EILSGHPDFVLDCIDNIDTKVALLAACVRR---GLKVLCAT--GAGARADPTRIRVAD-  222 (448)
Q Consensus       154 -v~v-~~~~~~~~~~~~~---~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~---~ip~I~~~--g~G~k~dpt~i~i~d-  222 (448)
                       -+| ..+...+..+.+.   + ..+ +|+||-|+++.+....+...|+++   ++|+-.+.  -.....-|..+.-++ 
T Consensus        82 ~g~i~~~i~~~~~~~dL~~l~~-~~~-adlViaat~d~~~n~~I~~~Ar~~f~~~i~VNvvd~pel~~f~~Pa~~~~g~~  159 (274)
T 1kyq_A           82 KNEIYEYIRSDFKDEYLDLENE-NDA-WYIIMTCIPDHPESARIYHLCKERFGKQQLVNVADKPDLCDFYFGANLEIGDR  159 (274)
T ss_dssp             SCCCSEEECSSCCGGGGCCSST-TCC-EEEEEECCSCHHHHHHHHHHHHHHHCTTSEEEETTCGGGBSEECCEEEEETTT
T ss_pred             cCCeeEEEcCCCCHHHHhhccc-CCC-eEEEEEcCCChHHHHHHHHHHHHhcCCCcEEEECCCcccCeeEeeeEEEeCCC
Confidence             123 3343444432211   1 113 999999999999999999999999   98874322  111122233332222 


Q ss_pred             -----cccccCChhhHHHHHHHhh
Q 013180          223 -----LRESTNDPLSRAVMHRLRK  241 (448)
Q Consensus       223 -----i~~~~~dpl~~~~r~~l~~  241 (448)
                           -+....+-+++.+|++|..
T Consensus       160 l~IaIST~Gksp~lA~~ir~~ie~  183 (274)
T 1kyq_A          160 LQILISTNGLSPRFGALVRDEIRN  183 (274)
T ss_dssp             EEEEEEESSSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH
Confidence                 1334445566777777655

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.54  E-value=0.00077  Score=59.13  Aligned_cols=100  Identities=20%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +++.+.+|+|+|+|.+|..++..|...|. +++++|.+.-....+....                        ...+  +
T Consensus        15 ~~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~------------------------g~~~--~   67 (155)
T 2g1u_A           15 KKQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEF------------------------SGFT--V   67 (155)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTC------------------------CSEE--E
T ss_pred             cccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcC------------------------CCcE--E
Confidence            46678899999999999999999999997 7999998743322222000                        0111  1


Q ss_pred             eccC-CccchHHH-hcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEEc
Q 013180          160 VLLY-DASSEEEI-LSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCAT  207 (448)
Q Consensus       160 ~~~~-~~~~~~~l-l~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~~  207 (448)
                      .... +.+...+. +. ++|+||.|+.+......+...++. .+...|.+.
T Consensus        68 ~~d~~~~~~l~~~~~~-~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           68 VGDAAEFETLKECGME-KADMVFAFTNDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             ESCTTSHHHHHTTTGG-GCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EecCCCHHHHHHcCcc-cCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            1111 11111111 23 399999999998888888888887 665555544

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.47  E-value=0.00046  Score=69.43  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=62.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++.||+|+|+|.+|+.+++.|++.  ..++++|.+                   ..|.+       ++.+.+..... ..
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~~--~~v~~~~~~-------------------~~~~~-------~~~~~~~~~~~-d~   65 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKDE--FDVYIGDVN-------------------NENLE-------KVKEFATPLKV-DA   65 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTTT--SEEEEEESC-------------------HHHHH-------HHTTTSEEEEC-CT
T ss_pred             CccEEEEECCCHHHHHHHHHHhcC--CCeEEEEcC-------------------HHHHH-------HHhccCCcEEE-ec
Confidence            456899999999999999999754  467776543                   12222       22222221111 11


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .+.+...+++.+ +|+||.|+..+ ....+.+.|.+.|+.+++.+
T Consensus        66 ~d~~~l~~~~~~-~DvVi~~~p~~-~~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           66 SNFDKLVEVMKE-FELVIGALPGF-LGFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             TCHHHHHHHHTT-CSEEEECCCGG-GHHHHHHHHHHHTCEEEECC
T ss_pred             CCHHHHHHHHhC-CCEEEEecCCc-ccchHHHHHHhcCcceEeee
Confidence            234456667775 99999999765 45678899999999999965

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.35  E-value=0.00063  Score=67.60  Aligned_cols=83  Identities=11%  Similarity=0.114  Sum_probs=60.0

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||+|..++..|++.|+.+|+|++.+.                --..|++.+++.+.+..+ +++.... 
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~----------------~~~~~a~~la~~~~~~~~-~~~~~~~-  213 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKD----------------DFYANAEKTVEKINSKTD-CKAQLFD-  213 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS----------------TTHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCC----------------chHHHHHHHHHHhhhhcC-CceEEec-
Confidence            6789999999999999999999999999999965431                002478888888877654 4555432 


Q ss_pred             cCCc-cchHHHhcCCCCeEEEccC
Q 013180          162 LYDA-SSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       162 ~~~~-~~~~~ll~~~~D~VIda~D  184 (448)
                       ++. +...+.+.. +|+||+||.
T Consensus       214 -~~~~~~l~~~l~~-aDiIINaTp  235 (315)
T 3tnl_A          214 -IEDHEQLRKEIAE-SVIFTNATG  235 (315)
T ss_dssp             -TTCHHHHHHHHHT-CSEEEECSS
T ss_pred             -cchHHHHHhhhcC-CCEEEECcc
Confidence             222 233445554 999998874

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=97.25  E-value=0.0016  Score=66.74  Aligned_cols=101  Identities=22%  Similarity=0.305  Sum_probs=69.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcC-C-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSG-V-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsG-V-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++|+|+|+|++|+.++..|++.| + .++.++|.+                   ..|++.+++.+....+ .++......
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~-------------------~~~~~~la~~l~~~~~-~~~~~~~~D   61 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRT-------------------LSKCQEIAQSIKAKGY-GEIDITTVD   61 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESC-------------------HHHHHHHHHHHHHTTC-CCCEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECC-------------------HHHHHHHHHHhhhhcC-CceEEEEec
Confidence            48999999999999999999988 3 688887654                   2366666666654321 123333333


Q ss_pred             CC-ccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YD-ASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~-~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ++ .+...+++.+ ++|+||+|+.... ...+.+.|.+.++.+++.
T Consensus        62 ~~d~~~l~~~l~~~~~DvVin~ag~~~-~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           62 ADSIEELVALINEVKPQIVLNIALPYQ-DLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             TTCHHHHHHHHHHHCCSEEEECSCGGG-HHHHHHHHHHHTCCEEES
T ss_pred             CCCHHHHHHHHHhhCCCEEEECCCccc-ChHHHHHHHHhCCCEEEe
Confidence            32 3445555543 3899999987543 467778899999999874

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.22  E-value=0.0012  Score=61.42  Aligned_cols=106  Identities=15%  Similarity=0.197  Sum_probs=64.6

Q ss_pred             HHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCce
Q 013180           77 ESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECH  155 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~  155 (448)
                      ..+.+|++++|+|.|+ |++|+++++.|+..|. ++++++.+.-                   +.+.+.    .  +.+ 
T Consensus        14 ~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~-------------------~~~~~~----~--~~~-   66 (236)
T 3e8x_A           14 RENLYFQGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEE-------------------QGPELR----E--RGA-   66 (236)
T ss_dssp             -------CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGG-------------------GHHHHH----H--TTC-
T ss_pred             ccccCcCCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChH-------------------HHHHHH----h--CCC-
Confidence            3456788999999998 9999999999999996 6888764321                   111111    1  122 


Q ss_pred             EEEEeccCCccchHHHhcCCCCeEEEccC-------------CHHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          156 IDAKVLLYDASSEEEILSGHPDFVLDCID-------------NIDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       156 v~~~~~~~~~~~~~~ll~~~~D~VIda~D-------------n~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                      .+.+...++ +...+.+.+ +|+||.+..             |...-..+.++|++.+. .+|..++.|.
T Consensus        67 ~~~~~~Dl~-~~~~~~~~~-~D~vi~~ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  134 (236)
T 3e8x_A           67 SDIVVANLE-EDFSHAFAS-IDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT  134 (236)
T ss_dssp             SEEEECCTT-SCCGGGGTT-CSEEEECCCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTC
T ss_pred             ceEEEcccH-HHHHHHHcC-CCEEEECCCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCC
Confidence            033334444 555566665 999998875             33344567788888775 4666555543

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.18  E-value=0.003  Score=60.48  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=54.7

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||+|+|| |.+|..+++.+... |..=+.++|.+                                              
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~----------------------------------------------   35 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG----------------------------------------------   35 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT----------------------------------------------
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC----------------------------------------------
Confidence            7999998 99999999998866 76545566643                                              


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                        ++.++++..++|+|||++ +++.-.....+|.++|+|+|.+.
T Consensus        36 --~dl~~~~~~~~DvvIDfT-~p~a~~~~~~~a~~~g~~~VigT   76 (245)
T 1p9l_A           36 --DPLSLLTDGNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVVGT   76 (245)
T ss_dssp             --CCTHHHHHTTCCEEEECS-CTTTHHHHHHHHHHTTCEEEECC
T ss_pred             --CCHHHHhccCCcEEEEcc-ChHHHHHHHHHHHHcCCCEEEcC
Confidence              112344433499999999 45666777889999999998854

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.13  E-value=0.0013  Score=68.78  Aligned_cols=96  Identities=19%  Similarity=0.383  Sum_probs=67.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +.+|+|+|+||||+.++..|++. ++  ..|+++|.+.... +           +        .+.+     .+++  ..
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~-----------~--------~~~~-----g~~~--~~   65 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-D-----------V--------AQQY-----GVSF--KL   65 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-C-----------H--------HHHH-----TCEE--EE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-h-----------H--------Hhhc-----CCce--eE
Confidence            57899999999999999999986 45  5899998664321 1           1        1111     1233  33


Q ss_pred             ccCCccchH----HHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          161 LLYDASSEE----EILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       161 ~~~~~~~~~----~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      ..++.++..    .++.+ .|+||++.... .-..+.++|.+.|+-+|+.+.
T Consensus        66 ~~Vdadnv~~~l~aLl~~-~DvVIN~s~~~-~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           66 QQITPQNYLEVIGSTLEE-NDFLIDVSIGI-SSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             CCCCTTTHHHHTGGGCCT-TCEEEECCSSS-CHHHHHHHHHHHTCEEEESSC
T ss_pred             EeccchhHHHHHHHHhcC-CCEEEECCccc-cCHHHHHHHHHcCCCEEECCC
Confidence            455666543    35555 69999987665 346788999999999999654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.04  E-value=0.0018  Score=64.30  Aligned_cols=84  Identities=19%  Similarity=0.280  Sum_probs=57.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.|..++..|+..|+.+|+|++          |..      -...|++.+++.+....+ +.+.... 
T Consensus       146 l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~n----------Rt~------~~~~~a~~la~~~~~~~~-~~v~~~~-  207 (312)
T 3t4e_A          146 MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFN----------RKD------DFFEKAVAFAKRVNENTD-CVVTVTD-  207 (312)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE----------CSS------THHHHHHHHHHHHHHHSS-CEEEEEE-
T ss_pred             cCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEE----------CCC------chHHHHHHHHHHhhhccC-cceEEec-
Confidence            6789999999999999999999999999999954          330      002478888888876554 4444432 


Q ss_pred             cCCc-cchHHHhcCCCCeEEEccCC
Q 013180          162 LYDA-SSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~-~~~~~ll~~~~D~VIda~Dn  185 (448)
                       +.. +...+.+.+ +|+||+||.-
T Consensus       208 -~~~l~~~~~~l~~-~DiIINaTp~  230 (312)
T 3t4e_A          208 -LADQHAFTEALAS-ADILTNGTKV  230 (312)
T ss_dssp             -TTCHHHHHHHHHH-CSEEEECSST
T ss_pred             -hHhhhhhHhhccC-ceEEEECCcC
Confidence             111 111334444 8999988753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.95  E-value=0.0059  Score=51.39  Aligned_cols=90  Identities=16%  Similarity=0.237  Sum_probs=56.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .+|+|+|+|.+|+.++..|...|. +++++|.+.-                   +++.+++.    . .+.  .+....+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~-------------------~~~~~~~~----~-~~~--~~~~d~~   57 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKD-------------------ICKKASAE----I-DAL--VINGDCT   57 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHH-------------------HHHHHHHH----C-SSE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HHHHHHHh----c-CcE--EEEcCCC
Confidence            589999999999999999999995 6888886421                   12222111    1 122  1211111


Q ss_pred             -ccchHHH-hcCCCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180          165 -ASSEEEI-LSGHPDFVLDCIDNIDTKVALLAACVRRGLK  202 (448)
Q Consensus       165 -~~~~~~l-l~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip  202 (448)
                       .+...+. +. ++|+||.|+.+......+...++..+..
T Consensus        58 ~~~~l~~~~~~-~~d~vi~~~~~~~~~~~~~~~~~~~~~~   96 (140)
T 1lss_A           58 KIKTLEDAGIE-DADMYIAVTGKEEVNLMSSLLAKSYGIN   96 (140)
T ss_dssp             SHHHHHHTTTT-TCSEEEECCSCHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHcCcc-cCCEEEEeeCCchHHHHHHHHHHHcCCC
Confidence             1111212 23 4999999999887777777778776643

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.91  E-value=0.0012  Score=64.86  Aligned_cols=76  Identities=20%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++.++|+|+|+||+|..++..|+..|+.+++++|.+.                   .|++.+++.+....+  ++  .  
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~-------------------~ka~~la~~~~~~~~--~~--~--  193 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTV-------------------EKAERLVREGDERRS--AY--F--  193 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSH-------------------HHHHHHHHHSCSSSC--CE--E--
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHhhhccC--ce--e--
Confidence            5789999999999999999999999999999965441                   466666655533211  11  1  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        +.++..+.+.+ +|+||+|+..
T Consensus       194 --~~~~~~~~~~~-aDivIn~t~~  214 (297)
T 2egg_A          194 --SLAEAETRLAE-YDIIINTTSV  214 (297)
T ss_dssp             --CHHHHHHTGGG-CSEEEECSCT
T ss_pred             --eHHHHHhhhcc-CCEEEECCCC
Confidence              11223344454 9999999865

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.86  E-value=0.0023  Score=62.16  Aligned_cols=74  Identities=23%  Similarity=0.404  Sum_probs=53.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++++|+|+||.|..++..|+..|+.+|++++          |..         .|++.+++.+..  .  .+.+.. 
T Consensus       118 l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~----------R~~---------~~a~~la~~~~~--~--~~~~~~-  173 (272)
T 3pwz_A          118 LRNRRVLLLGAGGAVRGALLPFLQAGPSELVIAN----------RDM---------AKALALRNELDH--S--RLRISR-  173 (272)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEEC----------SCH---------HHHHHHHHHHCC--T--TEEEEC-
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEe----------CCH---------HHHHHHHHHhcc--C--CeeEee-
Confidence            5788999999999999999999999999999954          432         477777777665  1  233321 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                       +  ++...   .++|+||+||..
T Consensus       174 -~--~~l~~---~~~DivInaTp~  191 (272)
T 3pwz_A          174 -Y--EALEG---QSFDIVVNATSA  191 (272)
T ss_dssp             -S--GGGTT---CCCSEEEECSSG
T ss_pred             -H--HHhcc---cCCCEEEECCCC
Confidence             1  11111   359999999865

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.84  E-value=0.0054  Score=54.90  Aligned_cols=90  Identities=21%  Similarity=0.180  Sum_probs=58.6

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +.+.+|+|+|+|.+|..+++.|... |. +++++|.|.                   .|++.+    .+.  .+.+  +.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~-------------------~~~~~~----~~~--g~~~--~~   88 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIRE-------------------EAAQQH----RSE--GRNV--IS   88 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCH-------------------HHHHHH----HHT--TCCE--EE
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCH-------------------HHHHHH----HHC--CCCE--EE
Confidence            4577999999999999999999999 96 688888753                   122222    221  1222  11


Q ss_pred             ccC-CccchHHH--hcCCCCeEEEccCCHHHHHHHHHHHHHcC
Q 013180          161 LLY-DASSEEEI--LSGHPDFVLDCIDNIDTKVALLAACVRRG  200 (448)
Q Consensus       161 ~~~-~~~~~~~l--l~~~~D~VIda~Dn~~~r~~l~~~c~~~~  200 (448)
                      ... +.+...+.  +. ++|+||.|+.+...-..+...++..+
T Consensus        89 gd~~~~~~l~~~~~~~-~ad~vi~~~~~~~~~~~~~~~~~~~~  130 (183)
T 3c85_A           89 GDATDPDFWERILDTG-HVKLVLLAMPHHQGNQTALEQLQRRN  130 (183)
T ss_dssp             CCTTCHHHHHTBCSCC-CCCEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHhccCCC-CCCEEEEeCCChHHHHHHHHHHHHHC
Confidence            111 11222222  33 49999999999877777777777765

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.80  E-value=0.0072  Score=51.98  Aligned_cols=94  Identities=14%  Similarity=0.162  Sum_probs=58.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|.+|..+++.|...|. .++++|.|.-                   +++.+    ++  ..+.+  +....
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~-------------------~~~~~----~~--~g~~~--i~gd~   58 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRT-------------------RVDEL----RE--RGVRA--VLGNA   58 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHH-------------------HHHHH----HH--TTCEE--EESCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHHH----HH--cCCCE--EECCC
Confidence            4689999999999999999999997 6999887621                   22222    22  12222  22222


Q ss_pred             C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc--CCcEEE
Q 013180          164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR--GLKVLC  205 (448)
Q Consensus       164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~--~ip~I~  205 (448)
                      + ++...+.-..++|+||.|+++...-..+...+++.  ++++|.
T Consensus        59 ~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           59 ANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             TSHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CCHHHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            2 22222221124999999999877666566666654  344444

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.71  E-value=0.013  Score=51.03  Aligned_cols=92  Identities=11%  Similarity=0.025  Sum_probs=60.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|+|+|.+|+.++..|...|. +++++|.|.-                  .+.+.+.+.+   ...+.+  +...
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~------------------~~~~~~~~~~---~~~~~~--i~gd   57 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPE------------------DDIKQLEQRL---GDNADV--IPGD   57 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCH------------------HHHHHHHHHH---CTTCEE--EESC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCh------------------HHHHHHHHhh---cCCCeE--EEcC
Confidence            46789999999999999999999995 6999887521                  0111122111   122332  2222


Q ss_pred             C-CccchHHH-hcCCCCeEEEccCCHHHHHHHHHHHHHc
Q 013180          163 Y-DASSEEEI-LSGHPDFVLDCIDNIDTKVALLAACVRR  199 (448)
Q Consensus       163 ~-~~~~~~~l-l~~~~D~VIda~Dn~~~r~~l~~~c~~~  199 (448)
                      . +++...+. +. ++|+||.|+++......+...+++.
T Consensus        58 ~~~~~~l~~a~i~-~ad~vi~~~~~d~~n~~~~~~a~~~   95 (153)
T 1id1_A           58 SNDSSVLKKAGID-RCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             TTSHHHHHHHTTT-TCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHcChh-hCCEEEEecCChHHHHHHHHHHHHH
Confidence            2 22333333 44 4999999999988888888888876

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=96.66  E-value=0.0019  Score=55.84  Aligned_cols=74  Identities=9%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +..+++|+|+|+|++|..++..|...|+. ++++|.+.                   .|++.+++.+.     ..+..  
T Consensus        18 ~~~~~~v~iiG~G~iG~~~a~~l~~~g~~-v~v~~r~~-------------------~~~~~~a~~~~-----~~~~~--   70 (144)
T 3oj0_A           18 KNGGNKILLVGNGMLASEIAPYFSYPQYK-VTVAGRNI-------------------DHVRAFAEKYE-----YEYVL--   70 (144)
T ss_dssp             HHCCCEEEEECCSHHHHHHGGGCCTTTCE-EEEEESCH-------------------HHHHHHHHHHT-----CEEEE--
T ss_pred             hccCCEEEEECCCHHHHHHHHHHHhCCCE-EEEEcCCH-------------------HHHHHHHHHhC-----CceEe--
Confidence            33489999999999999999999999988 99977541                   24444444432     22211  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                          .++..+.+.+ +|+||.|+...
T Consensus        71 ----~~~~~~~~~~-~Divi~at~~~   91 (144)
T 3oj0_A           71 ----INDIDSLIKN-NDVIITATSSK   91 (144)
T ss_dssp             ----CSCHHHHHHT-CSEEEECSCCS
T ss_pred             ----ecCHHHHhcC-CCEEEEeCCCC
Confidence                1234556665 99999998764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.63  E-value=0.0039  Score=60.80  Aligned_cols=74  Identities=18%  Similarity=0.294  Sum_probs=53.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.|..++..|+..|+.+|++++.+                   ..|++.+++.+....   .+.+.. 
T Consensus       124 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~-------------------~~~a~~la~~~~~~~---~~~~~~-  180 (281)
T 3o8q_A          124 LKGATILLIGAGGAARGVLKPLLDQQPASITVTNRT-------------------FAKAEQLAELVAAYG---EVKAQA-  180 (281)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESS-------------------HHHHHHHHHHHGGGS---CEEEEE-
T ss_pred             ccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECC-------------------HHHHHHHHHHhhccC---CeeEee-
Confidence            578999999999999999999999999999996543                   246777777776543   233322 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                       +     +++. .++|+||+|+..
T Consensus       181 -~-----~~l~-~~aDiIInaTp~  197 (281)
T 3o8q_A          181 -F-----EQLK-QSYDVIINSTSA  197 (281)
T ss_dssp             -G-----GGCC-SCEEEEEECSCC
T ss_pred             -H-----HHhc-CCCCEEEEcCcC
Confidence             1     1111 349999999865

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.60  E-value=0.0099  Score=54.86  Aligned_cols=95  Identities=12%  Similarity=0.051  Sum_probs=62.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      .+|+|+|+|.+|+.+++.|...|. .++++|.|.                   .+++.+++.     ..+.  .+.... 
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~-------------------~~~~~l~~~-----~~~~--~i~gd~~   53 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKY-GVVIINKDR-------------------ELCEEFAKK-----LKAT--IIHGDGS   53 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTC-CEEEEESCH-------------------HHHHHHHHH-----SSSE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH-------------------HHHHHHHHH-----cCCe--EEEcCCC
Confidence            379999999999999999999996 688988652                   122222211     1222  222222 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~  206 (448)
                      +.+...+.--.++|+||.|+++......+...+++ ++.+.+.+
T Consensus        54 ~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           54 HKEILRDAEVSKNDVVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             SHHHHHHHTCCTTCEEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             CHHHHHhcCcccCCEEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            22333333223599999999998888888888876 56655554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.59  E-value=0.0025  Score=62.12  Aligned_cols=38  Identities=18%  Similarity=0.348  Sum_probs=34.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+++++|+|+|+||.|..++..|++.|+.++++++.+.
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            36789999999999999999999999999999987664

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.57  E-value=0.016  Score=51.73  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +++|+|.|+ |++|+++++.|+..| -++++++.+.-....+                         ..+.+  +.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~-------------------------~~~~~--~~~~~D   54 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPSE-------------------------GPRPA--HVVVGD   54 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCSS-------------------------SCCCS--EEEESC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhcccc-------------------------cCCce--EEEEec
Confidence            368999998 999999999999999 5788887653221110                         01222  223333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCC----------HHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDN----------IDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn----------~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                      + +.+...+.+.+ +|+||.+...          ...-..+.++|.+.+. .+|..++.+.
T Consensus        55 ~~~~~~~~~~~~~-~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~  114 (206)
T 1hdo_A           55 VLQAADVDKTVAG-QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFL  114 (206)
T ss_dssp             TTSHHHHHHHHTT-CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGG
T ss_pred             CCCHHHHHHHHcC-CCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeeeee
Confidence            3 33445566665 8999987653          2334567778887776 4666554443

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.56  E-value=0.014  Score=55.61  Aligned_cols=96  Identities=17%  Similarity=0.216  Sum_probs=61.8

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +.++|+|.|+|.+|++++..|...|. +++.++.+.-   ++                          .+.+++  +...
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~---~~--------------------------~~~~~~--~~~D   49 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQ---PM--------------------------PAGVQT--LIAD   49 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTS---CC--------------------------CTTCCE--EECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcc---cc--------------------------ccCCce--EEcc
Confidence            35789999999999999999999996 5777665321   11                          123333  2222


Q ss_pred             C-CccchHHHhcCCCCeEEEccC------------CHHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID------------NIDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D------------n~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      + +.+...+++.+++|+||.+..            |...-..+.++|.+.++ .+|..++.+
T Consensus        50 l~d~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~  111 (286)
T 3gpi_A           50 VTRPDTLASIVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTG  111 (286)
T ss_dssp             TTCGGGCTTGGGGCCSEEEECHHHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGG
T ss_pred             CCChHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccE
Confidence            2 334444555545999998763            34455677888888775 466554433

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.54  E-value=0.017  Score=52.89  Aligned_cols=96  Identities=23%  Similarity=0.287  Sum_probs=64.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ++|+|.|+ |++|+++++.|+..| -++++++.+.-....+                          .+  .++.+...+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~--------------------------~~--~~~~~~~Dl   55 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKIE--------------------------NE--HLKVKKADV   55 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCCC--------------------------CT--TEEEECCCT
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchhc--------------------------cC--ceEEEEecC
Confidence            68999995 999999999999999 5788877653322211                          12  233333333


Q ss_pred             -CccchHHHhcCCCCeEEEccCC-----------HHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          164 -DASSEEEILSGHPDFVLDCIDN-----------IDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       164 -~~~~~~~ll~~~~D~VIda~Dn-----------~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                       +.+...+++.+ +|+||.|...           ...-..+.++|.+.++ .+|..++.+
T Consensus        56 ~d~~~~~~~~~~-~d~vi~~a~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~  114 (227)
T 3dhn_A           56 SSLDEVCEVCKG-ADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAG  114 (227)
T ss_dssp             TCHHHHHHHHTT-CSEEEECCCC------CCSHHHHHHHHHHHHHHHTTCSEEEEECCST
T ss_pred             CCHHHHHHHhcC-CCEEEEeCcCCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChh
Confidence             34445566665 8999988643           3445577888988886 577665544

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.46  E-value=0.0071  Score=59.84  Aligned_cols=110  Identities=12%  Similarity=0.164  Sum_probs=66.0

Q ss_pred             HHHHHHhhCCcEEEEc-CChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           76 VESQQKVSGSYVVVIG-LGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        76 ~~~q~kL~~~~VlVVG-~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      +.++..++.++|+|.| .|.+|+++++.|... |. +++.+|...-   ++..  +.                   -.+ 
T Consensus        16 ~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~---~~~~--~~-------------------~~~-   69 (372)
T 3slg_A           16 TQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTD---RLGD--LV-------------------KHE-   69 (372)
T ss_dssp             -------CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCT---TTGG--GG-------------------GST-
T ss_pred             hcCCcccCCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChh---hhhh--hc-------------------cCC-
Confidence            4567778889999999 599999999999998 64 6888775431   1110  00                   012 


Q ss_pred             ceEEEEeccCC--ccchHHHhcCCCCeEEEccCCHH-----------------HHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          154 CHIDAKVLLYD--ASSEEEILSGHPDFVLDCIDNID-----------------TKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       154 v~v~~~~~~~~--~~~~~~ll~~~~D~VIda~Dn~~-----------------~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                       .++.+...++  .+...+.+.+ +|+||.|.....                 .-..+.++|++.+..+|..++.+..+
T Consensus        70 -~v~~~~~Dl~~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg  146 (372)
T 3slg_A           70 -RMHFFEGDITINKEWVEYHVKK-CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYG  146 (372)
T ss_dssp             -TEEEEECCTTTCHHHHHHHHHH-CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGB
T ss_pred             -CeEEEeCccCCCHHHHHHHhcc-CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhC
Confidence             3444444444  3445556665 999998654211                 11357788888888888877654433

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.30  E-value=0.026  Score=51.52  Aligned_cols=95  Identities=15%  Similarity=0.185  Sum_probs=63.3

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|+|.| .|++|+++++.|+..| -++++++.+.-....+                           +.  ++.+...++
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~---------------------------~~--~~~~~~D~~   51 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY---------------------------NN--VKAVHFDVD   51 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC---------------------------TT--EEEEECCTT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc---------------------------CC--ceEEEeccc
Confidence            699998 7999999999999999 4688877653211111                           22  333444433


Q ss_pred             --ccchHHHhcCCCCeEEEccC---------CHHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          165 --ASSEEEILSGHPDFVLDCID---------NIDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       165 --~~~~~~ll~~~~D~VIda~D---------n~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                        .+...+.+.+ +|+||.|..         |...-..+.++|++.++ .+|..++.+.
T Consensus        52 d~~~~~~~~~~~-~d~vi~~ag~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           52 WTPEEMAKQLHG-MDAIINVSGSGGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             SCHHHHHTTTTT-CSEEEECCCCTTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCHHHHHHHHcC-CCEEEECCcCCCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence              3445555665 999998876         44455678888988886 5666555443

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.30  E-value=0.0069  Score=58.13  Aligned_cols=35  Identities=34%  Similarity=0.482  Sum_probs=31.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++ +|+|+|+||.|..++..|+..|+.+|+++|.+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            456 99999999999999999999999999997664

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.25  E-value=0.025  Score=54.43  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=61.0

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.| .|.+|++++..|...|. +++.++.+.   ....   +              .          .++.+...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~---~~~~---~--------------~----------~~~~~~~D   50 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSI---GNKA---I--------------N----------DYEYRVSD   50 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCC---C--------------------------------CCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCC---Cccc---C--------------C----------ceEEEEcc
Confidence            46899999 59999999999999996 677766551   1000   0              0          23333333


Q ss_pred             CCccchHHHhcCCCCeEEEccCC-------------HHHHHHHHHHHHHcCCc-EEEEcCCC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDN-------------IDTKVALLAACVRRGLK-VLCATGAG  210 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn-------------~~~r~~l~~~c~~~~ip-~I~~~g~G  210 (448)
                      ++.+...+++.+ +|+||.|...             ...-..+.++|.+.+++ +|..++.+
T Consensus        51 l~~~~~~~~~~~-~d~Vih~a~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~  111 (311)
T 3m2p_A           51 YTLEDLINQLND-VDAVVHLAATRGSQGKISEFHDNEILTQNLYDACYENNISNIVYASTIS  111 (311)
T ss_dssp             CCHHHHHHHTTT-CSEEEECCCCCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             ccHHHHHHhhcC-CCEEEEccccCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHH
Confidence            334445566664 8999987642             33345778899998887 66655443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.18  E-value=0.023  Score=53.22  Aligned_cols=80  Identities=18%  Similarity=0.310  Sum_probs=55.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      ||.|||+|.+|..++.+|...|+.-..++|.+.    +..+                               .      .
T Consensus         2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~----~~~~-------------------------------~------~   40 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG----EHEK-------------------------------M------V   40 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC----CCTT-------------------------------E------E
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc----chhh-------------------------------h------c
Confidence            799999999999999999988875447877652    1110                               1      1


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .+.++++..++|+|+.|+.+. ....+...|.+.|+++|...
T Consensus        41 ~~~~~l~~~~~DvVv~~~~~~-~~~~~~~~~l~~G~~vv~~~   81 (236)
T 2dc1_A           41 RGIDEFLQREMDVAVEAASQQ-AVKDYAEKILKAGIDLIVLS   81 (236)
T ss_dssp             SSHHHHTTSCCSEEEECSCHH-HHHHHHHHHHHTTCEEEESC
T ss_pred             CCHHHHhcCCCCEEEECCCHH-HHHHHHHHHHHCCCcEEEEC
Confidence            234455522499999999876 44444567778899888753

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.05  E-value=0.016  Score=59.10  Aligned_cols=74  Identities=22%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +.+++|+|+|+|++|..+++.|...|+.+++++|.+.                   .|++.+++.+.     .+  +   
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~-------------------~ra~~la~~~g-----~~--~---  215 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY-------------------ERAVELARDLG-----GE--A---  215 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH-------------------HHHHHHHHHHT-----CE--E---
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH-------------------HHHHHHHHHcC-----Cc--e---
Confidence            6789999999999999999999999999999976431                   24433333332     11  1   


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                       ++.++..+.+.+ +|+||+|+...
T Consensus       216 -~~~~~l~~~l~~-aDvVi~at~~~  238 (404)
T 1gpj_A          216 -VRFDELVDHLAR-SDVVVSATAAP  238 (404)
T ss_dssp             -CCGGGHHHHHHT-CSEEEECCSSS
T ss_pred             -ecHHhHHHHhcC-CCEEEEccCCC
Confidence             112344556665 99999998653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.04  E-value=0.054  Score=52.33  Aligned_cols=108  Identities=21%  Similarity=0.272  Sum_probs=65.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE-
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK-  159 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~-  159 (448)
                      +++++|+|.|+ |++|+++++.|+..|. +++++|.+.                   .+.+.+.+.+....+ -+++.+ 
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~~   67 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSA-------------------SKLANLQKRWDAKYP-GRFETAV   67 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHST-TTEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCc-------------------ccHHHHHHHhhccCC-CceEEEE
Confidence            45689999998 9999999999999995 577655431                   133333344433322 134443 


Q ss_pred             eccC-CccchHHHhcCCCCeEEEccCC--------------HHHHHHHHHHHHH-cC-CcEEEEcCCCC
Q 013180          160 VLLY-DASSEEEILSGHPDFVLDCIDN--------------IDTKVALLAACVR-RG-LKVLCATGAGA  211 (448)
Q Consensus       160 ~~~~-~~~~~~~ll~~~~D~VIda~Dn--------------~~~r~~l~~~c~~-~~-ip~I~~~g~G~  211 (448)
                      ...+ +.+...+++.+ +|+||.+...              ...-..+.++|.+ .+ ..+|..++.+.
T Consensus        68 ~~D~~d~~~~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~  135 (342)
T 1y1p_A           68 VEDMLKQGAYDEVIKG-AAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVS  135 (342)
T ss_dssp             CSCTTSTTTTTTTTTT-CSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGG
T ss_pred             ecCCcChHHHHHHHcC-CCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHH
Confidence            2333 33445555654 9999988642              2223456777874 44 46776655433

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.04  E-value=0.0046  Score=60.40  Aligned_cols=113  Identities=15%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||.|..++..|...|+++|++++.+.=....|...+       +....    +.+.++..++-|.+.+.
T Consensus       120 ~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~-------~~~~~----~~l~~l~~DivInaTp~  188 (282)
T 3fbt_A          120 IKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF-------KVISY----DELSNLKGDVIINCTPK  188 (282)
T ss_dssp             CTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS-------EEEEH----HHHTTCCCSEEEECSST
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc-------CcccH----HHHHhccCCEEEECCcc
Confidence            57899999999999999999999999999999876532221222111       00000    11111222333333221


Q ss_pred             cCCcc-----chHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDAS-----SEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~-----~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      ...++     -..+.+.. ..+|+|.+-++.. -.+.+.|++.|.+++++.
T Consensus       189 Gm~~~~~~~pi~~~~l~~-~~~v~DlvY~P~~-T~ll~~A~~~G~~~~~Gl  237 (282)
T 3fbt_A          189 GMYPKEGESPVDKEVVAK-FSSAVDLIYNPVE-TLFLKYARESGVKAVNGL  237 (282)
T ss_dssp             TSTTSTTCCSSCHHHHTT-CSEEEESCCSSSS-CHHHHHHHHTTCEEECSH
T ss_pred             CccCCCccCCCCHHHcCC-CCEEEEEeeCCCC-CHHHHHHHHCcCeEeCcH
Confidence            11111     11233443 5677888877632 345677788888877643

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.99  E-value=0.096  Score=48.17  Aligned_cols=102  Identities=15%  Similarity=0.295  Sum_probs=64.1

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +.+++|+|.| .|++|+++++.|+..|.. ++.++|.+.-.   +...           +           .+.  +..+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~---~~~~-----------~-----------~~~--~~~~   68 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLT---FDEE-----------A-----------YKN--VNQE   68 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCC---CCSG-----------G-----------GGG--CEEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCC---cccc-----------c-----------cCC--ceEE
Confidence            5678999998 599999999999999963 78888765321   1100           0           011  2233


Q ss_pred             eccC-CccchHHHhcCCCCeEEEccCCH--------------HHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          160 VLLY-DASSEEEILSGHPDFVLDCIDNI--------------DTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       160 ~~~~-~~~~~~~ll~~~~D~VIda~Dn~--------------~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                      ...+ +.+...+++.+ +|+||.|....              ..-..+.+.|.+.+. .+|..++.+.
T Consensus        69 ~~D~~d~~~~~~~~~~-~d~vi~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~  135 (242)
T 2bka_A           69 VVDFEKLDDYASAFQG-HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  135 (242)
T ss_dssp             ECCGGGGGGGGGGGSS-CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             ecCcCCHHHHHHHhcC-CCEEEECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcC
Confidence            3333 33445566664 99999987532              223456677887775 5666555544

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.98  E-value=0.042  Score=51.85  Aligned_cols=83  Identities=18%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             HhhCCcEEEEcC-C-hHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           81 KVSGSYVVVIGL-G-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      .+++++|+|.|+ | |+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+.. ..++..
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~-~~~~~~   77 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGAD-VVISDYH-------------------ERRLGETRDQLADLG-LGRVEA   77 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTC-SSCEEE
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCE-EEEecCC-------------------HHHHHHHHHHHHhcC-CCceEE
Confidence            367889999999 7 8999999999999965 7776654                   234455555555443 235555


Q ss_pred             EeccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          159 KVLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      +...++. +....++.      ++.|+||.+..
T Consensus        78 ~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag  110 (266)
T 3o38_A           78 VVCDVTSTEAVDALITQTVEKAGRLDVLVNNAG  110 (266)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence            5554433 33333322      24788887754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.98  E-value=0.0054  Score=59.54  Aligned_cols=33  Identities=18%  Similarity=0.315  Sum_probs=30.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|+|+||.|..++..|+..| .+|++++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G-~~v~V~nRt  150 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQG-LQVSVLNRS  150 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCC-CEEEEEeCC
Confidence            889999999999999999999999 999997655

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.98  E-value=0.029  Score=54.98  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +..++|+|.|+ |.+|+++++.|...| -++++++.+.               +-...|...+. .+..  +.+++  +.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~---------------~~~~~~~~~~~-~l~~--~~v~~--~~   66 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPG---------------PRSPSKAKIFK-ALED--KGAII--VY   66 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSS---------------CCCHHHHHHHH-HHHH--TTCEE--EE
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCC---------------CCChhHHHHHH-HHHh--CCcEE--EE
Confidence            34578999998 999999999999999 5677765542               00112333221 1221  33433  33


Q ss_pred             ccC-CccchHHHhc--CCCCeEEEccC--CHHHHHHHHHHHHHcC-CcEEEEcCCC
Q 013180          161 LLY-DASSEEEILS--GHPDFVLDCID--NIDTKVALLAACVRRG-LKVLCATGAG  210 (448)
Q Consensus       161 ~~~-~~~~~~~ll~--~~~D~VIda~D--n~~~r~~l~~~c~~~~-ip~I~~~g~G  210 (448)
                      ..+ +.+.....+.  + +|+||.+..  |......+.++|.+.+ ++.+..+..|
T Consensus        67 ~Dl~d~~~l~~~~~~~~-~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~S~~g  121 (346)
T 3i6i_A           67 GLINEQEAMEKILKEHE-IDIVVSTVGGESILDQIALVKAMKAVGTIKRFLPSEFG  121 (346)
T ss_dssp             CCTTCHHHHHHHHHHTT-CCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEECSCCS
T ss_pred             eecCCHHHHHHHHhhCC-CCEEEECCchhhHHHHHHHHHHHHHcCCceEEeecccC
Confidence            444 4455666676  6 999999886  5666678889999988 7766544444

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.054  Score=52.32  Aligned_cols=87  Identities=20%  Similarity=0.320  Sum_probs=63.7

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      ....|+++.|+|.|+ ||+|.++|+.|++.|.+  ++.++|.+                   ..+.+.+++.+.+.+|..
T Consensus        27 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~   87 (287)
T 3rku_A           27 AAERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARR-------------------LEKLEELKKTIDQEFPNA   87 (287)
T ss_dssp             HHHHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESC-------------------HHHHHHHHHHHHHHCTTC
T ss_pred             chhhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECC-------------------HHHHHHHHHHHHhhCCCC
Confidence            356788999999976 79999999999999875  77776643                   235667777888887778


Q ss_pred             eEEEEeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          155 HIDAKVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       155 ~v~~~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ++..+...++. +....++.      +..|++|.+.
T Consensus        88 ~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  123 (287)
T 3rku_A           88 KVHVAQLDITQAEKIKPFIENLPQEFKDIDILVNNA  123 (287)
T ss_dssp             EEEEEECCTTCGGGHHHHHHTSCGGGCSCCEEEECC
T ss_pred             eEEEEECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            88877666543 44455443      2588888764

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.93  E-value=0.014  Score=56.33  Aligned_cols=36  Identities=22%  Similarity=0.464  Sum_probs=32.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|+|+|++|..++..|...|+ +++++|.+
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L~~~g~-~V~v~~r~  161 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYALVKEGA-KVFLWNRT  161 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHcCC-EEEEEECC
Confidence            3678999999999999999999999998 89997654

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.90  E-value=0.093  Score=51.78  Aligned_cols=103  Identities=14%  Similarity=0.224  Sum_probs=67.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +++++|+|.|+ |++|+++++.|+.. |..+++++|.+.                   .|.+.+.+.+.  .+  .++.+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~-------------------~~~~~~~~~~~--~~--~v~~~   75 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDE-------------------LKQSEMAMEFN--DP--RMRFF   75 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCH-------------------HHHHHHHHHHC--CT--TEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECCh-------------------hhHHHHHHHhc--CC--CEEEE
Confidence            46789999985 99999999999999 988898876542                   23333333332  12  34444


Q ss_pred             eccCC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHcCCc-EEEEcC
Q 013180          160 VLLYD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRRGLK-VLCATG  208 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~ip-~I~~~g  208 (448)
                      ...+. .+...+.+.+ +|+||.+..-.                 ..-..+.++|.+.+++ +|..+.
T Consensus        76 ~~Dl~d~~~l~~~~~~-~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS  142 (344)
T 2gn4_A           76 IGDVRDLERLNYALEG-VDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALST  142 (344)
T ss_dssp             ECCTTCHHHHHHHTTT-CSEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             ECCCCCHHHHHHHHhc-CCEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecC
Confidence            44443 3445566665 99999887421                 1124577888888864 555443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.89  E-value=0.021  Score=55.19  Aligned_cols=80  Identities=26%  Similarity=0.331  Sum_probs=52.5

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +++++|+|.| +||+|..++..|+..|.. +.++|.+                   ..|++.+++.+... +.+.+...+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~-V~i~~R~-------------------~~~~~~l~~~~~~~-~~~~~~~~D  175 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAE-VVLCGRK-------------------LDKAQAAADSVNKR-FKVNVTAAE  175 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHH-HTCCCEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCE-EEEEECC-------------------HHHHHHHHHHHHhc-CCcEEEEec
Confidence            6788999999 999999999999999986 8886643                   13555555555442 123322221


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                       .-+.+...+.+.. +|+||+|+.
T Consensus       176 -~~~~~~~~~~~~~-~DvlVn~ag  197 (287)
T 1lu9_A          176 -TADDASRAEAVKG-AHFVFTAGA  197 (287)
T ss_dssp             -CCSHHHHHHHTTT-CSEEEECCC
T ss_pred             -CCCHHHHHHHHHh-CCEEEECCC
Confidence             1122344555654 898887764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=95.88  E-value=0.039  Score=54.09  Aligned_cols=84  Identities=14%  Similarity=0.105  Sum_probs=53.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .+.++.|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..|.+.+.+.+....+..++..+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   64 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIR-------------------QDSIDKALATLEAEGSGPEVMGV   64 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHTCGGGEEEE
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCeEEEE
Confidence            466788999986 8999999999999997 47776654                   23445555556555554455555


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ...++. +....++.      +..|+||.+..
T Consensus        65 ~~Dl~~~~~v~~~~~~~~~~~g~id~lv~nAg   96 (319)
T 3ioy_A           65 QLDVASREGFKMAADEVEARFGPVSILCNNAG   96 (319)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             ECCCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            544433 22333321      24677776653

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.85  E-value=0.013  Score=53.32  Aligned_cols=95  Identities=23%  Similarity=0.185  Sum_probs=60.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|+|.|+ |++|+++++.|+..|. ++++++.+.-                   +..    .+  ..+.++  .+...++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-------------------~~~----~~--~~~~~~--~~~~D~~   53 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQ-------------------KAA----DR--LGATVA--TLVKEPL   53 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHH-------------------HHH----HH--TCTTSE--EEECCGG
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccc-------------------ccc----cc--cCCCce--EEecccc
Confidence            6999998 9999999999999995 6777654311                   111    11  113333  3334443


Q ss_pred             ccchHHHhcCCCCeEEEccCC----------HHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          165 ASSEEEILSGHPDFVLDCIDN----------IDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn----------~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                      .... +.+.+ +|+||.|...          ...-..+.+.|++.+..+|..++.+
T Consensus        54 d~~~-~~~~~-~d~vi~~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~  107 (224)
T 3h2s_A           54 VLTE-ADLDS-VDAVVDALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGSA  107 (224)
T ss_dssp             GCCH-HHHTT-CSEEEECCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCGG
T ss_pred             cccH-hhccc-CCEEEECCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecce
Confidence            3333 55554 9999988743          3344567788888887788766543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.85  E-value=0.035  Score=54.13  Aligned_cols=40  Identities=23%  Similarity=0.268  Sum_probs=27.1

Q ss_pred             HHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           77 ESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..++.+++++|+|.|+ |++|+++++.|+..|. +++++|..
T Consensus        12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   52 (347)
T 4id9_A           12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGR-TVRGFDLR   52 (347)
T ss_dssp             ---------CEEEETTTSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CcccccCCCEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            4567888999999998 9999999999999995 57776654

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.84  E-value=0.043  Score=53.38  Aligned_cols=37  Identities=24%  Similarity=0.325  Sum_probs=31.2

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+++++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus        16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~   53 (330)
T 2pzm_A           16 PRGSHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNF   53 (330)
T ss_dssp             STTTCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECC
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3566789999998 9999999999999994 68887764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.80  E-value=0.068  Score=51.79  Aligned_cols=96  Identities=17%  Similarity=0.247  Sum_probs=60.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..||+|+| +|.+|..+++.+... ++.=+.++|...-.   .      ...|+|.         +..+.+.+.+     
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~---~------~G~d~ge---------l~g~~~gv~v-----   63 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSP---Q------LGQDAGA---------FLGKQTGVAL-----   63 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCT---T------TTSBTTT---------TTTCCCSCBC-----
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcc---c------ccccHHH---------HhCCCCCcee-----
Confidence            46899999 899999999999875 33333344543110   0      1123332         1112222221     


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                         .++.++++.. +|+|||++ +++.-.....+|.++|+|+|.+.
T Consensus        64 ---~~dl~~ll~~-~DVVIDfT-~p~a~~~~~~~al~~G~~vVigT  104 (272)
T 4f3y_A           64 ---TDDIERVCAE-ADYLIDFT-LPEGTLVHLDAALRHDVKLVIGT  104 (272)
T ss_dssp             ---BCCHHHHHHH-CSEEEECS-CHHHHHHHHHHHHHHTCEEEECC
T ss_pred             ---cCCHHHHhcC-CCEEEEcC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence               1345666664 99999998 45666778889999999999843

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.74  E-value=0.033  Score=53.10  Aligned_cols=35  Identities=26%  Similarity=0.459  Sum_probs=31.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++ +|+|||+|++|..++..|...|+ +++++|.+
T Consensus       114 ~l~~-~v~iiG~G~~g~~~a~~l~~~g~-~v~v~~r~  148 (263)
T 2d5c_A          114 PLKG-PALVLGAGGAGRAVAFALREAGL-EVWVWNRT  148 (263)
T ss_dssp             CCCS-CEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCCC-eEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3677 99999999999999999999998 89998765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.72  E-value=0.037  Score=51.00  Aligned_cols=36  Identities=14%  Similarity=0.222  Sum_probs=28.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++...+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus        16 ~~~~~~I~iiG~G~mG~~la~~l~~~g~-~V~~~~~~   51 (209)
T 2raf_A           16 YFQGMEITIFGKGNMGQAIGHNFEIAGH-EVTYYGSK   51 (209)
T ss_dssp             ----CEEEEECCSHHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             ccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            5677899999999999999999999996 68888754

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=95.71  E-value=0.061  Score=48.55  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=59.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|+|.|+ |++|+++++.|+..|. ++++++.+.                   .|.+       ++.+.+++  +...++
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~-------------------~~~~-------~~~~~~~~--~~~D~~   52 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNA-------------------GKIT-------QTHKDINI--LQKDIF   52 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCS-------------------HHHH-------HHCSSSEE--EECCGG
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCc-------------------hhhh-------hccCCCeE--Eecccc
Confidence            6999995 9999999999999994 677766531                   1111       11144443  333343


Q ss_pred             ccchHHHhcCCCCeEEEccCC--------HHHHHHHHHHHHHcC-CcEEEEcCCC
Q 013180          165 ASSEEEILSGHPDFVLDCIDN--------IDTKVALLAACVRRG-LKVLCATGAG  210 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn--------~~~r~~l~~~c~~~~-ip~I~~~g~G  210 (448)
                      .... +.+.+ +|+||.|...        ...-..+.++|++.+ ..+|..++.+
T Consensus        53 d~~~-~~~~~-~d~vi~~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           53 DLTL-SDLSD-QNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             GCCH-HHHTT-CSEEEECCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             Chhh-hhhcC-CCEEEECCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecce
Confidence            3333 55555 9999998753        233456778888774 4566655443

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.70  E-value=0.076  Score=51.90  Aligned_cols=96  Identities=16%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .||+|+| +|-+|..+++.+... ++.=..++|...-   +      ....|+|.         +..+.+ ..+.     
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~---~------~~G~d~ge---------l~G~~~-~gv~-----   77 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGS---S------FVDKDASI---------LIGSDF-LGVR-----   77 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTC---T------TTTSBGGG---------GTTCSC-CSCB-----
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---c------ccccchHH---------hhccCc-CCce-----
Confidence            5899999 899999999998754 4443444454311   0      01123332         111111 1111     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      + ..+.++++. ++|+|||++ +++.-.....+|.++|+|+|.+.
T Consensus        78 v-~~dl~~ll~-~aDVvIDFT-~p~a~~~~~~~~l~~Gv~vViGT  119 (288)
T 3ijp_A           78 I-TDDPESAFS-NTEGILDFS-QPQASVLYANYAAQKSLIHIIGT  119 (288)
T ss_dssp             C-BSCHHHHTT-SCSEEEECS-CHHHHHHHHHHHHHHTCEEEECC
T ss_pred             e-eCCHHHHhc-CCCEEEEcC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence            1 134566676 499999999 45666777889999999999753

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=95.69  E-value=0.049  Score=52.37  Aligned_cols=98  Identities=20%  Similarity=0.229  Sum_probs=58.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCcc-ccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQV-SVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V-~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++|+|.|+ |++|+++++.|+..|  ++..++...- ....+                          .+  .++.+...
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g--~~v~~~~~~~~~~~~~--------------------------~~--~~~~~~~D   51 (313)
T 3ehe_A            2 SLIVVTGGAGFIGSHVVDKLSESN--EIVVIDNLSSGNEEFV--------------------------NE--AARLVKAD   51 (313)
T ss_dssp             -CEEEETTTSHHHHHHHHHHTTTS--CEEEECCCSSCCGGGS--------------------------CT--TEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhCC--CEEEEEcCCCCChhhc--------------------------CC--CcEEEECc
Confidence            47999986 999999999999998  4555432211 00000                          11  13333334


Q ss_pred             CCccchHHHhcCCCCeEEEccCC-----------------HHHHHHHHHHHHHcCC-cEEEEcCCCCcc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDN-----------------IDTKVALLAACVRRGL-KVLCATGAGARA  213 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn-----------------~~~r~~l~~~c~~~~i-p~I~~~g~G~k~  213 (448)
                      ++.+...+++.+ +|+||.+...                 ...-..+.++|.+.+. .+|..++.+..+
T Consensus        52 l~~~~~~~~~~~-~d~vih~a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg  119 (313)
T 3ehe_A           52 LAADDIKDYLKG-AEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYG  119 (313)
T ss_dssp             TTTSCCHHHHTT-CSEEEECCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGC
T ss_pred             CChHHHHHHhcC-CCEEEECCCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhC
Confidence            444556666664 8999877541                 2223356778888776 677766554433

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=95.69  E-value=0.04  Score=54.12  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..+++++|+|.|+ |++|+++++.|+..|.-+++++|..
T Consensus        41 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   80 (357)
T 2x6t_A           41 GSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   80 (357)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecC
Confidence            34566789999998 9999999999999996678888764

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=95.68  E-value=0.047  Score=53.47  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=31.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ...+|.|||+|.+|+.++.+|++.|..+++++|.+.
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~   58 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAAS   58 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSC
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            346899999999999999999999987899988763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.65  E-value=0.018  Score=59.94  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=62.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ..||+|+|+|-+|+.+|+.|...| -.+++||.|.=..                   +.+.+++       .+.++....
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~-~~v~vId~d~~~~-------------------~~~~~~~-------~~~~i~Gd~   55 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGEN-NDITIVDKDGDRL-------------------RELQDKY-------DLRVVNGHA   55 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTT-EEEEEEESCHHHH-------------------HHHHHHS-------SCEEEESCT
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCHHHH-------------------HHHHHhc-------CcEEEEEcC
Confidence            358999999999999999999888 4699999883221                   1111111       233333332


Q ss_pred             -CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEE
Q 013180          164 -DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLC  205 (448)
Q Consensus       164 -~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~  205 (448)
                       +++.+.+.--.++|++|-+|++-++-..+...|++. +.|-+-
T Consensus        56 ~~~~~L~~Agi~~ad~~ia~t~~De~Nl~~~~~Ak~~~~~~~~i   99 (461)
T 4g65_A           56 SHPDVLHEAGAQDADMLVAVTNTDETNMAACQVAFTLFNTPNRI   99 (461)
T ss_dssp             TCHHHHHHHTTTTCSEEEECCSCHHHHHHHHHHHHHHHCCSSEE
T ss_pred             CCHHHHHhcCCCcCCEEEEEcCChHHHHHHHHHHHHhcCCccce
Confidence             233333332346999999999988888888888774 555444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.60  E-value=0.14  Score=46.65  Aligned_cols=99  Identities=15%  Similarity=0.215  Sum_probs=61.5

Q ss_pred             CcEEEEc-CChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIG-LGGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++|+|.| .|++|.++++.|+ ..|. ++++++.+.-+                  |.+.    +.+..+.  ++.+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~------------------~~~~----~~~~~~~--~~~~~~D   60 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKT------------------RIPP----EIIDHER--VTVIEGS   60 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHH------------------HSCH----HHHTSTT--EEEEECC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccc------------------cchh----hccCCCc--eEEEECC
Confidence            4599999 5999999999999 8997 68886654110                  1100    1112233  4444444


Q ss_pred             C-CccchHHHhcCCCCeEEEccC--CHHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID--NIDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D--n~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      + +.+...+++.+ +|+||.+..  |+. -..+.+.|.+.+. .+|..++.+
T Consensus        61 ~~d~~~~~~~~~~-~d~vv~~ag~~n~~-~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           61 FQNPGXLEQAVTN-AEVVFVGAMESGSD-MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             TTCHHHHHHHHTT-CSEEEESCCCCHHH-HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHcC-CCEEEEcCCCCChh-HHHHHHHHHhcCCCeEEEEeece
Confidence            4 33455666765 999998876  445 4556677777775 455544443

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.54  E-value=0.11  Score=50.74  Aligned_cols=110  Identities=16%  Similarity=0.134  Sum_probs=66.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC---ceE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE---CHI  156 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~---v~v  156 (448)
                      .++.++|+|.|+ |.+|++++..|...|. +++.+|...-..               ..+    .+.+....+.   -++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~---------------~~~----~~~~~~~~~~~~~~~~   81 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGH---------------QYN----LDEVKTLVSTEQWSRF   81 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCC---------------HHH----HHHHHHTSCHHHHTTE
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCc---------------hhh----hhhhhhccccccCCce
Confidence            467899999995 8999999999999994 577765432100               011    1122221100   134


Q ss_pred             EEEeccC-CccchHHHhcCCCCeEEEccCC-----------------HHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          157 DAKVLLY-DASSEEEILSGHPDFVLDCIDN-----------------IDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       157 ~~~~~~~-~~~~~~~ll~~~~D~VIda~Dn-----------------~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                      +.+...+ +.+....++.+ +|+||.|...                 ...-..+.++|.+.++ .+|..++.+.
T Consensus        82 ~~~~~Dl~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~v  154 (351)
T 3ruf_A           82 CFIEGDIRDLTTCEQVMKG-VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSST  154 (351)
T ss_dssp             EEEECCTTCHHHHHHHTTT-CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGG
T ss_pred             EEEEccCCCHHHHHHHhcC-CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHh
Confidence            4444444 34455666764 9999998753                 1112357788988886 5666554433

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.50  E-value=0.052  Score=51.97  Aligned_cols=32  Identities=34%  Similarity=0.430  Sum_probs=27.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   33 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY-EVVVVDNL   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC-EEEEEeCC
Confidence            47999998 9999999999999996 57777643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=95.49  E-value=0.014  Score=55.38  Aligned_cols=93  Identities=14%  Similarity=0.174  Sum_probs=57.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +...+|.|||+|.+|+.++..|+..|...+.++|.+.                   .+++.+.+.+     .+.  ..  
T Consensus         8 ~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~-------------------~~~~~~~~~~-----g~~--~~--   59 (266)
T 3d1l_A            8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE-------------------ESARELAQKV-----EAE--YT--   59 (266)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH-------------------HHHHHHHHHT-----TCE--EE--
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH-------------------HHHHHHHHHc-----CCc--ee--
Confidence            4456899999999999999999999976577776431                   2333333322     121  11  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEEc
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~~  207 (448)
                          .+..+.+. ++|+||.|+-+...+..+.+....  .+..+++.+
T Consensus        60 ----~~~~~~~~-~~Dvvi~av~~~~~~~v~~~l~~~~~~~~ivv~~s  102 (266)
T 3d1l_A           60 ----TDLAEVNP-YAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTA  102 (266)
T ss_dssp             ----SCGGGSCS-CCSEEEECCCHHHHHHHHHHHHTTCCTTCEEEECC
T ss_pred             ----CCHHHHhc-CCCEEEEecCHHHHHHHHHHHHhhcCCCcEEEECC
Confidence                12233444 499999999887665444444321  355566643

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.48  E-value=0.053  Score=55.59  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|-+|..+++.|...|+ .+++||.|.-                   +++.++    +.  .+.+  +....
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~-------------------~v~~~~----~~--g~~v--i~GDa   55 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPD-------------------HIETLR----KF--GMKV--FYGDA   55 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHH-------------------HHHHHH----HT--TCCC--EESCT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHH-------------------HHHHHH----hC--CCeE--EEcCC
Confidence            4689999999999999999999996 5999998732                   222221    11  1221  22222


Q ss_pred             C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCC--cEEE
Q 013180          164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGL--KVLC  205 (448)
Q Consensus       164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~i--p~I~  205 (448)
                      + .+.+...-..++|+||.|+++......+...+++.+.  ++|.
T Consensus        56 t~~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           56 TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             TCHHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCHHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            2 2222222123599999999999998889999988764  4554

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=95.46  E-value=0.028  Score=52.28  Aligned_cols=89  Identities=12%  Similarity=0.053  Sum_probs=59.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|+|+|.+|..+++.|...|.  ++++|.|.-                   +++    .+.   +.+.+  +...
T Consensus         8 ~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~-------------------~~~----~~~---~~~~~--i~gd   57 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLRELRGSEV--FVLAEDENV-------------------RKK----VLR---SGANF--VHGD   57 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGG-------------------HHH----HHH---TTCEE--EESC
T ss_pred             CCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHH-------------------HHH----HHh---cCCeE--EEcC
Confidence            35689999999999999999999887  888876521                   111    111   23332  3332


Q ss_pred             CC-ccchHHH-hcCCCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180          163 YD-ASSEEEI-LSGHPDFVLDCIDNIDTKVALLAACVRRGLK  202 (448)
Q Consensus       163 ~~-~~~~~~l-l~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip  202 (448)
                      .+ .+...+. +. ++|.||.|+++......+...|++.+..
T Consensus        58 ~~~~~~l~~a~i~-~ad~vi~~~~~d~~n~~~~~~a~~~~~~   98 (234)
T 2aef_A           58 PTRVSDLEKANVR-GARAVIVDLESDSETIHCILGIRKIDES   98 (234)
T ss_dssp             TTCHHHHHHTTCT-TCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHhcCcc-hhcEEEEcCCCcHHHHHHHHHHHHHCCC
Confidence            22 2222233 33 4999999999988888888888887764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.44  E-value=0.015  Score=58.53  Aligned_cols=121  Identities=17%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEe
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~  160 (448)
                      ++..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+...        |-.-+....+.+... .|++-+.+.+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALERE--------GIAGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTT--------TCBCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHC--------CCEEeCCHHHHHhcCCCCCEEEEeCC
Confidence            456899999999999999999999994 688888764322222211        111111122222221 2444444433


Q ss_pred             ccCCccchHHHhc--CCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          161 LLYDASSEEEILS--GHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       161 ~~~~~~~~~~ll~--~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .....+....+..  .+-++|||++... .....+.+.+.+.++.++.+...|+
T Consensus        91 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           91 AAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            3211111223322  1357999988654 5556677888889999998765554

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=95.44  E-value=0.13  Score=50.56  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHH--cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLR--SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~Lar--sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      +++++|+|.|+ |++|++++..|+.  .|. +++++|...-...-.++    ..+.++...         ... ...+..
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~----~~~~~~~~~---------~~~-~~~~~~   72 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRSNTLFSNN----RPSSLGHFK---------NLI-GFKGEV   72 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCCC-----------CCCCCCGG---------GGT-TCCSEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCcccccccc----chhhhhhhh---------hcc-ccCceE
Confidence            56789999965 9999999999999  775 57777754221000000    001111110         011 112333


Q ss_pred             EeccCC-ccchHHHhcCCCCeEEEccCC---------------HHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          159 KVLLYD-ASSEEEILSGHPDFVLDCIDN---------------IDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       159 ~~~~~~-~~~~~~ll~~~~D~VIda~Dn---------------~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      +...++ .+....+...++|+||.|...               ...-..+.++|.+.+.++|..++.+..+
T Consensus        73 ~~~Dl~d~~~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg  143 (362)
T 3sxp_A           73 IAADINNPLDLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYG  143 (362)
T ss_dssp             EECCTTCHHHHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGC
T ss_pred             EECCCCCHHHHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhC
Confidence            434443 344455523359999987642               1223467788999888888866644333

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.43  E-value=0.011  Score=61.78  Aligned_cols=37  Identities=16%  Similarity=0.126  Sum_probs=29.7

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++.++|+|+|+|++|..++..|++.|--+++++|.+
T Consensus        20 ~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~   56 (467)
T 2axq_A           20 RHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRT   56 (467)
T ss_dssp             ---CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESS
T ss_pred             CCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4557799999999999999999999844479998765

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.38  E-value=0.11  Score=48.01  Aligned_cols=99  Identities=14%  Similarity=0.151  Sum_probs=62.9

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.| .|++|+.+++.|+..|--++++++.+.-....+.                         .+  .++.+...
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~-------------------------~~--~~~~~~~D   75 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY-------------------------PT--NSQIIMGD   75 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC-------------------------CT--TEEEEECC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc-------------------------cC--CcEEEEec
Confidence            46899999 5999999999999999547888776532211110                         01  23444444


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCHHH---HHHHHHHHHHcCCc-EEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNIDT---KVALLAACVRRGLK-VLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~~~---r~~l~~~c~~~~ip-~I~~~g~G  210 (448)
                      + +.+....++.+ +|+||.|......   -..+.+.|++.+.+ +|..+..+
T Consensus        76 l~d~~~~~~~~~~-~D~vv~~a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A           76 VLNHAALKQAMQG-QDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             TTCHHHHHHHHTT-CSEEEEECCSTTHHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             CCCHHHHHHHhcC-CCEEEEcCCCCchhHHHHHHHHHHHHcCCCEEEEEecce
Confidence            4 34556667775 9999987754322   23566778887764 66655544

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.37  E-value=0.04  Score=54.96  Aligned_cols=86  Identities=16%  Similarity=0.279  Sum_probs=57.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC---------CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSG---------VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsG---------Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      .-+|.|+|+|.+|+.+++.|....         +.=..+.|.+.-      +.     .+++.                .
T Consensus         3 ~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~------~~-----~~~~~----------------~   55 (332)
T 2ejw_A            3 ALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR------KP-----RAIPQ----------------E   55 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT------SC-----CSSCG----------------G
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH------Hh-----hccCc----------------c
Confidence            357999999999999999998753         333355565521      11     11110                0


Q ss_pred             eEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .+   ..     +.++++  +.|+|++|+.+..........|.++|+.++.+
T Consensus        56 ~~---~~-----d~~~ll--~iDvVve~t~~~~~a~~~~~~AL~aGKhVVta   97 (332)
T 2ejw_A           56 LL---RA-----EPFDLL--EADLVVEAMGGVEAPLRLVLPALEAGIPLITA   97 (332)
T ss_dssp             GE---ES-----SCCCCT--TCSEEEECCCCSHHHHHHHHHHHHTTCCEEEC
T ss_pred             cc---cC-----CHHHHh--CCCEEEECCCCcHHHHHHHHHHHHcCCeEEEC
Confidence            11   01     223344  49999999998876677778889999999985

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.28  E-value=0.11  Score=50.87  Aligned_cols=109  Identities=15%  Similarity=0.106  Sum_probs=65.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~  159 (448)
                      ++.++|+|.|+ |++|+++++.|+..|. +++++|...-.               ...+.+.+.+.+... .+  +++.+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~---------------~~~~~~~~~~~~~~~~~~--~~~~~   86 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATG---------------HQRNLDEVRSLVSEKQWS--NFKFI   86 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSC---------------CHHHHHHHHHHSCHHHHT--TEEEE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCcc---------------chhhHHHHhhhcccccCC--ceEEE
Confidence            56789999998 9999999999999995 67776653210               011222222222211 12  34444


Q ss_pred             eccCC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHcCCc-EEEEcCC
Q 013180          160 VLLYD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRRGLK-VLCATGA  209 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~ip-~I~~~g~  209 (448)
                      ...++ .+...+++.+ +|+||.|....                 ..-..+.++|.+.+++ +|..++.
T Consensus        87 ~~Dl~d~~~~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~  154 (352)
T 1sb8_A           87 QGDIRNLDDCNNACAG-VDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASS  154 (352)
T ss_dssp             ECCTTSHHHHHHHHTT-CSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred             ECCCCCHHHHHHHhcC-CCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccH
Confidence            44443 3445666765 99999987521                 1124567888888764 6654443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.27  E-value=0.06  Score=51.87  Aligned_cols=32  Identities=28%  Similarity=0.363  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|.|||+|.+|+.+|..|+.+|. +++++|.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~   36 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDIN   36 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            689999999999999999999997 68888765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=95.25  E-value=0.041  Score=55.19  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=52.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .++.++|+|+|+|++|..++..|...|. +++++|.+.                   .|.+.+++....   .+.+  ..
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~-------------------~r~~~~~~~~~~---~~~~--~~  218 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINV-------------------ERLSYLETLFGS---RVEL--LY  218 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHGG---GSEE--EE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCH-------------------HHHHHHHHhhCc---eeEe--ee
Confidence            4778999999999999999999999999 899977541                   244444333321   1111  11


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                        .+.++..+.+.+ +|+||+|+-..
T Consensus       219 --~~~~~~~~~~~~-~DvVI~~~~~~  241 (361)
T 1pjc_A          219 --SNSAEIETAVAE-ADLLIGAVLVP  241 (361)
T ss_dssp             --CCHHHHHHHHHT-CSEEEECCCCT
T ss_pred             --CCHHHHHHHHcC-CCEEEECCCcC
Confidence              122334455554 99999998653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=95.16  E-value=0.18  Score=49.69  Aligned_cols=79  Identities=14%  Similarity=0.109  Sum_probs=53.7

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.+.-....                              +  ...
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~------------------------------~--~~~  181 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGF-PLRCWSRSRKSWPG------------------------------V--ESY  181 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCCCCTT------------------------------C--EEE
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCchhhhh------------------------------h--hhh
Confidence            46889999999999999999999999997 57777654211100                              0  000


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAA  195 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~  195 (448)
                         ....+.++++.. .|+|+.++- +.+++..+++.
T Consensus       182 ---~~~~~l~ell~~-aDiV~l~~Plt~~t~~li~~~  214 (315)
T 3pp8_A          182 ---VGREELRAFLNQ-TRVLINLLPNTAQTVGIINSE  214 (315)
T ss_dssp             ---ESHHHHHHHHHT-CSEEEECCCCCGGGTTCBSHH
T ss_pred             ---cccCCHHHHHhh-CCEEEEecCCchhhhhhccHH
Confidence               112356677775 999998876 55666666543

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.14  E-value=0.086  Score=50.36  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .++.++|+|.|+ |.+|+++++.|+..|. +++++|...-
T Consensus         4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~   42 (321)
T 3vps_A            4 NTLKHRILITGGAGFIGGHLARALVASGE-EVTVLDDLRV   42 (321)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-CEEEECCCSS
T ss_pred             ccCCCeEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            356789999998 9999999999999996 6888776543

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.13  E-value=0.13  Score=49.72  Aligned_cols=98  Identities=24%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .+|+|.|+ |++|+++++.|+..| -+++++|.+.-...++.                       .  +  .++.+...+
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~l~-----------------------~--~--~~~~~~~Dl   65 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQRLA-----------------------Y--L--EPECRVAEM   65 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGGGG-----------------------G--G--CCEEEECCT
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhhhc-----------------------c--C--CeEEEEecC
Confidence            47999995 999999999999999 46888776432111110                       0  1  223333333


Q ss_pred             -CccchHHHhcCCCCeEEEccCC---------------HHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          164 -DASSEEEILSGHPDFVLDCIDN---------------IDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       164 -~~~~~~~ll~~~~D~VIda~Dn---------------~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                       +.+...+++.+ +|+||.|...               ...-..+.++|.+.++ .+|..++.+.
T Consensus        66 ~d~~~~~~~~~~-~d~vih~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~  129 (342)
T 2x4g_A           66 LDHAGLERALRG-LDGVIFSAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYA  129 (342)
T ss_dssp             TCHHHHHHHTTT-CSEEEEC------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGG
T ss_pred             CCHHHHHHHHcC-CCEEEECCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHh
Confidence             33445566665 8999887642               1223467788888774 6777655443

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=95.12  E-value=0.036  Score=54.88  Aligned_cols=33  Identities=24%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|+|.| .|.+|++++..|+..|.-++..+|.+
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            3799999 69999999999999997456665543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=95.09  E-value=0.095  Score=49.54  Aligned_cols=84  Identities=15%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      -.|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.                   .+.+.+.+.+.+..+ .++..
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~-~~~~~   64 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRST-------------------ADIDACVADLDQLGS-GKVIG   64 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHTTSS-SCEEE
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhCC-CcEEE
Confidence            3577888999875 8999999999999997 688876542                   344555555555431 34555


Q ss_pred             EeccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          159 KVLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      +...++. +....++.      ++.|++|.+..
T Consensus        65 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg   97 (262)
T 3pk0_A           65 VQTDVSDRAQCDALAGRAVEEFGGIDVVCANAG   97 (262)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCC
Confidence            5444433 33333322      24888887653

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.08  E-value=0.093  Score=51.03  Aligned_cols=107  Identities=16%  Similarity=0.093  Sum_probs=60.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +..++|+|.|+ |.+|+++++.|+..|.. ++..+|...... +..                    .+..+...-.++.+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~-~~~--------------------~l~~~~~~~~~~~~   80 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG-NLN--------------------NVKSIQDHPNYYFV   80 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC-CGG--------------------GGTTTTTCTTEEEE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc-chh--------------------hhhhhccCCCeEEE
Confidence            45678999998 99999999999999942 455555432111 000                    11111111234444


Q ss_pred             eccCC-ccchHHHhcC-CCCeEEEccCCH-----------------HHHHHHHHHHHHcCCc-EEEEcCC
Q 013180          160 VLLYD-ASSEEEILSG-HPDFVLDCIDNI-----------------DTKVALLAACVRRGLK-VLCATGA  209 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~~-~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~ip-~I~~~g~  209 (448)
                      ...++ .+...+++.+ ++|+||.|....                 ..-..+.++|.+.+++ +|..++.
T Consensus        81 ~~Dl~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~  150 (346)
T 4egb_A           81 KGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTD  150 (346)
T ss_dssp             ECCTTCHHHHHHHHHHHTCCEEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEG
T ss_pred             EcCCCCHHHHHHHHhhcCCCEEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCch
Confidence            44433 3344444442 489999876421                 1225677889988877 6665543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=95.01  E-value=0.069  Score=50.24  Aligned_cols=63  Identities=16%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC-ceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE-CHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~-v~v~~  158 (448)
                      .++++.++|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+.+.+.+.++. .++..
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~   63 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARS-------------------KQNLEKVHDEIMRSNKHVQEPIV   63 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSCCCEE
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhccccCcceE
Confidence            466788999976 8999999999999997 67776653                   23556666677666554 44444


Q ss_pred             EeccC
Q 013180          159 KVLLY  163 (448)
Q Consensus       159 ~~~~~  163 (448)
                      +...+
T Consensus        64 ~~~Dv   68 (250)
T 3nyw_A           64 LPLDI   68 (250)
T ss_dssp             EECCT
T ss_pred             EeccC
Confidence            44443

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=95.01  E-value=0.056  Score=52.33  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=58.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEEEe
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~~~  160 (448)
                      +.||+|+|| |.+|..++..+... |+.=..++|.+.-.   +.      ..|+|..         ..+. ..+.+  . 
T Consensus         5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~---~~------g~d~~~~---------~g~~~~~v~~--~-   63 (273)
T 1dih_A            5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSS---LL------GSDAGEL---------AGAGKTGVTV--Q-   63 (273)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCT---TC------SCCTTCS---------SSSSCCSCCE--E-
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchh---hh------hhhHHHH---------cCCCcCCcee--c-
Confidence            458999999 99999999998754 43222366654211   00      1122110         0000 01111  1 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                           ++.++++. ++|+|||++ +++.-..+..+|.++|+|++.+.
T Consensus        64 -----~dl~~~l~-~~DvVIDft-~p~~~~~~~~~a~~~G~~vVigT  103 (273)
T 1dih_A           64 -----SSLDAVKD-DFDVFIDFT-RPEGTLNHLAFCRQHGKGMVIGT  103 (273)
T ss_dssp             -----SCSTTTTT-SCSEEEECS-CHHHHHHHHHHHHHTTCEEEECC
T ss_pred             -----CCHHHHhc-CCCEEEEcC-ChHHHHHHHHHHHhCCCCEEEEC
Confidence                 12234454 499999999 56677888899999999998854

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.00  E-value=0.13  Score=51.04  Aligned_cols=37  Identities=27%  Similarity=0.458  Sum_probs=32.3

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       136 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  172 (324)
T 3hg7_A          136 QGLKGRTLLILGTGSIGQHIAHTGKHFGM-KVLGVSRS  172 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccccceEEEEEECHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            46889999999999999999999999997 57777654

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=95.00  E-value=0.12  Score=50.12  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=29.7

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCC------ceEEEEeCC
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGV------GRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGV------g~i~LiD~D  117 (448)
                      +++++|+|.| .|++|+++++.|+..|.      -+++++|.+
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~   54 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVF   54 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESS
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEcc
Confidence            4567899998 59999999999999983      578887754

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=94.97  E-value=0.11  Score=49.42  Aligned_cols=85  Identities=14%  Similarity=0.129  Sum_probs=53.4

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ..+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+.....++..
T Consensus        28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~   87 (279)
T 1xg5_A           28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTV-------------------GNIEELAAECKSAGYPGTLIP   87 (279)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHTTCSSEEEE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCh-------------------HHHHHHHHHHHhcCCCceEEE
Confidence            3578899999975 8999999999999996 577765431                   234445555655544345555


Q ss_pred             EeccCC-ccchHHHhc------CCCCeEEEccC
Q 013180          159 KVLLYD-ASSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       159 ~~~~~~-~~~~~~ll~------~~~D~VIda~D  184 (448)
                      +...++ .+....++.      +.+|+||.+..
T Consensus        88 ~~~Dl~~~~~v~~~~~~~~~~~g~iD~vi~~Ag  120 (279)
T 1xg5_A           88 YRCDLSNEEDILSMFSAIRSQHSGVDICINNAG  120 (279)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred             EEecCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            544443 233333332      24788876653

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=94.96  E-value=0.15  Score=49.11  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=28.5

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~   36 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRR   36 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            4678999998 9999999999999995 67777653

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=94.90  E-value=0.026  Score=58.46  Aligned_cols=35  Identities=20%  Similarity=0.257  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.++|+|+|+|++|+.++..|+..|. +++++|.+.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~   36 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL   36 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCH
Confidence            45789999999999999999999995 599988763

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.89  E-value=0.12  Score=49.94  Aligned_cols=107  Identities=19%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEe
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKV  160 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~  160 (448)
                      .+++|+|.|+ |++|+++++.|+..|. +++++|.+.-..                   ....+.+.+. .+.  ++.+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~--~~~~~   61 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSK-------------------REAIARIEKITGKT--PAFHE   61 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSC-------------------THHHHHHHHHHSCC--CEEEC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcch-------------------HHHHHHHHhhcCCC--ceEEE
Confidence            3568999985 9999999999999995 477765432110                   0111222222 223  33333


Q ss_pred             ccC-CccchHHHhc-CCCCeEEEccCC-----------------HHHHHHHHHHHHHcCC-cEEEEcCCCC
Q 013180          161 LLY-DASSEEEILS-GHPDFVLDCIDN-----------------IDTKVALLAACVRRGL-KVLCATGAGA  211 (448)
Q Consensus       161 ~~~-~~~~~~~ll~-~~~D~VIda~Dn-----------------~~~r~~l~~~c~~~~i-p~I~~~g~G~  211 (448)
                      ..+ +.+...+++. .++|+||.+...                 ...-..+.++|++.+. .+|..++.+.
T Consensus        62 ~Dl~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~  132 (341)
T 3enk_A           62 TDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATV  132 (341)
T ss_dssp             CCTTCHHHHHHHHHHSCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             eecCCHHHHHHHHhccCCcEEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceE
Confidence            333 3344555554 248999987742                 2233467788888875 5666554433

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=94.89  E-value=0.2  Score=47.43  Aligned_cols=97  Identities=16%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      +|+|.|+ |++|+.+++.|...+-.++++++.+.-....+                         ..+.++  .+...+ 
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-------------------------~~~~v~--~~~~D~~   54 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-------------------------WRGKVS--VRQLDYF   54 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-------------------------GBTTBE--EEECCTT
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-------------------------hhCCCE--EEEcCCC
Confidence            6999996 99999999999998335677766543211110                         012333  333333 


Q ss_pred             CccchHHHhcCCCCeEEEccCC-------HHHHHHHHHHHHHcCCc-EEEEcCCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDN-------IDTKVALLAACVRRGLK-VLCATGAG  210 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn-------~~~r~~l~~~c~~~~ip-~I~~~g~G  210 (448)
                      +.+.....+.+ +|+||.|...       ...-..+.++|.+.+++ +|..+..|
T Consensus        55 d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           55 NQESMVEAFKG-MDTVVFIPSIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CHHHHHHHTTT-CSEEEECCCCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CHHHHHHHHhC-CCEEEEeCCCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            34556666775 9999998753       23345677889888864 66655444

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.86  E-value=0.072  Score=52.38  Aligned_cols=33  Identities=36%  Similarity=0.446  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus         4 ~mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~   36 (359)
T 1bg6_A            4 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDID   36 (359)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            3689999999999999999999995 58887754

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=94.86  E-value=0.082  Score=50.07  Aligned_cols=83  Identities=16%  Similarity=0.314  Sum_probs=57.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+.+.+.+..+...+..+
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   66 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRR-------------------EENVNETIKEIRAQYPDAILQPV   66 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhhCCCceEEEE
Confidence            367788899886 8999999999999996 47776543                   23556667777777777777766


Q ss_pred             eccCCc-cchHHHhc--CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS--GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~--~~~D~VIda~  183 (448)
                      ...++. +...+++.  ++.|++|.+.
T Consensus        67 ~~D~~~~~~~~~~~~~~g~id~lv~nA   93 (267)
T 3t4x_A           67 VADLGTEQGCQDVIEKYPKVDILINNL   93 (267)
T ss_dssp             ECCTTSHHHHHHHHHHCCCCSEEEECC
T ss_pred             ecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence            655543 23333332  2478888664

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=94.86  E-value=0.099  Score=47.52  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=55.0

Q ss_pred             cEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|+|+| +|.+|+.++..|++.|. +++++|.+.                   .|.+.+.+.+....+...+..      
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~------   55 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRRE-------------------EKAEAKAAEYRRIAGDASITG------   55 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSH-------------------HHHHHHHHHHHHHHSSCCEEE------
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHhccccccCCCCh------
Confidence            699999 99999999999999996 688876542                   122222222110001111221      


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH-HcCCcEEEEc
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACV-RRGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~-~~~ip~I~~~  207 (448)
                       .+..+.+.+ +|+||.|+.....+..+.+... -.+..+++..
T Consensus        56 -~~~~~~~~~-~D~Vi~~~~~~~~~~~~~~l~~~~~~~~vi~~~   97 (212)
T 1jay_A           56 -MKNEDAAEA-CDIAVLTIPWEHAIDTARDLKNILREKIVVSPL   97 (212)
T ss_dssp             -EEHHHHHHH-CSEEEECSCHHHHHHHHHHTHHHHTTSEEEECC
T ss_pred             -hhHHHHHhc-CCEEEEeCChhhHHHHHHHHHHHcCCCEEEEcC
Confidence             233445554 9999999987666554443321 1366666543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=94.83  E-value=0.12  Score=50.77  Aligned_cols=34  Identities=38%  Similarity=0.623  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D  117 (448)
                      ..||.|||+|.+|+.++..|+..| +++|.++|-+
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            368999999999999999999988 4689998865

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=94.80  E-value=0.087  Score=52.36  Aligned_cols=76  Identities=20%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC---CceEE
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP---ECHID  157 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP---~v~v~  157 (448)
                      -...||.|+|+|.+|+.+|..|+..|+ ++|.|+|-+                   ..|++..+.-|....|   .+++.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~~i~   67 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLEDALPFTSPKKIY   67 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC-------------------hHHHHHHHhhHhhhhhhcCCcEEE
Confidence            345789999999999999999999997 589998763                   2456655566665544   33332


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        ..     . .+-+.+ .|+||-+...
T Consensus        68 --~~-----~-~~a~~~-aDiVvi~ag~   86 (326)
T 3vku_A           68 --SA-----E-YSDAKD-ADLVVITAGA   86 (326)
T ss_dssp             --EC-----C-GGGGTT-CSEEEECCCC
T ss_pred             --EC-----c-HHHhcC-CCEEEECCCC
Confidence              21     1 122444 9999988653

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=94.79  E-value=0.088  Score=53.13  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=31.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|+|+|+|.+|+.+|+.|...|.. +.+.|.|
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~Gak-Vvv~D~~  205 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVN  205 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCE-EEEEcCC
Confidence            37789999999999999999999999985 7788854

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=94.78  E-value=0.2  Score=46.95  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=28.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   47 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN   47 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788888865 8999999999999996 57776643

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.78  E-value=0.077  Score=51.54  Aligned_cols=32  Identities=28%  Similarity=0.482  Sum_probs=28.9

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.||| +|.+|+.++..|++.|. +++++|.+
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~-~V~~~~~~   54 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   54 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            5899999 99999999999999997 68888765

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=94.77  E-value=0.16  Score=46.80  Aligned_cols=35  Identities=29%  Similarity=0.437  Sum_probs=29.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRT   40 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67789999987 8999999999999996 57777643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.76  E-value=0.063  Score=51.52  Aligned_cols=32  Identities=19%  Similarity=0.225  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++|+|.|+ |++|+++++.|+..| -+++++|.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r   34 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGF   34 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEcc
Confidence            468999998 999999999999999 46777764

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=94.75  E-value=0.085  Score=52.41  Aligned_cols=75  Identities=24%  Similarity=0.243  Sum_probs=50.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc--eEEEEe
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC--HIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v--~v~~~~  160 (448)
                      ..+|.|+|+|.+|+.+|..|+..|. +++.|+|-+                   ..|++..+.-|++..|..  .+....
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~-------------------~~k~~g~a~DL~~~~~~~~~~v~i~~   65 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN-------------------KEKAMGDVMDLNHGKAFAPQPVKTSY   65 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGSSSCCEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc-------------------hHHHHHHHHHHHhccccccCCeEEEe
Confidence            4689999999999999999999997 589998754                   245555555555544432  222222


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      ..     . +-+.+ .|+||-|..
T Consensus        66 ~~-----~-~a~~~-aDvVvi~ag   82 (326)
T 3pqe_A           66 GT-----Y-EDCKD-ADIVCICAG   82 (326)
T ss_dssp             EC-----G-GGGTT-CSEEEECCS
T ss_pred             Cc-----H-HHhCC-CCEEEEecc
Confidence            21     1 23444 999998875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=94.70  E-value=0.23  Score=47.94  Aligned_cols=82  Identities=23%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .++++.|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+.+.+.+...  ++..+
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~   85 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVD-------------------QPALEQAVNGLRGQGF--DAHGV   85 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEE
Confidence            367889999986 7999999999999996 47776543                   2345555566655543  34444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ...++. +...+++.      +..|+||.+..
T Consensus        86 ~~Dv~d~~~v~~~~~~~~~~~g~id~lvnnAg  117 (301)
T 3tjr_A           86 VCDVRHLDEMVRLADEAFRLLGGVDVVFSNAG  117 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCSEEEECCC
T ss_pred             EccCCCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            444433 33333332      25898887754

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=94.66  E-value=0.16  Score=49.82  Aligned_cols=32  Identities=34%  Similarity=0.591  Sum_probs=29.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ||.|+|+|.+|+.++..|+..|.++|.|+|-|
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~   32 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIART   32 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            68999999999999999999999669999865

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=94.66  E-value=0.15  Score=48.17  Aligned_cols=83  Identities=18%  Similarity=0.251  Sum_probs=55.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+.++..++..+
T Consensus         5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   64 (265)
T 3lf2_A            5 DLSEAVAVVTGGSSGIGLATVELLLEAGAA-VAFCARD-------------------GERLRAAESALRQRFPGARLFAS   64 (265)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CcCCCEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHHhcCCceEEEE
Confidence            367888999975 79999999999999974 7776653                   24556666777776666666666


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        65 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA   95 (265)
T 3lf2_A           65 VCDVLDALQVRAFAEACERTLGCASILVNNA   95 (265)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCSCSEEEECC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            555433 22333321      2477777654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.63  E-value=0.11  Score=51.62  Aligned_cols=37  Identities=22%  Similarity=0.397  Sum_probs=32.5

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       133 ~~l~gktvGIiGlG~IG~~vA~~l~~~G~-~V~~~dr~  169 (324)
T 3evt_A          133 STLTGQQLLIYGTGQIGQSLAAKASALGM-HVIGVNTT  169 (324)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccccCCeEEEECcCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            46889999999999999999999999997 57777754

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=94.59  E-value=0.06  Score=51.74  Aligned_cols=32  Identities=28%  Similarity=0.383  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRS   33 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            589999999999999999999995 67887765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.58  E-value=0.033  Score=49.71  Aligned_cols=32  Identities=31%  Similarity=0.388  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|+|||+|..|..+|..|++.|+ +++|+|..
T Consensus         3 ~dV~IIGaGpaGL~aA~~La~~G~-~V~v~Ek~   34 (336)
T 3kkj_A            3 VPIAIIGTGIAGLSAAQALTAAGH-QVHLFDKS   34 (336)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECC
Confidence            569999999999999999999998 59999954

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.57  E-value=0.2  Score=49.68  Aligned_cols=95  Identities=24%  Similarity=0.305  Sum_probs=57.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|.|+|++|..+++.+...|..++..+|.+                   ..|.+.+++    +.+.+ +......
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~-------------------~~~~~~a~~----l~~~~-~~~~~~~  234 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDID-------------------EGRLKFAKE----ICPEV-VTHKVER  234 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESC-------------------HHHHHHHHH----HCTTC-EEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHH----hchhc-ccccccc
Confidence            36899999999999999999999999888887654                   224444433    22222 1111111


Q ss_pred             CCccchH----HHh-cCCCCeEEEccCCHHHHHHHHHHHHHcCC
Q 013180          163 YDASSEE----EIL-SGHPDFVLDCIDNIDTKVALLAACVRRGL  201 (448)
Q Consensus       163 ~~~~~~~----~ll-~~~~D~VIda~Dn~~~r~~l~~~c~~~~i  201 (448)
                      .+.++..    ++. ...+|+||||+.+..+-....+..+..|.
T Consensus       235 ~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~  278 (363)
T 3m6i_A          235 LSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGK  278 (363)
T ss_dssp             CCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCE
T ss_pred             cchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCE
Confidence            1112211    122 22599999999987665555555555554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.55  E-value=0.23  Score=49.23  Aligned_cols=97  Identities=15%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.|+ |++|+++++.|+..|. +++++|.+.-....     .                    ..+.++  .+...
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~-----~--------------------~~~~v~--~~~~D   80 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-----E--------------------DMFCDE--FHLVD   80 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-----G--------------------GGTCSE--EEECC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHCCC-eEEEEECCCccchh-----h--------------------ccCCce--EEECC
Confidence            468999998 9999999999999995 68887764311100     0                    011222  23333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCC----------HH--------HHHHHHHHHHHcCC-cEEEEcCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDN----------ID--------TKVALLAACVRRGL-KVLCATGA  209 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn----------~~--------~r~~l~~~c~~~~i-p~I~~~g~  209 (448)
                      + +.+...+++.+ +|+||.|...          ..        .-..+.+.|.+.++ .+|..++.
T Consensus        81 l~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~  146 (379)
T 2c5a_A           81 LRVMENCLKVTEG-VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSA  146 (379)
T ss_dssp             TTSHHHHHHHHTT-CSEEEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred             CCCHHHHHHHhCC-CCEEEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeeh
Confidence            3 33445566664 8999987542          11        12356788888876 56664443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.55  E-value=0.09  Score=51.30  Aligned_cols=113  Identities=19%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ..||.+||+|-.|+.+|.+|+++|. +++++|.+.=....+.        +.|-.-++    .+.+....+++....- -
T Consensus         5 s~kIgfIGLG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~--------~~G~~~~~----s~~e~~~~~dvvi~~l-~   70 (297)
T 4gbj_A            5 SEKIAFLGLGNLGTPIAEILLEAGY-ELVVWNRTASKAEPLT--------KLGATVVE----NAIDAITPGGIVFSVL-A   70 (297)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHTTC-EEEEC-------CTTT--------TTTCEECS----SGGGGCCTTCEEEECC-S
T ss_pred             CCcEEEEecHHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH--------HcCCeEeC----CHHHHHhcCCceeeec-c
Confidence            4689999999999999999999996 4788775433222222        12221111    1222222334432211 1


Q ss_pred             CccchHH--------HhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 DASSEEE--------ILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~~~~~~~--------ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +.....+        .+. +-++|||++. ++.+...+.+.+.++|+-++++.-.|+
T Consensus        71 ~~~~~~~v~~~~~~~~~~-~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg  126 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLG-KDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFAR  126 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHC-TTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECC
T ss_pred             chhhHHHHHHHHHHhhcC-CCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCC
Confidence            1111111        122 3578888776 677788899999999999999766554

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=94.54  E-value=0.23  Score=47.01  Aligned_cols=36  Identities=17%  Similarity=0.460  Sum_probs=29.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (278)
T 1spx_A            3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH   39 (278)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467788888876 8999999999999996 57776654

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=94.48  E-value=0.22  Score=47.36  Aligned_cols=107  Identities=23%  Similarity=0.319  Sum_probs=64.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.|+ |.+|+++++.|+..| .++++++.+.-..    +         ...|.+.+. .+.  .+.+++  +...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~----~---------~~~~~~~~~-~l~--~~~v~~--v~~D   64 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTAS----S---------NSEKAQLLE-SFK--ASGANI--VHGS   64 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTT----T---------THHHHHHHH-HHH--TTTCEE--ECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccc----c---------CHHHHHHHH-HHH--hCCCEE--EEec
Confidence            468999997 999999999999999 4577755432100    0         012333222 121  234443  3333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcC-CcEEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG-LKVLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~-ip~I~~~g~G  210 (448)
                      + +.+.....+.+ +|+||.|....  .....+.++|.+.+ ++.|-.+..|
T Consensus        65 ~~d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g  115 (308)
T 1qyc_A           65 IDDHASLVEAVKN-VDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFG  115 (308)
T ss_dssp             TTCHHHHHHHHHT-CSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCS
T ss_pred             cCCHHHHHHHHcC-CCEEEECCcchhhhhHHHHHHHHHhcCCCceEeecccc
Confidence            3 34556667776 99999998753  33456778888887 6644433333

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.47  E-value=0.29  Score=46.67  Aligned_cols=101  Identities=19%  Similarity=0.196  Sum_probs=63.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.|+ |.+|++++..|...| -++++++.+.-.              -...|.+.+. .+.  .+.+++  +...
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~--------------~~~~~~~~~~-~~~--~~~~~~--~~~D   63 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVV--------------SNIDKVQMLL-YFK--QLGAKL--IEAS   63 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCS--------------SCHHHHHHHH-HHH--TTTCEE--ECCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcc--------------cchhHHHHHH-HHH--hCCeEE--EeCC
Confidence            468999996 999999999999999 457775543100              0011332221 121  234443  3333


Q ss_pred             C-CccchHHHhcCCCCeEEEccC------CHHHHHHHHHHHHHcC-CcEEE
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID------NIDTKVALLAACVRRG-LKVLC  205 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D------n~~~r~~l~~~c~~~~-ip~I~  205 (448)
                      + +.+...+.+.+ +|+||.+..      |...-..+.++|.+.+ ++.|-
T Consensus        64 ~~d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           64 LDDHQRLVDALKQ-VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             SSCHHHHHHHHTT-CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             CCCHHHHHHHHhC-CCEEEECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            3 34556677776 999999875      4455567888999988 65443

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=94.46  E-value=0.27  Score=47.79  Aligned_cols=38  Identities=26%  Similarity=0.333  Sum_probs=28.7

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...++.++|+|.|+ |.+|+++++.|+..|. +++++|..
T Consensus        22 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   60 (343)
T 2b69_A           22 HMEKDRKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF   60 (343)
T ss_dssp             -----CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccccCCCEEEEEcCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34456789999998 9999999999999995 67777653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=94.45  E-value=0.1  Score=48.99  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=28.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r   53 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYG   53 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcC
Confidence            66788999976 8999999999999996 5777654

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.43  E-value=0.12  Score=50.45  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~  154 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRS  154 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCc-EEEEEecc
Confidence            45889999999999999999999999997 57777754

>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*

Probab=94.42  E-value=0.3  Score=44.90  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..++++|+|+||-|..++..|.+.|..-+.++|+|.-. ..     +.                      .+.|-.    
T Consensus        11 ~~k~v~IiGAGg~g~~v~~~l~~~~~~~vgfiDd~~~~-~~-----~~----------------------g~~Vlg----   58 (220)
T 4ea9_A           11 AIGGVVIIGGGGHAKVVIESLRACGETVAAIVDADPTR-RA-----VL----------------------GVPVVG----   58 (220)
T ss_dssp             CSSCEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC----C-----BT----------------------TBCEEE----
T ss_pred             CCCCEEEEcCCHHHHHHHHHHHhCCCEEEEEEeCCccc-Cc-----CC----------------------CeeEEC----
Confidence            44689999999999999999999998889999987321 11     11                      122211    


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                       ..+...++.....+.++-++.+...|..+.+.+...+..+..
T Consensus        59 -~~~~~~~~~~~~~~~v~iAIg~~~~R~~i~~~l~~~g~~~~~  100 (220)
T 4ea9_A           59 -DDLALPMLREQGLSRLFVAIGDNRLRQKLGRKARDHGFSLVN  100 (220)
T ss_dssp             -SGGGHHHHHHTTCCEEEECCCCHHHHHHHHHHHHHTTCEECC
T ss_pred             -CHHHHHHhhcccccEEEEecCCHHHHHHHHHHHHhcCCCcCC
Confidence             223344444433567788999999999999999998876543

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=94.41  E-value=0.08  Score=49.97  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=61.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHc--CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRS--GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~Lars--GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++|+|.|+ |.+|+++++.|+..  | -+++++|.+.   +                |...    +..  +.++  .+..
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~---~----------------~~~~----l~~--~~~~--~~~~   52 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNV---E----------------KAST----LAD--QGVE--VRHG   52 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCT---T----------------TTHH----HHH--TTCE--EEEC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCH---H----------------HHhH----Hhh--cCCe--EEEe
Confidence            46999997 99999999999998  7 4677766531   1                1111    111  2233  3333


Q ss_pred             cC-CccchHHHhcCCCCeEEEccC-------CHHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          162 LY-DASSEEEILSGHPDFVLDCID-------NIDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       162 ~~-~~~~~~~ll~~~~D~VIda~D-------n~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      .+ +.+...+.+.+ +|+||.+..       |...-..+.++|.+.++ .+|..++.+
T Consensus        53 D~~d~~~l~~~~~~-~d~vi~~a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~  109 (287)
T 2jl1_A           53 DYNQPESLQKAFAG-VSKLLFISGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYAF  109 (287)
T ss_dssp             CTTCHHHHHHHTTT-CSEEEECCCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred             ccCCHHHHHHHHhc-CCEEEEcCCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            33 33455666765 999998875       44455677888988886 566655443

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=94.38  E-value=0.14  Score=47.64  Aligned_cols=81  Identities=19%  Similarity=0.282  Sum_probs=53.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++++++|+|.|+ ||+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..+
T Consensus         6 ~~~~k~vlITGas~giG~~~a~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   63 (253)
T 3qiv_A            6 RFENKVGIVTGSGGGIGQAYAEALAREGAA-VVVADIN-------------------AEAAEAVAKQIVADGG--TAISV   63 (253)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEcCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            467889999987 89999999999999975 7776643                   2345555666665554  34444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      ++.|+||.+.
T Consensus        64 ~~D~~~~~~~~~~~~~~~~~~g~id~li~~A   94 (253)
T 3qiv_A           64 AVDVSDPESAKAMADRTLAEFGGIDYLVNNA   94 (253)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            444432 33333332      2488888765

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=94.38  E-value=0.25  Score=48.97  Aligned_cols=104  Identities=22%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +++.++|+|.|+ |++|+++++.|+..|.-+++++|...-..    ...+.                   ..+  +++.+
T Consensus        29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~----~~~l~-------------------~~~--~v~~~   83 (377)
T 2q1s_A           29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAE----KINVP-------------------DHP--AVRFS   83 (377)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCC----GGGSC-------------------CCT--TEEEE
T ss_pred             HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCc----hhhcc-------------------CCC--ceEEE
Confidence            466789999996 99999999999999955688876542110    00000                   012  23333


Q ss_pred             eccCC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHc-CC-cEEEEcCCC
Q 013180          160 VLLYD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRR-GL-KVLCATGAG  210 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~-~i-p~I~~~g~G  210 (448)
                      ...++ .+...+++.+ +|+||.|....                 ..-..+.++|.+. ++ .+|..++.+
T Consensus        84 ~~Dl~d~~~l~~~~~~-~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~  153 (377)
T 2q1s_A           84 ETSITDDALLASLQDE-YDYVFHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGC  153 (377)
T ss_dssp             CSCTTCHHHHHHCCSC-CSEEEECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC-
T ss_pred             ECCCCCHHHHHHHhhC-CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHH
Confidence            33333 3334455554 99999876532                 1124567888877 65 566655443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=94.37  E-value=0.16  Score=49.89  Aligned_cols=34  Identities=24%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.+|..|++.|.-+++++|.+
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~   57 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLR   57 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred             CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            4789999999999999999999995578888765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=94.36  E-value=0.16  Score=48.31  Aligned_cols=83  Identities=16%  Similarity=0.156  Sum_probs=51.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .++++.|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..|.+.+.+.+.+.++ .++..+
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~-~~~~~~   67 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRD-------------------VTKGHEAVEKLKNSNH-ENVVFH   67 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTC-CSEEEE
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEE
Confidence            467888999886 8999999999999997 67776654                   2345555566665543 245555


Q ss_pred             eccCCc--cchHHHhc------CCCCeEEEccC
Q 013180          160 VLLYDA--SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~--~~~~~ll~------~~~D~VIda~D  184 (448)
                      ...++.  +....++.      +..|+||.+..
T Consensus        68 ~~Dl~~~~~~v~~~~~~~~~~~g~iD~lv~nAg  100 (311)
T 3o26_A           68 QLDVTDPIATMSSLADFIKTHFGKLDILVNNAG  100 (311)
T ss_dssp             ECCTTSCHHHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred             EccCCCcHHHHHHHHHHHHHhCCCCCEEEECCc
Confidence            444433  22222221      34888887654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=94.34  E-value=0.073  Score=50.25  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=52.8

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +..+++++|+|.|+ ||+|.++++.|+..|.. +.++|.+                   ..+.+.+.+.+.+..+  ++.
T Consensus        24 m~~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~   81 (262)
T 3rkr_A           24 MSSLSGQVAVVTGASRGIGAAIARKLGSLGAR-VVLTARD-------------------VEKLRAVEREIVAAGG--EAE   81 (262)
T ss_dssp             -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--EEE
T ss_pred             hhccCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHhCC--cee
Confidence            44578899999986 89999999999999975 7776653                   2355566666666554  344


Q ss_pred             EEeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          158 AKVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       158 ~~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      .+...++. +....++.      ++.|+||.+.
T Consensus        82 ~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~~A  114 (262)
T 3rkr_A           82 SHACDLSHSDAIAAFATGVLAAHGRCDVLVNNA  114 (262)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EEEecCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            44444432 22333221      2477777654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=94.29  E-value=0.22  Score=46.80  Aligned_cols=35  Identities=37%  Similarity=0.533  Sum_probs=29.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRN   40 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788999976 7999999999999996 57776643

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=94.26  E-value=0.42  Score=45.39  Aligned_cols=107  Identities=14%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCc-hHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGT-PKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~-~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .++|+|.|+ |++|+++++.|+..| -++++++.+.-..             -.. .|.+.++ .+.  .+.+++  +..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~-------------~~~~~~~~~~~-~l~--~~~v~~--v~~   62 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITA-------------ANPETKEELID-NYQ--SLGVIL--LEG   62 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCS-------------SCHHHHHHHHH-HHH--HTTCEE--EEC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCccc-------------CChHHHHHHHH-HHH--hCCCEE--EEe
Confidence            468999997 999999999999999 4677765432000             000 2333322 222  233443  333


Q ss_pred             cC-CccchHHHhcCCCCeEEEccCC--HHHHHHHHHHHHHcC-CcEEEEcCCC
Q 013180          162 LY-DASSEEEILSGHPDFVLDCIDN--IDTKVALLAACVRRG-LKVLCATGAG  210 (448)
Q Consensus       162 ~~-~~~~~~~ll~~~~D~VIda~Dn--~~~r~~l~~~c~~~~-ip~I~~~g~G  210 (448)
                      .+ +.+.....+.+ +|+||.+...  ......+.++|.+.+ ++.+-.+..|
T Consensus        63 D~~d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g  114 (307)
T 2gas_A           63 DINDHETLVKAIKQ-VDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFFPSEFG  114 (307)
T ss_dssp             CTTCHHHHHHHHTT-CSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEECSCCS
T ss_pred             CCCCHHHHHHHHhC-CCEEEECCcccccccHHHHHHHHHhcCCceEEeecccc
Confidence            33 34556677776 9999998864  445567778888887 6544433333

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=94.26  E-value=0.37  Score=44.07  Aligned_cols=35  Identities=17%  Similarity=-0.031  Sum_probs=28.0

Q ss_pred             hCCcEEEEc-CChHHHHHHHHHHHcC-CceEEEEeCC
Q 013180           83 SGSYVVVIG-LGGVGSHAAAMLLRSG-VGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG-~GGvGs~va~~LarsG-Vg~i~LiD~D  117 (448)
                      ..++|+|.| .|++|+++++.|+..| --++++++.+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~   39 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRS   39 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcC
Confidence            457899998 5999999999999995 2467776654

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.21  E-value=0.32  Score=47.62  Aligned_cols=133  Identities=16%  Similarity=0.093  Sum_probs=77.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +..+|.|||+|.+|...+..|... ++.-+.++|.+                   ..|++.+++...-  |        .
T Consensus         4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~~~~~~~--~--------~   54 (330)
T 3e9m_A            4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRR-------------------LENAQKMAKELAI--P--------V   54 (330)
T ss_dssp             CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSS-------------------SHHHHHHHHHTTC--C--------C
T ss_pred             CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCC-------------------HHHHHHHHHHcCC--C--------c
Confidence            346899999999999999999886 33323344443                   2344444433210  1        0


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                        ...+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+..-...-++|
T Consensus        55 --~~~~~~~ll~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p  131 (330)
T 3e9m_A           55 --AYGSYEELCKDETIDIIYIPTYNQ-GHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLP  131 (330)
T ss_dssp             --CBSSHHHHHHCTTCSEEEECCCGG-GHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCH
T ss_pred             --eeCCHHHHhcCCCCCEEEEcCCCH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCH
Confidence              1134556664 2489999998875 345555677788888887332221000          1122233333445788


Q ss_pred             hhHHHHHHHhhhcCccCCe
Q 013180          231 LSRAVMHRLRKDYGIEGGI  249 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i  249 (448)
                      ..+.+|+.++.  |..|.+
T Consensus       132 ~~~~~k~~i~~--g~iG~i  148 (330)
T 3e9m_A          132 ITQKVKATIQE--GGLGEI  148 (330)
T ss_dssp             HHHHHHHHHHT--TTTCSE
T ss_pred             HHHHHHHHHhC--CCCCCe
Confidence            88888888865  444544

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.11  E-value=0.21  Score=51.56  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=64.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHc---CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh-hCCCceE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRS---GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS-IFPECHI  156 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~Lars---GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~-inP~v~v  156 (448)
                      .+.++|+|.|+ |++|++++..|++.   | .++.+++...-....+.|..  ..-.-|.+  +.. +.+.. ..+  ++
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~--~~~~~~~~--~~~-~~~~~~~~~--~v  142 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLE--KTFDSGDP--ELL-RHFKELAAD--RL  142 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHH--GGGCSSCH--HHH-HHHHHHHTT--TE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHH--HHHHhcch--hhh-hhhhhhccC--ce
Confidence            45789999996 89999999999998   4 46777665422111111100  00000111  111 11111 122  45


Q ss_pred             EEEeccCC-------ccchHHHhcCCCCeEEEccC-------------CHHHHHHHHHHHHHcCC-cEEEEcC
Q 013180          157 DAKVLLYD-------ASSEEEILSGHPDFVLDCID-------------NIDTKVALLAACVRRGL-KVLCATG  208 (448)
Q Consensus       157 ~~~~~~~~-------~~~~~~ll~~~~D~VIda~D-------------n~~~r~~l~~~c~~~~i-p~I~~~g  208 (448)
                      +.+...++       .+...+++.+ +|+||.|..             |...-..+.++|.+.++ ++|..++
T Consensus       143 ~~v~~Dl~~~~~gld~~~~~~~~~~-~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          143 EVVAGDKSEPDLGLDQPMWRRLAET-VDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             EEEECCTTSGGGGCCHHHHHHHHHH-CCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             EEEEeECCCcccCCCHHHHHHHHcC-CCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            55544443       3345556664 999998864             23344567788888775 5655443

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=94.09  E-value=0.16  Score=48.76  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=26.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +++|+|.|+ |.+|+++++.|+..|. ++++++.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~-~v~~~~r   35 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   35 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC-eEEEEec
Confidence            468999985 9999999999999986 4666553

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=94.07  E-value=0.15  Score=48.07  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.| .|++|+++++.|++.|. ++.++|.+.....                            .+  +++.+...
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~-~V~~~~r~~~~~~----------------------------~~--~~~~~~~D   51 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE-ILRLADLSPLDPA----------------------------GP--NEECVQCD   51 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE-EEEEEESSCCCCC----------------------------CT--TEEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC-EEEEEecCCcccc----------------------------CC--CCEEEEcC
Confidence            46789998 69999999999999984 6888775532211                            11  23334333


Q ss_pred             C-CccchHHHhcCCCCeEEEccC-------------CHHHHHHHHHHHHHcCC-cEEEEcC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID-------------NIDTKVALLAACVRRGL-KVLCATG  208 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D-------------n~~~r~~l~~~c~~~~i-p~I~~~g  208 (448)
                      + +.+...+++.+ +|+||.+..             |...-..+.+.|++.+. .+|+.++
T Consensus        52 l~d~~~~~~~~~~-~D~vi~~Ag~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS  111 (267)
T 3rft_A           52 LADANAVNAMVAG-CDGIVHLGGISVEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASS  111 (267)
T ss_dssp             TTCHHHHHHHHTT-CSEEEECCSCCSCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCHHHHHHHHcC-CCEEEECCCCcCcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            3 33445556664 888887642             22233467788888775 5665443

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.06  E-value=0.5  Score=46.07  Aligned_cols=37  Identities=22%  Similarity=0.164  Sum_probs=31.3

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+++++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus         5 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   42 (357)
T 1rkx_A            5 SFWQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLT   42 (357)
T ss_dssp             HHHTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hhhCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3567889999985 9999999999999995 68887754

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.05  E-value=0.34  Score=46.70  Aligned_cols=99  Identities=18%  Similarity=0.262  Sum_probs=60.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++|+|.|+ |.+|+++++.|+.. |. +++++|.+.-.   +..  +.                   -.+  .++.+...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~---~~~--~~-------------------~~~--~~~~~~~D   53 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA---ISR--FL-------------------NHP--HFHFVEGD   53 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG---GGG--GT-------------------TCT--TEEEEECC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcch---HHH--hh-------------------cCC--CeEEEecc
Confidence            37999998 99999999999998 64 68877754211   100  00                   012  24444444


Q ss_pred             CCc--cchHHHhcCCCCeEEEccCC--H---------------HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          163 YDA--SSEEEILSGHPDFVLDCIDN--I---------------DTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       163 ~~~--~~~~~ll~~~~D~VIda~Dn--~---------------~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ++.  +...+.+.+ +|+||.|...  .               ..-..+.+.|.+.+..+|..++.+.
T Consensus        54 ~~~~~~~~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v  120 (345)
T 2bll_A           54 ISIHSEWIEYHVKK-CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEV  120 (345)
T ss_dssp             TTTCSHHHHHHHHH-CSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             ccCcHHHHHhhccC-CCEEEEcccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHH
Confidence            443  234455654 8999987431  1               1123567888888888888766544

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=94.03  E-value=0.1  Score=49.41  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=27.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -..++|+|.|+ |.+|+++++.|+..| -+++++|.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~   45 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ   45 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc
Confidence            34678999976 899999999999999 468877754

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.02  E-value=0.075  Score=52.79  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=80.5

Q ss_pred             hhCCcEEEEcCChHHH-HHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGLGGVGS-HAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs-~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++..||.|||+|.+|. ..+..|... |+.-+.++|.|.                   .|++.++++.   .  +.  .+
T Consensus        25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~~~a~~~---g--~~--~~   78 (350)
T 3rc1_A           25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRW-------------------DRAKRFTERF---G--GE--PV   78 (350)
T ss_dssp             -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSH-------------------HHHHHHHHHH---C--SE--EE
T ss_pred             CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCH-------------------HHHHHHHHHc---C--CC--Cc
Confidence            3457899999999998 788999887 444334656542                   3444444433   1  21  11


Q ss_pred             eccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccC
Q 013180          160 VLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTN  228 (448)
Q Consensus       160 ~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~  228 (448)
                            .+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+..-...-+
T Consensus        79 ------~~~~~ll~~~~~D~V~i~tp~~-~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~  151 (350)
T 3rc1_A           79 ------EGYPALLERDDVDAVYVPLPAV-LHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLH  151 (350)
T ss_dssp             ------ESHHHHHTCTTCSEEEECCCGG-GHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGG
T ss_pred             ------CCHHHHhcCCCCCEEEECCCcH-HHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccC
Confidence                  34556664 3589999998874 455566677888998887332221000          11222333334457


Q ss_pred             ChhhHHHHHHHhhhcCccCCee
Q 013180          229 DPLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       229 dpl~~~~r~~l~~~~g~~g~i~  250 (448)
                      +|..+.+|+.+..  |..|.+.
T Consensus       152 ~p~~~~~k~~i~~--G~iG~i~  171 (350)
T 3rc1_A          152 HPQHRQVADMLDE--GVIGEIR  171 (350)
T ss_dssp             CTHHHHHHHHHHT--TTTCSEE
T ss_pred             CHHHHHHHHHHhc--CCCCCeE
Confidence            8889999888865  4455443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=94.00  E-value=0.13  Score=49.63  Aligned_cols=81  Identities=16%  Similarity=0.182  Sum_probs=52.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +..+|.|||+|.+|+.++..|+++|.  .+++++|.+.                   .|.+.+++.+     .++  .. 
T Consensus         2 ~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~-------------------~~~~~l~~~~-----gi~--~~-   54 (280)
T 3tri_A            2 NTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL-------------------DKLDFFKEKC-----GVH--TT-   54 (280)
T ss_dssp             CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS-------------------HHHHHHHHTT-----CCE--EE-
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH-------------------HHHHHHHHHc-----CCE--Ee-
Confidence            35789999999999999999999996  2688866542                   1233332221     122  11 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAAC  196 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c  196 (448)
                           .+..+.+.+ +|+||-|+.....+..+.++.
T Consensus        55 -----~~~~~~~~~-aDvVilav~p~~~~~vl~~l~   84 (280)
T 3tri_A           55 -----QDNRQGALN-ADVVVLAVKPHQIKMVCEELK   84 (280)
T ss_dssp             -----SCHHHHHSS-CSEEEECSCGGGHHHHHHHHH
T ss_pred             -----CChHHHHhc-CCeEEEEeCHHHHHHHHHHHH
Confidence                 123445554 999999997655555554444

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=93.99  E-value=0.48  Score=45.86  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=28.5

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++.++|+|.| .|++|+++++.|+..| -+++++|.+
T Consensus        18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~   54 (333)
T 2q1w_A           18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNF   54 (333)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECC
Confidence            34567899998 5999999999999999 568887764

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=93.98  E-value=0.19  Score=50.27  Aligned_cols=79  Identities=18%  Similarity=0.232  Sum_probs=55.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +...++|+|||+|+.|...+..|.. .++.+++++|.+                   ..|++.+++.+.+. +.+++...
T Consensus       126 ~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~-------------------~~~a~~la~~~~~~-~g~~~~~~  185 (350)
T 1x7d_A          126 RPNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTD-------------------PLATAKLIANLKEY-SGLTIRRA  185 (350)
T ss_dssp             CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHTTC-TTCEEEEC
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHHHhc-cCceEEEe
Confidence            3456899999999999999998864 478889986542                   24666666666542 34444332


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCH
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                            ++..+.+.+ +|+||.|+-+.
T Consensus       186 ------~~~~eav~~-aDiVi~aTps~  205 (350)
T 1x7d_A          186 ------SSVAEAVKG-VDIITTVTADK  205 (350)
T ss_dssp             ------SSHHHHHTT-CSEEEECCCCS
T ss_pred             ------CCHHHHHhc-CCEEEEeccCC
Confidence                  245566665 99999999874

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=93.96  E-value=0.065  Score=50.70  Aligned_cols=30  Identities=20%  Similarity=0.275  Sum_probs=26.3

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|+|.|+ |.+|+++++.|...|. +++.+|.
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEY-DIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTE-EEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEecc
Confidence            7999995 9999999999999984 6888766

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=93.93  E-value=0.42  Score=45.84  Aligned_cols=103  Identities=12%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccC-chHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVG-TPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG-~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .++|+|.|+ |++|+++++.|+..| -++++++.+.-              +-. ..|.+.+.+ +.  .+.+++  +..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~--------------~~~~~~~~~~l~~-~~--~~~v~~--v~~   63 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLT--------------PDSTPSSVQLREE-FR--SMGVTI--IEG   63 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCC--------------TTCCHHHHHHHHH-HH--HTTCEE--EEC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcc--------------cccChHHHHHHHH-hh--cCCcEE--EEe
Confidence            467999996 999999999999999 46777654310              000 113322221 21  133443  333


Q ss_pred             cC-CccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcC-CcEEEEc
Q 013180          162 LY-DASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG-LKVLCAT  207 (448)
Q Consensus       162 ~~-~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~-ip~I~~~  207 (448)
                      .+ +.+.....+.+ +|+||.|....  ..-..+.++|.+.+ ++.|-.+
T Consensus        64 D~~d~~~l~~a~~~-~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S  112 (321)
T 3c1o_A           64 EMEEHEKMVSVLKQ-VDIVISALPFPMISSQIHIINAIKAAGNIKRFLPS  112 (321)
T ss_dssp             CTTCHHHHHHHHTT-CSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEECS
T ss_pred             cCCCHHHHHHHHcC-CCEEEECCCccchhhHHHHHHHHHHhCCccEEecc
Confidence            33 34556677776 99999988643  34456778888887 6544333

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=93.92  E-value=0.35  Score=46.41  Aligned_cols=102  Identities=20%  Similarity=0.212  Sum_probs=62.9

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.|+ |++|++++..|...|. ++++++.+.               +   .|.+.+. .+..  +.+++  +...
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~---------------~---~~~~~~~-~l~~--~~v~~--v~~D   66 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGH-PTYVFTRPN---------------S---SKTTLLD-EFQS--LGAII--VKGE   66 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECTT---------------C---SCHHHHH-HHHH--TTCEE--EECC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCC-cEEEEECCC---------------C---chhhHHH-Hhhc--CCCEE--EEec
Confidence            358999996 9999999999999994 577755431               0   1122111 1211  23443  3333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCH--HHHHHHHHHHHHcC-CcEEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNI--DTKVALLAACVRRG-LKVLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~--~~r~~l~~~c~~~~-ip~I~~~g~G  210 (448)
                      + +.+.....+.+ +|+||.+....  ..-..+.++|.+.+ ++.|-.+..|
T Consensus        67 l~d~~~l~~a~~~-~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v~S~~g  117 (318)
T 2r6j_A           67 LDEHEKLVELMKK-VDVVISALAFPQILDQFKILEAIKVAGNIKRFLPSDFG  117 (318)
T ss_dssp             TTCHHHHHHHHTT-CSEEEECCCGGGSTTHHHHHHHHHHHCCCCEEECSCCS
T ss_pred             CCCHHHHHHHHcC-CCEEEECCchhhhHHHHHHHHHHHhcCCCCEEEeeccc
Confidence            3 34556677776 99999988643  33456778888887 6544433333

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=93.92  E-value=0.18  Score=46.76  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=30.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~   47 (247)
T 3i1j_A           11 LLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRT   47 (247)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            577889999986 8999999999999997 57776654

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=93.91  E-value=0.6  Score=46.10  Aligned_cols=115  Identities=18%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHH-HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC---ce---E
Q 013180           85 SYVVVIGL-GGVGSHAAAMLL-RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE---CH---I  156 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~La-rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~---v~---v  156 (448)
                      .+|+|.|+ |++|+++++.|+ ..|. +++++|...-...   ...     ..  ...+.+.+.+.++...   -.   +
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~---~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~   71 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH-SVVIVDSLVGTHG---KSD-----HV--ETRENVARKLQQSDGPKPPWADRYA   71 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEEEECCTTTTT---CCT-----TS--CCHHHHHHHHHHSCSSCCTTTTCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC-EEEEEecCCcccc---ccc-----cc--chHHHHHHHHHHhhccccccCCceE
Confidence            57999985 999999999999 9995 6887775421100   000     00  0022233333333211   12   3


Q ss_pred             EEEeccCC-ccchHHHhc--CCCCeEEEccCCH-----------------HHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          157 DAKVLLYD-ASSEEEILS--GHPDFVLDCIDNI-----------------DTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       157 ~~~~~~~~-~~~~~~ll~--~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      +.+...++ .+...+++.  +.+|+||.|....                 ..-..+.++|.+.++ .+|..+..+
T Consensus        72 ~~~~~Dl~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~  146 (397)
T 1gy8_A           72 ALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAA  146 (397)
T ss_dssp             EEEESCTTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             EEEECCCCCHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            44444443 334455554  3499999886421                 122356778888775 466544433

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=93.90  E-value=0.38  Score=46.32  Aligned_cols=104  Identities=13%  Similarity=0.040  Sum_probs=60.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +.+|+|.|+ |++|+++++.|+..|- -+++++|...-. .+...  +                  .++...-+++.+..
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~-~~~~~--~------------------~~~~~~~~~~~~~~   61 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYG-SNPAN--L------------------KDLEDDPRYTFVKG   61 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTT-CCGGG--G------------------TTTTTCTTEEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCccc-CchhH--H------------------hhhccCCceEEEEc
Confidence            467999985 9999999999999984 367777754211 01100  0                  01100113444433


Q ss_pred             cCC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHcCC--cEEEEcCC
Q 013180          162 LYD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRRGL--KVLCATGA  209 (448)
Q Consensus       162 ~~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~i--p~I~~~g~  209 (448)
                      .++ .+...+++.+ +|+||.|....                 ..-..+.++|.+.+.  .+|..++.
T Consensus        62 Dl~d~~~~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~  128 (336)
T 2hun_A           62 DVADYELVKELVRK-VDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTD  128 (336)
T ss_dssp             CTTCHHHHHHHHHT-CSEEEECCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEG
T ss_pred             CCCCHHHHHHHhhC-CCEEEECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccH
Confidence            333 3445566654 99999886531                 122356677877653  66665543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.89  E-value=0.052  Score=55.17  Aligned_cols=103  Identities=23%  Similarity=0.247  Sum_probs=66.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCc--cCchHHHHHHHHHhhhCCCceEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRAD--VGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~d--vG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      +|.+.+|+|+|+|..|..++++|...|+++|+++|.+-+=.  ..|      .|  +-..|...+.+    .++.     
T Consensus       189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~--~~R------~~~~L~~~k~~~A~~----~~~~-----  251 (388)
T 1vl6_A          189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN--END------PETCLNEYHLEIARI----TNPE-----  251 (388)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC--TTS------GGGCSSHHHHHHHHT----SCTT-----
T ss_pred             CCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCccc--CCC------cccccCHHHHHHHHh----hhcc-----
Confidence            68899999999999999999999999999999999762110  011      01  22333333332    2321     


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEcC
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                          .+..++.+.+.+ +|++|.++.. .=++..+-.+.   .-|+|....
T Consensus       252 ----~~~~~L~eav~~-ADVlIG~Sap~l~t~emVk~Ma---~~pIIfalS  294 (388)
T 1vl6_A          252 ----RLSGDLETALEG-ADFFIGVSRGNILKPEWIKKMS---RKPVIFALA  294 (388)
T ss_dssp             ----CCCSCHHHHHTT-CSEEEECSCSSCSCHHHHTTSC---SSCEEEECC
T ss_pred             ----CchhhHHHHHcc-CCEEEEeCCCCccCHHHHHhcC---CCCEEEEcC
Confidence                124567788876 9999999872 11233433332   467887654

>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A

Probab=93.89  E-value=0.12  Score=54.53  Aligned_cols=40  Identities=25%  Similarity=0.413  Sum_probs=35.7

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHH----cCC------ceEEEEeCCcc
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLVDFDQV  119 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~LiD~D~V  119 (448)
                      ++|++.||++.|+|..|..+|+.|..    .|+      ++|.++|..-+
T Consensus       278 k~l~d~riv~~GAGaAg~gia~ll~~~~~~~G~~~eeA~~~i~~~D~~Gl  327 (555)
T 1gq2_A          278 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGL  327 (555)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEE
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChHHHhCcEEEEECCCe
Confidence            47899999999999999999999998    796      79999998644

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=93.88  E-value=0.32  Score=45.26  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=29.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   39 (261)
T 1gee_A            4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYR   39 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcC
Confidence            467888999875 8999999999999996 4777664

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.88  E-value=0.21  Score=46.82  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|+++|.   .+++++|.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~   40 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPS   40 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCC
Confidence            3589999999999999999999995   678888765

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=93.87  E-value=0.24  Score=47.17  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=50.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+.                   .+.+.+.+.+.+... .++..+
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~-~~~~~~   83 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSK-------------------ETLQKVVSHCLELGA-ASAHYI   83 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHTC-SEEEEE
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHHHHHhCC-CceEEE
Confidence            366789999987 8999999999999996 577766541                   234444455554432 245544


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDC  182 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda  182 (448)
                      ...++. +....++.      +..|+||.+
T Consensus        84 ~~Dl~d~~~v~~~~~~~~~~~g~iD~li~n  113 (286)
T 1xu9_A           84 AGTMEDMTFAEQFVAQAGKLMGGLDMLILN  113 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHTSCSEEEEC
T ss_pred             eCCCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            444433 23333322      248888866

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=93.85  E-value=0.24  Score=47.11  Aligned_cols=78  Identities=13%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||+|+|||.+|..+++.+...+- +|. ++|.+.-.             +                 ..+.+       
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~-eLva~~d~~~~~-------------~-----------------~gv~v-------   45 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGH-EIVGVIENTPKA-------------T-----------------TPYQQ-------   45 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEECSSCC--------------------------------CCSCB-------
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCC-EEEEEEecCccc-------------c-----------------CCCce-------
Confidence            589999999999999999998875 554 35644210             0                 11111       


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      . .+.++++  ++|+|||++..-.....+ +  .++|+|+|.+
T Consensus        46 ~-~dl~~l~--~~DVvIDft~p~a~~~~~-~--l~~g~~vVig   82 (243)
T 3qy9_A           46 Y-QHIADVK--GADVAIDFSNPNLLFPLL-D--EDFHLPLVVA   82 (243)
T ss_dssp             C-SCTTTCT--TCSEEEECSCHHHHHHHH-T--SCCCCCEEEC
T ss_pred             e-CCHHHHh--CCCEEEEeCChHHHHHHH-H--HhcCCceEeC
Confidence            1 2233444  499999999755544444 3  7899999974

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=93.79  E-value=0.057  Score=51.83  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||+|..++..|++.| .+++++|.+                   ..|++.+++.+....   .+...  
T Consensus       117 l~~k~vlViGaGg~g~a~a~~L~~~G-~~V~v~~R~-------------------~~~~~~la~~~~~~~---~~~~~--  171 (271)
T 1nyt_A          117 RPGLRILLIGAGGASRGVLLPLLSLD-CAVTITNRT-------------------VSRAEELAKLFAHTG---SIQAL--  171 (271)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS-------------------HHHHHHHHHHTGGGS---SEEEC--
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcC-CEEEEEECC-------------------HHHHHHHHHHhhccC---CeeEe--
Confidence            57889999999999999999999999 789985443                   135555555554321   22221  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                        +.+...+   +.+|+||+|+...
T Consensus       172 --~~~~~~~---~~~DivVn~t~~~  191 (271)
T 1nyt_A          172 --SMDELEG---HEFDLIINATSSG  191 (271)
T ss_dssp             --CSGGGTT---CCCSEEEECCSCG
T ss_pred             --cHHHhcc---CCCCEEEECCCCC
Confidence              1111111   3599999998753

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.74  E-value=0.058  Score=54.96  Aligned_cols=104  Identities=18%  Similarity=0.180  Sum_probs=66.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++.+.||+|+|+|..|..+++.|...|+++|+++|.+-+=..+  |     ..++-..|...+.+    .++..      
T Consensus       185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~--R-----~~~L~~~k~~fa~~----~~~~~------  247 (398)
T 2a9f_A          185 SLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQ--E-----AAQLAPHHLDIAKV----TNREF------  247 (398)
T ss_dssp             CTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT--C-----CCSCCC---CHHHH----HSCTT------
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCC--c-----cccchHHHHHHhhc----cCccc------
Confidence            6889999999999999999999999999999999988421110  0     01223334444433    23221      


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                         +..++.+.+.+ .|++|.+.. +.=++..+-.++   .-|+|.+..
T Consensus       248 ---~~~~L~eav~~-ADV~IG~Sapgl~T~EmVk~Ma---~~pIIfals  289 (398)
T 2a9f_A          248 ---KSGTLEDALEG-ADIFIGVSAPGVLKAEWISKMA---ARPVIFAMA  289 (398)
T ss_dssp             ---CCCSCSHHHHT-TCSEEECCSTTCCCHHHHHTSC---SSCEEEECC
T ss_pred             ---chhhHHHHhcc-CCEEEecCCCCCCCHHHHHhhC---CCCEEEECC
Confidence               13345666776 899999876 222344444444   568888764

>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A*

Probab=93.74  E-value=0.14  Score=54.46  Aligned_cols=122  Identities=16%  Similarity=0.262  Sum_probs=74.6

Q ss_pred             HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHH----cCC------ceEEEE
Q 013180           63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLV  114 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~Li  114 (448)
                      +.++|..++..|..+-|                  ++|++.||++.|+|..|..+|+.|+.    .|+      ++|.++
T Consensus       281 il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~v  360 (605)
T 1o0s_A          281 LLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLM  360 (605)
T ss_dssp             HHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEE
T ss_pred             HHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhhhhCeEEEE
Confidence            34566556666665544                  37899999999999999999999998    796      799999


Q ss_pred             eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHH
Q 013180          115 DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVA  191 (448)
Q Consensus       115 D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~  191 (448)
                      |..-+=..+-        .++-..|...+++    .+            ...++.+.+.+ ++|+.|.++.  +.-++..
T Consensus       361 D~~Gli~~~r--------~~l~~~k~~~A~~----~~------------~~~~L~eav~~vkpdVlIG~S~~~g~ft~ev  416 (605)
T 1o0s_A          361 DIDGLVTKNR--------KEMNPRHVQFAKD----MP------------ETTSILEVIRAARPGALIGASTVRGAFNEEV  416 (605)
T ss_dssp             ETTEECBTTC--------SSCCGGGTTTCBS----SC------------CCCCHHHHHHHHCCSEEEECSSCTTCSCHHH
T ss_pred             ECCCceeCCC--------CCchHHHHHHHhh----cC------------CCCCHHHHHhhcCCCEEEEecCCCCCCCHHH
Confidence            9874422211        1122222111100    00            01124444442 3777777663  4445566


Q ss_pred             HHHHHHHcCCcEEEEcC
Q 013180          192 LLAACVRRGLKVLCATG  208 (448)
Q Consensus       192 l~~~c~~~~ip~I~~~g  208 (448)
                      +-.++.....|+|.++.
T Consensus       417 v~~Ma~~~~~PIIFaLS  433 (605)
T 1o0s_A          417 IRAMAEINERPIIFALS  433 (605)
T ss_dssp             HHHHHHHCSSCEEEECC
T ss_pred             HHHHHhcCCCCEEEECC
Confidence            66677667777777764

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=93.72  E-value=0.33  Score=49.77  Aligned_cols=142  Identities=12%  Similarity=0.029  Sum_probs=83.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~  158 (448)
                      ..+..||.|||+|.+|...+..|... |+.-..++|                   ....|++.+++.+.+.. |.+++  
T Consensus        17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d-------------------~~~~~~~~~a~~~~~~g~~~~~~--   75 (444)
T 2ixa_A           17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFAD-------------------PDPYMVGRAQEILKKNGKKPAKV--   75 (444)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEC-------------------SCHHHHHHHHHHHHHTTCCCCEE--
T ss_pred             CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEe-------------------CCHHHHHHHHHHHHhcCCCCCce--
Confidence            34556899999999999988888764 332223433                   33456666666665433 32322  


Q ss_pred             EeccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc------------CCCceEEccccc
Q 013180          159 KVLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA------------DPTRIRVADLRE  225 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~------------dpt~i~i~di~~  225 (448)
                      +..  ..++.++++.. ++|+|+.|+.+. ....+...|.+.|++++.---.+...            .-..+.+.  ..
T Consensus        76 ~~~--~~~~~~~ll~~~~vD~V~i~tp~~-~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~--~~  150 (444)
T 2ixa_A           76 FGN--GNDDYKNMLKDKNIDAVFVSSPWE-WHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMAL--EN  150 (444)
T ss_dssp             ECS--STTTHHHHTTCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEEC--CG
T ss_pred             ecc--CCCCHHHHhcCCCCCEEEEcCCcH-HHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE--ec
Confidence            211  23356777763 599999999864 55666777888999888732111100            01112222  22


Q ss_pred             ccCChhhHHHHHHHhhhcCccCCee
Q 013180          226 STNDPLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       226 ~~~dpl~~~~r~~l~~~~g~~g~i~  250 (448)
                      .-++|....+++.++.  |..|.+.
T Consensus       151 ~r~~p~~~~~~~~i~~--G~iG~i~  173 (444)
T 2ixa_A          151 VCYRRDVMAILNMVRK--GMFGELV  173 (444)
T ss_dssp             GGGCHHHHHHHHHHHT--TTTCSEE
T ss_pred             cccCHHHHHHHHHHHc--CCCCCeE
Confidence            3456777778777764  5555443

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=93.71  E-value=0.49  Score=45.41  Aligned_cols=32  Identities=31%  Similarity=0.517  Sum_probs=26.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |++|+++++.|+..|. +++++|..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGL-SVVVVDNL   34 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            47999975 9999999999999994 67777653

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=93.70  E-value=0.1  Score=51.89  Aligned_cols=78  Identities=19%  Similarity=0.171  Sum_probs=51.5

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC---Cce
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP---ECH  155 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP---~v~  155 (448)
                      +.....+|.|+|+|.+|+.++..|+..|. .++.|+|-+                   ..|++..+.-|....+   ..+
T Consensus        15 ~~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~a~DL~~~~~~~~~~~   75 (331)
T 4aj2_A           15 EQVPQNKITVVGVGAVGMACAISILMKDLADELALVDVI-------------------EDKLKGEMMDLQHGSLFLKTPK   75 (331)
T ss_dssp             --CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC-------------------HHHHHHHHHHHHHTGGGCSCCE
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC-------------------hHHHHHHHHhhhhhhhccCCCe
Confidence            56678899999999999999999999986 478888754                   2466666666665432   222


Q ss_pred             EEEEeccCCccchHHHhcCCCCeEEEccC
Q 013180          156 IDAKVLLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       156 v~~~~~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      +... .     +.++ +.+ .|+||.|..
T Consensus        76 i~~~-~-----d~~~-~~~-aDiVvi~aG   96 (331)
T 4aj2_A           76 IVSS-K-----DYSV-TAN-SKLVIITAG   96 (331)
T ss_dssp             EEEC-S-----SGGG-GTT-EEEEEECCS
T ss_pred             EEEc-C-----CHHH-hCC-CCEEEEccC
Confidence            3211 1     1222 444 899987754

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=93.70  E-value=0.044  Score=52.62  Aligned_cols=31  Identities=35%  Similarity=0.522  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~   32 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVF   32 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            69999999999999999999996 57776653

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.69  E-value=0.22  Score=47.71  Aligned_cols=32  Identities=34%  Similarity=0.478  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++..|+..|. ++.++|.+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   37 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRN   37 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ceEEEECchHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            489999999999999999999996 57777654

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=93.68  E-value=0.065  Score=52.50  Aligned_cols=113  Identities=26%  Similarity=0.356  Sum_probs=67.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ++|.+||+|-.|+.+|.+|+++|. .++++|.+.=....+        .+.|-..+...++..+    .+++.... ..+
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l--------~~~Ga~~a~s~~e~~~----~~dvv~~~-l~~   69 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGL--------VAAGASAARSARDAVQ----GADVVISM-LPA   69 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHH--------HHTTCEECSSHHHHHT----TCSEEEEC-CSC
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHH--------HHcCCEEcCCHHHHHh----cCCceeec-CCc
Confidence            479999999999999999999996 477766432111111        1122222222222222    23333221 123


Q ss_pred             ccchHHHhcC---------CCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          165 ASSEEEILSG---------HPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       165 ~~~~~~ll~~---------~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .+...+.+.+         +-++|||++. +++....+.+.+.++|+-++++.-.|+
T Consensus        70 ~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg  126 (300)
T 3obb_A           70 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  126 (300)
T ss_dssp             HHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESC
T ss_pred             hHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCC
Confidence            3333333321         2368888876 578888999999999999999765554

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=93.67  E-value=0.33  Score=45.18  Aligned_cols=82  Identities=13%  Similarity=0.304  Sum_probs=52.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      |++++|+|.|+ ||+|.++++.|++.|..++.++|.+.-                 ..+    .+.+.+..+..++..+.
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~-----------------~~~----~~~l~~~~~~~~~~~~~   61 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVEN-----------------PTA----LAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCC-----------------HHH----HHHHHHHCTTSEEEEEE
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCch-----------------HHH----HHHHHHhCCCceEEEEE
Confidence            56788999975 899999999999999877888765420                 011    23344444555666665


Q ss_pred             ccCCc--cchHHHhc------CCCCeEEEccC
Q 013180          161 LLYDA--SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~--~~~~~ll~------~~~D~VIda~D  184 (448)
                      ..++.  +...+++.      +++|+||.+..
T Consensus        62 ~D~~~~~~~~~~~~~~~~~~~g~id~lv~~Ag   93 (254)
T 1sby_A           62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             EecCCChHHHHHHHHHHHHhcCCCCEEEECCc
Confidence            55543  33333332      24898887653

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=93.61  E-value=0.27  Score=47.00  Aligned_cols=37  Identities=27%  Similarity=0.445  Sum_probs=29.9

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +..|.+++|+|.|+ ||+|.++++.|++.|. ++.++|.
T Consensus        20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r   57 (281)
T 3v2h_A           20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGF   57 (281)
T ss_dssp             --CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            34677889999976 7999999999999997 5777664

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=93.55  E-value=0.27  Score=48.06  Aligned_cols=124  Identities=18%  Similarity=0.167  Sum_probs=72.3

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||.|||||| +|...+..|...|+.-+.++|.+.-      |..                  +.+..|.+++  +.   
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~------~~~------------------~~~~~~~~~~--~~---   54 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATN------VGL------------------VDSFFPEAEF--FT---   54 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCC------CGG------------------GGGTCTTCEE--ES---
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHH------HHH------------------HHhhCCCCce--eC---
Confidence            5899999965 9999999999998877777776531      111                  1112233322  11   


Q ss_pred             CccchHHHh---------cCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccc
Q 013180          164 DASSEEEIL---------SGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLR  224 (448)
Q Consensus       164 ~~~~~~~ll---------~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~  224 (448)
                         +.++++         ..++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-..
T Consensus        55 ---~~~~ll~~~~~l~~~~~~vD~V~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~  130 (312)
T 3o9z_A           55 ---EPEAFEAYLEDLRDRGEGVDYLSIASPN-HLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVL  130 (312)
T ss_dssp             ---CHHHHHHHHHHHHHTTCCCSEEEECSCG-GGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECC
T ss_pred             ---CHHHHHHHhhhhcccCCCCcEEEECCCc-hhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence               122333         2357888888776 4566666777777887776321111000          0111122223


Q ss_pred             cccCChhhHHHHHHHhh
Q 013180          225 ESTNDPLSRAVMHRLRK  241 (448)
Q Consensus       225 ~~~~dpl~~~~r~~l~~  241 (448)
                      ..-++|..+.+|+.+..
T Consensus       131 ~~R~~p~~~~~k~~i~~  147 (312)
T 3o9z_A          131 QLRVHPSLLALKERLGQ  147 (312)
T ss_dssp             GGGGCHHHHHHHHHHHT
T ss_pred             ehhcCHHHHHHHHHHHc
Confidence            34578888889888876

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=93.55  E-value=0.063  Score=55.57  Aligned_cols=35  Identities=26%  Similarity=0.447  Sum_probs=33.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCC--ceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD  115 (448)
                      .+++++|+|+|+||.|..++..|...|+  ++|+++|
T Consensus       183 ~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd  219 (439)
T 2dvm_A          183 KISEITLALFGAGAAGFATLRILTEAGVKPENVRVVE  219 (439)
T ss_dssp             CTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             CccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEE
Confidence            4678999999999999999999999999  8999988

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=93.54  E-value=0.38  Score=45.09  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=29.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~   42 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN   42 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66788999975 7999999999999996 57776643

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=93.53  E-value=0.061  Score=51.99  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      .+++|+|+|+||.|..++..|...|+.+|+|++
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~n  150 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYA  150 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            467999999999999999999999999999953

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=93.51  E-value=0.59  Score=47.96  Aligned_cols=37  Identities=32%  Similarity=0.391  Sum_probs=34.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|.|.||+.+++.|...|..-+.+.|.+
T Consensus       215 ~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~  251 (419)
T 3aoe_E          215 DLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSM  251 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence            4789999999999999999999999998888898876

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.50  E-value=0.27  Score=48.51  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=48.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC---CCceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF---PECHIDAKV  160 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in---P~v~v~~~~  160 (448)
                      .||.|+|+|++|+.++..|+..|. .+|.|+|-|                   ..|++..+.-+.+..   +.+++..  
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~v~~--   64 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV-------------------KDRTKGDALDLEDAQAFTAPKKIYS--   64 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS-------------------HHHHHHHHHHHHGGGGGSCCCEEEE--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHHHHHHHHHHHHHHhcCCeEEEE--
Confidence            689999999999999999998884 568887743                   234444444444433   3445543  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      .     . .+-+.+ .|+||.+..-
T Consensus        65 ~-----~-~~a~~~-aDvVii~ag~   82 (318)
T 1ez4_A           65 G-----E-YSDCKD-ADLVVITAGA   82 (318)
T ss_dssp             C-----C-GGGGTT-CSEEEECCCC
T ss_pred             C-----C-HHHhCC-CCEEEECCCC
Confidence            1     1 122444 9999988754

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=93.49  E-value=0.14  Score=48.19  Aligned_cols=96  Identities=11%  Similarity=0.188  Sum_probs=58.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHc--CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRS--GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~Lars--GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +|+|.|+ |++|+++++.|...  |. +++++|.+.   +++                +.    +..  +.++  .+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~---~~~----------------~~----~~~--~~~~--~~~~D   52 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNP---AKA----------------QA----LAA--QGIT--VRQAD   52 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCT---TTC----------------HH----HHH--TTCE--EEECC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcCh---Hhh----------------hh----hhc--CCCe--EEEcC
Confidence            5899997 99999999999988  74 677776532   110                00    111  1233  33333


Q ss_pred             C-CccchHHHhcCCCCeEEEccC-----CHHHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCID-----NIDTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~D-----n~~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      + +.+...+.+.+ +|+||.+..     +...-..+.++|.+.++ .+|..+..+
T Consensus        53 ~~d~~~~~~~~~~-~d~vi~~a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           53 YGDEAALTSALQG-VEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             TTCHHHHHHHTTT-CSEEEECC--------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCCHHHHHHHHhC-CCEEEEeCCCCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            3 33455666765 999998764     33445567788888776 466655443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=93.49  E-value=0.11  Score=50.73  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=73.4

Q ss_pred             cEEEEcCChHHHHH-HHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGLGGVGSHA-AAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~GGvGs~v-a~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      +|.|||+|.+|... +..|...|+.-+.++|.+.                   .|++.+++.+    +..      .  .
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~-------------------~~~~~~~~~~----g~~------~--~   50 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSA-------------------ERGAAYATEN----GIG------K--S   50 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCH-------------------HHHHHHHHHT----TCS------C--C
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCH-------------------HHHHHHHHHc----CCC------c--c
Confidence            79999999999997 8888886665555666542                   2333333322    110      0  0


Q ss_pred             ccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChhhH
Q 013180          165 ASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPLSR  233 (448)
Q Consensus       165 ~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl~~  233 (448)
                      ..+.++++.. ++|+|+.|+.+.. ...+...|.+.|++++.---.+....          -..+.+..-...-++|...
T Consensus        51 ~~~~~~~l~~~~~D~V~i~tp~~~-h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~  129 (332)
T 2glx_A           51 VTSVEELVGDPDVDAVYVSTTNEL-HREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHR  129 (332)
T ss_dssp             BSCHHHHHTCTTCCEEEECSCGGG-HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHH
T ss_pred             cCCHHHHhcCCCCCEEEEeCChhH-hHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHH
Confidence            1234556542 4899998887644 34444556778888776321211000          0112222233345778888


Q ss_pred             HHHHHHhhhcCccCCee
Q 013180          234 AVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       234 ~~r~~l~~~~g~~g~i~  250 (448)
                      .+++.++.  |..|.+.
T Consensus       130 ~~~~~i~~--g~iG~i~  144 (332)
T 2glx_A          130 AMRDAIAE--GRIGRPI  144 (332)
T ss_dssp             HHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHc--CCCCCeE
Confidence            88887764  4445443

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=93.49  E-value=0.88  Score=45.19  Aligned_cols=130  Identities=17%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..||.|||||.+|.. .+..|... |+.-..++|.+.                   .|+.       +..+.+++  +  
T Consensus         7 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~~~-------~~~~~~~~--~--   56 (364)
T 3e82_A            7 TINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDE-------------------EKVK-------RDLPDVTV--I--   56 (364)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCH-------------------HHHH-------HHCTTSEE--E--
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCH-------------------HHHH-------hhCCCCcE--E--
Confidence            358999999999996 67777665 443334555542                   1211       23344332  1  


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt~i~i~di~~~~~dp  230 (448)
                          .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+...          .-..+.+.-....-++|
T Consensus        57 ----~~~~~ll~~~~~D~V~i~tp~-~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p  131 (364)
T 3e82_A           57 ----ASPEAAVQHPDVDLVVIASPN-ATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDS  131 (364)
T ss_dssp             ----SCHHHHHTCTTCSEEEECSCG-GGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCH
T ss_pred             ----CCHHHHhcCCCCCEEEEeCCh-HHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCH
Confidence                24566665 358999999877 445566667888899988733221100          00112222233344788


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       132 ~~~~~~~~i~~--g~iG~i~  149 (364)
T 3e82_A          132 DYLGIRQVIEQ--GTLGAVK  149 (364)
T ss_dssp             HHHHHHHHHHH--TTTCSEE
T ss_pred             HHHHHHHHHHc--CCCcceE
Confidence            88888888865  5555443

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=93.46  E-value=0.15  Score=49.92  Aligned_cols=74  Identities=12%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +...++|.|||+|..|..++.+|... |+.+++++|.+                   ..|++.+++.+..     ++.. 
T Consensus       132 ~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~-------------------~~~~~~l~~~~~~-----~~~~-  186 (312)
T 2i99_A          132 PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRT-------------------KENAEKFADTVQG-----EVRV-  186 (312)
T ss_dssp             CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSS-------------------HHHHHHHHHHSSS-----CCEE-
T ss_pred             CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCC-------------------HHHHHHHHHHhhC-----CeEE-
Confidence            44578999999999999999999988 88889987643                   1244444443321     1211 


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                           .++..+.+.+ +|+||.|+-+
T Consensus       187 -----~~~~~e~v~~-aDiVi~atp~  206 (312)
T 2i99_A          187 -----CSSVQEAVAG-ADVIITVTLA  206 (312)
T ss_dssp             -----CSSHHHHHTT-CSEEEECCCC
T ss_pred             -----eCCHHHHHhc-CCEEEEEeCC
Confidence                 1244566665 9999999864

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=93.46  E-value=0.073  Score=51.81  Aligned_cols=35  Identities=31%  Similarity=0.476  Sum_probs=30.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      +..+|.|||+|.+|+.++..|+..|. ++++++|.+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~   41 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   41 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34689999999999999999999995 479998876

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=93.44  E-value=0.5  Score=49.77  Aligned_cols=86  Identities=20%  Similarity=0.190  Sum_probs=63.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc-C
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-Y  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~-~  163 (448)
                      .+|+|+|+|-+|..+|+.|...|.. +++||.|.-....+.                               .++... .
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~-v~vid~d~~~~~~~~-------------------------------~~i~gD~t  396 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVP-FILIDRQESPVCNDH-------------------------------VVVYGDAT  396 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCC-EEEEESSCCSSCCSS-------------------------------CEEESCSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCC-EEEEECChHHHhhcC-------------------------------CEEEeCCC
Confidence            8999999999999999999999965 999998854332221                               111122 2


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLK  202 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip  202 (448)
                      +++.+.+.--.++|.+|.++++-+....+...+++.+.+
T Consensus       397 ~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~ak~l~~~  435 (565)
T 4gx0_A          397 VGQTLRQAGIDRASGIIVTTNDDSTNIFLTLACRHLHSH  435 (565)
T ss_dssp             SSTHHHHHTTTSCSEEEECCSCHHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHhcCccccCEEEEECCCchHHHHHHHHHHHHCCC
Confidence            333344443346999999999988888888999998865

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=93.39  E-value=0.4  Score=44.96  Aligned_cols=36  Identities=31%  Similarity=0.538  Sum_probs=30.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   45 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLD   45 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            366788999975 7999999999999997 68887754

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.39  E-value=0.51  Score=45.35  Aligned_cols=36  Identities=25%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +-.+++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~   47 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVAR   47 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence            345788999986 9999999999999995 68887754

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.37  E-value=0.078  Score=52.65  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++..||.|+|+|.+|+.++..|+..|.+++.|+|-+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~   40 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIA   40 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            457899999999999999999999998789998865

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=93.36  E-value=0.23  Score=42.88  Aligned_cols=39  Identities=18%  Similarity=0.229  Sum_probs=28.5

Q ss_pred             HHHHhhCCcEEEEcC----ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           78 SQQKVSGSYVVVIGL----GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~----GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |..-++..+|.|||+    |..|..++.+|...|. ++.-+|+.
T Consensus         8 ~~~l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~-~V~~vnp~   50 (138)
T 1y81_A            8 GSNSKEFRKIALVGASKNPAKYGNIILKDLLSKGF-EVLPVNPN   50 (138)
T ss_dssp             ------CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECTT
T ss_pred             cccccCCCeEEEEeecCCCCCHHHHHHHHHHHCCC-EEEEeCCC
Confidence            445567889999999    9999999999999998 45555554

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=93.36  E-value=0.056  Score=51.94  Aligned_cols=75  Identities=20%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+||+|..++..|++.| .+++++|.+.                   .|++.+++.+....   .+.... 
T Consensus       117 ~~~~~vlvlGaGg~g~a~a~~L~~~G-~~v~v~~R~~-------------------~~a~~l~~~~~~~~---~~~~~~-  172 (272)
T 1p77_A          117 RPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTF-------------------SKTKELAERFQPYG---NIQAVS-  172 (272)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSH-------------------HHHHHHHHHHGGGS---CEEEEE-
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEECCH-------------------HHHHHHHHHccccC---CeEEee-
Confidence            57889999999999999999999999 7899965431                   36666666665421   232221 


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCH
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                       +     +++..+.+|+||.|+...
T Consensus       173 -~-----~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          173 -M-----DSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             -G-----GGCCCSCCSEEEECCCC-
T ss_pred             -H-----HHhccCCCCEEEECCCCC
Confidence             1     111112599999998753

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=93.35  E-value=0.38  Score=46.58  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=61.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEec
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~  161 (448)
                      .++|+|.|+ |++|+++++.|+..|. +++++|...-..    |..     .-...+.+    .+.+. .+.  ++.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----r~~-----~~~~~~~~----~l~~~~~~~--~~~~~~   65 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDNFHNAF----RGG-----GSLPESLR----RVQELTGRS--VEFEEM   65 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEECSSSSC----BCS-----SSSBHHHH----HHHHHHTCC--CEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecCCccc----ccc-----cccHHHHH----HHHhccCCc--eEEEEC
Confidence            468999985 9999999999999995 577776542110    100     00011111    22221 223  333333


Q ss_pred             cCC-ccchHHHhcC-CCCeEEEccCCH-----------------HHHHHHHHHHHHcCC-cEEEEcCCC
Q 013180          162 LYD-ASSEEEILSG-HPDFVLDCIDNI-----------------DTKVALLAACVRRGL-KVLCATGAG  210 (448)
Q Consensus       162 ~~~-~~~~~~ll~~-~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~i-p~I~~~g~G  210 (448)
                      .++ .+...+++.. ++|+||.+....                 ..-..+.++|.+.++ .+|..++.+
T Consensus        66 D~~~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~  134 (348)
T 1ek6_A           66 DILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSAT  134 (348)
T ss_dssp             CTTCHHHHHHHHHHCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred             CCCCHHHHHHHHHhcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHH
Confidence            333 3445555551 389999886521                 122356678888775 466554443

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=93.34  E-value=0.23  Score=46.94  Aligned_cols=82  Identities=17%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++++++|+|.|+ ||+|.++|+.|++.|.. +.+++.+.                  ..+.+.+++.+.+....  +..+
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~-V~~~~r~~------------------~~~~~~~~~~~~~~~~~--~~~~   84 (271)
T 4iin_A           26 QFTGKNVLITGASKGIGAEIAKTLASMGLK-VWINYRSN------------------AEVADALKNELEEKGYK--AAVI   84 (271)
T ss_dssp             CCSCCEEEETTCSSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHhcCCc--eEEE
Confidence            467889999976 79999999999999974 66655431                  23445566666665543  4444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +...+++.      ++.|++|.+.
T Consensus        85 ~~D~~~~~~v~~~~~~~~~~~g~id~li~nA  115 (271)
T 4iin_A           85 KFDAASESDFIEAIQTIVQSDGGLSYLVNNA  115 (271)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSSCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            333332 22333322      2477777654

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=93.34  E-value=0.15  Score=48.42  Aligned_cols=32  Identities=31%  Similarity=0.443  Sum_probs=27.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|.|+ |++|+++++.|+..|..+++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~   33 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccC
Confidence            5899998 9999999999999996678887754

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=93.33  E-value=0.2  Score=46.33  Aligned_cols=35  Identities=20%  Similarity=0.554  Sum_probs=29.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus         8 ~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r   43 (255)
T 1fmc_A            8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDI   43 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEES
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcC
Confidence            367788999976 8999999999999996 5777664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=93.33  E-value=0.44  Score=45.25  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC-ceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE-CHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~-v~v~~  158 (448)
                      .|++++|+|.|+ ||+|.++++.|+..|. ++.++|.+                   ..+.+.+.+.+.+..+. .++..
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~   67 (281)
T 3svt_A            8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRN-------------------PDKLAGAVQELEALGANGGAIRY   67 (281)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTCCSSCEEEE
T ss_pred             CcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHHhCCCCceEEE
Confidence            577889999975 7999999999999997 47776654                   23445555666655432 24555


Q ss_pred             EeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          159 KVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      +...++. +....++.      +..|++|.+.
T Consensus        68 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   99 (281)
T 3svt_A           68 EPTDITNEDETARAVDAVTAWHGRLHGVVHCA   99 (281)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            4444432 22222221      2467766544

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=93.32  E-value=0.085  Score=51.47  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=31.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .+..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-
T Consensus        19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~   55 (310)
T 3doj_A           19 SHMMEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLS   55 (310)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGG
T ss_pred             ccCCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHH
Confidence            344689999999999999999999996 7889887653

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=93.31  E-value=0.39  Score=44.60  Aligned_cols=35  Identities=23%  Similarity=0.486  Sum_probs=29.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~   46 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLD   46 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66788999976 8999999999999996 57776643

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=93.30  E-value=0.35  Score=44.48  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCc------eEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVG------RLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg------~i~LiD~D  117 (448)
                      +++|+|.|+ ||+|.++++.|++.|..      ++.++|.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~   42 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRT   42 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCC
Confidence            457888874 89999999999999985      67776643

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=93.30  E-value=0.29  Score=46.25  Aligned_cols=27  Identities=19%  Similarity=0.212  Sum_probs=24.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGV  108 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGV  108 (448)
                      ++.++|+|.|+ |.+|+++++.|...|.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~   31 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG   31 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC
Confidence            45789999985 9999999999999986

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.27  E-value=0.076  Score=52.59  Aligned_cols=36  Identities=22%  Similarity=0.499  Sum_probs=32.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++..+|.|+|+|.+|+.++..|+..|.+++.|+|-+
T Consensus         3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~   38 (321)
T 3p7m_A            3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIA   38 (321)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            346799999999999999999999998889998876

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=93.22  E-value=0.34  Score=40.96  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=59.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..+|+|+|+|+.|..++..|.+. |..-+.++|.|.-.   ..+. +                      ..+.|-  .  
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~---~g~~-i----------------------~g~pV~--g--   53 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKK---HKTT-M----------------------QGITIY--R--   53 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGG---TTCE-E----------------------TTEEEE--C--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCccc---CCCE-e----------------------cCeEEE--C--
Confidence            56899999999999999999876 66666777866210   1110 0                      012221  1  


Q ss_pred             CCccchHHHhc-CCCCeEEEccCC--HHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YDASSEEEILS-GHPDFVLDCIDN--IDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~-~~~D~VIda~Dn--~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        .+.+.+++. .+.|.|+-|+.+  ...+..+.+.|...++.+...
T Consensus        54 --~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~v   98 (141)
T 3nkl_A           54 --PKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLTI   98 (141)
T ss_dssp             --GGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEEC
T ss_pred             --HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEEC
Confidence              223444432 247888888864  356678889999999988763

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=93.22  E-value=0.25  Score=44.29  Aligned_cols=35  Identities=17%  Similarity=0.262  Sum_probs=29.2

Q ss_pred             hCCcEEEEc-CChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           83 SGSYVVVIG-LGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG-~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ..++|+|.| .|++|+++++.|+..|. .++++++.+
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~   40 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARK   40 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSS
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            357899998 69999999999999996 478887654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=93.17  E-value=0.32  Score=49.09  Aligned_cols=35  Identities=31%  Similarity=0.578  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  247 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPS  247 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999999999999888887644

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=93.17  E-value=0.15  Score=49.81  Aligned_cols=130  Identities=18%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||.|||+|.+|...+..|... |+.-+.++|.+                   ..+++.++++.     .+.   +    
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~~~~~-----~~~---~----   52 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAF-------------------PAAAEAIAGAY-----GCE---V----   52 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHHHT-----TCE---E----
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCC-------------------HHHHHHHHHHh-----CCC---c----
Confidence            5899999999999999999986 44333355543                   23344333332     121   1    


Q ss_pred             CccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChhh
Q 013180          164 DASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPLS  232 (448)
Q Consensus       164 ~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl~  232 (448)
                        .+.++++.. ++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+.--...-++|..
T Consensus        53 --~~~~~~l~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~  129 (331)
T 4hkt_A           53 --RTIDAIEAAADIDAVVICTPTD-THADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHF  129 (331)
T ss_dssp             --CCHHHHHHCTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHH
T ss_pred             --CCHHHHhcCCCCCEEEEeCCch-hHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHH
Confidence              244566652 489999999764 345555667788888887332221000          111222223334578888


Q ss_pred             HHHHHHHhhhcCccCCee
Q 013180          233 RAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       233 ~~~r~~l~~~~g~~g~i~  250 (448)
                      +.+|+.++.  |..|.+.
T Consensus       130 ~~~~~~i~~--g~iG~i~  145 (331)
T 4hkt_A          130 MAVRKAIDD--GRIGEVE  145 (331)
T ss_dssp             HHHHHHHHT--TTTCSEE
T ss_pred             HHHHHHHHc--CCCCceE
Confidence            888888865  5556554

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=93.16  E-value=0.35  Score=45.23  Aligned_cols=37  Identities=24%  Similarity=0.465  Sum_probs=31.0

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   45 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRN   45 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3578899999976 7999999999999997 57777653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=93.13  E-value=0.55  Score=48.85  Aligned_cols=37  Identities=32%  Similarity=0.293  Sum_probs=33.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+.++|+|-|.|-||+++|+.|...|..-+.+.|.+
T Consensus       249 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~  285 (470)
T 2bma_A          249 PVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSN  285 (470)
T ss_dssp             CGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETT
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            4788999999999999999999999999888788854

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.13  E-value=0.071  Score=52.71  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=32.5

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++..+|.|+|+|.+|+.+|..|+..|.++++|+|-+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            346799999999999999999999998889998876

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=93.12  E-value=0.085  Score=52.07  Aligned_cols=33  Identities=24%  Similarity=0.291  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.||+|||+|-.|..+|..|++.|+. ++|+|.+
T Consensus         1 sm~V~IVGaGpaGl~~A~~L~~~G~~-v~v~Er~   33 (412)
T 4hb9_A            1 SMHVGIIGAGIGGTCLAHGLRKHGIK-VTIYERN   33 (412)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCC-EEEEecC
Confidence            46899999999999999999999984 9999865

>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*

Probab=93.10  E-value=0.27  Score=52.01  Aligned_cols=57  Identities=14%  Similarity=0.271  Sum_probs=45.0

Q ss_pred             HHHHhhhhHhhcCHHHH------------------HHhhCCcEEEEcCChHHHHHHHHHHH----cCC------ceEEEE
Q 013180           63 VAEQLTRNIQFFGVESQ------------------QKVSGSYVVVIGLGGVGSHAAAMLLR----SGV------GRLLLV  114 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q------------------~kL~~~~VlVVG~GGvGs~va~~Lar----sGV------g~i~Li  114 (448)
                      +.++|..++..|..+-|                  ++|++.||++.|+|..|..+|+.|..    .|+      ++|.++
T Consensus       245 il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~Gl~~eeA~~~i~~~  324 (564)
T 1pj3_A          245 FLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMF  324 (564)
T ss_dssp             HHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEE
T ss_pred             HHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHcCCChHHhhCcEEEE
Confidence            34556556666665544                  37899999999999999999999996    895      799999


Q ss_pred             eCCcc
Q 013180          115 DFDQV  119 (448)
Q Consensus       115 D~D~V  119 (448)
                      |..-+
T Consensus       325 D~~Gl  329 (564)
T 1pj3_A          325 DKYGL  329 (564)
T ss_dssp             ETTEE
T ss_pred             eCCCe
Confidence            98644

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=93.09  E-value=0.55  Score=45.85  Aligned_cols=134  Identities=16%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +..||.|||+|.+|...+..|...+ +.-+.++|.+.-....+...       .|.++                  .   
T Consensus         4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~-------~~~~~------------------~---   55 (329)
T 3evn_A            4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANK-------YHLPK------------------A---   55 (329)
T ss_dssp             -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---C-------CCCSC------------------E---
T ss_pred             CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHH-------cCCCc------------------c---
Confidence            3468999999999999999998775 33334556553222111111       11110                  0   


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                         -.+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+..-...-++|
T Consensus        56 ---~~~~~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p  131 (329)
T 3evn_A           56 ---YDKLEDMLADESIDVIYVATIN-QDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIP  131 (329)
T ss_dssp             ---ESCHHHHHTCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSH
T ss_pred             ---cCCHHHHhcCCCCCEEEECCCc-HHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCH
Confidence               123445554 247777777766 3344555566677777776332211000          0111222223345789


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       132 ~~~~~~~~i~~--g~iG~i~  149 (329)
T 3evn_A          132 MTQVIKKLLAS--GEIGEVI  149 (329)
T ss_dssp             HHHHHHHHHHT--TTTCSEE
T ss_pred             HHHHHHHHHhC--CCCCCeE
Confidence            99999988864  4455443

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=93.07  E-value=0.34  Score=46.20  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=32.8

Q ss_pred             HHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           76 VESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        76 ~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ......|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.
T Consensus        25 ~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   65 (275)
T 4imr_A           25 LETIFGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGV   65 (275)
T ss_dssp             HHHHHCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccccCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            34455688899999976 7999999999999997 5777665

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=93.06  E-value=0.61  Score=44.14  Aligned_cols=94  Identities=16%  Similarity=0.184  Sum_probs=55.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+.-..+.+.+.      .-...+.+.+.+.+...++.  +..+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~~   78 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYD------PASPDDLSETVRLVEAANRR--IVAA   78 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC------CCCHHHHHHHHHHHHHTTCC--EEEE
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEecccccccccccc------ccCHHHHHHHHHHHHhcCCe--EEEE
Confidence            578889999976 7999999999999997 588887653322222221      11233455555566655543  4444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        79 ~~D~~~~~~v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           79 VVDTRDFDRLRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            333332 22333321      2477777654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=93.05  E-value=1.2  Score=42.27  Aligned_cols=98  Identities=22%  Similarity=0.182  Sum_probs=60.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .++|+|.|+ |++|+++++.|+..|--++++++.+.-                 +.++    +.+..  +.+++  +...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~-----------------~~~~----~~l~~--~~~~~--~~~D   59 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPR-----------------KKAA----KELRL--QGAEV--VQGD   59 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTT-----------------SHHH----HHHHH--TTCEE--EECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCC-----------------CHHH----HHHHH--CCCEE--EEec
Confidence            468999998 999999999999988446777654311                 0111    11211  23333  3333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCH---------HHHHHHHHHHHHcCCc-EEEEc
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNI---------DTKVALLAACVRRGLK-VLCAT  207 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~---------~~r~~l~~~c~~~~ip-~I~~~  207 (448)
                      + +.+.....+.+ +|.||.+....         ..-..+.++|.+.+++ +|..+
T Consensus        60 ~~d~~~l~~~~~~-~d~vi~~a~~~~~~~~~~~~~~~~~~~~aa~~~gv~~iv~~S  114 (299)
T 2wm3_A           60 QDDQVIMELALNG-AYATFIVTNYWESCSQEQEVKQGKLLADLARRLGLHYVVYSG  114 (299)
T ss_dssp             TTCHHHHHHHHTT-CSEEEECCCHHHHTCHHHHHHHHHHHHHHHHHHTCSEEEECC
T ss_pred             CCCHHHHHHHHhc-CCEEEEeCCCCccccchHHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            3 34556667776 99999987532         1233566778887765 55543

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=93.05  E-value=0.25  Score=46.28  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=30.2

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   47 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRK   47 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3577888898875 7999999999999996 67776653

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=93.02  E-value=0.13  Score=50.98  Aligned_cols=132  Identities=17%  Similarity=0.172  Sum_probs=79.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..||.|||+|.+|...+..|... |+.-+.++|.+                   ..|++.+++..   .  +..      
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~-------------------~~~~~~~~~~~---g--~~~------   54 (354)
T 3db2_A            5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRT-------------------EDKREKFGKRY---N--CAG------   54 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSS-------------------HHHHHHHHHHH---T--CCC------
T ss_pred             cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHHHc---C--CCC------
Confidence            35899999999999999999876 44434455543                   23444444332   1  110      


Q ss_pred             CCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChh
Q 013180          163 YDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPL  231 (448)
Q Consensus       163 ~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl  231 (448)
                        ..+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+...+          -..+.+.--...-++|.
T Consensus        55 --~~~~~~~l~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~  131 (354)
T 3db2_A           55 --DATMEALLAREDVEMVIITVPND-KHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGA  131 (354)
T ss_dssp             --CSSHHHHHHCSSCCEEEECSCTT-SHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHH
T ss_pred             --cCCHHHHhcCCCCCEEEEeCChH-HHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHH
Confidence              134566663 3589999998874 445555667788888887433222100          01122222334457899


Q ss_pred             hHHHHHHHhhhcCccCCee
Q 013180          232 SRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       232 ~~~~r~~l~~~~g~~g~i~  250 (448)
                      .+.+|+.++.  |..|.+.
T Consensus       132 ~~~~k~~i~~--g~iG~i~  148 (354)
T 3db2_A          132 LRKMKEMIDT--KEIGEVS  148 (354)
T ss_dssp             HHHHHHHHHT--TTTCCEE
T ss_pred             HHHHHHHHhc--CCCCCeE
Confidence            9999888865  5556544

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=93.02  E-value=0.12  Score=51.72  Aligned_cols=35  Identities=37%  Similarity=0.588  Sum_probs=30.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~  227 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDID  227 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            36799999999999999999999999889887743

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=93.00  E-value=0.3  Score=48.29  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC---CCceEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF---PECHIDA  158 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in---P~v~v~~  158 (448)
                      +..||.|+|+|++|+.++..|+..|. .+|.|+|-|                   ..|++..+..|.+..   ..+++..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~-------------------~~~~~g~~~dl~~~~~~~~~~~i~~   68 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF-------------------KDKTKGDAIDLSNALPFTSPKKIYS   68 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC-------------------HHHHHHHHHHHHTTGGGSCCCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC-------------------chHhHHHHHHHHHHHHhcCCeEEEE
Confidence            34689999999999999999998884 568887743                   234444344444332   3445543


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCC
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        .     . .+-+.+ .|+||.+...
T Consensus        69 --~-----~-~~a~~~-aDvVii~ag~   86 (326)
T 2zqz_A           69 --A-----E-YSDAKD-ADLVVITAGA   86 (326)
T ss_dssp             --C-----C-GGGGGG-CSEEEECCCC
T ss_pred             --C-----C-HHHhCC-CCEEEEcCCC
Confidence              1     1 122444 9999988753

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=92.98  E-value=0.4  Score=46.25  Aligned_cols=103  Identities=17%  Similarity=0.232  Sum_probs=59.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ++|+|.| .|++|+++++.|+..|. +++++|...       |.           ......+.+.. .+  +++.+...+
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~-------~~-----------~~~~~~~~l~~-~~--~~~~~~~Dl   59 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLS-------RK-----------GATDNLHWLSS-LG--NFEFVHGDI   59 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC-------ST-----------THHHHHHHHHT-TC--CCEEEECCT
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCC-EEEEEeCCC-------cc-----------Cchhhhhhhcc-CC--ceEEEEcCC
Confidence            4799998 59999999999999995 677766431       10           00111122222 12  233333333


Q ss_pred             C-ccchHHHhcC-CCCeEEEccCCH-----------------HHHHHHHHHHHHcCCc--EEEEcCC
Q 013180          164 D-ASSEEEILSG-HPDFVLDCIDNI-----------------DTKVALLAACVRRGLK--VLCATGA  209 (448)
Q Consensus       164 ~-~~~~~~ll~~-~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~ip--~I~~~g~  209 (448)
                      + .+...+++.+ ++|+||.|....                 ..-..+.++|.+.+++  +|..++.
T Consensus        60 ~d~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~  126 (347)
T 1orr_A           60 RNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTN  126 (347)
T ss_dssp             TCHHHHHHHHHHHCCSEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEG
T ss_pred             CCHHHHHHHHhccCCCEEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccH
Confidence            3 3334444431 389999887521                 1123567888887764  6665544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=92.98  E-value=0.27  Score=50.77  Aligned_cols=87  Identities=18%  Similarity=0.231  Sum_probs=55.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|.|.|.||+.+++.|...|..-+.+.|.+         ..++.++-+-..+...+++.-..+......    
T Consensus       232 ~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~---------G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a----  298 (440)
T 3aog_A          232 QVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHT---------GTVYNEAGIDPYDLLRHVQEFGGVRGYPKA----  298 (440)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS---------CEEECTTCCCHHHHHHHHHHTSSSTTCTTS----
T ss_pred             CccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCC---------cEEECCCCCCHHHHHHHHHhcCCcccCCCc----
Confidence            4778999999999999999999999998888888876         224444444444444444432111111000    


Q ss_pred             ccCCccchHHHhcCCCCeEEEcc
Q 013180          161 LLYDASSEEEILSGHPDFVLDCI  183 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~  183 (448)
                      ..++   .++++.-++|+++-|.
T Consensus       299 ~~i~---~~ei~~~~~DIlvPcA  318 (440)
T 3aog_A          299 EPLP---AADFWGLPVEFLVPAA  318 (440)
T ss_dssp             EECC---HHHHTTCCCSEEEECS
T ss_pred             eEcC---chhhhcCCCcEEEecC
Confidence            1111   2355555699999985

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=92.95  E-value=0.39  Score=45.06  Aligned_cols=37  Identities=24%  Similarity=0.548  Sum_probs=30.8

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   41 (259)
T 4e6p_A            4 KRLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADID   41 (259)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3577889999976 8999999999999997 47777654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=92.95  E-value=0.2  Score=48.99  Aligned_cols=36  Identities=22%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -.+.+|+|.|+||+|..++..+...|...+..+|..
T Consensus       159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~  194 (346)
T 4a2c_A          159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDIS  194 (346)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEech
Confidence            357899999999999999999999999998887753

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=92.92  E-value=0.37  Score=45.87  Aligned_cols=81  Identities=12%  Similarity=0.157  Sum_probs=48.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .++++.|+|.|+ ||+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+..+.  +..+
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~~--~~~~   78 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIA-VYGCARD-------------------AKNVSAAVDGLRAAGHD--VDGS   78 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHTTTCC--EEEE
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            356788999976 89999999999999975 7776643                   23455566666665543  4444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        79 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA  109 (279)
T 3sju_A           79 SCDVTSTDEVHAAVAAAVERFGPIGILVNSA  109 (279)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            433332 22233221      2477777654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=92.91  E-value=0.092  Score=51.48  Aligned_cols=35  Identities=23%  Similarity=0.462  Sum_probs=31.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..+|.|||+|.+|+.+|..|+..|..+++++|.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            36899999999999999999999986699998763

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=92.89  E-value=0.17  Score=50.26  Aligned_cols=101  Identities=16%  Similarity=0.267  Sum_probs=57.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-------CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC--CC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-------GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF--PE  153 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-------GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in--P~  153 (448)
                      +.-+|.|+|||.+|+.+++.|...       ++.=..+.|.+.-         .+.. ++...+..   +...+..  +.
T Consensus         3 k~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~---------~~~~-~idl~~~~---~~~~~~g~~~~   69 (325)
T 3ing_A            3 KEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSY---------ASGR-NLDISSII---SNKEKTGRISD   69 (325)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBE---------EECS-SCCHHHHH---HHHHHHSCSCS
T ss_pred             ceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChh---------hccc-ccCHHHHH---HHhhhcCCCCc
Confidence            346899999999999999999874       2333344444321         1111 12211221   2222211  11


Q ss_pred             ceEEEEeccCCccchHHHh-cCCCCeEEEccCCH---HHHHHHHHHHHHcCCcEEEE
Q 013180          154 CHIDAKVLLYDASSEEEIL-SGHPDFVLDCIDNI---DTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll-~~~~D~VIda~Dn~---~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .       .++   ..+++ ..++|+||+|+.+.   ..-..+...|.++|+.++.+
T Consensus        70 ~-------~~d---~~e~l~~~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta  116 (325)
T 3ing_A           70 R-------AFS---GPEDLMGEAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA  116 (325)
T ss_dssp             S-------BCC---SGGGGTTSCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred             c-------cCC---HHHHhcCCCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence            1       011   12333 23599999999763   34456778889999999985

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=92.88  E-value=0.3  Score=45.19  Aligned_cols=36  Identities=25%  Similarity=0.463  Sum_probs=29.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~   40 (258)
T 3afn_B            4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRK   40 (258)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCC
Confidence            367788999876 8999999999999996 47776654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.88  E-value=0.29  Score=45.34  Aligned_cols=80  Identities=15%  Similarity=0.138  Sum_probs=49.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+                   ..+.+.+.+.+.+..+.  +..+.
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~-------------------~~~~~~~~~~~~~~~~~--~~~~~   60 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATS-------------------QASAEKFENSMKEKGFK--ARGLV   60 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS-------------------HHHHHHHHHHHHHTTCC--EEEEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC-------------------HHHHHHHHHHHHhcCCc--eEEEE
Confidence            56788899876 8999999999999996 47776643                   23455556666665543  44443


Q ss_pred             ccCC-ccchHHHhc------CCCCeEEEcc
Q 013180          161 LLYD-ASSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       161 ~~~~-~~~~~~ll~------~~~D~VIda~  183 (448)
                      ..++ .+...+++.      +..|+||.+.
T Consensus        61 ~D~~~~~~~~~~~~~~~~~~~~id~li~~A   90 (247)
T 3lyl_A           61 LNISDIESIQNFFAEIKAENLAIDILVNNA   90 (247)
T ss_dssp             CCTTCHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred             ecCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            3333 223333321      2467777664

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=92.87  E-value=0.34  Score=45.25  Aligned_cols=36  Identities=28%  Similarity=0.555  Sum_probs=30.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+++.|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   39 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDIN   39 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578899999986 7999999999999997 47776543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=92.87  E-value=0.22  Score=47.32  Aligned_cols=42  Identities=29%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             cCHHHHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           74 FGVESQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        74 ~G~~~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|...+..|++++|+|.|+ ||+|.++|+.|++.|. ++.++|.
T Consensus        17 ~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r   59 (266)
T 3grp_A           17 QGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGT   59 (266)
T ss_dssp             ----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            4444455688899999976 7999999999999996 5777664

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.87  E-value=0.091  Score=51.76  Aligned_cols=38  Identities=39%  Similarity=0.656  Sum_probs=31.7

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ++.+..||.|||+|.+|..++..|+..|. .+|.|+|-+
T Consensus         2 ~~m~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             --CCCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            34566799999999999999999999886 679998865

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=92.87  E-value=0.31  Score=47.09  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|..+++.|+..|. ++.++|.+
T Consensus        38 ~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   74 (293)
T 3rih_A           38 DLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARS   74 (293)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            467888888876 7999999999999997 68887754

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=92.83  E-value=0.47  Score=46.71  Aligned_cols=75  Identities=16%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      -..++|+|||+|+.|...+..|... ++.++.++|.+                   ..|++.+++++....  +.+. . 
T Consensus       123 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-------------------~~~a~~la~~~~~~~--~~~~-~-  179 (322)
T 1omo_A          123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVR-------------------EKAAKKFVSYCEDRG--ISAS-V-  179 (322)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSS-------------------HHHHHHHHHHHHHTT--CCEE-E-
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhcC--ceEE-E-
Confidence            3567999999999999999999874 68888886542                   346677777665421  2332 1 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                           ++.++.+ + +|+|+.|+-+.
T Consensus       180 -----~~~~e~v-~-aDvVi~aTp~~  198 (322)
T 1omo_A          180 -----QPAEEAS-R-CDVLVTTTPSR  198 (322)
T ss_dssp             -----CCHHHHT-S-SSEEEECCCCS
T ss_pred             -----CCHHHHh-C-CCEEEEeeCCC
Confidence                 2455666 5 99999999863

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=92.79  E-value=0.6  Score=45.65  Aligned_cols=130  Identities=17%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             CcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||.||||| -+|...+..|...|+.-+.++|.+.-      |..+                  .+..|.+++  +.   
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~------~~~~------------------~~~~~~~~~--~~---   54 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDS------VGII------------------DSISPQSEF--FT---   54 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCC------CGGG------------------GGTCTTCEE--ES---
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHH------HHHH------------------HhhCCCCcE--EC---
Confidence            589999995 49999999999988877777776521      2111                  112333322  11   


Q ss_pred             CccchHHHh----------cCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEccc
Q 013180          164 DASSEEEIL----------SGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADL  223 (448)
Q Consensus       164 ~~~~~~~ll----------~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di  223 (448)
                         +.++++          ..++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+...
T Consensus        55 ---~~~~ll~~~~~l~~~~~~~vD~V~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~  130 (318)
T 3oa2_A           55 ---EFEFFLDHASNLKRDSATALDYVSICSPN-YLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNI  130 (318)
T ss_dssp             ---SHHHHHHHHHHHTTSTTTSCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             ---CHHHHHHhhhhhhhccCCCCcEEEECCCc-HHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence               122333          2358888888877 5566666777777887776322111000          001122222


Q ss_pred             ccccCChhhHHHHHHHhhhcCccCCe
Q 013180          224 RESTNDPLSRAVMHRLRKDYGIEGGI  249 (448)
Q Consensus       224 ~~~~~dpl~~~~r~~l~~~~g~~g~i  249 (448)
                      ...-++|..+.+|+.+..  |..|.+
T Consensus       131 ~~~R~~p~~~~~k~~i~~--g~iG~i  154 (318)
T 3oa2_A          131 LQLRHHQAIIALKDKVAR--EKSPHK  154 (318)
T ss_dssp             CGGGGCHHHHHHHHHHHH--S-CSSC
T ss_pred             EhhhcCHHHHHHHHHHhc--CCCCce
Confidence            334577888888888765  444443

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=92.77  E-value=0.55  Score=49.14  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=42.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHH
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH  146 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~  146 (448)
                      |+.++|+|-|.|-||+++|+.|...|..-+.+.|.+         -.++.++.+-..+...+++.
T Consensus       242 l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~---------G~iyd~~Gid~~~l~~~k~~  297 (501)
T 3mw9_A          242 FGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESD---------GSIWNPDGIDPKELEDFKLQ  297 (501)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSS---------CEEECTTCCCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC---------ceEECCCCCCHHHHHHHHHh
Confidence            678999999999999999999999999888888754         24555555555554444443

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=92.77  E-value=0.37  Score=47.27  Aligned_cols=86  Identities=15%  Similarity=0.167  Sum_probs=52.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++++.|+|.|+ ||+|.++++.|++.|.. +.+.+.+..              +....+.+.+.+.+....+.  +..+.
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~-V~~~~r~~~--------------~r~~~~~~~l~~~~~~~~~~--~~~~~   65 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHR-VYASMRDIV--------------GRNASNVEAIAGFARDNDVD--LRTLE   65 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEESCTT--------------TTTHHHHHHHHHHHHHHTCC--EEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEecCccc--------------ccCHHHHHHHHHHHHhcCCc--EEEEE
Confidence            45677888876 89999999999999964 555444321              12234566666666665544  44444


Q ss_pred             ccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          161 LLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ..++. +...+++.      +..|+||.+..
T Consensus        66 ~Dvtd~~~v~~~~~~~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred             eecCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            44433 33344332      35999998764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.77  E-value=0.3  Score=46.62  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +..++++.|+|.|+ ||+|.++++.|++.|. ++.++|..                  ...+.+.+.+.+.+..+  ++.
T Consensus        24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~   82 (280)
T 4da9_A           24 MTQKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIG------------------DAEGVAPVIAELSGLGA--RVI   82 (280)
T ss_dssp             CSCCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC------------------CHHHHHHHHHHHHHTTC--CEE
T ss_pred             hhccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCC------------------CHHHHHHHHHHHHhcCC--cEE
Confidence            44577888999976 7999999999999997 47776631                  11344555566665554  344


Q ss_pred             EEeccCC-ccchHHHhc------CCCCeEEEccC
Q 013180          158 AKVLLYD-ASSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       158 ~~~~~~~-~~~~~~ll~------~~~D~VIda~D  184 (448)
                      .+...++ .+....++.      +..|++|.+..
T Consensus        83 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnAg  116 (280)
T 4da9_A           83 FLRADLADLSSHQATVDAVVAEFGRIDCLVNNAG  116 (280)
T ss_dssp             EEECCTTSGGGHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4444443 233333332      24788776543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=92.77  E-value=0.22  Score=48.35  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=28.3

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++.||+|+|+ |..|..++++|...|..-+..+|+.
T Consensus         6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~   41 (288)
T 2nu8_A            6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPG   41 (288)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3578999999 9999999999999997644455553

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.76  E-value=0.57  Score=44.40  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=56.6

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ..|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+...      .-...+.+.+.+.+.+..+  ++..
T Consensus        11 ~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~   81 (280)
T 3pgx_A           11 GSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYA------PASPEDLDETARLVEDQGR--KALT   81 (280)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSC------CCCHHHHHHHHHHHHTTTC--CEEE
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecccccccccccc------ccCHHHHHHHHHHHHhcCC--eEEE
Confidence            4578899999976 7999999999999997 578887653222211111      1123455666666666544  3444


Q ss_pred             EeccCC-ccchHHHhc------CCCCeEEEcc
Q 013180          159 KVLLYD-ASSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       159 ~~~~~~-~~~~~~ll~------~~~D~VIda~  183 (448)
                      +...++ .+...+++.      ++.|++|.+.
T Consensus        82 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  113 (280)
T 3pgx_A           82 RVLDVRDDAALRELVADGMEQFGRLDVVVANA  113 (280)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECC
T ss_pred             EEcCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            444433 233333332      2478777654

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=92.75  E-value=0.82  Score=42.56  Aligned_cols=90  Identities=13%  Similarity=0.209  Sum_probs=57.8

Q ss_pred             CCcEEEEcCChHHHHHHHH--HHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAM--LLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~--LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+|+|||+|.+|..++.+  +...|+.=+.++|.|.=..   .+. .      +                .+.|..   
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~---g~~-i------~----------------gv~V~~---  135 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKI---GTE-V------G----------------GVPVYN---  135 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTT---TCE-E------T----------------TEEEEE---
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHH---HhH-h------c----------------CCeeec---
Confidence            4689999999999999995  3355777788888774211   111 0      0                122321   


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                         .++.++++.. .|+|+-|+.+... ..+.+.|.+.|++.|...
T Consensus       136 ---~~dl~eli~~-~D~ViIAvPs~~~-~ei~~~l~~aGi~~Ilnf  176 (215)
T 2vt3_A          136 ---LDDLEQHVKD-ESVAILTVPAVAA-QSITDRLVALGIKGILNF  176 (215)
T ss_dssp             ---GGGHHHHCSS-CCEEEECSCHHHH-HHHHHHHHHTTCCEEEEC
T ss_pred             ---hhhHHHHHHh-CCEEEEecCchhH-HHHHHHHHHcCCCEEEEc
Confidence               2346777766 4999999987554 478888999999966644

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=92.74  E-value=0.46  Score=44.69  Aligned_cols=83  Identities=20%  Similarity=0.263  Sum_probs=52.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .++++.|+|.|+ ||+|.++++.|++.|. ++.++|.+.                   .+.+.+.+.+.+..+..++..+
T Consensus        10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~   69 (267)
T 1iy8_A           10 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSS-------------------EGLEASKAAVLETAPDAEVLTT   69 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTCCEEEE
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCH-------------------HHHHHHHHHHHhhcCCceEEEE
Confidence            467888999975 7999999999999996 577765431                   2344455566665555556655


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|+||.+.
T Consensus        70 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  100 (267)
T 1iy8_A           70 VADVSDEAQVEAYVTATTERFGRIDGFFNNA  100 (267)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             EccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            544433 33333332      2477777654

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=92.73  E-value=0.072  Score=52.71  Aligned_cols=35  Identities=37%  Similarity=0.489  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~  200 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSR  200 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCC
Confidence            36789999999999999999999999888887654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=92.73  E-value=0.26  Score=46.28  Aligned_cols=32  Identities=19%  Similarity=0.252  Sum_probs=27.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++..|...| ..+.++|.+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g-~~v~~~~~~   35 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTP-HELIISGSS   35 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSS-CEEEEECSS
T ss_pred             cEEEEECCCHHHHHHHHHHHhCC-CeEEEECCC
Confidence            47999999999999999999998 467776643

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=92.71  E-value=0.26  Score=49.00  Aligned_cols=130  Identities=13%  Similarity=0.121  Sum_probs=76.9

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..||.|||||.+|.. .+..|... ++.-..++|.|.      .|                    +.+..+.+++  +  
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~------~~--------------------~~~~~~~~~~--~--   54 (362)
T 3fhl_A            5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSK------EL--------------------SKERYPQASI--V--   54 (362)
T ss_dssp             CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSC------CG--------------------GGTTCTTSEE--E--
T ss_pred             ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCH------HH--------------------HHHhCCCCce--E--
Confidence            458999999999996 77777766 554445667662      11                    1122233322  1  


Q ss_pred             cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                          .+.++++.. ++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....-++|
T Consensus        55 ----~~~~~ll~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p  129 (362)
T 3fhl_A           55 ----RSFKELTEDPEIDLIVVNTPD-NTHYEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDA  129 (362)
T ss_dssp             ----SCSHHHHTCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSH
T ss_pred             ----CCHHHHhcCCCCCEEEEeCCh-HHHHHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCH
Confidence                234556543 58999999887 4556667778888998887432221000          0111222223344688


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       130 ~~~~~k~~i~~--G~iG~i~  147 (362)
T 3fhl_A          130 DFLTVRDILAK--SLLGRLV  147 (362)
T ss_dssp             HHHHHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHHHHc--CCCCCeE
Confidence            88888888765  5556544

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.70  E-value=0.79  Score=47.28  Aligned_cols=40  Identities=28%  Similarity=0.427  Sum_probs=32.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLN  125 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLn  125 (448)
                      .+|.|||+|.+|..+|..|+..|. +++++|.|.-....++
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~   42 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLN   42 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHH
Confidence            589999999999999999999996 6889887754333343

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=92.68  E-value=0.47  Score=44.53  Aligned_cols=29  Identities=31%  Similarity=0.350  Sum_probs=25.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +|.|||+|.+|+.++..|++.|. +++++|
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~-~V~~~~   30 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSL   30 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECC
T ss_pred             eEEEEechHHHHHHHHHHHHCCC-eEEEeC
Confidence            69999999999999999999996 566643

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=92.64  E-value=0.72  Score=43.77  Aligned_cols=97  Identities=15%  Similarity=0.168  Sum_probs=56.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|+++.|+|.|+ ||+|.++|+.|++.|.. +.++|.+.-.........+.   .-...+.+.+.+.+....+  ++..+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~-V~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~   81 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGAD-IIAVDICKPIRAGVVDTAIP---ASTPEDLAETADLVKGHNR--RIVTA   81 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCSBTTBCCCSSC---CCCHHHHHHHHHHHHTTTC--CEEEE
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeccccccccccccccc---cCCHHHHHHHHHHHhhcCC--ceEEE
Confidence            577899999986 69999999999999965 88887653222111111111   1113345555566665554  44444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        82 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA  112 (286)
T 3uve_A           82 EVDVRDYDALKAAVDSGVEQLGRLDIIVANA  112 (286)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            444432 33333332      2478887664

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=92.63  E-value=0.49  Score=45.08  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   65 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARH   65 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            477889999975 8999999999999996 47777653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=92.63  E-value=0.35  Score=47.72  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             CcEEEEcCChHHH-HHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGS-HAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs-~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .||.|||||.+|. ..+..|... ++.-..++|.+                     +++.+++...  .|.+++  +   
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~---------------------~~~~~a~~~~--~~~~~~--~---   54 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH---------------------VNEKAAAPFK--EKGVNF--T---   54 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT---------------------CCHHHHHHHH--TTTCEE--E---
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC---------------------HHHHHHHhhC--CCCCeE--E---
Confidence            4899999999998 566666654 44434465654                     1111222221  133332  2   


Q ss_pred             CCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCCceEEcccccccCChh
Q 013180          163 YDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPTRIRVADLRESTNDPL  231 (448)
Q Consensus       163 ~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt~i~i~di~~~~~dpl  231 (448)
                         .+.++++.. ++|+|+.|+.+ .....+...|.+.|++++.---.+...          .-..+.+.-....-++|.
T Consensus        55 ---~~~~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~  130 (349)
T 3i23_A           55 ---ADLNELLTDPEIELITICTPA-HTHYDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGD  130 (349)
T ss_dssp             ---SCTHHHHSCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHH
T ss_pred             ---CCHHHHhcCCCCCEEEEeCCc-HHHHHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHH
Confidence               234566653 58999999977 556677778888999988732222100          011122222334457788


Q ss_pred             hHHHHHHHhhhcCccCCee
Q 013180          232 SRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       232 ~~~~r~~l~~~~g~~g~i~  250 (448)
                      .+.+|+.+..  |..|.+.
T Consensus       131 ~~~~~~~i~~--g~iG~i~  147 (349)
T 3i23_A          131 YLAMKQVVEQ--GFLGEIN  147 (349)
T ss_dssp             HHHHHHHHHH--TTTCSEE
T ss_pred             HHHHHHHHhc--CCCCCEE
Confidence            8888888865  5455443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=92.63  E-value=0.45  Score=44.81  Aligned_cols=81  Identities=15%  Similarity=0.158  Sum_probs=51.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+...  ++..+
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~--~~~~~   65 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGAD-LVLAART-------------------VERLEDVAKQVTDTGR--RALSV   65 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEE
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCE-EEEEeCC-------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            478889999976 68999999999999974 7776643                   2345555666665543  34444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +...+++.      ++.|++|.+.
T Consensus        66 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nA   96 (264)
T 3ucx_A           66 GTDITDDAQVAHLVDETMKAYGRVDVVINNA   96 (264)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHTSCCSEEEECC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            433332 23333322      2477777654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=92.62  E-value=0.48  Score=45.26  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~   51 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK   51 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            577889999975 7999999999999996 57776643

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=92.62  E-value=0.23  Score=48.85  Aligned_cols=36  Identities=22%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus       141 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~  176 (311)
T 2cuk_A          141 DLQGLTLGLVGMGRIGQAVAKRALAFGM-RVVYHART  176 (311)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5889999999999999999999999996 57777654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=92.61  E-value=0.18  Score=50.13  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|.|||+|.+|+.++..|+++|. +++++|.+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~-~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCR-EVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEE-EEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            79999999999999999999984 67777654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.61  E-value=1.1  Score=41.96  Aligned_cols=98  Identities=11%  Similarity=0.029  Sum_probs=58.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .++|+|.|+|.+|+++++.|...|. +++.++.+.                   .+...+.    .  +.  ++.+...+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~-------------------~~~~~~~----~--~~--~~~~~~D~   56 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNP-------------------DQMEAIR----A--SG--AEPLLWPG   56 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCG-------------------GGHHHHH----H--TT--EEEEESSS
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcCh-------------------hhhhhHh----h--CC--CeEEEecc
Confidence            4789999999999999999999995 566655431                   1222111    1  22  34443333


Q ss_pred             CccchHHHhcCCCCeEEEccCCH----HHHHHHHHHHHH--cC-CcEEEEcCCCCccC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNI----DTKVALLAACVR--RG-LKVLCATGAGARAD  214 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~----~~r~~l~~~c~~--~~-ip~I~~~g~G~k~d  214 (448)
                      +.  .+  +. ++|+||.|....    .....+.++|.+  .+ ..+|..++.+..++
T Consensus        57 ~d--~~--~~-~~d~vi~~a~~~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~  109 (286)
T 3ius_A           57 EE--PS--LD-GVTHLLISTAPDSGGDPVLAALGDQIAARAAQFRWVGYLSTTAVYGD  109 (286)
T ss_dssp             SC--CC--CT-TCCEEEECCCCBTTBCHHHHHHHHHHHHTGGGCSEEEEEEEGGGGCC
T ss_pred             cc--cc--cC-CCCEEEECCCccccccHHHHHHHHHHHhhcCCceEEEEeecceecCC
Confidence            32  22  44 499999988532    223456677777  44 34666554443333

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=92.61  E-value=0.43  Score=44.70  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=29.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~   40 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRN   40 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            356788999976 6999999999999997 58887753

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=92.60  E-value=0.14  Score=53.60  Aligned_cols=124  Identities=14%  Similarity=0.095  Sum_probs=68.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh-CCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI-FPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i-nP~v~v~~~~~~  162 (448)
                      ..+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+...-.   ......-+..+.+.+..+ .+++-+...+..
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~-~V~v~dr~~~~~~~l~~~g~---~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~   79 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA---KGTKVVGAQSLKEMVSKLKKPRRIILLVKAG   79 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT---TTSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhccc---CCCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence            4689999999999999999999996 68888876432222211100   000000011122222222 233333332221


Q ss_pred             -CCccchHHHhc--CCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          163 -YDASSEEEILS--GHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       163 -~~~~~~~~ll~--~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                       ...+...++..  .+-++|||+.... ..-..+.+.+.+.++.++.+...|+
T Consensus        80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg  132 (484)
T 4gwg_A           80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGG  132 (484)
T ss_dssp             HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCC
Confidence             11112223321  2368999988754 3445666777888999998755443

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.60  E-value=0.29  Score=48.35  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=30.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..++..+...|.+++..+|.+
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  205 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS  205 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            35789999999999999998888999888887653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=92.57  E-value=0.35  Score=45.37  Aligned_cols=81  Identities=12%  Similarity=0.229  Sum_probs=50.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|.. +.++|.+                   ..+.+.+.+.+.+..+.  +..+
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~-------------------~~~~~~~~~~~~~~~~~--~~~~   66 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGAS-VVVTDLK-------------------SEGAEAVAAAIRQAGGK--AIGL   66 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCE-EEEEESS-------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCE-EEEEeCC-------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            467888999976 89999999999999975 7776643                   23455566666665543  4444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +...+++.      +..|++|.+.
T Consensus        67 ~~Dv~d~~~v~~~~~~~~~~~g~id~lv~nA   97 (256)
T 3gaf_A           67 ECNVTDEQHREAVIKAALDQFGKITVLVNNA   97 (256)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            333332 22333322      2477777554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=92.56  E-value=1.7  Score=44.90  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=36.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH  127 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq  127 (448)
                      ..-||.|||+|-+|..+|.+|++.|. +++++|-|.=....|++.
T Consensus         7 ~~~~~~vIGlG~vG~~~A~~La~~G~-~V~~~D~~~~kv~~l~~g   50 (446)
T 4a7p_A            7 GSVRIAMIGTGYVGLVSGACFSDFGH-EVVCVDKDARKIELLHQN   50 (446)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHTTT
T ss_pred             CceEEEEEcCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHhcC
Confidence            35689999999999999999999995 689999886655556554

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.56  E-value=0.12  Score=50.02  Aligned_cols=36  Identities=28%  Similarity=0.455  Sum_probs=32.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|+|+|+|++|..+++.|...|. ++.++|..
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~  187 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARE  187 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            4788999999999999999999999998 78887764

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=92.53  E-value=0.15  Score=49.53  Aligned_cols=121  Identities=16%  Similarity=0.140  Sum_probs=66.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .+|.|||+|.+|...+..|... ++.-+.++|.+.-....+..                          .+  ..+    
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~--------------------------~~--~~~----   58 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPP--------------------------GC--VIE----   58 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCT--------------------------TC--EEE----
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHh--------------------------hC--ccc----
Confidence            5899999999999999999986 45445577765321111100                          01  111    


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChhh
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPLS  232 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl~  232 (448)
                        .+.++++. .++|+|+.|+.+.. ...+...|.+.|++++.---.+....          -..+.+..-...-++|..
T Consensus        59 --~~~~~~l~~~~~D~V~i~tp~~~-h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~  135 (315)
T 3c1a_A           59 --SDWRSVVSAPEVEAVIIATPPAT-HAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAW  135 (315)
T ss_dssp             --SSTHHHHTCTTCCEEEEESCGGG-HHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHH
T ss_pred             --CCHHHHhhCCCCCEEEEeCChHH-HHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHH
Confidence              12344543 24777777776533 33444455667777665322211000          011122222334467888


Q ss_pred             HHHHHHHh
Q 013180          233 RAVMHRLR  240 (448)
Q Consensus       233 ~~~r~~l~  240 (448)
                      +.+|+.++
T Consensus       136 ~~~~~~i~  143 (315)
T 3c1a_A          136 EALKADLT  143 (315)
T ss_dssp             HHHHHTHH
T ss_pred             HHHHHHHH
Confidence            88888776

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=92.52  E-value=0.28  Score=47.01  Aligned_cols=32  Identities=28%  Similarity=0.408  Sum_probs=28.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~   33 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGF-DVTVWNRN   33 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence            479999999999999999999995 58887655

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=92.50  E-value=0.12  Score=51.25  Aligned_cols=35  Identities=26%  Similarity=0.445  Sum_probs=31.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...+|.|+|+|.+|+.+|..|+..|...+.|+|-|
T Consensus        13 ~~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~   47 (328)
T 2hjr_A           13 MRKKISIIGAGQIGSTIALLLGQKDLGDVYMFDII   47 (328)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            34689999999999999999999998559999876

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=92.50  E-value=0.41  Score=47.48  Aligned_cols=130  Identities=16%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..||.|||+|.+|.. .+..|... |+.-..++|.|.                   .|       +.+..+.+++  +  
T Consensus         5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~-------------------~~-------~~~~~~~~~~--~--   54 (358)
T 3gdo_A            5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRT-------------------EE-------VKRDFPDAEV--V--   54 (358)
T ss_dssp             CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCH-------------------HH-------HHHHCTTSEE--E--
T ss_pred             cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCH-------------------HH-------HHhhCCCCce--E--
Confidence            458999999999996 67777655 444334555542                   11       1223343332  1  


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                          .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....-++|
T Consensus        55 ----~~~~~ll~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p  129 (358)
T 3gdo_A           55 ----HELEEITNDPAIELVIVTTPS-GLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDN  129 (358)
T ss_dssp             ----SSTHHHHTCTTCCEEEECSCT-TTHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSH
T ss_pred             ----CCHHHHhcCCCCCEEEEcCCc-HHHHHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCH
Confidence                23456665 358999999977 4556666778888999887432221000          0011122222334678


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       130 ~~~~~k~~i~~--g~iG~i~  147 (358)
T 3gdo_A          130 DFLTIKKLISE--GSLEDIN  147 (358)
T ss_dssp             HHHHHHHHHHT--TSSCSCC
T ss_pred             HHHHHHHHHhc--CCCCceE
Confidence            88888888764  5455443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=92.48  E-value=0.44  Score=44.77  Aligned_cols=35  Identities=37%  Similarity=0.643  Sum_probs=28.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN   40 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECC
Confidence            45678999976 8999999999999996 57776643

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=92.47  E-value=0.82  Score=44.85  Aligned_cols=133  Identities=14%  Similarity=0.149  Sum_probs=75.9

Q ss_pred             CcEEEEcCChHHHHHHHHHH-Hc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGSHAAAMLL-RS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~La-rs-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+|.|||+|.+|...+..|. +. |+.-+.++|.+                   ..|++.+++.+   ...+  ..+   
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~-------------------~~~~~~~~~~~---g~~~--~~~---   55 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVN-------------------QEAAQKVVEQY---QLNA--TVY---   55 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSS-------------------HHHHHHHHHHT---TCCC--EEE---
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCC-------------------HHHHHHHHHHh---CCCC--eee---
Confidence            47999999999999999998 43 43333354432                   23444443332   1111  111   


Q ss_pred             CCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEE-cccccccCCh
Q 013180          163 YDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRV-ADLRESTNDP  230 (448)
Q Consensus       163 ~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i-~di~~~~~dp  230 (448)
                         .+.++++.. ++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+ .--...-++|
T Consensus        56 ---~~~~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p  131 (344)
T 3mz0_A           56 ---PNDDSLLADENVDAVLVTSWG-PAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDS  131 (344)
T ss_dssp             ---SSHHHHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSH
T ss_pred             ---CCHHHHhcCCCCCEEEECCCc-hhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCH
Confidence               234566543 58999999966 4455666678889998887332221000          001111 1122334678


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       132 ~~~~~k~~i~~--g~iG~i~  149 (344)
T 3mz0_A          132 GYVQLKEALDN--HVIGEPL  149 (344)
T ss_dssp             HHHHHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHHHHc--CCCCCcE
Confidence            88888887765  5555443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.44  E-value=0.14  Score=48.17  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=59.3

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ...+..++|.|||+|.+|+.+|..|++.|. +++++|.+.=.  .+.+.   .....+....    +.+.+..+....  
T Consensus        14 ~~~~~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~--~~~~~---~~~~~~~~~~----~~~~~~~~~~~~--   81 (245)
T 3dtt_A           14 NLYFQGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKA--TLARA---EPDAMGAPPF----SQWLPEHPHVHL--   81 (245)
T ss_dssp             -----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHH--HHTCC----------CCH----HHHGGGSTTCEE--
T ss_pred             ccccCCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhh--hhhhh---hhhhhcchhh----hHHHhhcCceec--
Confidence            347889999999999999999999999996 68888765311  00000   0011111111    112211222211  


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHH-H-HHcCCcEEEEc
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAA-C-VRRGLKVLCAT  207 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~-c-~~~~ip~I~~~  207 (448)
                             .+..+.+.. +|+||-|+-+......+.+. . ...+..+|+.+
T Consensus        82 -------~~~~e~~~~-aDvVilavp~~~~~~~~~~i~~~~l~g~ivi~~s  124 (245)
T 3dtt_A           82 -------AAFADVAAG-AELVVNATEGASSIAALTAAGAENLAGKILVDIA  124 (245)
T ss_dssp             -------EEHHHHHHH-CSEEEECSCGGGHHHHHHHHCHHHHTTSEEEECC
T ss_pred             -------cCHHHHHhc-CCEEEEccCcHHHHHHHHHhhhhhcCCCEEEECC
Confidence                   233455554 99999999887666555443 1 12566666654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=92.43  E-value=0.36  Score=45.85  Aligned_cols=80  Identities=20%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++++.|+|.|+ ||+|.++|+.|++.|.. +.++|.+                   ..+.+.+.+.+.+..+  ++..+.
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~-V~~~~r~-------------------~~~~~~~~~~l~~~~~--~~~~~~   59 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAK-ILLGARR-------------------QARIEAIATEIRDAGG--TALAQV   59 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEEEESS-------------------HHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEE
Confidence            45678888876 79999999999999964 7776643                   1345556666665543  344444


Q ss_pred             ccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          161 LLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       161 ~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ..++. +....++.      +..|++|.+.
T Consensus        60 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA   89 (264)
T 3tfo_A           60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNA   89 (264)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            33332 22333321      2477777654

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=92.42  E-value=1.2  Score=42.84  Aligned_cols=101  Identities=19%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             cEEEEc-CChHHHHHHHHHHHc---CC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           86 YVVVIG-LGGVGSHAAAMLLRS---GV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        86 ~VlVVG-~GGvGs~va~~Lars---GV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|+|.| .|++|+++++.|+..   |+  -+++++|...-.. +.  .                  .+..+...-+++.+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~-~~--~------------------~~~~~~~~~~~~~~   60 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAG-NR--A------------------NLAPVDADPRLRFV   60 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTC-CG--G------------------GGGGGTTCTTEEEE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccC-ch--h------------------hhhhcccCCCeEEE
Confidence            699998 599999999999996   53  5788877542100 00  0                  01111111134444


Q ss_pred             eccCC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHcCC-cEEEEcC
Q 013180          160 VLLYD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRRGL-KVLCATG  208 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~i-p~I~~~g  208 (448)
                      ...++ .+...+++.+ +|+||.|....                 ..-..+.++|.+.++ .+|..++
T Consensus        61 ~~Dl~d~~~~~~~~~~-~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS  127 (337)
T 1r6d_A           61 HGDIRDAGLLARELRG-VDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVST  127 (337)
T ss_dssp             ECCTTCHHHHHHHTTT-CCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EcCCCCHHHHHHHhcC-CCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence            44443 3445566654 99999886421                 122466788888876 5665443

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=92.40  E-value=0.15  Score=48.43  Aligned_cols=31  Identities=26%  Similarity=0.428  Sum_probs=26.0

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|+|.|+ |.+|+++++.|. .| -+++.+|.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~   33 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS   33 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc
Confidence            6999997 999999999999 78 5688777553

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=92.40  E-value=0.64  Score=43.25  Aligned_cols=35  Identities=20%  Similarity=0.414  Sum_probs=29.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++++|.|+ ||+|.++++.|++.|. ++.++|.
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r   39 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAAR   39 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            367788999976 7999999999999996 5777664

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.40  E-value=0.63  Score=44.17  Aligned_cols=35  Identities=26%  Similarity=0.448  Sum_probs=28.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   62 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYAN   62 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56778888865 7999999999999996 46666543

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=92.39  E-value=0.31  Score=47.89  Aligned_cols=87  Identities=8%  Similarity=0.113  Sum_probs=55.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..||.|+|+|.+|..++..|.+. ++.-+.++|.+.-.      .       ++              .   .+..+   
T Consensus         3 ~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~------~-------~~--------------~---gv~~~---   49 (320)
T 1f06_A            3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL------D-------TK--------------T---PVFDV---   49 (320)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC------S-------SS--------------S---CEEEG---
T ss_pred             CCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH------h-------hc--------------C---CCcee---
Confidence            45899999999999999999887 44445566754211      1       11              1   12211   


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                         .+.++++. ++|+||+|+.+.. .......|.+.|+++|...-
T Consensus        50 ---~d~~~ll~-~~DvViiatp~~~-h~~~~~~al~aG~~Vv~ekp   90 (320)
T 1f06_A           50 ---ADVDKHAD-DVDVLFLCMGSAT-DIPEQAPKFAQFACTVDTYD   90 (320)
T ss_dssp             ---GGGGGTTT-TCSEEEECSCTTT-HHHHHHHHHTTTSEEECCCC
T ss_pred             ---CCHHHHhc-CCCEEEEcCCcHH-HHHHHHHHHHCCCEEEECCC
Confidence               12234443 5999999997643 34445567778998887543

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=92.39  E-value=0.44  Score=45.26  Aligned_cols=36  Identities=17%  Similarity=0.370  Sum_probs=30.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~   60 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRS   60 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            578899999976 6999999999999997 67787653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=92.38  E-value=0.45  Score=45.47  Aligned_cols=88  Identities=15%  Similarity=0.111  Sum_probs=53.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+.-....+.            .+.+.+.+.+.+..+  ++..+
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~------------~~~~~~~~~~~~~~~--~~~~~   70 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLP------------GTIYTAAKEIEEAGG--QALPI   70 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSC------------CCHHHHHHHHHHHTS--EEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhh------------HHHHHHHHHHHhcCC--cEEEE
Confidence            367889999986 7999999999999997 6888887654333321            123444455555544  44444


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +...+++.      ++.|++|.+.
T Consensus        71 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnA  101 (285)
T 3sc4_A           71 VGDIRDGDAVAAAVAKTVEQFGGIDICVNNA  101 (285)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCSEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            444432 22333322      2477777653

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=92.37  E-value=0.68  Score=43.61  Aligned_cols=36  Identities=17%  Similarity=0.314  Sum_probs=30.8

Q ss_pred             HhhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+++.++|-|++   |+|-.+|+.|++.|. ++.+.|.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~   41 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRK   41 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            4789999999984   899999999999997 58887653

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=92.36  E-value=0.42  Score=45.37  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=28.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r   60 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTAT   60 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            477788888876 7999999999999997 5777664

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.36  E-value=0.8  Score=43.18  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=50.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|+++.++|.|+ ||+|.++++.|++.|. ++.++|...                  ..+.+.+.+.+.+..+.  +..+
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~------------------~~~~~~~~~~~~~~~~~--~~~~   73 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANS------------------TKDAEKVVSEIKALGSD--AIAI   73 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCC------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            577888999976 6999999999999997 455544321                  12344555556555443  3334


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ...++. +...+++.      +..|++|.+..
T Consensus        74 ~~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg  105 (270)
T 3is3_A           74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSG  105 (270)
T ss_dssp             ECCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EcCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            333332 33333332      24788886543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=92.32  E-value=0.079  Score=51.21  Aligned_cols=35  Identities=20%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|+|+||+|..++..|++.|  +++++|.+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L~~~G--~V~v~~r~  159 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFELAKDN--NIIIANRT  159 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHTSSS--EEEEECSS
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCC--CEEEEECC
Confidence            367899999999999999999999999  89986543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=92.32  E-value=0.61  Score=44.14  Aligned_cols=97  Identities=13%  Similarity=0.072  Sum_probs=55.5

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      .+..|++++|+|.|+ ||+|.++++.|++.|.. +.++|.+.-...  .     ....-...+.+...+.+.+..+  ++
T Consensus         4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~--~~   73 (281)
T 3s55_A            4 SMADFEGKTALITGGARGMGRSHAVALAEAGAD-IAICDRCENSDV--V-----GYPLATADDLAETVALVEKTGR--RC   73 (281)
T ss_dssp             --CTTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEECCSCCTT--C-----SSCCCCHHHHHHHHHHHHHTTC--CE
T ss_pred             cccccCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCccccc--c-----ccccccHHHHHHHHHHHHhcCC--eE
Confidence            455788999999975 79999999999999975 888886521100  0     0001112344445555555544  34


Q ss_pred             EEEeccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          157 DAKVLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       157 ~~~~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ..+...++. +....++.      +..|++|.+..
T Consensus        74 ~~~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg  108 (281)
T 3s55_A           74 ISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAG  108 (281)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHTCCCEEEECCC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence            444444432 33333332      24888886643

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=92.32  E-value=0.13  Score=49.87  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=32.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~  189 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARS  189 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4788999999999999999999999997 78887764

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=92.30  E-value=0.53  Score=44.05  Aligned_cols=35  Identities=29%  Similarity=0.512  Sum_probs=29.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQ   40 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCC
Confidence            56788999976 8999999999999996 57776643

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=92.27  E-value=0.33  Score=45.09  Aligned_cols=90  Identities=18%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..+|+|||+|.+|..++.++... |+.=+.++|.|.-..   .+. .      +                .+.|..    
T Consensus        80 ~~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~---g~~-i------~----------------gv~V~~----  129 (211)
T 2dt5_A           80 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV---GRP-V------R----------------GGVIEH----  129 (211)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT---TCE-E------T----------------TEEEEE----
T ss_pred             CCEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHH---hhh-h------c----------------CCeeec----
Confidence            35899999999999999864332 555667778663211   110 0      0                122321    


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        .++..+++..+.|.|+-|+.+.. ...+.+.|.+.|++.|..
T Consensus       130 --~~dl~ell~~~ID~ViIA~Ps~~-~~ei~~~l~~aGi~~Iln  170 (211)
T 2dt5_A          130 --VDLLPQRVPGRIEIALLTVPREA-AQKAADLLVAAGIKGILN  170 (211)
T ss_dssp             --GGGHHHHSTTTCCEEEECSCHHH-HHHHHHHHHHHTCCEEEE
T ss_pred             --HHhHHHHHHcCCCEEEEeCCchh-HHHHHHHHHHcCCCEEEE
Confidence              23456666436999999998864 447888899999997764

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=92.27  E-value=0.086  Score=54.63  Aligned_cols=108  Identities=12%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCC--ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGV--GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGV--g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ++|++.||++.|+|..|..+++.|+..|+  ++|.++|..-+=..+  |.-+.... -...|.+.+    +..||.    
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~--R~~l~~~~-~~~~k~~~A----~~~n~~----  283 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNG--REDIKKDT-RFYRKWEIC----ETTNPS----  283 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTT--CHHHHHCG-GGHHHHHHH----HHSCTT----
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCC--cchhhhhc-ccHHHHHHH----Hhcccc----
Confidence            37899999999999999999999999999  899999987432221  21110000 011222222    223432    


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEcc--C-CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCI--D-NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~--D-n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                            ...++.+.+.+ .|++|.++  . +.=+...+-.++   ..|+|.++.
T Consensus       284 ------~~~~L~eav~~-adVlIG~S~~~pg~ft~e~V~~Ma---~~PIIFaLS  327 (487)
T 3nv9_A          284 ------KFGSIAEACVG-ADVLISLSTPGPGVVKAEWIKSMG---EKPIVFCCA  327 (487)
T ss_dssp             ------CCCSHHHHHTT-CSEEEECCCSSCCCCCHHHHHTSC---SSCEEEECC
T ss_pred             ------cCCCHHHHHhc-CCEEEEecccCCCCCCHHHHHhhc---CCCEEEECC
Confidence                  22356777776 89999888  2 344555555554   579999874

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=92.26  E-value=0.6  Score=43.71  Aligned_cols=35  Identities=23%  Similarity=0.649  Sum_probs=29.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        13 ~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r   48 (278)
T 2bgk_A           13 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADI   48 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcC
Confidence            467889999976 8999999999999996 5777654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=92.24  E-value=0.43  Score=49.37  Aligned_cols=90  Identities=21%  Similarity=0.290  Sum_probs=57.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHH--------cC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLR--------SG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP  152 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lar--------sG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP  152 (448)
                      +.-+|.|+|+|.+|+.++..|..        .|  +.=..+.|.+.                   .|+...   +    +
T Consensus         9 k~irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~-------------------~~~~~~---~----~   62 (444)
T 3mtj_A            9 KPIHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNL-------------------DKAEAL---A----G   62 (444)
T ss_dssp             SCEEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCH-------------------HHHHHH---H----T
T ss_pred             CcccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCH-------------------HHhhhh---c----c
Confidence            45689999999999999987763        23  33334444431                   122111   1    2


Q ss_pred             CceEEEEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          153 ECHIDAKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       153 ~v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ...+.        .+.++++. .+.|+|++|+.+......+...|.++|+.++..
T Consensus        63 ~~~~~--------~d~~ell~d~diDvVve~tp~~~~h~~~~~~AL~aGKhVvte  109 (444)
T 3mtj_A           63 GLPLT--------TNPFDVVDDPEIDIVVELIGGLEPARELVMQAIANGKHVVTA  109 (444)
T ss_dssp             TCCEE--------SCTHHHHTCTTCCEEEECCCSSTTHHHHHHHHHHTTCEEEEC
T ss_pred             cCccc--------CCHHHHhcCCCCCEEEEcCCCchHHHHHHHHHHHcCCEEEEC
Confidence            22211        23455654 358999999987677777778889999999974

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=92.24  E-value=0.51  Score=46.81  Aligned_cols=39  Identities=18%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .+|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+.-
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~   80 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQ   80 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCS
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChh
Confidence            4688999999986 7999999999999996 6888876643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=92.21  E-value=0.12  Score=51.61  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      +.+.||.|||+ |.||+.+|..|+..|. .++.|+|-+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            45689999998 9999999999999996 579988854

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=92.20  E-value=0.84  Score=43.06  Aligned_cols=95  Identities=20%  Similarity=0.183  Sum_probs=56.6

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ..|+++.|+|.|+ ||+|.++++.|++.|.. +.++|.+.-. .++...      .-...+.+.+.+.+.+..+  ++..
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~-V~~~~r~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~   78 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGAD-IIAVDLCDQI-ASVPYP------LATPEELAATVKLVEDIGS--RIVA   78 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCE-EEEEECCSCC-TTCSSC------CCCHHHHHHHHHHHHHHTC--CEEE
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeccccc-cccccc------ccchHHHHHHHHHHHhcCC--eEEE
Confidence            3578899999976 79999999999999965 7777754210 001000      0112345555666666655  4444


Q ss_pred             EeccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          159 KVLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      +...++. +....++.      +..|++|.+..
T Consensus        79 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg  111 (278)
T 3sx2_A           79 RQADVRDRESLSAALQAGLDELGRLDIVVANAG  111 (278)
T ss_dssp             EECCTTCHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_pred             EeCCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            4444433 33333332      34888887653

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=92.20  E-value=0.65  Score=43.90  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   54 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN   54 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67788999976 8999999999999996 57776654

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=92.19  E-value=0.31  Score=48.42  Aligned_cols=132  Identities=17%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +..+|.|||+|.+|...+..|... |+.-..++|.+                   ..|++.+    .+  ..+.  .   
T Consensus         4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~a----~~--~g~~--~---   53 (359)
T 3e18_A            4 KKYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDIL-------------------AEKREAA----AQ--KGLK--I---   53 (359)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSS-------------------HHHHHHH----HT--TTCC--B---
T ss_pred             CcCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCC-------------------HHHHHHH----Hh--cCCc--e---
Confidence            456899999999999999988876 33333344443                   1222211    11  1221  1   


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                       +  .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....-++|
T Consensus        54 -~--~~~~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p  129 (359)
T 3e18_A           54 -Y--ESYEAVLADEKVDAVLIATPN-DSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDE  129 (359)
T ss_dssp             -C--SCHHHHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCH
T ss_pred             -e--CCHHHHhcCCCCCEEEEcCCc-HHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCH
Confidence             1  24456664 248999988877 4455566677778888887432211000          0111222223344788


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       130 ~~~~~k~~i~~--g~iG~i~  147 (359)
T 3e18_A          130 DFLIIKEMFEQ--KTIGEMF  147 (359)
T ss_dssp             HHHHHHHHHHH--TTTSSEE
T ss_pred             HHHHHHHHHHc--CCCCCeE
Confidence            88888888875  5556554

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=92.17  E-value=0.38  Score=45.10  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~   39 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRT   39 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467888999876 8999999999999996 47776653

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=92.17  E-value=0.27  Score=46.00  Aligned_cols=91  Identities=21%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ++|+|.|+ |++|+++++.|+..| -+++++|.+.-.  .+.                          +.  ++.+...+
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~--~~~--------------------------~~--~~~~~~Dl   51 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLG--AAE--------------------------AH--EEIVACDL   51 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCC--CCC--------------------------TT--EEECCCCT
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCcc--ccC--------------------------CC--ccEEEccC
Confidence            47999998 999999999999998 467776654211  000                          11  23332333


Q ss_pred             -CccchHHHhcCCCCeEEEccC-------------CHHHHHHHHHHHHHcCC-cEEEEc
Q 013180          164 -DASSEEEILSGHPDFVLDCID-------------NIDTKVALLAACVRRGL-KVLCAT  207 (448)
Q Consensus       164 -~~~~~~~ll~~~~D~VIda~D-------------n~~~r~~l~~~c~~~~i-p~I~~~  207 (448)
                       +.+...+++.+ +|+||.+..             |...-..+.++|.+.+. .+|..+
T Consensus        52 ~d~~~~~~~~~~-~d~vi~~a~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~S  109 (267)
T 3ay3_A           52 ADAQAVHDLVKD-CDGIIHLGGVSVERPWNDILQANIIGAYNLYEAARNLGKPRIVFAS  109 (267)
T ss_dssp             TCHHHHHHHHTT-CSEEEECCSCCSCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCHHHHHHHHcC-CCEEEECCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC
Confidence             23345556665 899998753             22233567778887775 455544

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=92.16  E-value=0.26  Score=49.18  Aligned_cols=87  Identities=20%  Similarity=0.212  Sum_probs=52.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...-.             ..+                   ... 
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~-------------~~~-------------------~~~-  212 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGM-SVRYWNRSTLS-------------GVD-------------------WIA-  212 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCT-------------TSC-------------------CEE-
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCccc-------------ccC-------------------cee-
Confidence            46889999999999999999999999887 57776653211             000                   000 


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHH---HcCCcEEEE
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACV---RRGLKVLCA  206 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~---~~~ip~I~~  206 (448)
                           ..+.++++.. .|+|+.|+- +..++..+++-..   +.+.-+|+.
T Consensus       213 -----~~sl~ell~~-aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~  257 (340)
T 4dgs_A          213 -----HQSPVDLARD-SDVLAVCVAASAATQNIVDASLLQALGPEGIVVNV  257 (340)
T ss_dssp             -----CSSHHHHHHT-CSEEEECC----------CHHHHHHTTTTCEEEEC
T ss_pred             -----cCCHHHHHhc-CCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEEC
Confidence                 1346677775 999999886 5566666643222   234445554

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=92.14  E-value=0.24  Score=47.16  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=28.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r   58 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGT   58 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCS
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            467888999876 7999999999999997 5777543

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=92.14  E-value=0.52  Score=46.78  Aligned_cols=134  Identities=13%  Similarity=0.046  Sum_probs=74.3

Q ss_pred             hCCcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           83 SGSYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      +..+|.|||+|.+|.. .+..|... |+.-+.++|.|.-                   |++.    +.+..+.+++  + 
T Consensus         4 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~-------------------~~~~----~a~~~~~~~~--~-   57 (359)
T 3m2t_A            4 SLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLE-------------------RARR----VHRFISDIPV--L-   57 (359)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHH-------------------HHGG----GGGTSCSCCE--E-
T ss_pred             CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHH-------------------HHHH----HHHhcCCCcc--c-
Confidence            3468999999999985 78888776 4443446665421                   2211    1222222222  1 


Q ss_pred             ccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCC
Q 013180          161 LLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTND  229 (448)
Q Consensus       161 ~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~d  229 (448)
                           .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....-++
T Consensus        58 -----~~~~~ll~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~  131 (359)
T 3m2t_A           58 -----DNVPAMLNQVPLDAVVMAGPP-QLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFA  131 (359)
T ss_dssp             -----SSHHHHHHHSCCSEEEECSCH-HHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHC
T ss_pred             -----CCHHHHhcCCCCCEEEEcCCc-HHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCc
Confidence                 24456654 247999988876 4455666677888888887322211000          001112222223367


Q ss_pred             hhhHHHHHHHhhhcCccCCee
Q 013180          230 PLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       230 pl~~~~r~~l~~~~g~~g~i~  250 (448)
                      |..+.+|+.++.  |..|.+.
T Consensus       132 p~~~~~k~~i~~--g~iG~i~  150 (359)
T 3m2t_A          132 RPVRQLREMTQV--DEFGETL  150 (359)
T ss_dssp             HHHHHHHHHHTS--GGGCCEE
T ss_pred             HHHHHHHHHHHC--CCCCCeE
Confidence            888888877764  4445443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=92.13  E-value=0.093  Score=50.84  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..+|.|||+|.+|+.++.+|++.|. +++++|.+.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~   48 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRI   48 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTT-CEEEECSST
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCH
Confidence            4689999999999999999999996 688888664

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=92.13  E-value=0.13  Score=50.93  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|+|+|.+|+.+|..|+..|...++|+|-|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~   42 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVV   42 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            589999999999999999999998459999876

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.12  E-value=0.12  Score=50.62  Aligned_cols=32  Identities=31%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~  116 (448)
                      .||.|||+|+||+.+|..|+..|. ++|.|+|-
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di   33 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDI   33 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            379999999999999999998874 88999874

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=92.12  E-value=0.19  Score=48.03  Aligned_cols=30  Identities=37%  Similarity=0.428  Sum_probs=26.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      .+|.|||+|.+|+.++..|++.|. +++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~   33 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGH-QLHVTT   33 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTC-EEEECC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCC-EEEEEc
Confidence            479999999999999999999996 677776

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=92.12  E-value=0.082  Score=48.93  Aligned_cols=32  Identities=19%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEE-EeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLL-VDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~L-iD~  116 (448)
                      -.+|.|||+|.+|+.++..|++.|. ++++ +|.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~-~V~~v~~r   55 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQI-PAIIANSR   55 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTC-CEEEECTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            3689999999999999999999996 3554 443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=92.09  E-value=0.67  Score=47.99  Aligned_cols=98  Identities=15%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ..++|+|+|.|-+|..+|+.|-. + .++++|+.|                   +.|++.+++.|    |.+.|  +...
T Consensus       234 ~~~~v~I~GgG~ig~~lA~~L~~-~-~~v~iIE~d-------------------~~r~~~la~~l----~~~~V--i~GD  286 (461)
T 4g65_A          234 PYRRIMIVGGGNIGASLAKRLEQ-T-YSVKLIERN-------------------LQRAEKLSEEL----ENTIV--FCGD  286 (461)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHTT-T-SEEEEEESC-------------------HHHHHHHHHHC----TTSEE--EESC
T ss_pred             cccEEEEEcchHHHHHHHHHhhh-c-CceEEEecC-------------------HHHHHHHHHHC----CCceE--Eecc
Confidence            35789999999999999999854 3 578887766                   33555555444    54433  2232


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      . +.+.+.+---.++|++|.+|++-++-....-+|+++|.+-+-+-
T Consensus       287 ~td~~~L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~kvIa~  332 (461)
T 4g65_A          287 AADQELLTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAKKVMVL  332 (461)
T ss_dssp             TTCHHHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ccchhhHhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCcccccc
Confidence            2 22222222112599999999999999999999999999877654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.07  E-value=1.1  Score=44.11  Aligned_cols=101  Identities=12%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..++|+|.|+ |++|+++++.|+..|. ++++++.+.-                 ..++    +.+.. .+.  ++.+..
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~-----------------~~~~----~~l~~-~~~--v~~v~~   58 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLK-----------------GLIA----EELQA-IPN--VTLFQG   58 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSC-----------------SHHH----HHHHT-STT--EEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCC-----------------hhhH----HHHhh-cCC--cEEEEC
Confidence            3578999996 9999999999999984 5777654311                 0111    12221 123  333334


Q ss_pred             c-C-CccchHHHhcCCCCeEEEccCC------HHHHHHHHHHHHHcC-C-cEEEEcCCC
Q 013180          162 L-Y-DASSEEEILSGHPDFVLDCIDN------IDTKVALLAACVRRG-L-KVLCATGAG  210 (448)
Q Consensus       162 ~-~-~~~~~~~ll~~~~D~VIda~Dn------~~~r~~l~~~c~~~~-i-p~I~~~g~G  210 (448)
                      . + +.+...+.+.+ +|.||.+...      ... ..+.++|.+.+ + .+|..+..+
T Consensus        59 D~l~d~~~l~~~~~~-~d~Vi~~a~~~~~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           59 PLLNNVPLMDTLFEG-AHLAFINTTSQAGDEIAIG-KDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             CCTTCHHHHHHHHTT-CSEEEECCCSTTSCHHHHH-HHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CccCCHHHHHHHHhc-CCEEEEcCCCCCcHHHHHH-HHHHHHHHHcCCccEEEEeCCcc
Confidence            4 4 34446666765 9999976543      233 56778888887 5 577665543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=92.02  E-value=0.41  Score=47.73  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+|++|..++..+...|..++..+|.+
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  216 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQ  216 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            46899999999999999999999999888887643

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.01  E-value=0.15  Score=50.15  Aligned_cols=89  Identities=12%  Similarity=0.029  Sum_probs=59.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|.+|..+++.|...|.  ++++|.|.-                   +++ +++      ..+  .++....
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~--v~vid~~~~-------------------~~~-~~~------~~~--~~i~gd~  164 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV--FVLAEDENV-------------------RKK-VLR------SGA--NFVHGDP  164 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE--EEEESCGGG-------------------HHH-HHH------TTC--EEEESCT
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc--EEEEeCChh-------------------hhh-HHh------CCc--EEEEeCC
Confidence            5689999999999999999999987  888887631                   222 221      222  2333322


Q ss_pred             C-ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCc
Q 013180          164 D-ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLK  202 (448)
Q Consensus       164 ~-~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip  202 (448)
                      + ++...+.--.++|.||.++++.+....+...+++.+.+
T Consensus       165 ~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~ar~~~~~  204 (336)
T 1lnq_A          165 TRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDES  204 (336)
T ss_dssp             TSHHHHHHTCSTTEEEEEECCSSHHHHHHHHHHHHTTCTT
T ss_pred             CCHHHHHhcChhhccEEEEcCCccHHHHHHHHHHHHHCCC
Confidence            2 22233331235899999999888778888888887654

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=92.01  E-value=0.43  Score=44.86  Aligned_cols=32  Identities=25%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLL  112 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~  112 (448)
                      .+.+++|+|.|+ ||+|.++++.|++.|..-+.
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i   55 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGV   55 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence            466788888876 89999999999999976433

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.99  E-value=0.24  Score=49.55  Aligned_cols=96  Identities=14%  Similarity=0.176  Sum_probs=57.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHH-h-hhCCCce----EE
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHF-S-SIFPECH----ID  157 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l-~-~inP~v~----v~  157 (448)
                      ..+|.|||+|.+|+.+|..|++.|. +++++|.|.-.                   ++.+.+.- . ...|.++    +.
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~-~V~l~~r~~~~-------------------~~~i~~~~~~~~~l~g~~l~~~i~   88 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQ-KVRLWSYESDH-------------------VDEMQAEGVNNRYLPNYPFPETLK   88 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTC-CEEEECSCHHH-------------------HHHHHHHSSBTTTBTTCCCCTTEE
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHH-------------------HHHHHHcCCCcccCCCCccCCCeE
Confidence            4689999999999999999999995 58887765321                   22222110 0 0112221    11


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEE
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCA  206 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~  206 (448)
                      +.      .+..+.+.+ +|+||-|+-....+..+.+....  .+.++|+.
T Consensus        89 ~t------~d~~ea~~~-aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs~  132 (356)
T 3k96_A           89 AY------CDLKASLEG-VTDILIVVPSFAFHEVITRMKPLIDAKTRIAWG  132 (356)
T ss_dssp             EE------SCHHHHHTT-CCEEEECCCHHHHHHHHHHHGGGCCTTCEEEEC
T ss_pred             EE------CCHHHHHhc-CCEEEECCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11      233445554 99999999877666555554432  24556653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.99  E-value=0.46  Score=44.88  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=54.9

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +..|++++|+|.|+ ||+|.++|+.|++.|. ++.++|.+.-...+    ..   ..-...+.+.+...+....+  ++.
T Consensus         5 m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~--~~~   74 (287)
T 3pxx_A            5 MGRVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETN----EY---PLATSRDLEEAGLEVEKTGR--KAY   74 (287)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTS----CS---CCCCHHHHHHHHHHHHHTTS--CEE
T ss_pred             ccccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccccccccc----cc---chhhhHHHHHHHHHHHhcCC--ceE
Confidence            34678899999986 6999999999999996 48887765211111    00   00112344555556655544  444


Q ss_pred             EEeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          158 AKVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       158 ~~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      .+...++. +...+++.      +..|++|.+.
T Consensus        75 ~~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nA  107 (287)
T 3pxx_A           75 TAEVDVRDRAAVSRELANAVAEFGKLDVVVANA  107 (287)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEEccCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            44444432 33333322      2477777654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.99  E-value=0.42  Score=45.10  Aligned_cols=36  Identities=25%  Similarity=0.502  Sum_probs=30.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|++++|+|.|+ ||+|.++++.|++.|.. +.++|.+
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~-V~~~~r~   53 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGAR-LVLSGRD   53 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            477888999976 79999999999999974 7776653

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=91.98  E-value=0.24  Score=47.47  Aligned_cols=37  Identities=24%  Similarity=0.539  Sum_probs=30.2

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|+++.|+|.|+ ||+|.++++.|++.|.. +.++|.+
T Consensus         4 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~   41 (280)
T 3tox_A            4 SRLEGKIAIVTGASSGIGRAAALLFAREGAK-VVVTARN   41 (280)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCE-EEECCSC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEECC
Confidence            3577888999876 79999999999999974 7776544

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=91.98  E-value=0.29  Score=47.68  Aligned_cols=34  Identities=32%  Similarity=0.553  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .|.+++|+|||.|+ +|..+|..|.+.|. ++++++
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h  191 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCH  191 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEe
Confidence            47899999999998 79999999999997 488875

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=91.95  E-value=1  Score=46.84  Aligned_cols=33  Identities=24%  Similarity=0.240  Sum_probs=28.2

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++|+|.| .|.+|++++..|...|. +++.++.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~-~V~~l~R~  180 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH-EVIQLVRK  180 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            46899999 59999999999999996 67777654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=91.93  E-value=0.45  Score=45.45  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...++++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+
T Consensus        28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   66 (281)
T 4dry_A           28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRR   66 (281)
T ss_dssp             ------CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            34678899999975 7999999999999997 47776653

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=91.93  E-value=0.6  Score=44.48  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=25.6

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D  117 (448)
                      +|+|.|+ |++|+++++.|+.. |-.+++++|..
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   34 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIV   34 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESS
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCC
Confidence            5899985 99999999999998 33468877643

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=91.93  E-value=0.17  Score=49.71  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ...|+|||+|.+|+.+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~-~V~vle~~~~~   41 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCC-EEEEEeccCCC
Confidence            4689999999999999999999997 69999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=91.91  E-value=0.15  Score=49.29  Aligned_cols=32  Identities=34%  Similarity=0.418  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|.|||+|.+|+.+|..|+++|. +++++|.+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~-~V~~~d~~   47 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQT   47 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence            479999999999999999999996 68888865

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=91.90  E-value=0.45  Score=43.75  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=28.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~   40 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTS   40 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56788888865 8999999999999996 57776643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=91.89  E-value=0.15  Score=49.78  Aligned_cols=33  Identities=33%  Similarity=0.590  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++..|+..|. .+++++|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~   35 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence            479999999999999999999996 678888765

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=91.87  E-value=0.3  Score=47.62  Aligned_cols=95  Identities=20%  Similarity=0.260  Sum_probs=59.2

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      .+..|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+.-    +.|.     ..-...+.+.+.+.+.+..+  ++
T Consensus        21 ~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~----~~~~-----~~~~~~~~~~~~~~~~~~~~--~~   88 (322)
T 3qlj_A           21 SMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG----LDGS-----PASGGSAAQSVVDEITAAGG--EA   88 (322)
T ss_dssp             -CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBC----TTSS-----BTCTTSHHHHHHHHHHHTTC--EE
T ss_pred             hhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCccc----cccc-----ccccHHHHHHHHHHHHhcCC--cE
Confidence            345688889999976 7999999999999996 6888776531    1111     11223456666677766654  44


Q ss_pred             EEEeccCCc-cchHHHhc------CCCCeEEEccC
Q 013180          157 DAKVLLYDA-SSEEEILS------GHPDFVLDCID  184 (448)
Q Consensus       157 ~~~~~~~~~-~~~~~ll~------~~~D~VIda~D  184 (448)
                      ..+...++. +....++.      +..|++|.+..
T Consensus        89 ~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg  123 (322)
T 3qlj_A           89 VADGSNVADWDQAAGLIQTAVETFGGLDVLVNNAG  123 (322)
T ss_dssp             EEECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCC
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            444444433 33333332      25898887654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=91.84  E-value=0.39  Score=44.57  Aligned_cols=34  Identities=24%  Similarity=0.193  Sum_probs=27.5

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHH-cCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLR-SGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~Lar-sGVg~i~LiD~D  117 (448)
                      ++++|+|.|+ ||+|.++++.|+. .|. ++.++|.+
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~   38 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARD   38 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCC
Confidence            4567888865 8999999999999 896 67777654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=91.83  E-value=0.67  Score=43.73  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~   64 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDIN   64 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcC
Confidence            467889999975 7999999999999996 47777643

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=91.79  E-value=0.55  Score=48.15  Aligned_cols=88  Identities=18%  Similarity=0.211  Sum_probs=56.3

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .+++++|+|.|.|.||+.+++.|.. .|..-+.+.|.+         ..++.++-+-..+....+++-..+......+  
T Consensus       206 ~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~---------G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~--  274 (415)
T 2tmg_A          206 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSR---------GGIYNPEGFDVEELIRYKKEHGTVVTYPKGE--  274 (415)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS---------CEEECTTCCCHHHHHHHHHHSSCSTTCSSSE--
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCC---------CeEECCCCCCHHHHHHHHHhhCCcccCCCce--
Confidence            3788999999999999999999999 998888888876         2345444444444444444321111110111  


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                        .++   .++++.-++|+++.|.-
T Consensus       275 --~~~---~~eil~~~~DIliP~A~  294 (415)
T 2tmg_A          275 --RIT---NEELLELDVDILVPAAL  294 (415)
T ss_dssp             --EEC---HHHHTTCSCSEEEECSS
T ss_pred             --EcC---chhhhcCCCcEEEecCC
Confidence              111   23456556999999853

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=91.79  E-value=0.67  Score=45.61  Aligned_cols=32  Identities=22%  Similarity=0.278  Sum_probs=28.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |++|++++..|+..|. +++++|.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~-~V~~~~r~   61 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   61 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC-EEEEEecC
Confidence            68999998 9999999999999995 68887764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=91.78  E-value=0.62  Score=44.51  Aligned_cols=38  Identities=18%  Similarity=0.277  Sum_probs=29.0

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +-.+.++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (283)
T 3v8b_A           23 MMNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRT   61 (283)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             hcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            34577888999976 7999999999999997 57776643

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.75  E-value=0.18  Score=50.91  Aligned_cols=37  Identities=27%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ...|+|||+|..|..+|..|++.|..+++|+|.+..-
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPVP   42 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            4689999999999999999999998789999987663

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.74  E-value=0.24  Score=49.08  Aligned_cols=42  Identities=26%  Similarity=0.412  Sum_probs=34.9

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCC
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSS  123 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sN  123 (448)
                      .+.+++|+|||.|. ||..+|.+|...|. +++++|.+.+....
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~  216 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFT  216 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHh
Confidence            57899999999997 59999999999995 69998877554433

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=91.69  E-value=0.37  Score=48.62  Aligned_cols=111  Identities=10%  Similarity=0.090  Sum_probs=62.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC-------
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP-------  152 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP-------  152 (448)
                      ....++|+|.|+ |++|++++..|+..|. ++++++...-.                ....+.+.+.+....+       
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~----------------~~~~~~l~~~l~~~~~~~~~~~~  128 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH-RIYCFIRADNE----------------EIAWYKLMTNLNDYFSEETVEMM  128 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE-EEEEEEECSSH----------------HHHHHHHHHHHHHHSCHHHHHHH
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC-EEEEEECCCCh----------------HHHHHHHHHHHHHhccccccccc
Confidence            344568999996 9999999999987774 56664432110                0112223333333221       


Q ss_pred             CceEEEEeccCCc-cchHHHhcCCCCeEEEccCC--------------HHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          153 ECHIDAKVLLYDA-SSEEEILSGHPDFVLDCIDN--------------IDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       153 ~v~v~~~~~~~~~-~~~~~ll~~~~D~VIda~Dn--------------~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                      ..++..+...++. +... .+ .++|+||.|...              ...-..+.++|.+.+..+|..++.+
T Consensus       129 ~~~v~~v~~Dl~d~~~l~-~~-~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~  199 (427)
T 4f6c_A          129 LSNIEVIVGDFECMDDVV-LP-ENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTIS  199 (427)
T ss_dssp             HTTEEEEEECC---CCCC-CS-SCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGG
T ss_pred             cCceEEEeCCCCCcccCC-Cc-CCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchH
Confidence            1234444444433 3333 33 359999988642              2233467778887777777655443

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.69  E-value=0.17  Score=49.47  Aligned_cols=33  Identities=48%  Similarity=0.533  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .||.|||+|.+|+.++..|+..|. +++.|+|-|
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~   34 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRD   34 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            379999999999999999999984 579999876

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=91.68  E-value=0.33  Score=47.31  Aligned_cols=34  Identities=29%  Similarity=0.547  Sum_probs=30.3

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .|.+++|+|||.|+ +|..+|..|...|. ++++++
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~h  192 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCH  192 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            47899999999999 79999999999998 588864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.67  E-value=0.17  Score=51.06  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=32.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+..++|+|+|+|++|..+++.+...|. +++++|.+
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~  200 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGA-TVTVLDIN  200 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence            5889999999999999999999999998 78888754

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=91.66  E-value=1.3  Score=42.62  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=61.1

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++|+|.| .|++|+++++.|+..|- -+++++|...-.. +.  .                  .+.++.. -+++.+...
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-~~--~------------------~~~~~~~-~~~~~~~~D   62 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAG-NK--A------------------NLEAILG-DRVELVVGD   62 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTC-CG--G------------------GTGGGCS-SSEEEEECC
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCC-Ch--h------------------HHhhhcc-CCeEEEECC
Confidence            5799998 59999999999999942 3688877542110 00  0                  0111111 134444444


Q ss_pred             CC-ccchHHHhcCCCCeEEEccCCH-----------------HHHHHHHHHHHHcCCcEEEEcCC
Q 013180          163 YD-ASSEEEILSGHPDFVLDCIDNI-----------------DTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       163 ~~-~~~~~~ll~~~~D~VIda~Dn~-----------------~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                      ++ .+...+++.+ +|+||.|....                 ..-..+.++|.+.+..+|..++.
T Consensus        63 l~d~~~~~~~~~~-~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~  126 (348)
T 1oc2_A           63 IADAELVDKLAAK-ADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTD  126 (348)
T ss_dssp             TTCHHHHHHHHTT-CSEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEG
T ss_pred             CCCHHHHHHHhhc-CCEEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence            43 3445666765 89999886532                 11245668888877787776543

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=91.64  E-value=0.23  Score=49.41  Aligned_cols=35  Identities=37%  Similarity=0.500  Sum_probs=30.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~  225 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH  225 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            35789999999999999998888998888887643

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=91.64  E-value=0.6  Score=43.54  Aligned_cols=39  Identities=18%  Similarity=0.328  Sum_probs=31.4

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ....+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        13 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   52 (249)
T 1o5i_A           13 MELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   52 (249)
T ss_dssp             ---CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             HHhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            456788899999987 7999999999999996 58887765

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=91.62  E-value=0.68  Score=45.40  Aligned_cols=33  Identities=36%  Similarity=0.590  Sum_probs=29.4

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~  118 (448)
                      ||+|+|+ |.+|+.++..|+..|. .+|.|+|-|.
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            7999998 9999999999998874 6799999774

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=91.62  E-value=1.4  Score=43.05  Aligned_cols=132  Identities=17%  Similarity=0.184  Sum_probs=77.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCce---EEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGR---LLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~---i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .||.|||+|.+|...+..|...+-..   +.+.|.                   ...|++.++++..-  |  ++  +  
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~-------------------~~~~a~~~a~~~~~--~--~~--~--   55 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAAR-------------------DLSRAKEFAQKHDI--P--KA--Y--   55 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECS-------------------SHHHHHHHHHHHTC--S--CE--E--
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcC-------------------CHHHHHHHHHHcCC--C--cc--c--
Confidence            47999999999999999887654222   223332                   23455544444321  1  11  1  


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt~i~i~di~~~~~dp  230 (448)
                          .+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+...          .-..+.+..-...-+.|
T Consensus        56 ----~~~~~ll~~~~vD~V~i~tp~~-~H~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p  130 (334)
T 3ohs_X           56 ----GSYEELAKDPNVEVAYVGTQHP-QHKAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFP  130 (334)
T ss_dssp             ----SSHHHHHHCTTCCEEEECCCGG-GHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSH
T ss_pred             ----CCHHHHhcCCCCCEEEECCCcH-HHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCH
Confidence                24566665 3599999999764 55666777888999988743222110          01122222233345778


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       131 ~~~~~k~~i~~--g~iG~i~  148 (334)
T 3ohs_X          131 ASEALRSVLAQ--GTLGDLR  148 (334)
T ss_dssp             HHHHHHHHHHH--TTTCSEE
T ss_pred             HHHHHHHHHhc--CCCCCeE
Confidence            88888888865  4445443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=91.62  E-value=0.15  Score=50.33  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=30.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..+++.+...|.+++..+|.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~  200 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEP  200 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence            6789999999999999999999999878887664

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=91.60  E-value=0.3  Score=47.97  Aligned_cols=35  Identities=29%  Similarity=0.531  Sum_probs=31.3

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|.+++|+|||.|+ +|..+|.+|.+.|. ++++++.
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~  197 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHS  197 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeC
Confidence            47899999999999 79999999999998 5888764

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=91.59  E-value=0.29  Score=48.12  Aligned_cols=102  Identities=12%  Similarity=0.091  Sum_probs=58.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh--hCCCc-
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS--IFPEC-  154 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~--inP~v-  154 (448)
                      ..+|.|||+|.+|+.++..|+++|.      .+++++|.+.-.              .++.+++.+.+.-..  ..|.. 
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~--------------~~~~~~~~l~~~~~~~~~~~~~~   73 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDI--------------GGKKLTEIINTQHENVKYLPGHK   73 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBS--------------SSSBHHHHHHHHSCCTTTSTTCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhh--------------hhhHHHHHHHhcCcccccCCccc
Confidence            3589999999999999999999983      478888765320              013344444332110  11111 


Q ss_pred             ---eEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEE
Q 013180          155 ---HIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCA  206 (448)
Q Consensus       155 ---~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~  206 (448)
                         .+...      .+..+.+.+ +|+||-|+-....+..+.+....  .+..+|+.
T Consensus        74 ~~~~~~~~------~~~~~~~~~-aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~  123 (354)
T 1x0v_A           74 LPPNVVAV------PDVVQAAED-ADILIFVVPHQFIGKICDQLKGHLKANATGISL  123 (354)
T ss_dssp             CCTTEEEE------SSHHHHHTT-CSEEEECCCGGGHHHHHHHHTTCSCTTCEEEEC
T ss_pred             CccCeEEE------cCHHHHHcC-CCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence               12111      123344554 99999999876555555444321  24445553

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=91.59  E-value=0.22  Score=49.55  Aligned_cols=33  Identities=36%  Similarity=0.523  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+|+|+|+|++|..++..+...|..++..+|.
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~  228 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI  228 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            578999999999999999988999988888764

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=91.58  E-value=0.55  Score=44.66  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=28.0

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..+.++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~   61 (272)
T 4dyv_A           23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRR   61 (272)
T ss_dssp             -----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            45677888888876 7999999999999997 57787754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.57  E-value=0.61  Score=45.88  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=28.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..+++.+...|.. +..+|.
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~-Vi~~~~  200 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTAR  200 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCE-EEEEcC
Confidence            357899999999999999988889986 777653

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=91.56  E-value=1.5  Score=40.68  Aligned_cols=35  Identities=29%  Similarity=0.410  Sum_probs=30.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~   40 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQA   40 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCc
Confidence            56788999976 8999999999999996 58887765

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=91.55  E-value=0.57  Score=43.74  Aligned_cols=63  Identities=19%  Similarity=0.234  Sum_probs=43.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHH---cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLR---SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~Lar---sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      |+++.++|.|+ ||+|.++++.|++   .|. ++.++|.+.                   .+.+.+.+.+.+.+|..++.
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~-------------------~~~~~~~~~l~~~~~~~~~~   63 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSE-------------------SMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCH-------------------HHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCH-------------------HHHHHHHHHHHhhCCCCeEE
Confidence            56777888875 7999999999999   786 577766431                   34555666676666656666


Q ss_pred             EEeccCC
Q 013180          158 AKVLLYD  164 (448)
Q Consensus       158 ~~~~~~~  164 (448)
                      .+...++
T Consensus        64 ~~~~Dv~   70 (259)
T 1oaa_A           64 LAAADLG   70 (259)
T ss_dssp             EEECCTT
T ss_pred             EEecCCC
Confidence            5554443

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=91.50  E-value=0.32  Score=48.42  Aligned_cols=34  Identities=38%  Similarity=0.562  Sum_probs=29.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  224 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI  224 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999999999888888764

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=91.48  E-value=0.22  Score=48.97  Aligned_cols=131  Identities=20%  Similarity=0.195  Sum_probs=77.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .+|.|||+|.+|...+..|.+. |+.-+.++|.+                   ..|++.+++.+   .  ++  .+    
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~~~---g--~~--~~----   54 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPF-------------------IEGAQRLAEAN---G--AE--AV----   54 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHHTT---T--CE--EE----
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHHHc---C--Cc--ee----
Confidence            5899999999999999999986 43333354443                   22333333322   2  22  22    


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCCceEEcccccccCChhh
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPTRIRVADLRESTNDPLS  232 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt~i~i~di~~~~~dpl~  232 (448)
                        .+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+...          .-..+.+.--...-++|..
T Consensus        55 --~~~~~~l~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~  131 (344)
T 3euw_A           55 --ASPDEVFARDDIDGIVIGSPTS-THVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSF  131 (344)
T ss_dssp             --SSHHHHTTCSCCCEEEECSCGG-GHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHH
T ss_pred             --CCHHHHhcCCCCCEEEEeCCch-hhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHH
Confidence              24556665 2499999999774 44555667788999988743322100          0111222233334567888


Q ss_pred             HHHHHHHhhhcCccCCee
Q 013180          233 RAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       233 ~~~r~~l~~~~g~~g~i~  250 (448)
                      +.+|+.++.  |..|.+.
T Consensus       132 ~~~k~~i~~--g~iG~i~  147 (344)
T 3euw_A          132 AAINARVAN--QEIGNLE  147 (344)
T ss_dssp             HHHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHhc--CCCCceE
Confidence            888888865  5555544

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=91.46  E-value=1.2  Score=41.00  Aligned_cols=37  Identities=22%  Similarity=0.489  Sum_probs=30.5

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~   47 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSN   47 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCC
Confidence            3567889999975 7999999999999995 57777653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=91.46  E-value=0.26  Score=47.82  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             hhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      |.+++|+|||.|+ +|..+|.+|.+.|. ++++++
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~  181 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCH  181 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEe
Confidence            8999999999997 89999999999997 588875

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=91.45  E-value=0.14  Score=50.40  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..+|.|||+|.+|+.++..|+++|. +++++|.
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~-~V~~~~r   34 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGE-AINVLAR   34 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTC-CEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            4689999999999999999999996 6888764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=91.43  E-value=0.79  Score=43.45  Aligned_cols=82  Identities=18%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|.. +.++|...                  ..+.+.+.+.+.+..+.  +..+
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~-V~~~~~~~------------------~~~~~~~~~~l~~~~~~--~~~~   86 (271)
T 3v2g_A           28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAA-VALTYVNA------------------AERAQAVVSEIEQAGGR--AVAI   86 (271)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESSC------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeCCC------------------HHHHHHHHHHHHhcCCc--EEEE
Confidence            477889999986 79999999999999975 66654321                  13455556666655443  3334


Q ss_pred             eccCC-ccchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYD-ASSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~-~~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++ .+....++.      +..|++|.+.
T Consensus        87 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA  117 (271)
T 3v2g_A           87 RADNRDAEAIEQAIRETVEALGGLDILVNSA  117 (271)
T ss_dssp             ECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence            33333 232333322      2477777654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=91.38  E-value=0.74  Score=44.11  Aligned_cols=37  Identities=22%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~   80 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLD   80 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4678899999976 8999999999999996 47776654

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=91.38  E-value=0.19  Score=50.16  Aligned_cols=38  Identities=26%  Similarity=0.190  Sum_probs=31.3

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.-+..+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus        19 ~~~~~~dV~IVGaG~aGl~~A~~La~~G~-~V~v~E~~~   56 (407)
T 3rp8_A           19 YFQGHMKAIVIGAGIGGLSAAVALKQSGI-DCDVYEAVK   56 (407)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            33456789999999999999999999998 599999774

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=91.37  E-value=0.78  Score=43.15  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=27.0

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.++++++|+|.|+ ||+|.++++.|++.|. ++.++|.
T Consensus         6 ~~~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r   43 (276)
T 1mxh_A            6 HEASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYR   43 (276)
T ss_dssp             -----CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence            34567788888865 7999999999999996 5777664

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=91.34  E-value=0.51  Score=44.85  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      -.|++++|+|.|+ ||+|.++|+.|++.|. ++.++|
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~   62 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWG   62 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEc
Confidence            3578899999976 7999999999999997 577766

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=91.34  E-value=0.47  Score=40.92  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=28.4

Q ss_pred             hCCcEEEEcC----ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL----GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~----GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +..+|+|||+    |..|..++.+|...|.. +.-+++.
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~-v~~vnp~   49 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYR-VLPVNPR   49 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCE-EEEECGG
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCE-EEEeCCC
Confidence            5789999999    78999999999999984 5555554

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=91.34  E-value=0.76  Score=42.65  Aligned_cols=31  Identities=16%  Similarity=0.253  Sum_probs=25.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|+|.|+ |++|+++++.|+ .| .++.++|.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~   33 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ER-HEVIKVYNSS   33 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TT-SCEEEEESSS
T ss_pred             EEEEECCCChhHHHHHHHHh-cC-CeEEEecCCC
Confidence            6999985 999999999999 48 6788877653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.33  E-value=0.19  Score=50.37  Aligned_cols=36  Identities=33%  Similarity=0.572  Sum_probs=32.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++.++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~  198 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGA-QVTILDVN  198 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECC
Confidence            5788999999999999999999999998 78887754

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=91.28  E-value=0.45  Score=44.64  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=31.3

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   41 (255)
T 4eso_A            4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRN   41 (255)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3578899999976 7999999999999997 58887754

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=91.22  E-value=0.82  Score=41.84  Aligned_cols=33  Identities=30%  Similarity=0.369  Sum_probs=26.8

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~-V~~~~r~   35 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYA-LALGARS   35 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCC
Confidence            467888876 79999999999999975 7776643

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.18  E-value=0.2  Score=47.38  Aligned_cols=32  Identities=19%  Similarity=0.153  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|.|||+|.+|+.++..|+++|. +++++|.+.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~   33 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVP   33 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-CEEEEEcCc
Confidence            69999999999999999999996 799998764

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.15  E-value=0.24  Score=49.03  Aligned_cols=93  Identities=16%  Similarity=0.148  Sum_probs=58.0

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..|+..+|.|||+|.+|+.++..|..+|+ ++.+.|.+.-                   +..   +...+.  .+++  .
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~-------------------~~~---~~a~~~--G~~~--~   64 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGS-------------------ATV---AKAEAH--GLKV--A   64 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTC-------------------HHH---HHHHHT--TCEE--E
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChH-------------------HHH---HHHHHC--CCEE--c
Confidence            45778899999999999999999999996 5777665421                   100   111111  1221  1


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHH-HHHH--HcCCcEEEEc
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALL-AACV--RRGLKVLCAT  207 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~-~~c~--~~~ip~I~~~  207 (448)
                             +..+.+.. +|+||.|+-....+..+. +...  +.+..+++.+
T Consensus        65 -------~~~e~~~~-aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           65 -------DVKTAVAA-ADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAH  107 (338)
T ss_dssp             -------CHHHHHHT-CSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEESC
T ss_pred             -------cHHHHHhc-CCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEcC
Confidence                   23345554 999999998777655554 3322  2345566543

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=91.12  E-value=0.51  Score=40.95  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=28.7

Q ss_pred             CCcEEEEcC----ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGL----GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~----GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..+|.|||+    |..|..++.+|...|.. +..+|+..
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~-v~~vnp~~   50 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYH-VIPVSPKV   50 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCC-EEEECSSS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCE-EEEeCCcc
Confidence            788999999    78999999999999984 66666543

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=91.12  E-value=0.71  Score=42.38  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=27.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~   36 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNG   36 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence            56788999976 7999999999999996 577763

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=91.08  E-value=0.29  Score=48.66  Aligned_cols=34  Identities=38%  Similarity=0.561  Sum_probs=29.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~  225 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL  225 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3578999999999999999988999888888764

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.07  E-value=0.92  Score=42.98  Aligned_cols=35  Identities=23%  Similarity=0.389  Sum_probs=29.0

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   55 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG   55 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            67788999975 7999999999999996 57776643

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=91.07  E-value=0.2  Score=48.90  Aligned_cols=33  Identities=30%  Similarity=0.501  Sum_probs=29.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+|+|+|+|++|+.++..|+++|. +++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh
Confidence            689999999999999999999995 788887764

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=91.01  E-value=0.82  Score=44.61  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   34 (372)
T 1db3_A            2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRR   34 (372)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC-
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence            57999985 9999999999999995 68887654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=91.00  E-value=0.23  Score=48.40  Aligned_cols=131  Identities=17%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             CcEEEEcCChHHH-HHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGS-HAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs-~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .+|.|||+|.+|. ..+..|....--++.++|.+                   ..|++.+++...     +.  .  ...
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~-------------------~~~~~~~a~~~g-----~~--~--~~~   54 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRN-------------------PKVLGTLATRYR-----VS--A--TCT   54 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSC-------------------HHHHHHHHHHTT-----CC--C--CCS
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCC-------------------HHHHHHHHHHcC-----CC--c--ccc
Confidence            4799999999998 48888876531233355543                   223433333321     11  0  001


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCCceEEcccccccCChhhH
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPTRIRVADLRESTNDPLSR  233 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt~i~i~di~~~~~dpl~~  233 (448)
                      +  ..+ .+..++|+|+.|+.+.. ...+...|.+.|++++.---.+...          .-..+.+..-...-++|..+
T Consensus        55 ~--~~~-~l~~~~D~V~i~tp~~~-h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~  130 (323)
T 1xea_A           55 D--YRD-VLQYGVDAVMIHAATDV-HSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYN  130 (323)
T ss_dssp             S--TTG-GGGGCCSEEEECSCGGG-HHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHH
T ss_pred             C--HHH-HhhcCCCEEEEECCchh-HHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHH
Confidence            1  111 22234899998887543 3444445667788877632111100          00112222223344677777


Q ss_pred             HHHHHHhhhcCccCCe
Q 013180          234 AVMHRLRKDYGIEGGI  249 (448)
Q Consensus       234 ~~r~~l~~~~g~~g~i  249 (448)
                      .+|+.++.  |..|.+
T Consensus       131 ~~~~~i~~--g~iG~i  144 (323)
T 1xea_A          131 QHLSELAQ--QECGAL  144 (323)
T ss_dssp             HHCHHHHH--TSCTTC
T ss_pred             HHHHHHhc--CCcCCc
Confidence            77777765  444443

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=90.98  E-value=0.38  Score=46.86  Aligned_cols=34  Identities=29%  Similarity=0.408  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .|++++|+|||.|+ +|..+|..|.+.|. ++++++
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~h  192 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTH  192 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEe
Confidence            47899999999998 89999999999997 588864

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=90.98  E-value=0.46  Score=47.64  Aligned_cols=94  Identities=15%  Similarity=0.232  Sum_probs=62.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .+|.|||+ |-+|.++++.|..--.-+|+.+               ......|++        +.+..|+..   ....+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l---------------~S~~~aG~~--------~~~~~p~~~---~~l~~   67 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYL---------------SSRTYAGKK--------LEEIFPSTL---ENSIL   67 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEE---------------ECSTTTTSB--------HHHHCGGGC---CCCBC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEE---------------eCcccccCC--------hHHhChhhc---cCceE
Confidence            57999986 8899999999998765555553               333455643        444455543   11122


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .+.+.+++..+ +|+||.|+.+-.++...-.+   .|..+|+.++
T Consensus        68 ~~~~~~~~~~~-~Dvvf~alp~~~s~~~~~~~---~g~~VIDlSs  108 (351)
T 1vkn_A           68 SEFDPEKVSKN-CDVLFTALPAGASYDLVREL---KGVKIIDLGA  108 (351)
T ss_dssp             BCCCHHHHHHH-CSEEEECCSTTHHHHHHTTC---CSCEEEESSS
T ss_pred             EeCCHHHhhcC-CCEEEECCCcHHHHHHHHHh---CCCEEEECCh
Confidence            22223344444 99999999998887776666   7899999654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=90.96  E-value=0.74  Score=43.33  Aligned_cols=41  Identities=15%  Similarity=0.183  Sum_probs=33.7

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      +-++++++|+|.|+ ||+|.++++.|++.|. ++.++|.+.-.
T Consensus        23 m~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~   64 (260)
T 3un1_A           23 MMRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKP   64 (260)
T ss_dssp             HHHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCC
T ss_pred             hhCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhh
Confidence            45688899999976 7999999999999996 58888876433

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=90.96  E-value=0.22  Score=47.67  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++..|+++|. +++++|.+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~   35 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQW   35 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECC
Confidence            489999999999999999999996 68887654

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=90.95  E-value=0.22  Score=49.20  Aligned_cols=33  Identities=24%  Similarity=0.570  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||.|||+|.+|+.++..|+..|...+.|+|-|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~   37 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIV   37 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            589999999999999999999998459998865

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=90.94  E-value=0.24  Score=43.39  Aligned_cols=33  Identities=36%  Similarity=0.534  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+|+|||.|.+|.++|..|++.|. +++|+|...
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~-~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGL-KVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            379999999999999999999997 699999764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=90.93  E-value=0.86  Score=44.25  Aligned_cols=95  Identities=16%  Similarity=0.225  Sum_probs=54.8

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +.+|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+.-. .++...      .-...+.+.+.+.+.+...  ++.
T Consensus        41 m~~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~  110 (317)
T 3oec_A           41 MNRLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQ-PNLDYA------QGSPEELKETVRLVEEQGR--RII  110 (317)
T ss_dssp             -CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCC-TTCCSC------CCCHHHHHHHHHHHHHTTC--CEE
T ss_pred             hhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEeccccc-cccccc------ccCHHHHHHHHHHHHhcCC--eEE
Confidence            45688889999876 7999999999999997 57777754211 111110      0012344444555555444  444


Q ss_pred             EEeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          158 AKVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       158 ~~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      .+...++. +....++.      +..|++|.+.
T Consensus       111 ~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnA  143 (317)
T 3oec_A          111 ARQADVRDLASLQAVVDEALAEFGHIDILVSNV  143 (317)
T ss_dssp             EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            44444433 33333332      2488888764

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.90  E-value=0.21  Score=52.30  Aligned_cols=35  Identities=37%  Similarity=0.697  Sum_probs=31.9

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |.+++|+|+|+|++|..+|+.|+..|. ++.++|.+
T Consensus       263 L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~  297 (488)
T 3ond_A          263 IAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEID  297 (488)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence            788999999999999999999999998 78887764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=90.90  E-value=0.34  Score=48.08  Aligned_cols=134  Identities=15%  Similarity=0.186  Sum_probs=79.7

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHH-Hc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLL-RS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~La-rs-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++..||.|||+|.+|...+..|. .. |+.-+.++|.|                   ..|++.+++.+.   ..+  ..+
T Consensus        21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~-------------------~~~~~~~a~~~g---~~~--~~~   76 (357)
T 3ec7_A           21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIV-------------------AGRAQAALDKYA---IEA--KDY   76 (357)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSS-------------------TTHHHHHHHHHT---CCC--EEE
T ss_pred             CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCC-------------------HHHHHHHHHHhC---CCC--eee
Confidence            34568999999999999999998 43 44433455543                   334544444432   111  111


Q ss_pred             eccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC------------CCce-EEccccc
Q 013180          160 VLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD------------PTRI-RVADLRE  225 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d------------pt~i-~i~di~~  225 (448)
                            .+.++++.. ++|+|+.|+.+ .....+...|.+.|++++.---.+....            ...+ .++  ..
T Consensus        77 ------~~~~~ll~~~~~D~V~i~tp~-~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~--~~  147 (357)
T 3ec7_A           77 ------NDYHDLINDKDVEVVIITASN-EAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIG--FM  147 (357)
T ss_dssp             ------SSHHHHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEE--CG
T ss_pred             ------CCHHHHhcCCCCCEEEEcCCc-HHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEe--ec
Confidence                  245566653 58999999976 4455666777888998887433221100            1112 222  23


Q ss_pred             ccCChhhHHHHHHHhhhcCccCCee
Q 013180          226 STNDPLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       226 ~~~dpl~~~~r~~l~~~~g~~g~i~  250 (448)
                      .-++|..+.+|+.++.  |..|.+.
T Consensus       148 ~R~~p~~~~~k~~i~~--g~iG~i~  170 (357)
T 3ec7_A          148 RRYDKGYVQLKNIIDS--GEIGQPL  170 (357)
T ss_dssp             GGGSHHHHHHHHHHHH--TTTCSEE
T ss_pred             ccCCHHHHHHHHHHhc--CCCCCeE
Confidence            3468888889888865  5556544

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.87  E-value=0.18  Score=50.23  Aligned_cols=35  Identities=29%  Similarity=0.311  Sum_probs=29.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..++..+...|..++..+|.+
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~  224 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV  224 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            35789999999999999998888998888887643

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=90.84  E-value=2.6  Score=40.41  Aligned_cols=104  Identities=24%  Similarity=0.268  Sum_probs=58.8

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +++|+|.| +|.+|+++++.|+..|. ++++++.+.   +++.             +...+ ..+. ..+  +++.+...
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~-~V~~~~r~~---~~~~-------------~~~~~-~~~~-~~~--~~~~~~~D   67 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY-AVNTTVRDP---DNQK-------------KVSHL-LELQ-ELG--DLKIFRAD   67 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC-EEEEEESCT---TCTT-------------TTHHH-HHHG-GGS--CEEEEECC
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcCc---chhh-------------hHHHH-HhcC-CCC--cEEEEecC
Confidence            57899998 69999999999999995 455544321   1111             01111 1111 112  24444333


Q ss_pred             C-CccchHHHhcCCCCeEEEccCC----------------HHHHHHHHHHHHHcC--CcEEEEcCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDN----------------IDTKVALLAACVRRG--LKVLCATGA  209 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn----------------~~~r~~l~~~c~~~~--ip~I~~~g~  209 (448)
                      + +.+...+.+.+ +|+||.+...                ...-..+.++|.+.+  ..+|..++.
T Consensus        68 l~d~~~~~~~~~~-~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~  132 (338)
T 2rh8_A           68 LTDELSFEAPIAG-CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSA  132 (338)
T ss_dssp             TTTSSSSHHHHTT-CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCH
T ss_pred             CCChHHHHHHHcC-CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecH
Confidence            3 34455666765 8999975421                111235667888875  457765543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=90.84  E-value=0.25  Score=48.85  Aligned_cols=132  Identities=11%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc--CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS--GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars--GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..||.|||+|.+|...+..|...  |+.-+.++|.+                   ..|++.++++..     +  ..+  
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~-------------------~~~~~~~~~~~~-----~--~~~--   64 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDID-------------------PAALKAAVERTG-----A--RGH--   64 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSS-------------------HHHHHHHHHHHC-----C--EEE--
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCC-------------------HHHHHHHHHHcC-----C--cee--
Confidence            45899999999999999999987  44444465543                   234444444431     2  222  


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                          .+.++++. .++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+.-....-++|
T Consensus        65 ----~~~~~ll~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p  139 (354)
T 3q2i_A           65 ----ASLTDMLAQTDADIVILTTPSG-LHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNA  139 (354)
T ss_dssp             ----SCHHHHHHHCCCSEEEECSCGG-GHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSH
T ss_pred             ----CCHHHHhcCCCCCEEEECCCcH-HHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCH
Confidence                23456654 3599999999875 345555667788998887432221000          0112222223344778


Q ss_pred             hhHHHHHHHhhhcCccCCee
Q 013180          231 LSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l~~~~r~~l~~~~g~~g~i~  250 (448)
                      ..+.+|+.++.  |..|.+.
T Consensus       140 ~~~~~k~~i~~--g~iG~i~  157 (354)
T 3q2i_A          140 TLQLLKRAMQE--KRFGRIY  157 (354)
T ss_dssp             HHHHHHHHHHT--TTTCSEE
T ss_pred             HHHHHHHHHhc--CCCCceE
Confidence            88888888865  5555543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=90.78  E-value=0.89  Score=43.22  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=28.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~   56 (288)
T 2x9g_A           20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHN   56 (288)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            367788888875 7999999999999996 57776643

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=90.77  E-value=0.49  Score=48.92  Aligned_cols=37  Identities=24%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus       232 ~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~  268 (450)
T 4fcc_A          232 GFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSS  268 (450)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCC
Confidence            3789999999999999999999999998877776654

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=90.73  E-value=0.26  Score=45.38  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~-~V~~~~r~   60 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGF-KVVVGSRN   60 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3689999999999999999999996 57787654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=90.71  E-value=0.94  Score=44.40  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=28.3

Q ss_pred             CCcEEEEcCChHHHH-HHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSH-AAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~-va~~LarsGVg~i~LiD~D  117 (448)
                      -++|.|||.||.|-. +|..|.+.|. ++++.|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~-~V~~~D~~   37 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGF-EVSGCDAK   37 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCC-EEEEEcCC
Confidence            368999999999996 8999999996 48888864

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=90.71  E-value=0.38  Score=45.75  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=32.4

Q ss_pred             HHHHHhhCCcEEEEcC---ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           77 ESQQKVSGSYVVVIGL---GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        77 ~~q~kL~~~~VlVVG~---GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..+..++++.|+|.|+   +|+|.++|+.|++.|. ++.++|.+.
T Consensus        19 ~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~   62 (280)
T 3nrc_A           19 SHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ   62 (280)
T ss_dssp             ---CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT
T ss_pred             CcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch
Confidence            4466788999999995   3599999999999997 588887754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=90.71  E-value=0.18  Score=48.63  Aligned_cols=32  Identities=31%  Similarity=0.303  Sum_probs=29.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|+|||+|++|+.++..|+++|. +++++|.+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~-~V~~~~r~   34 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLP-HTTLIGRH   34 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCT-TCEEEESS
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEec
Confidence            689999999999999999999995 79998876

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=90.69  E-value=0.15  Score=49.32  Aligned_cols=124  Identities=10%  Similarity=0.089  Sum_probs=71.6

Q ss_pred             hhCCcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++..||.|||+|.+|.. .+..|... |+.-+.++|.|                   ..|++.+++...     +.    
T Consensus         4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~a~~~~-----~~----   55 (308)
T 3uuw_A            4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPN-------------------KVKREKICSDYR-----IM----   55 (308)
T ss_dssp             -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSC-------------------HHHHHHHHHHHT-----CC----
T ss_pred             cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCC-------------------HHHHHHHHHHcC-----CC----
Confidence            44578999999999996 88888764 44433355543                   234444444331     11    


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTND  229 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~d  229 (448)
                        .  ..+.++++. ++|+|+.|+.+.. ...+...|.+.|++++.---.+....          -..+.+.--...-++
T Consensus        56 --~--~~~~~~ll~-~~D~V~i~tp~~~-h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~  129 (308)
T 3uuw_A           56 --P--FDSIESLAK-KCDCIFLHSSTET-HYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFC  129 (308)
T ss_dssp             --B--CSCHHHHHT-TCSEEEECCCGGG-HHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGC
T ss_pred             --C--cCCHHHHHh-cCCEEEEeCCcHh-HHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccC
Confidence              0  134566776 5999999988754 34455567788898886322221000          011222223334477


Q ss_pred             hhhHHHHHHH
Q 013180          230 PLSRAVMHRL  239 (448)
Q Consensus       230 pl~~~~r~~l  239 (448)
                      |..+.+|+.+
T Consensus       130 p~~~~~~~~i  139 (308)
T 3uuw_A          130 PMYKEIKNNA  139 (308)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHc
Confidence            8888777754

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=90.68  E-value=0.34  Score=48.06  Aligned_cols=34  Identities=38%  Similarity=0.552  Sum_probs=29.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~  223 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI  223 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            3578999999999999999998999888888764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=90.65  E-value=0.19  Score=50.11  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=32.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ....+|+|||+|-.|..+|..|++.|+ +++|+|.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~-~v~v~E~~~   59 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGI-DVSVYERDN   59 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEECSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            456789999999999999999999997 699999764

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=90.63  E-value=0.82  Score=44.79  Aligned_cols=132  Identities=19%  Similarity=0.234  Sum_probs=78.1

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHcC-CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGSH-AAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~-va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      -||.|||||.+|.. .+..|.... +.=..+.|.|                   ..|++.+++++.-  |  +  ++   
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~-------------------~~~a~~~a~~~g~--~--~--~y---   75 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRD-------------------LTRAREMADRFSV--P--H--AF---   75 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSS-------------------HHHHHHHHHHHTC--S--E--EE---
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCC-------------------HHHHHHHHHHcCC--C--e--ee---
Confidence            48999999999964 577777653 3322344433                   3355555554421  1  1  11   


Q ss_pred             CCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChh
Q 013180          163 YDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPL  231 (448)
Q Consensus       163 ~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl  231 (448)
                         .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....-++|.
T Consensus        76 ---~d~~ell~~~~iDaV~I~tP~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~  151 (350)
T 4had_A           76 ---GSYEEMLASDVIDAVYIPLPT-SQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPV  151 (350)
T ss_dssp             ---SSHHHHHHCSSCSEEEECSCG-GGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHH
T ss_pred             ---CCHHHHhcCCCCCEEEEeCCC-chhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHH
Confidence               24566664 359999999987 5566777788889999988322221100          01112222233447888


Q ss_pred             hHHHHHHHhhhcCccCCee
Q 013180          232 SRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       232 ~~~~r~~l~~~~g~~g~i~  250 (448)
                      .+.+|+.++.  |..|.+.
T Consensus       152 ~~~~k~~i~~--G~iG~i~  168 (350)
T 4had_A          152 WQKVRSLIDE--GAIGSLR  168 (350)
T ss_dssp             HHHHHHHHHT--TTTSSEE
T ss_pred             HHHhhHhhhc--CCCCcce
Confidence            8889888865  5555443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=90.60  E-value=0.19  Score=48.87  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+|+|+|+|++|+.++..|+++|. +++++|.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGE-DVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSC-CEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-eEEEEEcCc
Confidence            589999999999999999999995 688877653

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=90.59  E-value=0.7  Score=39.94  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=26.6

Q ss_pred             CCcEEEEcC----ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGL----GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~----GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..+|+|||+    |.+|..++.+|.+.|. ++.-+++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~-~v~~Vnp   57 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY-DVYPVNP   57 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC-EEEEECT
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC-EEEEECC
Confidence            689999999    6899999999999998 3544444

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=90.53  E-value=0.57  Score=44.47  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=27.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D  117 (448)
                      +++|+|.|+ |++|+++++.|+.. |--+++++|.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~   37 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIR   37 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            468999998 99999999999998 32468777654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=90.53  E-value=0.26  Score=48.50  Aligned_cols=36  Identities=31%  Similarity=0.360  Sum_probs=32.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ...|+|||+|-+|+.+|..|++.|.. ++|+|.+.+.
T Consensus         5 ~~dVvIIGgGi~Gl~~A~~La~~G~~-V~lle~~~~~   40 (382)
T 1y56_B            5 KSEIVVIGGGIVGVTIAHELAKRGEE-VTVIEKRFIG   40 (382)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSSTT
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCe-EEEEeCCCCC
Confidence            46899999999999999999999974 9999987554

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=90.52  E-value=1.1  Score=48.16  Aligned_cols=103  Identities=18%  Similarity=0.291  Sum_probs=62.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      .++.++|+|.|+ |++|+++++.|+.. |. +++++|.+.-   ++.+  +.                  . .+  +++.
T Consensus       312 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~g~-~V~~~~r~~~---~~~~--~~------------------~-~~--~v~~  364 (660)
T 1z7e_A          312 ARRRTRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSD---AISR--FL------------------N-HP--HFHF  364 (660)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHHHSSSE-EEEEEESCCT---TTGG--GT------------------T-CT--TEEE
T ss_pred             hccCceEEEEcCCcHHHHHHHHHHHhcCCC-EEEEEEcCch---hhhh--hc------------------c-CC--ceEE
Confidence            356788999985 99999999999998 64 6888776421   1111  00                  0 12  2344


Q ss_pred             EeccCCc-cc-hHHHhcCCCCeEEEccCC-----------------HHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          159 KVLLYDA-SS-EEEILSGHPDFVLDCIDN-----------------IDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       159 ~~~~~~~-~~-~~~ll~~~~D~VIda~Dn-----------------~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +...++. +. ....+.+ +|+||.|...                 ...-..+.++|.+.+..+|..++.+.
T Consensus       365 v~~Dl~d~~~~~~~~~~~-~D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~v  435 (660)
T 1z7e_A          365 VEGDISIHSEWIEYHVKK-CDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEV  435 (660)
T ss_dssp             EECCTTTCHHHHHHHHHH-CSEEEECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             EECCCCCcHHHHHHhhcC-CCEEEECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHH
Confidence            4444443 22 3445554 8999986431                 11224567888888888888665543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=90.50  E-value=1.3  Score=40.99  Aligned_cols=34  Identities=21%  Similarity=0.322  Sum_probs=27.4

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~   36 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRR   36 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3567888876 7999999999999997 47776653

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=90.49  E-value=1.1  Score=41.28  Aligned_cols=33  Identities=27%  Similarity=0.420  Sum_probs=27.2

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~   35 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLS   35 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467888875 8999999999999995 58877643

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=90.48  E-value=0.56  Score=48.18  Aligned_cols=93  Identities=16%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|+.++|+|.|.|.||+.+++.|...|..-+.+.|.+.-    -.+..++.++-+-..+...+++.-..+.....    .
T Consensus       209 ~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~----~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~----a  280 (421)
T 2yfq_A          209 KMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRN----EGNYALYNENGIDFKELLAYKEANKTLIGFPG----A  280 (421)
T ss_dssp             CGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSS----SCSBCCBCSSCCCHHHHHHHHHHHCC-----------
T ss_pred             CccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCC----ccceEEECCCCCCHHHHHHHHHhcCCcccCCC----c
Confidence            478899999999999999999999999887778887631    12344555554444444444432111110000    0


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      +.++.   ++++.-++|+++-|.-
T Consensus       281 ~~i~~---~~~~~~~~DIliP~A~  301 (421)
T 2yfq_A          281 ERITD---EEFWTKEYDIIVPAAL  301 (421)
T ss_dssp             -----------------CEEECSC
T ss_pred             eEeCc---cchhcCCccEEEEcCC
Confidence            11221   2334445999998864

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=90.47  E-value=0.47  Score=45.40  Aligned_cols=107  Identities=13%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ...||.++|+|.+|..+++.  + +..-..++| +.+.  .|  .... ..|+-.         +.+ .|++-|++-...
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k~g--el--gv~a-~~d~d~---------lla-~pD~VVe~A~~~   71 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RISK--DI--PGVV-RLDEFQ---------VPS-DVSTVVECASPE   71 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SSCC--CC--SSSE-ECSSCC---------CCT-TCCEEEECSCHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cccc--cc--Ccee-eCCHHH---------Hhh-CCCEEEECCCHH
Confidence            35799999999999999998  4 676667777 4433  12  1000 112211         223 555555442211


Q ss_pred             CCccchHHHhcCCCCeEEEccC---CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          163 YDASSEEEILSGHPDFVLDCID---NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~D---n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .-.+....++....|+|+-+.-   +.+.+..|.++|++.|..++-..|
T Consensus        72 av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSG  120 (253)
T 1j5p_A           72 AVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSG  120 (253)
T ss_dssp             HHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCT
T ss_pred             HHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCC
Confidence            1112244556555888887654   556677888999998888765333

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=90.47  E-value=1.9  Score=42.77  Aligned_cols=135  Identities=16%  Similarity=0.161  Sum_probs=78.5

Q ss_pred             hhCCcEEEEcCChHHH-HHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGLGGVGS-HAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs-~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++..||.|||+|..|. ..+..|...|+.-+.++|.|                   ..|++.+++.+    +.+++  + 
T Consensus        24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~-------------------~~~a~~~a~~~----~~~~~--~-   77 (361)
T 3u3x_A           24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKD-------------------DALAAEFSAVY----ADARR--I-   77 (361)
T ss_dssp             --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSC-------------------HHHHHHHHHHS----SSCCE--E-
T ss_pred             ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCC-------------------HHHHHHHHHHc----CCCcc--c-
Confidence            3467999999999885 46667777777655666543                   23444444433    22221  1 


Q ss_pred             ccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCC
Q 013180          161 LLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTND  229 (448)
Q Consensus       161 ~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~d  229 (448)
                           .+.++++.. ++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+.--...-++
T Consensus        78 -----~~~~~ll~~~~vD~V~I~tp~~-~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~  151 (361)
T 3u3x_A           78 -----ATAEEILEDENIGLIVSAAVSS-ERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFE  151 (361)
T ss_dssp             -----SCHHHHHTCTTCCEEEECCCHH-HHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHT
T ss_pred             -----CCHHHHhcCCCCCEEEEeCChH-HHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhC
Confidence                 345666653 599999998774 566777788889999988432221000          111111111222254


Q ss_pred             -hhhHHHHHHHhhhcCccCCee
Q 013180          230 -PLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       230 -pl~~~~r~~l~~~~g~~g~i~  250 (448)
                       |..+.+|+.+..  |..|.+.
T Consensus       152 ~p~~~~~k~~i~~--g~iG~i~  171 (361)
T 3u3x_A          152 SPATVKAGELVAA--GAIGEVV  171 (361)
T ss_dssp             CHHHHHHHHHHHT--TTTSSEE
T ss_pred             CHHHHHHHHHHHc--CCCCCeE
Confidence             888888887764  5555443

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=90.47  E-value=1.2  Score=41.59  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=28.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   38 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRH   38 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence            56778888865 7999999999999996 57776643

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=90.47  E-value=0.24  Score=48.63  Aligned_cols=36  Identities=28%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+.+.
T Consensus        17 ~~dvvIIGgG~~Gl~~A~~La~~G~-~V~llE~~~~~   52 (382)
T 1ryi_A           17 HYEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   52 (382)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCC-cEEEEeCCCCC
Confidence            4589999999999999999999997 69999987543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=90.39  E-value=0.71  Score=42.51  Aligned_cols=36  Identities=17%  Similarity=0.434  Sum_probs=29.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   39 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRH   39 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467788999876 8999999999999996 47776643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=90.37  E-value=0.28  Score=49.15  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=31.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+|+|||+|..|..+|..|++.|+.+++|+|...
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~   38 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   38 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            46899999999999999999999987699999764

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=90.35  E-value=0.29  Score=48.17  Aligned_cols=34  Identities=35%  Similarity=0.408  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ..||.|||+|.+|..++..|+..|. ++|.|+|-|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~   41 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVF   41 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4689999999999999999999885 679999976

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=90.35  E-value=1.1  Score=44.26  Aligned_cols=104  Identities=17%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc------C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS------G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars------G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      +.-+|.|+|||.+|+.++..|...      |  +.=..+.|.+.-....          ++..   .-..+.+..  +.+
T Consensus         5 ~~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~----------~~~~---~~~~~~~~~--~~~   69 (331)
T 3c8m_A            5 KTINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNE----------RIDI---GKVISYKEK--GSL   69 (331)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECT----------TCCH---HHHHHHHHT--TCG
T ss_pred             cEEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhc----------ccCh---HHHhhhhcc--CCc
Confidence            346899999999999999999875      2  2323444544211110          0110   011122211  111


Q ss_pred             eEEEEeccCC-ccchHHHhcCCCCeEEEccCCH---HHHHHHHHHHHHcCCcEEEE
Q 013180          155 HIDAKVLLYD-ASSEEEILSGHPDFVLDCIDNI---DTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       155 ~v~~~~~~~~-~~~~~~ll~~~~D~VIda~Dn~---~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .     ...+ ..+.++++..+.|+|++|+.+.   .....+...|.++|+.++.+
T Consensus        70 ~-----~~~~~~~d~~~ll~~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvta  120 (331)
T 3c8m_A           70 D-----SLEYESISASEALARDFDIVVDATPASADGKKELAFYKETFENGKDVVTA  120 (331)
T ss_dssp             G-----GCCSEECCHHHHHHSSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred             c-----cccCCCCCHHHHhCCCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEec
Confidence            0     0011 1134555544699999999883   55666777889999999985

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=90.35  E-value=0.26  Score=49.03  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ...+|.|+|+|.+|+.+|..|+..|+ +++.|+|-+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            45789999999999999999999997 689998763

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=90.31  E-value=0.35  Score=47.54  Aligned_cols=94  Identities=20%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-c-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR-S-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar-s-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+|.|||+|.+|...+..|.+ . ++.-..++|.|.      .|            ....+++.    .+ +..  .  
T Consensus         4 ~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~------~~------------~~~~~a~~----~g-~~~--~--   56 (312)
T 1nvm_B            4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDA------AS------------DGLARAQR----MG-VTT--T--   56 (312)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCT------TC------------HHHHHHHH----TT-CCE--E--
T ss_pred             CCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCCh------hh------------hHHHHHHH----cC-CCc--c--
Confidence            3589999999999999999976 3 444344445331      11            01111111    11 111  0  


Q ss_pred             cCCccchHHHhc----CCCCeEEEccCCHHHHHHHHHHHHHc--CCcEEEEcC
Q 013180          162 LYDASSEEEILS----GHPDFVLDCIDNIDTKVALLAACVRR--GLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~----~~~D~VIda~Dn~~~r~~l~~~c~~~--~ip~I~~~g  208 (448)
                         .++.++++.    .+.|+|++|+.+ .....+...|.+.  |+.+|+-..
T Consensus        57 ---~~~~e~ll~~~~~~~iDvV~~atp~-~~h~~~a~~al~a~~Gk~Vi~ekp  105 (312)
T 1nvm_B           57 ---YAGVEGLIKLPEFADIDFVFDATSA-SAHVQNEALLRQAKPGIRLIDLTP  105 (312)
T ss_dssp             ---SSHHHHHHHSGGGGGEEEEEECSCH-HHHHHHHHHHHHHCTTCEEEECST
T ss_pred             ---cCCHHHHHhccCCCCCcEEEECCCh-HHHHHHHHHHHHhCCCCEEEEcCc
Confidence               123344432    248999999994 5556666667777  999998443

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=90.31  E-value=1.3  Score=40.76  Aligned_cols=35  Identities=31%  Similarity=0.602  Sum_probs=29.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   44 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDRE   44 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66788999976 8999999999999996 47776643

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=90.25  E-value=0.78  Score=42.69  Aligned_cols=94  Identities=13%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHH--HcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLL--RSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~La--rsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+|+|+|+|-+|..++.++.  ..|..=+.++|.|.-.  ..+++.+.                      .+.|..   
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~--kiG~~~i~----------------------GvpV~~---  136 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSND--LVGKTTED----------------------GIPVYG---  136 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTST--TTTCBCTT----------------------CCBEEE---
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchh--ccCceeEC----------------------CeEEeC---
Confidence            468999999999999998853  3456667788887421  22220110                      123332   


Q ss_pred             cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                         .+...+++.. +.|.+|-|+.+.. ...+.+.|.+.|+.-|+-..
T Consensus       137 ---~~dL~~~v~~~~Id~vIIAvPs~~-aq~v~d~lv~~GIk~I~nFa  180 (212)
T 3keo_A          137 ---ISTINDHLIDSDIETAILTVPSTE-AQEVADILVKAGIKGILSFS  180 (212)
T ss_dssp             ---GGGHHHHC-CCSCCEEEECSCGGG-HHHHHHHHHHHTCCEEEECS
T ss_pred             ---HHHHHHHHHHcCCCEEEEecCchh-HHHHHHHHHHcCCCEEEEcC
Confidence               1345556543 5899999997754 45788999999999998653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=90.25  E-value=0.26  Score=48.37  Aligned_cols=33  Identities=39%  Similarity=0.651  Sum_probs=28.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .+|.|||+|.+|+.++..|+..|. ++++++|.+
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            379999999999999999999994 478888765

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=90.25  E-value=0.27  Score=49.00  Aligned_cols=35  Identities=29%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D~  118 (448)
                      .+||+|||.|..|..+|..|.+.|-+ +|+|||...
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~   37 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNE   37 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCC
Confidence            68999999999999999999999875 899998764

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=90.25  E-value=1.1  Score=46.37  Aligned_cols=96  Identities=19%  Similarity=0.231  Sum_probs=61.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHH-hh-----------
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHF-SS-----------  149 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l-~~-----------  149 (448)
                      +.-||.|||||.+|...+..+.+. |+.=..+.|.                   -..|++.+.+.+ ..           
T Consensus        22 k~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~-------------------~~era~~~a~~~yG~~~~~~~~~~~~   82 (446)
T 3upl_A           22 KPIRIGLIGAGEMGTDIVTQVARMQGIEVGALSAR-------------------RLPNTFKAIRTAYGDEENAREATTES   82 (446)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECS-------------------STHHHHHHHHHHHSSSTTEEECSSHH
T ss_pred             CceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeC-------------------CHHHHHHHHHHhcCCccccccccchh
Confidence            346899999999999999887653 3322333333                   233444333322 10           


Q ss_pred             -----h-CCCceEEEEeccCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          150 -----I-FPECHIDAKVLLYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       150 -----i-nP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                           + .+.  +..+      .+.++++.. +.|+|++|+.++.....+...|.++|+.++.
T Consensus        83 ~i~~a~~~g~--~~v~------~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~  137 (446)
T 3upl_A           83 AMTRAIEAGK--IAVT------DDNDLILSNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVM  137 (446)
T ss_dssp             HHHHHHHTTC--EEEE------SCHHHHHTCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             hhhhhhccCC--ceEE------CCHHHHhcCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEe
Confidence                 0 011  1111      345666653 5999999999987778888899999999996

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=90.20  E-value=0.23  Score=53.07  Aligned_cols=36  Identities=28%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+..|+|||+|..|..+|..|++.|+ +++|+|.+.
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar~G~-~V~LiEr~~   56 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHKLGH-DVTIYERSA   56 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHcCCC-CEEEEcCCC
Confidence            346899999999999999999999998 699999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=90.07  E-value=0.54  Score=46.10  Aligned_cols=34  Identities=24%  Similarity=0.394  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .+.+++|+|||.|. ||..+|..|.+.| .++++++
T Consensus       162 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~h  196 (301)
T 1a4i_A          162 PIAGRHAVVVGRSKIVGAPMHDLLLWNN-ATVTTCH  196 (301)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTT-CEEEEEC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEE
Confidence            47899999999996 7999999999999 4599976

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.07  E-value=1  Score=43.21  Aligned_cols=37  Identities=14%  Similarity=0.186  Sum_probs=30.2

Q ss_pred             HHhhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|+++.|+|.|++   |+|..+|+.|++.|.. +.++|.+
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~-V~~~~r~   66 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAE-LAFTYQG   66 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCE-EEEEECS
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEEcCC
Confidence            35788999999984   3999999999999965 7776643

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=90.05  E-value=2.4  Score=41.51  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~   57 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   57 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC-EEEEEECC
Confidence            67999985 9999999999999994 68887765

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=90.05  E-value=0.25  Score=48.18  Aligned_cols=31  Identities=32%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      --|+|||+|..|+.+|..|++.|+. ++|+|.
T Consensus         5 yDViIVGaGpaGl~~A~~La~~G~~-V~v~Er   35 (397)
T 3oz2_A            5 YDVLVVGGGPGGSTAARYAAKYGLK-TLMIEK   35 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCC-EEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCc-EEEEeC
Confidence            3599999999999999999999985 888885

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=90.02  E-value=0.43  Score=44.36  Aligned_cols=36  Identities=22%  Similarity=0.469  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.+
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~   40 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLD   40 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            366788999975 8999999999999996 68887654

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=90.00  E-value=1.1  Score=42.64  Aligned_cols=35  Identities=23%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|++.|. ++.+++.
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r   76 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISR   76 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEES
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcC
Confidence            466788999975 7999999999999995 4666553

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=89.99  E-value=0.99  Score=42.68  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      |+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+.-
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~   41 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAV   41 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCS
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccch
Confidence            57788999976 7999999999999997 6888887643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=89.98  E-value=0.3  Score=47.80  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||.|||+|.+|+.++..|+..|.-.+.|+|-|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~   35 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   35 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC
Confidence            589999999999999999999997449998865

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=89.97  E-value=0.77  Score=43.69  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|. ++.++|.
T Consensus        23 ~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r   58 (302)
T 1w6u_A           23 SFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASR   58 (302)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence            477889999976 7999999999999996 5777764

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=89.96  E-value=0.26  Score=48.42  Aligned_cols=36  Identities=36%  Similarity=0.464  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ...|+|||+|-+|..+|..|++.|. +++|+|.+..-
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~~G~-~V~vie~~~~~   38 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFDPP   38 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCCCC
Confidence            3579999999999999999999996 59999987653

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=89.93  E-value=0.38  Score=47.27  Aligned_cols=132  Identities=19%  Similarity=0.209  Sum_probs=76.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||.|||+|.+|...+..|.+. ++.-+.++|.+                   ..+++.+++...    ..+  .+    
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~-------------------~~~~~~~~~~~~----~~~--~~----   53 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVR-------------------EDRLREMKEKLG----VEK--AY----   53 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSC-------------------HHHHHHHHHHHT----CSE--EE----
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCC-------------------HHHHHHHHHHhC----CCc--ee----
Confidence            4799999999999999998875 33333354432                   234444444331    001  11    


Q ss_pred             CccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCChhh
Q 013180          164 DASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDPLS  232 (448)
Q Consensus       164 ~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dpl~  232 (448)
                        .+.++++.. ++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+.--...-++|..
T Consensus        54 --~~~~~ll~~~~~D~V~i~tp~~-~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~  130 (344)
T 3ezy_A           54 --KDPHELIEDPNVDAVLVCSSTN-THSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNF  130 (344)
T ss_dssp             --SSHHHHHHCTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHH
T ss_pred             --CCHHHHhcCCCCCEEEEcCCCc-chHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHH
Confidence              234566652 589999999774 445555677788888887432221000          011122222334577888


Q ss_pred             HHHHHHHhhhcCccCCee
Q 013180          233 RAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       233 ~~~r~~l~~~~g~~g~i~  250 (448)
                      +.+|+.++.  |..|.+.
T Consensus       131 ~~~k~~i~~--G~iG~i~  146 (344)
T 3ezy_A          131 KKLKEAVEN--GTIGKPH  146 (344)
T ss_dssp             HHHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHHc--CCCCCeE
Confidence            899888865  5556554

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=89.88  E-value=1.1  Score=41.60  Aligned_cols=36  Identities=25%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ ||+|.++++.|+..|.. +.++|.+
T Consensus         6 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~-V~~~~r~   42 (261)
T 3n74_A            6 SLEGKVALITGAGSGFGEGMAKRFAKGGAK-VVIVDRD   42 (261)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEcCC
Confidence            467889999986 68999999999999964 8887754

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=89.87  E-value=1.1  Score=42.04  Aligned_cols=33  Identities=21%  Similarity=0.430  Sum_probs=28.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~Li  114 (448)
                      +|+++.|+|.|+ ||+|.++++.|++.|.. +.++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~   38 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGAN-VVLT   38 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEE
Confidence            578899999976 69999999999999975 5554

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=89.87  E-value=0.2  Score=48.94  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ...|+|||+|-+|+.+|..|++.|. +++|+|.+..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~~G~-~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATRAGL-NVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHHTTC-CEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCC
Confidence            3579999999999999999999997 6999998754

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=89.87  E-value=1.3  Score=41.43  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=29.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   40 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   40 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            367788999975 7999999999999996 57776643

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=89.85  E-value=0.21  Score=49.52  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=27.9

Q ss_pred             CcEEEEcCChHHHHH-HHHH-HHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHA-AAML-LRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~v-a~~L-arsGVg~i~LiD~D  117 (448)
                      .+|+|+|+|++|..+ ++.+ ...|..++..+|.+
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~  208 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRR  208 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence            799999999999999 7777 67898778887753

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=89.84  E-value=0.89  Score=42.31  Aligned_cols=38  Identities=16%  Similarity=0.166  Sum_probs=29.5

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCC--ceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGV--GRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGV--g~i~LiD~D  117 (448)
                      ..++.++|+|.|+ ||+|.++++.|+..|.  .++.++|.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~   57 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRN   57 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESC
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecC
Confidence            3466778888875 8999999999999995  578887764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=89.81  E-value=0.53  Score=46.26  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=50.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..++|+|||+|..|...+..|... ++.+|+++|.+                     |++.+++++.+.. .+++...  
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~---------------------~a~~la~~l~~~~-g~~~~~~--  175 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY---------------------ASPEILERIGRRC-GVPARMA--  175 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT---------------------CCHHHHHHHHHHH-TSCEEEC--
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc---------------------HHHHHHHHHHHhc-CCeEEEe--
Confidence            467899999999999999999874 78999997655                     2233344444322 2334332  


Q ss_pred             cCCccchHHHhcCCCCeEEEccCC
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                           +.++.+.+ .|+||.|+-+
T Consensus       176 -----~~~eav~~-aDIVi~aT~s  193 (313)
T 3hdj_A          176 -----APADIAAQ-ADIVVTATRS  193 (313)
T ss_dssp             -----CHHHHHHH-CSEEEECCCC
T ss_pred             -----CHHHHHhh-CCEEEEccCC
Confidence                 24555654 9999999976

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=89.75  E-value=0.36  Score=44.63  Aligned_cols=34  Identities=29%  Similarity=0.425  Sum_probs=30.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +...|+|||.|..|.++|..|++.|. +++|+|..
T Consensus         2 ~~~dVvVVGgG~aGl~aA~~la~~g~-~v~lie~~   35 (232)
T 2cul_A            2 AAYQVLIVGAGFSGAETAFWLAQKGV-RVGLLTQS   35 (232)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCC-CEEEEecC
Confidence            35689999999999999999999997 58999875

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=89.69  E-value=0.33  Score=45.98  Aligned_cols=31  Identities=35%  Similarity=0.425  Sum_probs=27.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|.|||+|.+|+.++..|.+.|. ++.++|.+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   32 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            69999999999999999999997 68887654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=89.68  E-value=0.4  Score=46.76  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      .+.+++|+|||.|. ||..+|..|.+.| .++++++
T Consensus       156 ~l~gk~vvVIG~s~iVG~p~A~lL~~~g-AtVtv~h  190 (288)
T 1b0a_A          156 DTFGLNAVVIGASNIVGRPMSMELLLAG-CTTTVTH  190 (288)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTT-CEEEEEC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHCC-CeEEEEe
Confidence            47899999999997 7999999999999 5688875

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=89.66  E-value=0.26  Score=47.65  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=30.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...|+|||+|..|..+|..|++.|. +++|+|.+
T Consensus         4 ~~dvvIIG~G~~Gl~~A~~La~~G~-~V~vlE~~   36 (369)
T 3dme_A            4 DIDCIVIGAGVVGLAIARALAAGGH-EVLVAEAA   36 (369)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence            3579999999999999999999997 69999987

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=89.66  E-value=0.86  Score=43.13  Aligned_cols=36  Identities=19%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus         3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   39 (280)
T 1xkq_A            3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS   39 (280)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence            467788888875 7999999999999996 57776653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=89.63  E-value=0.32  Score=47.51  Aligned_cols=32  Identities=31%  Similarity=0.298  Sum_probs=28.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      ||.|+|+|.+|+.++..|+..|.. ++.|+|-+
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~   34 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            799999999999999999999864 78998865

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=89.60  E-value=0.35  Score=46.81  Aligned_cols=33  Identities=33%  Similarity=0.469  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|++.|. +++++|.+
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   39 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLN   39 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence            4689999999999999999999996 67887654

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=89.60  E-value=1.3  Score=40.55  Aligned_cols=28  Identities=36%  Similarity=0.529  Sum_probs=22.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEE
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~L  113 (448)
                      ++|+|.|+ ||+|.++++.|++.|.. +.+
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~~-v~~   30 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGCK-VLV   30 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCE-EEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCE-EEE
Confidence            56777764 89999999999999965 444

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=89.56  E-value=0.75  Score=44.14  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+|++++|+|.|+ ||+|.++++.|++.|.. +.++|.
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~~   81 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYAREGAD-VAINYL   81 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEECC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            3678899999976 79999999999999965 666554

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=89.56  E-value=0.48  Score=46.56  Aligned_cols=130  Identities=13%  Similarity=0.133  Sum_probs=78.5

Q ss_pred             hhCCcEEEEcCChHHH-HHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           82 VSGSYVVVIGLGGVGS-HAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs-~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++.-||.|||||.+|. ..+..|... ++.-+.++|.|.=      +                         +.+.  .+
T Consensus        23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~------~-------------------------~g~~--~~   69 (330)
T 4ew6_A           23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT------V-------------------------EGVN--SY   69 (330)
T ss_dssp             CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC------C-------------------------TTSE--EE
T ss_pred             CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh------h-------------------------cCCC--cc
Confidence            4557899999999998 688888875 5555567776620      0                         1222  11


Q ss_pred             eccCCccchHHHhc--CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEccccccc
Q 013180          160 VLLYDASSEEEILS--GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLREST  227 (448)
Q Consensus       160 ~~~~~~~~~~~ll~--~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~  227 (448)
                            .+.++++.  .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.--...-
T Consensus        70 ------~~~~~ll~~~~~vD~V~i~tp~-~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r  142 (330)
T 4ew6_A           70 ------TTIEAMLDAEPSIDAVSLCMPP-QYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSR  142 (330)
T ss_dssp             ------SSHHHHHHHCTTCCEEEECSCH-HHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             ------CCHHHHHhCCCCCCEEEEeCCc-HHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhh
Confidence                  23445553  258999988875 5667777778888888886332211000          0112222233345


Q ss_pred             CChhhHHHHHHHhhhcCccCCeeEEe
Q 013180          228 NDPLSRAVMHRLRKDYGIEGGIPVVF  253 (448)
Q Consensus       228 ~dpl~~~~r~~l~~~~g~~g~i~~v~  253 (448)
                      +.|..+.+|+.++.  |..|.+..++
T Consensus       143 ~~p~~~~~k~~i~~--g~iG~v~~~~  166 (330)
T 4ew6_A          143 YAPAVEAAKAFLAS--TTIKSVHVIW  166 (330)
T ss_dssp             GSTTHHHHHHHHHS--SCEEEEEEEE
T ss_pred             ccHHHHHHHHHHhc--CCceEEEEEE
Confidence            78888999988875  4445444443

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=89.54  E-value=1.9  Score=40.97  Aligned_cols=36  Identities=19%  Similarity=0.227  Sum_probs=26.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .-+.++|+|.|+ |++|+++++.|+..|. +++++|.+
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~   45 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRN   45 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecC
Confidence            445677888865 8999999999999995 68887754

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=89.53  E-value=1  Score=43.86  Aligned_cols=134  Identities=13%  Similarity=0.112  Sum_probs=72.7

Q ss_pred             hCCcEEEEcCChHHH-HHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGS-HAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs-~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +..+|.|||+|.+|. ..+..|...|+.-+.++|.|.-                   |++.++++    ++.+++     
T Consensus         3 ~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~-------------------~~~~~a~~----~~~~~~-----   54 (336)
T 2p2s_A            3 KKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSD-------------------NRAKFTSL----FPSVPF-----   54 (336)
T ss_dssp             -CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTT-------------------SCHHHHHH----STTCCB-----
T ss_pred             CccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHH-------------------HHHHHHHh----cCCCcc-----
Confidence            346899999999996 5777777677765567776521                   22222222    222211     


Q ss_pred             cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccccCCh
Q 013180          162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRESTNDP  230 (448)
Q Consensus       162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~~~dp  230 (448)
                       +  .+.++++.. ++|+|+.|+.+. ....+...|.+.|++++.---.+....          -..+.+.-....-++|
T Consensus        55 -~--~~~~~ll~~~~~D~V~i~tp~~-~h~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p  130 (336)
T 2p2s_A           55 -A--ASAEQLITDASIDLIACAVIPC-DRAELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINV  130 (336)
T ss_dssp             -C--SCHHHHHTCTTCCEEEECSCGG-GHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTC
T ss_pred             -c--CCHHHHhhCCCCCEEEEeCChh-hHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCc
Confidence             1  234566642 588888888763 345555567778888776321111000          0011122222233567


Q ss_pred             h-hHHHHHHHhhhcCccCCee
Q 013180          231 L-SRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       231 l-~~~~r~~l~~~~g~~g~i~  250 (448)
                      . .+.+|+.++.  |..|.+.
T Consensus       131 ~~~~~~~~~i~~--g~iG~i~  149 (336)
T 2p2s_A          131 DSALFAGELVQR--GEIGRVI  149 (336)
T ss_dssp             HHHHHHHHHHHT--TTTSSEE
T ss_pred             HHHHHHHHHHhC--CCCCceE
Confidence            6 7778877764  5555543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=89.52  E-value=0.32  Score=47.66  Aligned_cols=33  Identities=36%  Similarity=0.672  Sum_probs=28.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|.|+|++|..+++.+...|. ++..+|.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~  198 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDI  198 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeC
Confidence            46789999999999999999999998 6777654

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=89.51  E-value=0.36  Score=45.85  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      ++|.|||+|.+|+.++..|...|.. ++.++|.+
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~   35 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            4799999999999999999999963 67777654

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=89.47  E-value=0.24  Score=48.26  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..+|+|||+|..|..+|..|++.|..+++|+|.+.
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~   38 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT   38 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC
Confidence            45799999999999999999999975799999874

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=89.45  E-value=2  Score=41.55  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHc-CCceEEEEeCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRS-GVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~Lars-GVg~i~LiD~D  117 (448)
                      +|+|.|+ |++|+++++.|+.. |. +++++|..
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~-~V~~~~r~   34 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKL   34 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCC-eEEEEecC
Confidence            6999986 99999999999998 44 67777754

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=89.45  E-value=1.4  Score=41.43  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~   54 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   54 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3466788999975 7999999999999996 57776643

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=89.44  E-value=0.72  Score=43.02  Aligned_cols=33  Identities=15%  Similarity=0.191  Sum_probs=26.3

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ..++|+|.|+ ||+|.++++.|+..|. ++.+++.
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~   39 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYH   39 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcC
Confidence            4577888876 7899999999999997 4666543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=89.42  E-value=0.85  Score=43.43  Aligned_cols=36  Identities=31%  Similarity=0.549  Sum_probs=29.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+++.|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~   62 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADID   62 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            477888999875 7999999999999997 57777643

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=89.41  E-value=0.32  Score=49.55  Aligned_cols=37  Identities=30%  Similarity=0.263  Sum_probs=32.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+..++|+|+|+|++|..+++.+.+.|. +++++|.+.
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~  205 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRP  205 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCG
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCH
Confidence            3678999999999999999999999998 799988653

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=89.38  E-value=1.6  Score=47.03  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=28.3

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+++++|+|.|+ |++|+++++.|+..|. +++++|..
T Consensus         8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~-~V~~~~r~   44 (699)
T 1z45_A            8 ESTSKIVLVTGGAGYIGSHTVVELIENGY-DCVVADNL   44 (699)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECC
Confidence            466789999985 9999999999999995 67777643

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=89.37  E-value=0.45  Score=46.63  Aligned_cols=94  Identities=22%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|.|+|++|..+++.+...|..++..+|.+.                   .|.+.+    +++....-+.. ...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~-------------------~~~~~~----~~lGa~~~i~~-~~~  226 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDD-------------------DRLALA----REVGADAAVKS-GAG  226 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCH-------------------HHHHHH----HHTTCSEEEEC-STT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCH-------------------HHHHHH----HHcCCCEEEcC-CCc
Confidence            357899999999999998888888767788776431                   233332    22322211111 110


Q ss_pred             CCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCC
Q 013180          163 YDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGL  201 (448)
Q Consensus       163 ~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~i  201 (448)
                      + .+...++..+ .+|+||||+.+..+-....+..+..|.
T Consensus       227 ~-~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~  265 (345)
T 3jv7_A          227 A-ADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGH  265 (345)
T ss_dssp             H-HHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEE
T ss_pred             H-HHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCE
Confidence            0 0112222221 599999999987655555555444443

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=89.33  E-value=0.81  Score=43.04  Aligned_cols=84  Identities=14%  Similarity=0.187  Sum_probs=50.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .|+++.|+|.|+ ||+|.++|+.|++.|.. +.++|..                +-...+.+.+.+.+.+..+  ++..+
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~-V~~~~r~----------------~~~~~~~~~~~~~~~~~~~--~~~~~   68 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVN-LVLHYHQ----------------AKDSDTANKLKDELEDQGA--KVALY   68 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCE-EEEEESC----------------GGGHHHHHHHHHHHHTTTC--EEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEecC----------------ccCHHHHHHHHHHHHhcCC--cEEEE
Confidence            467889999976 79999999999999974 6665532                1122345556666665543  45544


Q ss_pred             eccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          160 VLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       160 ~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      ...++. +....++.      +..|++|.+.
T Consensus        69 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lvnnA   99 (262)
T 3ksu_A           69 QSDLSNEEEVAKLFDFAEKEFGKVDIAINTV   99 (262)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHHCSEEEEEECC
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            444432 22333322      2467776554

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=89.31  E-value=0.36  Score=45.26  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|.|||+|.+|+.++..|+..|..+++++|.+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            69999999999999999999995467776643

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=89.31  E-value=0.5  Score=45.94  Aligned_cols=35  Identities=34%  Similarity=0.495  Sum_probs=29.8

Q ss_pred             HhhCCcEEEEcCCh-HHHHHHHHHHHcC-CceEEEEe
Q 013180           81 KVSGSYVVVIGLGG-VGSHAAAMLLRSG-VGRLLLVD  115 (448)
Q Consensus        81 kL~~~~VlVVG~GG-vGs~va~~LarsG-Vg~i~LiD  115 (448)
                      .|.+++|+|||.|. ||..+|.+|.+.| -.++++++
T Consensus       155 ~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h  191 (281)
T 2c2x_A          155 SIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCH  191 (281)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence            47899999999997 6999999999984 46788863

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=89.29  E-value=0.35  Score=47.32  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC---ceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV---GRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV---g~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|+++|+   .+++++|.+
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~   58 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPD   58 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence            4589999999999999999999995   578876643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=89.26  E-value=0.3  Score=47.81  Aligned_cols=37  Identities=19%  Similarity=0.249  Sum_probs=30.3

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+....+|.|||+|.+|+.++.+|++.|. +++++|.+
T Consensus        27 ~~~~~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~   63 (320)
T 4dll_A           27 SDPYARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRT   63 (320)
T ss_dssp             --CCCSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSC
T ss_pred             cccCCCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCC
Confidence            34556799999999999999999999996 57777654

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=89.26  E-value=0.35  Score=47.88  Aligned_cols=34  Identities=32%  Similarity=0.401  Sum_probs=30.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ..|+|||+|.+|..+|..|++.|. +++|+|....
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~-~V~vlE~~~~   38 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGH-RVLVLERHTF   38 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCC
Confidence            579999999999999999999997 5999998754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=89.25  E-value=0.36  Score=47.58  Aligned_cols=33  Identities=36%  Similarity=0.570  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .+|.|+|+|.+|+.++..|+..|+ .++.|+|-+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   34 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIK   34 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCc
Confidence            379999999999999999999997 588998865

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=89.24  E-value=0.49  Score=46.90  Aligned_cols=33  Identities=27%  Similarity=0.459  Sum_probs=28.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+|++|..++..+...|. ++..+|.
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~  221 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSS  221 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEec
Confidence            35799999999999999999999998 6766653

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=89.23  E-value=0.33  Score=47.52  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=73.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHH-Hc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLL-RS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~La-rs-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ..+|.|||+|.+|...+..|. .. |+.-+.++|.+                   ..|++.+++.    .+...  .+  
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~-------------------~~~~~~~a~~----~g~~~--~~--   60 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALD-------------------SNQLEWAKNE----LGVET--TY--   60 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSC-------------------HHHHHHHHHT----TCCSE--EE--
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCC-------------------HHHHHHHHHH----hCCCc--cc--
Confidence            358999999999999999987 43 44334455543                   2233333322    11111  11  


Q ss_pred             cCCccchHHHhcC-CCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc----------CCC-ceEEcccccccCC
Q 013180          162 LYDASSEEEILSG-HPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA----------DPT-RIRVADLRESTND  229 (448)
Q Consensus       162 ~~~~~~~~~ll~~-~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~----------dpt-~i~i~di~~~~~d  229 (448)
                          .+.++++.. ++|+|+.|+.+... ..+...|.+.|++++.---.+...          .-. .+.+......-++
T Consensus        61 ----~~~~~~l~~~~~D~V~i~tp~~~h-~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~  135 (346)
T 3cea_A           61 ----TNYKDMIDTENIDAIFIVAPTPFH-PEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYD  135 (346)
T ss_dssp             ----SCHHHHHTTSCCSEEEECSCGGGH-HHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTC
T ss_pred             ----CCHHHHhcCCCCCEEEEeCChHhH-HHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccC
Confidence                234566642 59999999977543 444456677899888632221100          011 2223223334467


Q ss_pred             hhhHHHHHHHhhhcCccCCe
Q 013180          230 PLSRAVMHRLRKDYGIEGGI  249 (448)
Q Consensus       230 pl~~~~r~~l~~~~g~~g~i  249 (448)
                      |....+++.++.  |..|.+
T Consensus       136 p~~~~~~~~i~~--g~iG~i  153 (346)
T 3cea_A          136 DSYRYAKKIVDN--GDIGKI  153 (346)
T ss_dssp             HHHHHHHHHHHT--TTTCSE
T ss_pred             HHHHHHHHHHHc--CCCCCe
Confidence            777777777754  444544

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=89.22  E-value=0.55  Score=46.03  Aligned_cols=136  Identities=14%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .||.|||||+.|...+..| ..++.=..++|.+.-                  .+++.+++...+....++  .+     
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~------------------~~~~~~~~~~~~~~~~~~--~~-----   56 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPE------------------EDLSKLEKAISEMNIKPK--KY-----   56 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTT------------------CCCHHHHHHHHTTTCCCE--EC-----
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCch------------------hhHHHHHHHHHHcCCCCc--cc-----
Confidence            4899999999998777776 444444445554310                  122333444444332122  11     


Q ss_pred             ccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCc------------cCCCceEEcccccccCChh
Q 013180          165 ASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGAR------------ADPTRIRVADLRESTNDPL  231 (448)
Q Consensus       165 ~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k------------~dpt~i~i~di~~~~~dpl  231 (448)
                       .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+..            -....+.+.-....-++|.
T Consensus        57 -~~~~~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~  134 (337)
T 3ip3_A           57 -NNWWEMLEKEKPDILVINTVF-SLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPH  134 (337)
T ss_dssp             -SSHHHHHHHHCCSEEEECSSH-HHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHH
T ss_pred             -CCHHHHhcCCCCCEEEEeCCc-chHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHH
Confidence             24456654 259999999866 45667777888899998873222210            0011110222233456788


Q ss_pred             hHHHHHHHhhhcCccCCee
Q 013180          232 SRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       232 ~~~~r~~l~~~~g~~g~i~  250 (448)
                      .+.+|+.++.  |..|.+.
T Consensus       135 ~~~~k~~i~~--g~iG~i~  151 (337)
T 3ip3_A          135 FLTAKKLVSE--GAVGEIR  151 (337)
T ss_dssp             HHHHHHHHHH--TTTSSEE
T ss_pred             HHHHHHHHhc--CCccceE
Confidence            8888888865  5555543

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=89.19  E-value=0.38  Score=50.26  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH---cCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR---SGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar---sGVg~i~LiD~D~V  119 (448)
                      ..+|+|||.|..|..+|..|++   .|+ +++|+|.+.+
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   42 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQA-NITLIESAAI   42 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSC-EEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCC-EEEEECCCCC
Confidence            4689999999999999999999   997 6999998654

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=89.17  E-value=0.29  Score=48.77  Aligned_cols=34  Identities=32%  Similarity=0.528  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +..|+|||+|..|+.+|..|++.|+ +++|+|.+.
T Consensus         5 ~~dVvIIGgG~aGl~~A~~La~~G~-~V~v~E~~~   38 (421)
T 3nix_A            5 KVDVLVIGAGPAGTVAASLVNKSGF-KVKIVEKQK   38 (421)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             cCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            3589999999999999999999998 699999875

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=89.17  E-value=1.3  Score=44.61  Aligned_cols=136  Identities=17%  Similarity=0.143  Sum_probs=80.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      +-||.|||||.+|..-+..|.+.+.      ..+.|+                .-.|....|++.+++++.    ..+  
T Consensus        26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elv----------------av~d~~~~~a~~~a~~~~----~~~--   83 (412)
T 4gqa_A           26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLY----------------ALADQDQAMAERHAAKLG----AEK--   83 (412)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEE----------------EEECSSHHHHHHHHHHHT----CSE--
T ss_pred             cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEE----------------EEEcCCHHHHHHHHHHcC----CCe--
Confidence            3589999999999988888877641      122221                112334456665555542    111  


Q ss_pred             EEeccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccC----------CCceEEcccccc
Q 013180          158 AKVLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARAD----------PTRIRVADLRES  226 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~d----------pt~i~i~di~~~  226 (448)
                      ++      .+.++++. .++|+|+.|+.+ .....+...|.+.|++++.---.+....          -..+.+.-....
T Consensus        84 ~y------~d~~~ll~~~~vD~V~I~tp~-~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~  156 (412)
T 4gqa_A           84 AY------GDWRELVNDPQVDVVDITSPN-HLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNN  156 (412)
T ss_dssp             EE------SSHHHHHHCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred             EE------CCHHHHhcCCCCCEEEECCCc-HHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccce
Confidence            11      24566664 358999999877 4556677778888998887432221000          011122222334


Q ss_pred             cCChhhHHHHHHHhhhcCccCCee
Q 013180          227 TNDPLSRAVMHRLRKDYGIEGGIP  250 (448)
Q Consensus       227 ~~dpl~~~~r~~l~~~~g~~g~i~  250 (448)
                      -++|..+.+|+.+..  |..|.+.
T Consensus       157 R~~p~~~~~k~~i~~--G~iG~i~  178 (412)
T 4gqa_A          157 IKTPAALLAKQIIAR--GDIGEPV  178 (412)
T ss_dssp             GTSHHHHHHHHHHHH--TTTCSEE
T ss_pred             ecCHHHHHHHHHHhc--CCcCCeE
Confidence            578999999988875  5556543

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=89.14  E-value=0.33  Score=49.29  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=30.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+|+|||+|-+|..+|..|++.|+ +++|+|...
T Consensus        23 ~~ViIVGaGpaGl~~A~~La~~G~-~V~viE~~~   55 (430)
T 3ihm_A           23 KRIGIVGAGTAGLHLGLFLRQHDV-DVTVYTDRK   55 (430)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTC-EEEEEESCC
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence            689999999999999999999998 699999765

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=89.12  E-value=1.4  Score=45.70  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..-+.+.|.+
T Consensus       236 ~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~  272 (456)
T 3r3j_A          236 NLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSN  272 (456)
T ss_dssp             CSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSS
T ss_pred             CccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3789999999999999999999999998877787755

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=89.09  E-value=1.2  Score=42.70  Aligned_cols=36  Identities=19%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             HhhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+++.|+|.|++   |+|..+|+.|++.|.. +.++|.+
T Consensus        27 ~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~-V~~~~r~   65 (296)
T 3k31_A           27 LMEGKKGVIIGVANDKSLAWGIAKAVCAQGAE-VALTYLS   65 (296)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             ccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCE-EEEEeCC
Confidence            4678899999986   9999999999999975 7777653

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=89.07  E-value=0.89  Score=46.19  Aligned_cols=101  Identities=14%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-------eEEEEeCCccccCCCcccccccCCcc-CchHHHHHHHH-Hh-hhCCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-------RLLLVDFDQVSVSSLNRHAVATRADV-GTPKALCLKKH-FS-SIFPEC  154 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-------~i~LiD~D~V~~sNLnRq~l~~~~dv-G~~Kv~~~~~~-l~-~inP~v  154 (448)
                      .||.|+|+|..|+.+|..|++.|-+       .++|.-.|.               ++ ++.-++.+.++ -. ..-|.+
T Consensus        35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~---------------e~~~~~~~e~in~~~~N~~YLpgv   99 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEE---------------EINGEKLTEIINTRHQNVKYLPGI   99 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCC---------------BSSSCBHHHHHTTTCCBTTTBTTC
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcch---------------HhhhHHHHHHHHhcCcCcccCCCC
Confidence            4899999999999999999998743       366653331               11 11111111100 00 011222


Q ss_pred             e----EEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH--HcCCcEEEEc
Q 013180          155 H----IDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV--RRGLKVLCAT  207 (448)
Q Consensus       155 ~----v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~--~~~ip~I~~~  207 (448)
                      +    |.+.      .+..+.+.+ .|+||-++-+...+..+.++..  ..+.++|++.
T Consensus       100 ~Lp~~i~~t------~dl~~al~~-ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          100 TLPDNLVAN------PDLIDSVKD-VDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             CCCSSEEEE------SCHHHHHTT-CSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred             cCCCCcEEe------CCHHHHHhc-CCEEEEECChhhhHHHHHHhccccCCCceeEEec
Confidence            2    2221      234566665 9999999999888887776642  3567787754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=89.00  E-value=0.39  Score=47.50  Aligned_cols=36  Identities=25%  Similarity=0.158  Sum_probs=31.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ...+|+|||+|..|..+|..|++.|+ +++|+|.+..
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~-~v~viE~~~~   45 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGW-DVRLHEKSSE   45 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEecCCC
Confidence            46789999999999999999999996 5999987643

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=88.94  E-value=0.32  Score=48.25  Aligned_cols=37  Identities=27%  Similarity=0.469  Sum_probs=32.1

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|.+
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~  178 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRH  178 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSS
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            36889999999999999999999999996 57777654

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.88  E-value=1.7  Score=40.55  Aligned_cols=35  Identities=23%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             HhhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|++   |+|.++|+.|++.|.. +.++|.
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~-V~~~~r   41 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGAR-LIFTYA   41 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCE-EEEecC
Confidence            3678899999984   3999999999999975 777654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=88.87  E-value=0.41  Score=46.99  Aligned_cols=35  Identities=20%  Similarity=0.545  Sum_probs=30.7

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|.+++|.|||+|.+|..+|+.|...|. ++..+|.
T Consensus       139 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~  173 (313)
T 2ekl_A          139 ELAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDI  173 (313)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECC
Confidence            5889999999999999999999999996 5666654

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=88.85  E-value=1.8  Score=41.34  Aligned_cols=36  Identities=19%  Similarity=0.136  Sum_probs=27.2

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      +..++++.|+|.|+ ||+|.++++.|++.|. ++.++|
T Consensus         4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~   40 (291)
T 1e7w_A            4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHY   40 (291)
T ss_dssp             ----CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             ccCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEc
Confidence            34577888888865 7999999999999996 577766

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=88.84  E-value=0.41  Score=46.93  Aligned_cols=34  Identities=29%  Similarity=0.446  Sum_probs=29.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|.++|.. ++.++|.+
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~   67 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   67 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECC
Confidence            47899999999999999999999974 78887755

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=88.72  E-value=0.97  Score=42.72  Aligned_cols=40  Identities=28%  Similarity=0.461  Sum_probs=31.6

Q ss_pred             HHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           79 QQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        79 q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      +..|+++.|+|.|+ ||+|.++|+.|++.|. ++.++|.+.-
T Consensus        23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~   63 (266)
T 3uxy_A           23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVA   63 (266)
T ss_dssp             ---CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCT
T ss_pred             hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH
Confidence            55788999999976 7999999999999996 5888876543

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=88.71  E-value=0.42  Score=50.22  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH---cCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR---SGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar---sGVg~i~LiD~D~V  119 (448)
                      ..+|+|||.|..|..+|..|++   .|+ +++|||.+.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~-~V~liE~~~~   62 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTA-DITLLQAPDI   62 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSS-EEEEEECCCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCC-cEEEEeCCCC
Confidence            5689999999999999999999   887 7999998754

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=88.69  E-value=1.8  Score=42.56  Aligned_cols=33  Identities=33%  Similarity=0.453  Sum_probs=28.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHc-C-CceEEEEeCC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRS-G-VGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~Lars-G-Vg~i~LiD~D  117 (448)
                      .||.|+| +|.||+.++..|+.. + +.+|.|+|-+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~   36 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA   36 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecC
Confidence            3799999 899999999999876 5 4689998876

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=88.68  E-value=1.5  Score=40.74  Aligned_cols=35  Identities=23%  Similarity=0.418  Sum_probs=28.8

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+++++|+|.|+ ||+|.++++.|++.|.. +.++|.
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~-V~~~~r   41 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAK-VIGTAT   41 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEeC
Confidence            367788899876 79999999999999974 667664

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=88.66  E-value=1  Score=41.00  Aligned_cols=33  Identities=30%  Similarity=0.458  Sum_probs=26.6

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++|+|.| .||+|.++++.|++.|. ++.++|.+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~   38 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARD   38 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            56788886 58999999999999996 57776643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=88.65  E-value=0.66  Score=50.27  Aligned_cols=35  Identities=31%  Similarity=0.414  Sum_probs=31.0

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ..++|+|||.|..|..+|..|++.|. +++|+|...
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~-~V~liE~~~  424 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGY-DVVLAEAGR  424 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence            35789999999999999999999996 599999753

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=88.57  E-value=0.39  Score=47.54  Aligned_cols=34  Identities=21%  Similarity=0.416  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +.+|+|||+|..|..+|..|++.|+ +++|+|...
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~   35 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQT   35 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSC
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            3579999999999999999999997 599998765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=88.55  E-value=0.44  Score=47.17  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=31.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|.|||+|.+|..+|+.|...|. ++..+|.+
T Consensus       147 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  182 (334)
T 2dbq_A          147 DVYGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRT  182 (334)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            5888999999999999999999999996 57777654

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=88.54  E-value=2.1  Score=44.29  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=33.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|.|.|-||+.+++.|...|..-+.+.|.+
T Consensus       227 ~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~  263 (449)
T 1bgv_A          227 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD  263 (449)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            4788999999999999999999999999888888865

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=88.50  E-value=0.4  Score=45.93  Aligned_cols=33  Identities=33%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|.|||+|.+|+.++..|+..|. +++++|.+
T Consensus         4 ~~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~   36 (301)
T 3cky_A            4 SIKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLM   36 (301)
T ss_dssp             CCEEEEECCCTTHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-eEEEEeCC
Confidence            3689999999999999999999996 57776643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=88.50  E-value=0.4  Score=48.28  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+..++|+|+|+|++|..+++.+.+.|. +++++|..
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~  204 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVR  204 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            5678999999999999999999999998 59998865

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=88.49  E-value=1.5  Score=42.10  Aligned_cols=35  Identities=26%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +++++|+|.|+ ||+|.++++.|++.|. ++.++|.+
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~   59 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN   59 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            66788888865 7999999999999996 57776643

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=88.47  E-value=0.56  Score=45.73  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|.|+ ||+|..+++.+...|. ++..+|.+
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~  183 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGG  183 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3678999999 9999999999999998 78777643

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=88.47  E-value=0.34  Score=47.23  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=64.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++..||.|||+|.+|...+..|.+..--++. ++|.|.-.   +.+                         ..+.+..+ 
T Consensus         7 M~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~---~~~-------------------------~g~~~~~~-   57 (304)
T 3bio_A            7 DKKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE---VPF-------------------------ELQPFRVV-   57 (304)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------------------------------CCTTSCEE-
T ss_pred             CCCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH---HHH-------------------------cCCCcCCH-
Confidence            3456899999999999999999885323344 66655211   100                         01111111 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC-CC------------ccCCCceEEccccccc
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA-GA------------RADPTRIRVADLREST  227 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~-G~------------k~dpt~i~i~di~~~~  227 (448)
                           +...+. . ++|+|++|+.+.. ...+...|.+.|+++|...-. +.            +.....+.++-    -
T Consensus        58 -----~~l~~~-~-~~DvViiatp~~~-h~~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~v~~----~  125 (304)
T 3bio_A           58 -----SDIEQL-E-SVDVALVCSPSRE-VERTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAAVIAS----G  125 (304)
T ss_dssp             -----SSGGGS-S-SCCEEEECSCHHH-HHHHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEECSC----B
T ss_pred             -----HHHHhC-C-CCCEEEECCCchh-hHHHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEEEeC----C
Confidence                 111222 2 4888888887643 344555677788888864221 11            00011122221    3


Q ss_pred             CChhhHHHHHHHhh
Q 013180          228 NDPLSRAVMHRLRK  241 (448)
Q Consensus       228 ~dpl~~~~r~~l~~  241 (448)
                      .+|-...+++.+..
T Consensus       126 ~~p~~~~~~~~i~~  139 (304)
T 3bio_A          126 WDPGSDSVVRTLMQ  139 (304)
T ss_dssp             BTTBHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHC
Confidence            67888888888765

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=88.45  E-value=1.4  Score=40.14  Aligned_cols=29  Identities=24%  Similarity=0.391  Sum_probs=23.5

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEE
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~Li  114 (448)
                      ++|+|.|+ ||+|.++++.|+..|. ++.++
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~   31 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIH   31 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEE
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEE
Confidence            46788865 8999999999999996 46554

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=88.44  E-value=0.43  Score=46.40  Aligned_cols=32  Identities=25%  Similarity=0.159  Sum_probs=27.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|+|+|+|++|+.++..|+ +| .++++++.+
T Consensus         2 ~mkI~IiGaGa~G~~~a~~L~-~g-~~V~~~~r~   33 (307)
T 3ego_A            2 SLKIGIIGGGSVGLLCAYYLS-LY-HDVTVVTRR   33 (307)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TT-SEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHh-cC-CceEEEECC
Confidence            368999999999999999999 88 468886654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=88.44  E-value=0.36  Score=47.67  Aligned_cols=36  Identities=33%  Similarity=0.373  Sum_probs=31.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|.|||+|.+|..+|+.|...|. ++.++|.+
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~  187 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGR  187 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESS
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence            5888999999999999999999999997 58887754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=88.43  E-value=0.36  Score=47.36  Aligned_cols=33  Identities=30%  Similarity=0.637  Sum_probs=28.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|+|+||+|..+++.+...|. ++..+|.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~  196 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI  196 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence            35789999999999999999999997 6777653

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=88.42  E-value=0.45  Score=47.79  Aligned_cols=36  Identities=39%  Similarity=0.640  Sum_probs=32.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|+|+|.||..+|+.|...|. ++.+.|.+
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~  207 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTD  207 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            4788999999999999999999999997 56688865

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=88.41  E-value=0.42  Score=50.12  Aligned_cols=36  Identities=28%  Similarity=0.543  Sum_probs=32.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+++|+|+|+|.+|..+++.|...|. ++.++|.+
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~  306 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEID  306 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            3678999999999999999999999997 78887765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1yova1	529	c.111.1.2 (A:6-534) Amyloid beta precursor protein	4e-33
d1yovb1	426	c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [T	1e-26
d1jw9b_	247	c.111.1.1 (B:) Molybdenum cofactor biosynthesis pr	2e-15
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	2e-04
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	0.004

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (324), Expect = 4e-33
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 3/144 (2%)

Query: 69  RNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA 128
           R ++ +G   Q+ +  ++V +I     G+     L+  G+G   ++D +QVS      + 
Sbjct: 10  RQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNF 69

Query: 129 VATRADVGTPKALCLKKHFSSIFPECHIDA--KVLLYDASSEEEILSGHPDFVLDCIDNI 186
              R+ +G  +A    +    +  +       +       ++          V+      
Sbjct: 70  FLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRF-TVVVATQLPE 128

Query: 187 DTKVALLAACVRRGLKVLCATGAG 210
            T + L        + +L     G
Sbjct: 129 STSLRLADVLWNSQIPLLICRTYG 152

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} Length = 426

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-26
 Identities = 48/272 (17%), Positives = 87/272 (31%), Gaps = 42/272 (15%)

Query: 79  QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTP 138
           Q  +    V+VIG GG+G      L  SG  ++ ++D D + VS+LNR  +    D+G P
Sbjct: 32  QFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRP 91

Query: 139 KALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR 198
           KA    +  +   P C++          ++          ++  +D+I  +  +    + 
Sbjct: 92  KAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFY--RQFHIIVCGLDSIIARRWINGMLIS 149

Query: 199 RGLKVLCATGAGARADP---TRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPV---- 251
                       +   P                 P   A +    + Y  +   P+    
Sbjct: 150 LL-NYEDGVLDPSSIVPLIDGGTEGFKGNARVILPGMTACIECTLELYPPQVNFPMCTIA 208

Query: 252 ----------------VFSLEKPKAKLLPFTGPSGE----------------DENPSDYQ 279
                            +  E+P  + +P  G   E                +     Y+
Sbjct: 209 SMPRLPEHCIEYVRMLQWPKEQPFGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYR 268

Query: 280 MVPGFRVRIIPVLGSIPAIFGMVMASHVVTQL 311
           +  G   RIIP + S  A+   V A+ V    
Sbjct: 269 LTQGVVKRIIPAVASTNAVIAAVCATEVFKIA 300

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} Length = 247

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

 Score = 73.5 bits (179), Expect = 2e-15
 Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 5/165 (3%)

Query: 56  DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLL 113
           +L   E+   +  R I    F  + Q+ +  S V+++GLGG+G  A+  L  +GVG L L
Sbjct: 2   ELSDQEM--LRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTL 59

Query: 114 VDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILS 173
           +DFD VS+S+L R  + + A VG PK    +   + I P   I     L D +    +++
Sbjct: 60  LDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIA 119

Query: 174 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRI 218
            H   + DC DN+  +  L A C    + ++           T  
Sbjct: 120 EHDLVL-DCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQITVF 163

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 39.3 bits (91), Expect = 2e-04
 Identities = 8/32 (25%), Positives = 20/32 (62%)

Query: 87  VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ 118
           +V++G G +G   A ++++  +G ++L D  +
Sbjct: 6   IVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK 37

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 63  VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGR-LLLVDFDQ 118
           V EQL +N+       + K+S   + V+G+G VG   A  +L  G+   L LVD D 
Sbjct: 3   VKEQLIQNLV-----PEDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDADT 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	100.0
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	99.97
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.07
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.64
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.5
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.39
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.31
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.27
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.26
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.23
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.1
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.09
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.06
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.86
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.79
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.73
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.72
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.68
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.53
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.48
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.46
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.46
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	96.45
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.41
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.39
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.33
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	96.3
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.28
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.28
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.28
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.2
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.16
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	96.05
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.95
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	95.95
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.94
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	95.9
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.87
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	95.85
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	95.85
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	95.79
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.71
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.59
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	95.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.53
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	95.49
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.46
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	95.38
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	95.36
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.35
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	95.31
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.27
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.25
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.18
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.14
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.12
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	95.11
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	95.11
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.08
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.0
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.85
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	94.83
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.83
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.81
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.72
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.65
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.62
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.59
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.58
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.56
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	94.54
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.53
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.52
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	94.51
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.46
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.35
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.3
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.3
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.3
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.28
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	94.26
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.26
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.22
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.2
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	94.13
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.04
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.99
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.94
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	93.92
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.85
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.79
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.79
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.78
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	93.77
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.72
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.67
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.65
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.59
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	93.53
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.53
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	93.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.47
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.45
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.42
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	93.39
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.35
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.2
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	93.17
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	93.15
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	93.13
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.1
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	93.08
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.04
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	93.02
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	92.94
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	92.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.93
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.91
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	92.9
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	92.88
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	92.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	92.84
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	92.83
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.83
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	92.58
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.54
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	92.51
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	92.42
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.27
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.26
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	92.22
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	92.18
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	92.16
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.13
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.13
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.12
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.07
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	92.05
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	92.04
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.01
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.98
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.94
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	91.89
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	91.87
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.86
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	91.77
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.75
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.57
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.4
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	91.32
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.3
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.21
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	91.11
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.09
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.07
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.02
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.97
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.91
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	90.88
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.85
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	90.81
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.78
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.75
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.61
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	90.48
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	90.45
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.41
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.31
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.28
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	90.01
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.99
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.95
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	89.84
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	89.83
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	89.81
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.79
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	89.77
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	89.76
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.7
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	89.64
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	89.56
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	89.54
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.47
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	89.41
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	89.41
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.39
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.37
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	89.33
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.27
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.26
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	89.22
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	89.12
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	89.01
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.92
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	88.91
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.89
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.87
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	88.86
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	88.81
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.62
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.33
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	88.33
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.32
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	88.13
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	87.98
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	87.83
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.72
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	87.48
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	87.41
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	87.37
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.36
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	87.34
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.32
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	87.25
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	87.24
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	87.2
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.12
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	86.94
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.92
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	86.85
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	86.58
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.51
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.5
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.33
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	86.16
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	86.13
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.94
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.83
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	85.83
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	85.81
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	85.78
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	85.73
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	85.71
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	85.64
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	85.55
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	85.38
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.33
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	85.33
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	85.21
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	85.05
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	84.99
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.99
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	84.83
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	84.81
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.61
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.6
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	84.44
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	84.35
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.23
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.23
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	84.16
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	84.05
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.01
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	83.59
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	83.58
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	83.3
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	83.18
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.11
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	83.03
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	82.91
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	82.77
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.46
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	82.39
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	82.39
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	82.2
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	82.1
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.08
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	82.06
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	82.03
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	82.0
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	81.86
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.79
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	81.75
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	81.7
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.67
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	81.54
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	81.49
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	81.07
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	80.98
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	80.89
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	80.84

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.6e-44  Score=344.35  Aligned_cols=211  Identities=28%  Similarity=0.463  Sum_probs=181.6

Q ss_pred             ccchhHHHHHHhhhhHhh--cCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCC
Q 013180           56 DLLKDEVVAEQLTRNIQF--FGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRA  133 (448)
Q Consensus        56 ~~~~~e~~~e~~~Rq~~~--~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~  133 (448)
                      ++.++|+  +||+||+.+  ||.++|+||++++|+|+||||+||+++++|+++|||+|+|||+|.|++||||||++|+.+
T Consensus         2 ~l~~~e~--~ry~Rqi~l~~~g~~~Q~kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~   79 (247)
T d1jw9b_           2 ELSDQEM--LRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDA   79 (247)
T ss_dssp             CCCHHHH--HHTHHHHTSTTTHHHHHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGG
T ss_pred             CCCHHHH--HHhhceeccccCCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHh
Confidence            5678887  999999998  589999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCchHHHHHHHHHhhhCCCceEEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCcc
Q 013180          134 DVGTPKALCLKKHFSSIFPECHIDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARA  213 (448)
Q Consensus       134 dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~  213 (448)
                      |||++||++++++|+++||+++|+.+...++.++...++.. +|+||||+|++.++.+++++|+++++|+|+++..|   
T Consensus        80 diG~~K~~~a~~~l~~~np~~~i~~~~~~~~~~~~~~~~~~-~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~---  155 (247)
T d1jw9b_          80 TVGQPKVESARDALTRINPHIAITPVNALLDDAELAALIAE-HDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIR---  155 (247)
T ss_dssp             GTTSBHHHHHHHHHHHHCTTSEEEEECSCCCHHHHHHHHHT-SSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEB---
T ss_pred             hcCchHHHHHHHHHHHhhcccchhhhhhhhhhccccccccc-cceeeeccchhhhhhhHHHHHHHhCCCcccccccc---
Confidence            99999999999999999999999999999888888887775 99999999999999999999999999999987543   


Q ss_pred             CCCceEEcccccccCChhhHHHHHHHhhhcCccCCeeE-EeCCCCCcccCCCCCCCCCCCCCCCCCCccCCcccccCCcc
Q 013180          214 DPTRIRVADLRESTNDPLSRAVMHRLRKDYGIEGGIPV-VFSLEKPKAKLLPFTGPSGEDENPSDYQMVPGFRVRIIPVL  292 (448)
Q Consensus       214 dpt~i~i~di~~~~~dpl~~~~r~~l~~~~g~~g~i~~-v~s~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl  292 (448)
                                                     ..|++-+ .++..+||+.|+...... .           ..++...|++
T Consensus       156 -------------------------------~~g~~~~~~~~~~~~c~~c~~~~~~~-~-----------~~~~~~~g~~  192 (247)
T d1jw9b_         156 -------------------------------MEGQITVFTYQDGEPCYRCLSRLFGE-N-----------ALTCVEAGVM  192 (247)
T ss_dssp             -------------------------------TEEEEEEECCCTTCCCTHHHHTTCCC-------------------CCBC
T ss_pred             -------------------------------cccceEEEeecCCccccccccccccc-c-----------cCCcccCCcc
Confidence                                           3343333 345667888887221111 0           0123456899


Q ss_pred             cchHHHHHHHHHHHHHHHHHcCC
Q 013180          293 GSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       293 g~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                      +|.++++|+++|+|+|++|+|..
T Consensus       193 ~p~~~~v~~~~a~e~ik~l~g~~  215 (247)
T d1jw9b_         193 APLIGVIGSLQAMEAIKMLAGYG  215 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cccchhHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999975

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-36  Score=308.70  Aligned_cols=203  Identities=22%  Similarity=0.297  Sum_probs=166.7

Q ss_pred             HHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCce
Q 013180           76 VESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECH  155 (448)
Q Consensus        76 ~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~  155 (448)
                      +..|.+|+++||+||||||+||+++++|+++|||+|+|+|+|+|+.+|||||++|+.+|||++|+++++++++++||+++
T Consensus        29 e~~~~~l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~  108 (426)
T d1yovb1          29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCN  108 (426)
T ss_dssp             SHHHHHHHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCc
Confidence            34578899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHH------------HcCCcEEEEcCCCCccCCCceEEccc
Q 013180          156 IDAKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACV------------RRGLKVLCATGAGARADPTRIRVADL  223 (448)
Q Consensus       156 v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~------------~~~ip~I~~~g~G~k~dpt~i~i~di  223 (448)
                      |.++...+...+ .+++.+ +|+||+|+||+.+|.++|+.|.            +.++|+|+++.               
T Consensus       109 i~~~~~~i~~~~-~~~~~~-~DlVi~~~Dn~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~gg~---------------  171 (426)
T d1yovb1         109 VVPHFNKIQDFN-DTFYRQ-FHIIVCGLDSIIARRWINGMLISLLNYEDGVLDPSSIVPLIDGGT---------------  171 (426)
T ss_dssp             CEEECSCGGGBC-HHHHTT-CSEEEECCSCHHHHHHHHHHHHHTCCEETTEECGGGCCCEEEEEE---------------
T ss_pred             eEeeeccccchH-HHHHHh-cchheeccCcHHHHHHHHHHHHHhhcccccccccccCCceEEeEE---------------
Confidence            999998876655 456665 9999999999999999999997            45789999875               


Q ss_pred             ccccCChhhHHHHHHHhhhcCccCCeeEEeCCCCCcccCCCCCCCCCCCCCCC---------------------------
Q 013180          224 RESTNDPLSRAVMHRLRKDYGIEGGIPVVFSLEKPKAKLLPFTGPSGEDENPS---------------------------  276 (448)
Q Consensus       224 ~~~~~dpl~~~~r~~l~~~~g~~g~i~~v~s~e~p~~~~~~~~~~~~~~~~~~---------------------------  276 (448)
                                         .|+.|++.++++..+||+.|..-..+ .++.-|.                           
T Consensus       172 -------------------~G~~G~~~vi~p~~t~Cy~C~~~~~p-~~~~~p~CTi~~~P~~~~hci~~ak~l~~~~~~~  231 (426)
T d1yovb1         172 -------------------EGFKGNARVILPGMTACIECTLELYP-PQVNFPMCTIASMPRLPEHCIEYVRMLQWPKEQP  231 (426)
T ss_dssp             -------------------ETTEEEEEEECTTTSCCGGGGGGGSC-CCCCCCHHHHHHCCCSHHHHHHHHHHTHHHHSCT
T ss_pred             -------------------eeeEEEEEEECCCCCCCcCcCCCCCC-CCCCCCcccccCCCCCchheeehhhhhccccccc
Confidence                               45667777788888889888611100 0111110                           


Q ss_pred             -------C---------------------------CCccCCcccccCCcccchHHHHHHHHHHHHHHHHHcCC
Q 013180          277 -------D---------------------------YQMVPGFRVRIIPVLGSIPAIFGMVMASHVVTQLAERQ  315 (448)
Q Consensus       277 -------~---------------------------~~~~~~~~~~~~pvlg~~~~i~G~~~A~~vi~~l~g~~  315 (448)
                             +                           +....++.-.++|.+++++||+|+++|+|+||.|++..
T Consensus       232 ~~~~~~~d~dd~~~i~~i~~~a~~ra~~~~I~~~~~~~~k~ia~nIIPaiatTnAIVagl~~~E~iK~lt~~~  304 (426)
T d1yovb1         232 FGEGVPLDGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFKIATSAY  304 (426)
T ss_dssp             TSTTCCCCTTCHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhcCC
Confidence                   0                           00011122347799999999999999999999999965

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-32  Score=286.45  Aligned_cols=148  Identities=14%  Similarity=0.191  Sum_probs=134.7

Q ss_pred             HHHHhhhhHhhcCHHHHHHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHH
Q 013180           63 VAEQLTRNIQFFGVESQQKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALC  142 (448)
Q Consensus        63 ~~e~~~Rq~~~~G~~~q~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~  142 (448)
                      -++||+||+++||.++|++|++++|+|||+||+||+++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++
T Consensus         4 ke~rYdRQlrlwG~~gQ~~L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~   83 (529)
T d1yova1           4 KEQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEA   83 (529)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHH
T ss_pred             hhhhhhHHHHhhhHHHHHHHhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhCCCceEEEEeccCCc--cchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          143 LKKHFSSIFPECHIDAKVLLYDA--SSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       143 ~~~~l~~inP~v~v~~~~~~~~~--~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ++++|+++||+++++.+......  ++..+++.+ +|+||+|.|+.+++..++++|+++++|+|+++..|.
T Consensus        84 ~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~-~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G~  153 (529)
T d1yova1          84 AMEFLQELNSDVSGSFVEESPENLLDNDPSFFCR-FTVVVATQLPESTSLRLADVLWNSQIPLLICRTYGL  153 (529)
T ss_dssp             HHHHHHTTCTTSBCCEESSCHHHHHHSCGGGGGG-CSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             HHHHHHHhCCCCcEEEEcCCchhhhhhHHHHhcC-CCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence            99999999999999887654332  223355664 999999999999999999999999999999876443

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.07  E-value=1.4e-05  Score=65.29  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=69.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||.|.+|..-++.|..+|. ++++++.+.-                     +.....+.  ..  .++...
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~---------------------~~~~~~~~--~~--~i~~~~   62 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFI---------------------PQFTVWAN--EG--MLTLVE   62 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCC---------------------HHHHHHHT--TT--SCEEEE
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC---------------------hHHHHHHh--cC--Cceeec
Confidence            4789999999999999999999999996 5999886532                     11112221  12  344444


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      ..+.++.    +.+ +++|+.|+++......+.+.|+++++|+=.
T Consensus        63 ~~~~~~d----l~~-~~lv~~at~d~~~n~~i~~~a~~~~ilVNv  102 (113)
T d1pjqa1          63 GPFDETL----LDS-CWLAIAATDDDTVNQRVSDAAESRRIFCNV  102 (113)
T ss_dssp             SSCCGGG----GTT-CSEEEECCSCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCCHHH----hCC-CcEEeecCCCHHHHHHHHHHHHHcCCEEEe
Confidence            5555432    343 999999999999999999999999998643

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=3.9e-05  Score=67.73  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|+|+|+||.|..++..|...|+.+|+|++.+.   +             -..|+..+.+++..-.+.. +... 
T Consensus        15 ~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~---~-------------~~~~~~~l~~~~~~~~~~~-~~~~-   76 (182)
T d1vi2a1          15 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD---E-------------FFDKALAFAQRVNENTDCV-VTVT-   76 (182)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS---T-------------THHHHHHHHHHHHHHSSCE-EEEE-
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccch---H-------------HHHHHHHHHHHHHhhcCcc-eEee-
Confidence            47889999999999999999999999999999976531   0             1134555566666555432 2221 


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      ...+.+...+.+.. +|+||+|+.
T Consensus        77 ~~~~~~~~~~~~~~-~diiIN~Tp   99 (182)
T d1vi2a1          77 DLADQQAFAEALAS-ADILTNGTK   99 (182)
T ss_dssp             ETTCHHHHHHHHHT-CSEEEECSS
T ss_pred             ecccccchhhhhcc-cceeccccC
Confidence            22222334444554 999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.50  E-value=0.00037  Score=60.20  Aligned_cols=92  Identities=21%  Similarity=0.265  Sum_probs=65.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|+|||+|++|..++++|...|++++++          .||..         .|++.+++.+.     .++    
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v----------~nRt~---------~ka~~l~~~~~-----~~~----   72 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLV----------ANRTY---------ERAVELARDLG-----GEA----   72 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEE----------ECSSH---------HHHHHHHHHHT-----CEE----
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEE----------EcCcH---------HHHHHHHHhhh-----ccc----
Confidence            579999999999999999999999999999999          45652         47766666542     222    


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHH---HHHHHHHHHHHc--CCcE
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNID---TKVALLAACVRR--GLKV  203 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~---~r~~l~~~c~~~--~ip~  203 (448)
                        .+-+...+.+.. +|+||.|+....   .+..+-....++  +.|+
T Consensus        73 --~~~~~~~~~l~~-~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~  117 (159)
T d1gpja2          73 --VRFDELVDHLAR-SDVVVSATAAPHPVIHVDDVREALRKRDRRSPI  117 (159)
T ss_dssp             --CCGGGHHHHHHT-CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCE
T ss_pred             --ccchhHHHHhcc-CCEEEEecCCCCccccHhhhHHHHHhcccCCCe
Confidence              122344556664 999999997543   345555555443  4664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=2.3e-05  Score=67.01  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=67.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc-CCCcccccccCCccCchHHHHHHHHHhhhCC---CceE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV-SSLNRHAVATRADVGTPKALCLKKHFSSIFP---ECHI  156 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~-sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP---~v~v  156 (448)
                      +|++++|+|||.|.+|..-+..|..+|. ++++|+++.-+. ..+..+....  .......+.-...+.....   .-.+
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSPDLHKSIIPKFGKFIQN--KDQPDYREDAKRFINPNWDPTKNEIY   86 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEEEECTTHHHHHCGGGC-------------CEEECTTCCTTSCCCS
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCHHHHHHHHhccch--hhhhhhhhhhhhhcchhhhhccccce
Confidence            5889999999999999999999999995 799998663221 1111110000  0000000000000000000   0123


Q ss_pred             EEEeccCCccchH--HHhcCCCCeEEEccCCHHHHHHHHHHHHHc---CCcEE
Q 013180          157 DAKVLLYDASSEE--EILSGHPDFVLDCIDNIDTKVALLAACVRR---GLKVL  204 (448)
Q Consensus       157 ~~~~~~~~~~~~~--~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~---~ip~I  204 (448)
                      +.+...+..+...  ..+. .+++|+.|+++.+....|.+.|++.   ++|+=
T Consensus        87 ~~i~~~~~~~~l~~~~~~~-~~~lVi~at~d~~~n~~i~~~a~~~~~~~i~VN  138 (150)
T d1kyqa1          87 EYIRSDFKDEYLDLENEND-AWYIIMTCIPDHPESARIYHLCKERFGKQQLVN  138 (150)
T ss_dssp             EEECSSCCGGGGCCSSTTC-CEEEEEECCSCHHHHHHHHHHHHHHHCTTSEEE
T ss_pred             EEEecccchhhhccccccc-ceEEEEeecCCHHHHHHHHHHHHHhccCCCEEE
Confidence            3333444443321  1123 3899999999999999999999874   66653

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=0.00022  Score=61.97  Aligned_cols=75  Identities=24%  Similarity=0.314  Sum_probs=53.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|+|+|+||.+..++..|...|+ +|+|+          ||..         .|++.+.+.+.+.++   +....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~----------nRt~---------~ka~~l~~~~~~~~~---~~~~~   71 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDC-AVTIT----------NRTV---------SRAEELAKLFAHTGS---IQALS   71 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEE----------CSSH---------HHHHHHHHHTGGGSS---EEECC
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccce-EEEec----------cchH---------HHHHHHHHHHhhccc---ccccc
Confidence            3568999999999999999999999998 59994          5653         577888887776653   32221


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                        ++     +....++|+||+||--
T Consensus        72 --~~-----~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          72 --MD-----ELEGHEFDLIINATSS   89 (170)
T ss_dssp             --SG-----GGTTCCCSEEEECCSC
T ss_pred             --cc-----cccccccceeeccccc
Confidence              11     1112359999999754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.27  E-value=0.00016  Score=62.84  Aligned_cols=32  Identities=28%  Similarity=0.447  Sum_probs=30.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      ++++|+|+|+||.|..++..|...|+++|+|+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~   47 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIY   47 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence            58899999999999999999999999999994

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.26  E-value=0.00026  Score=60.38  Aligned_cols=96  Identities=16%  Similarity=0.179  Sum_probs=63.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .++|+|+|+|.+|+.+|++|+..|. +++++|.+.                   .|++.++    +-.+...+.. ....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~-------------------~~a~~l~----~~~~~~~~~~-~~~~   56 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTL-------------------ESAKKLS----AGVQHSTPIS-LDVN   56 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCH-------------------HHHHHHH----TTCTTEEEEE-CCTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCh-------------------HHHHHHH----hccccccccc-cccc
Confidence            6899999999999999999999998 699977652                   2443333    3333332322 1112


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      ........+.. .|+++.++... ....+...|.+.+..+++.
T Consensus        57 ~~~~~~~~i~~-~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~   97 (182)
T d1e5qa1          57 DDAALDAEVAK-HDLVISLIPYT-FHATVIKSAIRQKKHVVTT   97 (182)
T ss_dssp             CHHHHHHHHTT-SSEEEECSCGG-GHHHHHHHHHHHTCEEECS
T ss_pred             chhhhHhhhhc-cceeEeeccch-hhhHHHHHHHhhccceeec
Confidence            22334444554 89888887654 4456667888888877763

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.23  E-value=0.00071  Score=55.98  Aligned_cols=95  Identities=16%  Similarity=0.177  Sum_probs=64.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc-C
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-Y  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~-~  163 (448)
                      .+|+|+|+|.+|..+++.|...|. .+++||.|.                   .+++-++++    . .  +.++... .
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~-------------------~~~~~~~~~----~-~--~~vi~Gd~~   53 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDK-------------------DICKKASAE----I-D--ALVINGDCT   53 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHHHH----C-S--SEEEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-CcceecCCh-------------------hhhhhhhhh----h-h--hhhccCccc
Confidence            379999999999999999999995 589998862                   122222221    1 1  2233332 2


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      +++...+.--.++|.++.++++.+....+...++..+.+-+.+
T Consensus        54 ~~~~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          54 KIKTLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             SHHHHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             chhhhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            3333444323459999999999888888888888888875443

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00048  Score=53.81  Aligned_cols=90  Identities=20%  Similarity=0.275  Sum_probs=57.8

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++++|+|+|+|..|-.+|++|.+.| .++++.|...-.. .  +.                     .+.....+..  .
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g-~~v~~~D~~~~~~-~--~~---------------------~~~~~~~~~~--~   55 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARG-VTPRVMDTRMTPP-G--LD---------------------KLPEAVERHT--G   55 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTT-CCCEEEESSSSCT-T--GG---------------------GSCTTSCEEE--S
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCC-CEEEEeeCCcCch-h--HH---------------------HHhhccceee--c
Confidence            68999999999999999999999999 4588888632111 0  00                     1111222221  1


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      ...    ...+.+ +|+||-... +....-+.+.++++|+|+|
T Consensus        56 ~~~----~~~~~~-~d~vi~SPG-i~~~~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          56 SLN----DEWLMA-ADLIVASPG-IALAHPSLSAAADAGIEIV   92 (93)
T ss_dssp             BCC----HHHHHH-CSEEEECTT-SCTTSHHHHHHHHTTCEEE
T ss_pred             ccc----hhhhcc-CCEEEECCC-CCCCCHHHHHHHHcCCCeE
Confidence            111    223333 899997665 3334457778889999987

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.09  E-value=0.0033  Score=51.50  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=59.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ++++|+|+|-+|..+++.|.+.|. .+++||.|.=....+                       ++..  ..+ .+....+
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~-----------------------~~~~--~~~-~~gd~~~   53 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAY-----------------------ASYA--THA-VIANATE   53 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHT-----------------------TTTC--SEE-EECCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHH-----------------------HHhC--Ccc-eeeeccc
Confidence            579999999999999999999996 588888874322211                       1111  111 1112223


Q ss_pred             ccchHHHhcCCCCeEEEccCC-HHHHHHHHHHHHHcCCcEEEEc
Q 013180          165 ASSEEEILSGHPDFVLDCIDN-IDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn-~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      ++...+.--.++|.||.++++ ......+...++.++.+-|.+.
T Consensus        54 ~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          54 ENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             TTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             chhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEee
Confidence            344444422348988888765 4555555666677777766554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.06  E-value=0.00033  Score=60.23  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=31.5

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +..||.|||+|.||+.+|..|+..|+.++.|+|-
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~   39 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDV   39 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEe
Confidence            4689999999999999999999999999999883

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.0018  Score=55.62  Aligned_cols=96  Identities=20%  Similarity=0.255  Sum_probs=61.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+|++|..++..+...|..++.++|.+.                   .|.+.++    ++-.+..+.  ...-
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~-------------------~rl~~a~----~~Ga~~~~~--~~~~   81 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA-------------------TRLSKAK----EIGADLVLQ--ISKE   81 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH-------------------HHHHHHH----HTTCSEEEE--CSSC
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH-------------------HHHHHHH----HhCCccccc--cccc
Confidence            57899999999999999999999999999988552                   2333222    222211111  1111


Q ss_pred             Cccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          164 DASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       164 ~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      +....    .......+|+||||+.+..+.....++++..|.-++
T Consensus        82 ~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~  126 (171)
T d1pl8a2          82 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVL  126 (171)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEE
Confidence            11111    111233599999999998887777777776665443

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.002  Score=59.39  Aligned_cols=68  Identities=15%  Similarity=0.127  Sum_probs=54.9

Q ss_pred             HHHHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           78 SQQKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      +|++|+++.|+|.|+ +|+|.++|+.|++.|. ++.+.|.+                   ..|.+.+++.+++.++..++
T Consensus         4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~   63 (257)
T d1xg5a_           4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCART-------------------VGNIEELAAECKSAGYPGTL   63 (257)
T ss_dssp             TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCSSEE
T ss_pred             CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            577899999999976 6999999999999997 57776543                   35788888999998887788


Q ss_pred             EEEeccCCc
Q 013180          157 DAKVLLYDA  165 (448)
Q Consensus       157 ~~~~~~~~~  165 (448)
                      ..+...++.
T Consensus        64 ~~~~~Dls~   72 (257)
T d1xg5a_          64 IPYRCDLSN   72 (257)
T ss_dssp             EEEECCTTC
T ss_pred             EEEEccCCC
Confidence            777655543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.84  E-value=0.0024  Score=54.49  Aligned_cols=98  Identities=17%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|+|+|++|..++..+...|. ++..+|.+.                   .|.+.++    ++..+..+......
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~-------------------~r~~~a~----~~ga~~~~~~~~~~   81 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSP-------------------RRLEVAK----NCGADVTLVVDPAK   81 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCH-------------------HHHHHHH----HTTCSEEEECCTTT
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcc-cccccchHH-------------------HHHHHHH----HcCCcEEEeccccc
Confidence            36799999999999999999999997 688877542                   2333332    23322222111111


Q ss_pred             CCccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          163 YDASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       163 ~~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      .+....    .+.....+|+||||+.+..+.....+.++..|.-++
T Consensus        82 ~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2          82 EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLML  127 (170)
T ss_dssp             SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEE
T ss_pred             cccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEE
Confidence            111111    112234599999999999887777788877776333

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.79  E-value=0.00093  Score=57.46  Aligned_cols=101  Identities=20%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHH--HhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKH--FSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~--l~~inP~v~v~~~~~  161 (448)
                      +++|.|+|+|.+|+.+|..|++.|. ++.++|.+.                   .|++.+++.  .....|..+......
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   60 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDA-------------------QRIKEIQDRGAIIAEGPGLAGTAHPD   60 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH-------------------HHHHHHHHHTSEEEESSSCCEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCC-EEEEEECCH-------------------HHHHHHHHcCCCchhhhhhhhhhhhh
Confidence            5899999999999999999999996 688877653                   122222221  111223333333222


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEE
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCA  206 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~  206 (448)
                      ..+ .+..+.+.+ +|+||.|+.....+..+.++...  .+..++..
T Consensus        61 ~~~-~~~~e~~~~-aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          61 LLT-SDIGLAVKD-ADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             EEE-SCHHHHHTT-CSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             hhh-hhhHhHhcC-CCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence            222 234566665 99999999988877766655432  24445543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.73  E-value=0.00047  Score=60.15  Aligned_cols=98  Identities=21%  Similarity=0.101  Sum_probs=60.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|+|+||+|..++..+...|..++..+|.+.                   .|.+.++    ++...--|+...+.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~-------------------~r~~~a~----~lGa~~~i~~~~~~   83 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRP-------------------ICVEAAK----FYGATDILNYKNGH   83 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCH-------------------HHHHHHH----HHTCSEEECGGGSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchh-------------------hhHHHHH----hhCccccccccchh
Confidence            467899999999999999999999999999987652                   2322222    22211111110000


Q ss_pred             CCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          163 YDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       163 ~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      + .+...++.. ..+|+||||+.+..+-....++++..+.-++
T Consensus        84 ~-~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~  125 (174)
T d1jqba2          84 I-EDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISN  125 (174)
T ss_dssp             H-HHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEE
T ss_pred             H-HHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEE
Confidence            0 111222222 2399999999998876666677766665444

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.72  E-value=0.00098  Score=57.98  Aligned_cols=75  Identities=23%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|+|+|+||.+-.++..|.. |..+|+|          +||..         .|++.+++.+....+   +....
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~-~~~~i~I----------~nR~~---------~~a~~l~~~~~~~~~---~~~~~   71 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQ-AQQNIVL----------ANRTF---------SKTKELAERFQPYGN---IQAVS   71 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHH-TTCEEEE----------EESSH---------HHHHHHHHHHGGGSC---EEEEE
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcc-cCceeee----------ccchH---------HHHHHHHHHHhhccc---cchhh
Confidence            4678999999999999999999986 6689999          46653         578888888876543   43333


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      ..       +....++|+||+|+.-
T Consensus        72 ~~-------~~~~~~~diiIN~tp~   89 (171)
T d1p77a1          72 MD-------SIPLQTYDLVINATSA   89 (171)
T ss_dssp             GG-------GCCCSCCSEEEECCCC
T ss_pred             hc-------cccccccceeeecccc
Confidence            21       1111259999999764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0084  Score=52.49  Aligned_cols=105  Identities=21%  Similarity=0.236  Sum_probs=65.3

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .-+||+|.|+ |.+|++++..|...|. ++++++.+.-.....                         ..+.+++  +..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~-------------------------~~~~~~~--~~g   53 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSE-------------------------GPRPAHV--VVG   53 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSS-------------------------SCCCSEE--EES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccc-------------------------ccccccc--ccc
Confidence            3578999995 8899999999999996 688876542221110                         0123333  223


Q ss_pred             cC-CccchHHHhcCCCCeEEEccCC----------HHHHHHHHHHHHHcCCc-EEEEcCCCCccCCC
Q 013180          162 LY-DASSEEEILSGHPDFVLDCIDN----------IDTKVALLAACVRRGLK-VLCATGAGARADPT  216 (448)
Q Consensus       162 ~~-~~~~~~~ll~~~~D~VIda~Dn----------~~~r~~l~~~c~~~~ip-~I~~~g~G~k~dpt  216 (448)
                      .+ +.+...+.+.+ +|+||.|...          ...-..+.+++++++++ +|..++.+...+|.
T Consensus        54 D~~d~~~l~~al~~-~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~  119 (205)
T d1hdoa_          54 DVLQAADVDKTVAG-QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT  119 (205)
T ss_dssp             CTTSHHHHHHHHTT-CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTT
T ss_pred             cccchhhHHHHhcC-CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCc
Confidence            32 33445566765 8999988742          12233567788888876 56555555444443

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.53  E-value=0.00075  Score=58.83  Aligned_cols=79  Identities=20%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++++++|+|+|+||++..++..|.  +.++|+|          .||..         .|++.+.+.+....+...+....
T Consensus        15 ~~~~k~vlIlGaGG~arai~~aL~--~~~~i~I----------~nR~~---------~ka~~l~~~~~~~~~~~~~~~~~   73 (177)
T d1nvta1          15 RVKDKNIVIYGAGGAARAVAFELA--KDNNIII----------ANRTV---------EKAEALAKEIAEKLNKKFGEEVK   73 (177)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHT--SSSEEEE----------ECSSH---------HHHHHHHHHHHHHHTCCHHHHEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHc--cccceee----------ehhhh---------hHHHHHHHHHHHhhchhhhhhhh
Confidence            589999999999999999998884  5679999          56643         47888887777654332111100


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                          -........ .+|+||+|+.-
T Consensus        74 ----~~~~~~~~~-~~dliIn~tp~   93 (177)
T d1nvta1          74 ----FSGLDVDLD-GVDIIINATPI   93 (177)
T ss_dssp             ----EECTTCCCT-TCCEEEECSCT
T ss_pred             ----hhhhhhccc-hhhhhccCCcc
Confidence                011111222 48999988753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.48  E-value=0.0029  Score=54.08  Aligned_cols=113  Identities=26%  Similarity=0.351  Sum_probs=67.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ++|.+||+|-.|+.+|++|+++|. ++.+.|.+.-....+.-        .|........+.+    ..+++....-. +
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~--------~~~~~~~~~~e~~----~~~diii~~v~-~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVA--------AGASAARSARDAV----QGADVVISMLP-A   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH--------TTCEECSSHHHHH----TSCSEEEECCS-C
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhh--------hhccccchhhhhc----cccCeeeeccc-c
Confidence            369999999999999999999997 58887755322221111        1111111112222    22333322211 1


Q ss_pred             ccchHHHhc---------CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          165 ASSEEEILS---------GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       165 ~~~~~~ll~---------~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .....+.+.         .+-++|||++. +++....+.+.+.++|+.++++.-.|+
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg  124 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGG  124 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESC
T ss_pred             hhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccC
Confidence            111122211         12478998886 577788999999999999999766554

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0037  Score=52.60  Aligned_cols=94  Identities=16%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      .||+|+|+|.+|+.++..|+++|. .++++|.+.-....++.                       ...........  +.
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~-----------------------~~~~~~~~~~~--~~   54 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL-----------------------VETDGSIFNES--LT   54 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE-----------------------ECTTSCEEEEE--EE
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc-----------------------ccCCccccccc--cc
Confidence            479999999999999999999996 69999876533222211                       01111111111  11


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH--cCCcEEEE
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR--RGLKVLCA  206 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~--~~ip~I~~  206 (448)
                      ... .+.+. .+|+||.|+-...+...+......  .+.++++.
T Consensus        55 ~~~-~~~~~-~~D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          55 AND-PDFLA-TSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             ESC-HHHHH-TCSEEEECSCGGGHHHHHHHHHTTSCTTSCEEEE
T ss_pred             cch-hhhhc-ccceEEEeecccchHHHHHhhccccCcccEEeec
Confidence            112 23334 399999999998888777666543  35556664

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.46  E-value=0.0064  Score=51.30  Aligned_cols=75  Identities=24%  Similarity=0.347  Sum_probs=49.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +||.|||+ |.||+.+|..|+..|. .+|.|+|-+.                   .|.++  .-+....+.......   
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~-------------------~~~~a--~Dl~~~~~~~~~~~~---   56 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH-------------------TPGVA--ADLSHIETRATVKGY---   56 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS-------------------HHHHH--HHHTTSSSSCEEEEE---
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccc-------------------cchhh--HHHhhhhhhcCCCeE---
Confidence            68999996 9999999999999997 8999988431                   13333  334444444433332   


Q ss_pred             CCccchHHHhcCCCCeEEEccC
Q 013180          163 YDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      +...+..+.+.+ .|+||-+..
T Consensus        57 ~~~~~~~~~~~~-aDivVitag   77 (144)
T d1mlda1          57 LGPEQLPDCLKG-CDVVVIPAG   77 (144)
T ss_dssp             ESGGGHHHHHTT-CSEEEECCS
T ss_pred             EcCCChHHHhCC-CCEEEECCC
Confidence            233344455555 999986543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.45  E-value=0.0024  Score=54.17  Aligned_cols=36  Identities=36%  Similarity=0.600  Sum_probs=31.3

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      -.++||.|||+|.||+.+|..|+..|. .+|.|+|-+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            356799999999999999999999996 579998844

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.41  E-value=0.0038  Score=53.82  Aligned_cols=37  Identities=32%  Similarity=0.495  Sum_probs=32.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .+.+.||.|||+|.||+.+|..|+..|. .+|.|+|-+
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            4567899999999999999999999996 679998765

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.02  Score=47.64  Aligned_cols=33  Identities=21%  Similarity=0.396  Sum_probs=26.9

Q ss_pred             CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          174 GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       174 ~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .++|+|||-+ +++.-....++|.++++|+|.+.
T Consensus        43 ~~~DvvIDFS-~p~~~~~~~~~~~~~~~~~ViGT   75 (135)
T d1yl7a1          43 GNTEVVIDFT-HPDVVMGNLEFLIDNGIHAVVGT   75 (135)
T ss_dssp             TTCSEEEECC-CTTTHHHHHHHHHHTTCEEEECC
T ss_pred             ccCCEEEEcc-cHHHHHHHHHHHHhcCCCEEEec
Confidence            3599999988 45666777889999999999843

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.33  E-value=0.001  Score=57.80  Aligned_cols=122  Identities=10%  Similarity=0.098  Sum_probs=70.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .++|.|||+|-.|+.+|.+|++.|. ++.++|.+.=....+..+..-.....|...++.+.+    ....+.+...... 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~ii~~~~-   75 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS----KLKKPRRIILLVK-   75 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH----HBCSSCEEEECSC-
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhccccccccchhhhhhhhh----hhcccceEEEecC-
Confidence            5789999999999999999999997 577877554222222222111111223333332222    2222333222111 


Q ss_pred             Cccch----HHHhc--CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          164 DASSE----EEILS--GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       164 ~~~~~----~~ll~--~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +.+..    ..++.  .+-++|||++. ++.....+.+.+.+.++.++++...|+
T Consensus        76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg  130 (176)
T d2pgda2          76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG  130 (176)
T ss_dssp             TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred             chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccC
Confidence            11111    12211  12578888865 566667888899999999999776654

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.31  E-value=0.004  Score=54.03  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=60.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +..|+|+|+||+|...+..+...|..+|..+|.+.                   .|.+.+++.    --.--|...+...
T Consensus        30 g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~-------------------~kl~~Ak~~----GA~~~in~~~~~~   86 (176)
T d1d1ta2          30 GSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK-------------------DKFEKAMAV----GATECISPKDSTK   86 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-------------------GGHHHHHHH----TCSEEECGGGCSS
T ss_pred             CCEEEEECCCchhHHHHHHHHHcCCceEEEecCcH-------------------HHHHHHHhc----CCcEEECccccch
Confidence            56799999999999999999999999999988652                   233333322    1111121111111


Q ss_pred             CccchHH-HhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          164 DASSEEE-ILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       164 ~~~~~~~-ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      ..+...+ .....+|+||+|+.+..+.......+.+.+-.++.
T Consensus        87 ~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~  129 (176)
T d1d1ta2          87 PISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVV  129 (176)
T ss_dssp             CHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEE
T ss_pred             HHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEE
Confidence            1111111 22335999999999988776655555544333444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=96.30  E-value=0.0043  Score=52.56  Aligned_cols=34  Identities=29%  Similarity=0.546  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D  117 (448)
                      .+||.|||+|.||+.+|..|+..| +.+|.|+|-+
T Consensus         1 ~kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            378999999999999999999998 4688888743

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.28  E-value=0.002  Score=54.97  Aligned_cols=33  Identities=24%  Similarity=0.588  Sum_probs=30.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++||.|||+|.||+.+|..|++.++.+|.|+|-
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di   35 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDI   35 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            479999999999999999999999999999883

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.28  E-value=0.003  Score=54.89  Aligned_cols=98  Identities=26%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc-
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL-  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~-  162 (448)
                      +.+|+|+|+||+|...+..+-..|..++.++|.+.-                   |.+.++    ++....-+...... 
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~-------------------r~~~a~----~~Ga~~~i~~~~~~~   85 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGE-------------------KFPKAK----ALGATDCLNPRELDK   85 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGG-------------------GHHHHH----HTTCSEEECGGGCSS
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchH-------------------HHHHHH----HhCCCcccCCccchh
Confidence            478999999999999999999999999999876532                   222222    22211111110000 


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVL  204 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I  204 (448)
                      ...........+.+|+||||+.+..+-....+..+. .|.-++
T Consensus        86 ~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~  128 (174)
T d1e3ia2          86 PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTV  128 (174)
T ss_dssp             CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEe
Confidence            001111222334599999999998876555555554 344333

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.28  E-value=0.002  Score=55.94  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...+|+|+|+|++|..++..+-..|..++.++|.+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~   62 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGS   62 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccc
Confidence            35789999999999999999999999999998764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.20  E-value=0.0031  Score=54.42  Aligned_cols=95  Identities=20%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .+.+|+|+|+|++|..++..+...|..++.++|.+.                   .|.+.+++    +.- .++  ++..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~-------------------~k~~~a~~----~Ga-~~~--i~~~   81 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVE-------------------SRLELAKQ----LGA-THV--INSK   81 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCH-------------------HHHHHHHH----HTC-SEE--EETT
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHH-------------------HHHHHHHH----cCC-eEE--EeCC
Confidence            467899999999999999999999999999876432                   23333332    221 111  1111


Q ss_pred             CCccc---hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          163 YDASS---EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       163 ~~~~~---~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                       +++.   ..++..+.+|+||||+.+.++.....+..+..|.-++
T Consensus        82 -~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~  125 (174)
T d1f8fa2          82 -TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAV  125 (174)
T ss_dssp             -TSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEE
T ss_pred             -CcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEE
Confidence             1111   2233344599999999998877766666666665443

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.16  E-value=0.0031  Score=54.30  Aligned_cols=97  Identities=26%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +.+|+|+|+||+|..++..+...|..++..+|.+.                   .|.+.+++.    --. .  .+...-
T Consensus        29 GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~-------------------~k~~~a~~~----Ga~-~--~i~~~~   82 (176)
T d2jhfa2          29 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINK-------------------DKFAKAKEV----GAT-E--CVNPQD   82 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG-------------------GGHHHHHHT----TCS-E--EECGGG
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcH-------------------HHHHHHHHh----CCe-e--EEecCC
Confidence            46899999999999999999999999999977652                   233322222    111 1  111111


Q ss_pred             Cccch----HHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSE----EEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~----~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      .++..    .....+.+|+||||+....+.......++..+.-++..
T Consensus        83 ~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          83 YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             chhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEe
Confidence            11111    12223359999999999888776667776655544443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=96.05  E-value=0.0036  Score=55.92  Aligned_cols=37  Identities=38%  Similarity=0.627  Sum_probs=33.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .|++++|+|-|+|.||+++|+.|...| .++.+.|.|.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~G-akvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAG-AQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTT-CEEEEECSCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCC-CEEEEecchH
Confidence            589999999999999999999999999 6688888764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.95  E-value=0.0094  Score=51.41  Aligned_cols=99  Identities=24%  Similarity=0.283  Sum_probs=60.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ...+|+|+|+||+|..++..+...|..++..+|.+.                   .|.+.+++    +-..--|+.....
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~-------------------~kl~~a~~----lGa~~~i~~~~~d   83 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHK-------------------DKFPKAIE----LGATECLNPKDYD   83 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCG-------------------GGHHHHHH----TTCSEEECGGGCS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChH-------------------HHHHHHHH----cCCcEEEcCCCch
Confidence            356799999999999999999999999999988652                   23333322    2111111110000


Q ss_pred             CCccch-HHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEE
Q 013180          163 YDASSE-EEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVL  204 (448)
Q Consensus       163 ~~~~~~-~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I  204 (448)
                      ...+.. ...-.+.+|+||||+.+..+.......+++. |+-++
T Consensus        84 ~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~  127 (174)
T d1p0fa2          84 KPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVV  127 (174)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEE
T ss_pred             hHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEE
Confidence            000111 1122235999999999988777766666553 44343

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0016  Score=56.26  Aligned_cols=39  Identities=38%  Similarity=0.610  Sum_probs=33.6

Q ss_pred             HHHhhCCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           79 QQKVSGSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        79 q~kL~~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      +.+++..||.|||+|.||+.+|..|+..|.. +|.|+|.+
T Consensus        14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          14 EDKLSRCKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CCCCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             cccCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            4467888999999999999999999999975 69998754

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.94  E-value=0.0034  Score=53.91  Aligned_cols=35  Identities=17%  Similarity=0.340  Sum_probs=32.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+||+|||+|-.|..+|.+|++.|...++|+|..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEec
Confidence            46899999999999999999999999889998854

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=95.90  E-value=0.0038  Score=52.91  Aligned_cols=35  Identities=31%  Similarity=0.503  Sum_probs=31.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ++.||.|||+|.||+.+|..|+..|. .+|.|+|-|
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~   39 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence            46799999999999999999999995 689999855

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.87  E-value=0.0089  Score=50.35  Aligned_cols=33  Identities=33%  Similarity=0.520  Sum_probs=29.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .||.|||+|.||+.+|..|+..|. .+|.|+|-+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            589999999999999999999997 578888743

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.85  E-value=0.015  Score=50.75  Aligned_cols=82  Identities=27%  Similarity=0.364  Sum_probs=53.5

Q ss_pred             HHHhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           79 QQKVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        79 q~kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ..-|++++|+|.| .||+|..+++.|++.|. ++.++|.+.                   .|.+.+++.+.+.. .+.+.
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~-------------------~~~~~~~~~~~~~~-~~~~~   76 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKL-------------------DKAQAAADSVNKRF-KVNVT   76 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSH-------------------HHHHHHHHHHHHHH-TCCCE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccch-------------------HHHHHHHHHHHhcc-chhhh
Confidence            3468999999999 59999999999999995 688866542                   34445555554432 22322


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEcc
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCI  183 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~  183 (448)
                      ..+ .-+.+...+.+.+ .|+||.|.
T Consensus        77 ~~d-~~~~~~~~~~~~~-iDilin~A  100 (191)
T d1luaa1          77 AAE-TADDASRAEAVKG-AHFVFTAG  100 (191)
T ss_dssp             EEE-CCSHHHHHHHTTT-CSEEEECC
T ss_pred             hhh-cccHHHHHHHhcC-cCeeeecC
Confidence            211 1233455666664 89888764

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=95.85  E-value=0.0043  Score=52.19  Aligned_cols=33  Identities=33%  Similarity=0.505  Sum_probs=30.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||.|||+|.||+.+|..|+..|+.++.|+|.+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~   34 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIV   34 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeec
Confidence            589999999999999999999999999998754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=95.79  E-value=0.028  Score=47.61  Aligned_cols=90  Identities=17%  Similarity=0.167  Sum_probs=57.1

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSH-AAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~-va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      -||.|||||+.|.. .+..|...+--.+.++|.+.                   .+++.+++.+    +...      .+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~-------------------~~~~~~~~~~----~~~~------~~   52 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNP-------------------KVLGTLATRY----RVSA------TC   52 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCH-------------------HHHHHHHHHT----TCCC------CC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCH-------------------HHHHHHHHhc----cccc------cc
Confidence            47999999999976 56677666544555655331                   2333333332    2111      11


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        .+.++++..++|+|+.|+.+ .....+...|.+.|++++.-
T Consensus        53 --~~~~~ll~~~iD~V~I~tp~-~~H~~~~~~al~~gk~V~~E   92 (167)
T d1xeaa1          53 --TDYRDVLQYGVDAVMIHAAT-DVHSTLAAFFLHLGIPTFVD   92 (167)
T ss_dssp             --SSTTGGGGGCCSEEEECSCG-GGHHHHHHHHHHTTCCEEEE
T ss_pred             --ccHHHhcccccceecccccc-cccccccccccccccccccC
Confidence              12334444469999999866 67778888899999998873

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.71  E-value=0.0085  Score=52.68  Aligned_cols=97  Identities=19%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHh-hhCCCce----EEEE
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFS-SIFPECH----IDAK  159 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~-~inP~v~----v~~~  159 (448)
                      +||.|+|+|..|+.+|..|+..|- +++|++.|.=....++..                  +.. ..-|.++    +.+ 
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~------------------~~n~~yl~~~~l~~~i~~-   67 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEK------------------RENVLFLKGVQLASNITF-   67 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHH------------------TBCTTTSTTCBCCTTEEE-
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhc------------------cccccccccccccccccc-
Confidence            579999999999999999999984 688876653221111110                  000 0112222    221 


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHH-------HHHcCCcEEEEc
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAA-------CVRRGLKVLCAT  207 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~-------c~~~~ip~I~~~  207 (448)
                          + .+.++.+.+ .|+||-|+-+...+..+.+.       ....+.|++++.
T Consensus        68 ----t-~~l~~a~~~-ad~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~t  116 (189)
T d1n1ea2          68 ----T-SDVEKAYNG-AEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCT  116 (189)
T ss_dssp             ----E-SCHHHHHTT-CSCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECC
T ss_pred             ----c-hhhhhccCC-CCEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEE
Confidence                1 245666665 99999999887776655442       456788998853

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.081  Score=46.82  Aligned_cols=104  Identities=14%  Similarity=0.259  Sum_probs=65.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      ++++++|+|.|+ |-+|+++++.|...|. .+++++..+......   .                      ..+.+++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~---~----------------------~~~~i~~~~   65 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE---E----------------------AYKNVNQEV   65 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS---G----------------------GGGGCEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc---c----------------------ccceeeeee
Confidence            478899999975 8899999999999885 589997654322110   0                      001223322


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCCH--------------HHHHHHHHHHHHcCCc-EEEEcCCCC
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDNI--------------DTKVALLAACVRRGLK-VLCATGAGA  211 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~--------------~~r~~l~~~c~~~~ip-~I~~~g~G~  211 (448)
                      . +..+.++....+.+ +|+|+.|....              ..-..+.++|.+.+++ +|..++.+.
T Consensus        66 ~-D~~~~~~~~~~~~~-~d~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~  131 (232)
T d2bkaa1          66 V-DFEKLDDYASAFQG-HDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGA  131 (232)
T ss_dssp             C-CGGGGGGGGGGGSS-CSEEEECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred             e-cccccccccccccc-cccccccccccccccchhhhhhhcccccceeeecccccCccccccCCcccc
Confidence            1 22233445555665 99999886421              1123577899999988 566665543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.033  Score=51.68  Aligned_cols=105  Identities=19%  Similarity=0.203  Sum_probs=61.3

Q ss_pred             CCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++||+|.|+.| +|+++++.|...|. +++.+|.-       +....               +.+.......+++.....
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~~-------~~~~~---------------~~~~~~~~~~~~d~~~~~   57 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGH-EVTVVDNF-------FTGRK---------------RNVEHWIGHENFELINHD   57 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC-------SSCCG---------------GGTGGGTTCTTEEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCC-------CcCCH---------------HHHHHhcCCCceEEEehH
Confidence            47899998866 99999999999995 47777631       11000               001112223344443332


Q ss_pred             CCccchHHHhcCCCCeEEEccC---------CHH--------HHHHHHHHHHHcCCcEEEEcCCCCccCCC
Q 013180          163 YDASSEEEILSGHPDFVLDCID---------NID--------TKVALLAACVRRGLKVLCATGAGARADPT  216 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~D---------n~~--------~r~~l~~~c~~~~ip~I~~~g~G~k~dpt  216 (448)
                      ..    +.++. ++|+||.+..         ++.        .-..|.++|++.++.+|..+.....++|.
T Consensus        58 ~~----~~~~~-~~d~VihlAa~~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~  123 (312)
T d2b69a1          58 VV----EPLYI-EVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPE  123 (312)
T ss_dssp             TT----SCCCC-CCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCS
T ss_pred             HH----HHHHc-CCCEEEECcccCCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCC
Confidence            21    22233 4999997642         211        12367788999999988876554444444

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.047  Score=45.43  Aligned_cols=92  Identities=11%  Similarity=0.025  Sum_probs=59.8

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh-hCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS-IFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~-inP~v~v~~~~~  161 (448)
                      ++-+|+|+|+|.+|..+++.|...|. .+.+||.|.=.                   ..   +++.+ ....+.+  +..
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~-------------------~~---~~~~~~~~~~~~v--i~G   56 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPED-------------------DI---KQLEQRLGDNADV--IPG   56 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHH-------------------HH---HHHHHHHCTTCEE--EES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchh-------------------HH---HHHHHhhcCCcEE--EEc
Confidence            34589999999999999999999996 58888876311                   11   11111 1223333  223


Q ss_pred             c-CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc
Q 013180          162 L-YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR  199 (448)
Q Consensus       162 ~-~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~  199 (448)
                      . .+++.+...--.++|.||.++++-..-..+...+++.
T Consensus        57 d~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~   95 (153)
T d1id1a_          57 DSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDM   95 (153)
T ss_dssp             CTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHH
T ss_pred             cCcchHHHHHhccccCCEEEEccccHHHHHHHHHHHHHh
Confidence            2 2333344443346999999999887777777777764

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.46  E-value=0.026  Score=46.17  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=68.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .-+|+|+|+|..|..++.+|-. .|..=+.++|.|.   +..+++..                       .++|.     
T Consensus         3 ~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~---~k~G~~I~-----------------------Gi~V~-----   51 (126)
T d2dt5a2           3 KWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDP---EKVGRPVR-----------------------GGVIE-----   51 (126)
T ss_dssp             CEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCT---TTTTCEET-----------------------TEEEE-----
T ss_pred             CceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCch---HhcCCEEC-----------------------CEEEe-----
Confidence            3489999999999999987653 4666777889873   33344331                       23342     


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCCCccCCCceEEccc
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAGARADPTRIRVADL  223 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G~k~dpt~i~i~di  223 (448)
                       ..+.+.++.....++++-|+.+. .+..+.+.|.++|++-|....-+.-..|..+.|.++
T Consensus        52 -~~~~l~~~~~~~i~iai~~i~~~-~~~~I~d~l~~~gIk~I~~f~~~~l~~~~~v~I~~v  110 (126)
T d2dt5a2          52 -HVDLLPQRVPGRIEIALLTVPRE-AAQKAADLLVAAGIKGILNFAPVVLEVPKEVAVENV  110 (126)
T ss_dssp             -EGGGHHHHSTTTCCEEEECSCHH-HHHHHHHHHHHHTCCEEEECSSSCCCCCTTSEEEEC
T ss_pred             -cHHHHHHHHhhcccEEEEeCCHH-HHHHHHHHHHHcCCCEEeecCceeecCCCCcEEEEe
Confidence             22345566666688888888764 455678889999999776544333333444444443

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=95.38  E-value=0.0068  Score=55.84  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=32.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      .+|+|||+|-+|+.+|.+|++.|..+++|+|.+.+.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~~   37 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGPLN   37 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            379999999999999999999999899999987654

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.36  E-value=0.057  Score=46.24  Aligned_cols=93  Identities=13%  Similarity=0.115  Sum_probs=59.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      -||.|||||.+|...+..|....=-+|+ +.|.+                   ..|++.+++... +.+.+++  +    
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~-------------------~~~~~~~~~~~~-~~~~~~~--~----   55 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRS-------------------LEKAKAFATANN-YPESTKI--H----   55 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSS-------------------HHHHHHHHHHTT-CCTTCEE--E----
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCC-------------------ccccccchhccc-cccceee--c----
Confidence            3799999999999999998876422222 32332                   334443333221 2223332  1    


Q ss_pred             CccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          164 DASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       164 ~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                        ++.++++. .++|+|+.|+.+ ..+..+...|.++|++++.-
T Consensus        56 --~~~~~ll~~~~iD~v~I~tp~-~~h~~~~~~~l~~g~~v~~E   96 (184)
T d1ydwa1          56 --GSYESLLEDPEIDALYVPLPT-SLHVEWAIKAAEKGKHILLE   96 (184)
T ss_dssp             --SSHHHHHHCTTCCEEEECCCG-GGHHHHHHHHHTTTCEEEEC
T ss_pred             --CcHHHhhhccccceeeecccc-hhhcchhhhhhhccceeecc
Confidence              23455553 359999999877 57788888899999999873

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.35  E-value=0.012  Score=49.59  Aligned_cols=76  Identities=22%  Similarity=0.273  Sum_probs=49.5

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCC-ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh----CCCceEEEE
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGV-GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI----FPECHIDAK  159 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGV-g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i----nP~v~v~~~  159 (448)
                      ||.|||+ |.||+.+|..|+..|. ++|.|+|-+.                 +..|++..+.-+...    .+.+++...
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~-----------------~~~~~~g~a~Dl~~~~~~~~~~~~~~~~   64 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREH-----------------SINKLEGLREDIYDALAGTRSDANIYVE   64 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGG-----------------GHHHHHHHHHHHHHHHTTSCCCCEEEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchh-----------------hhHhhhcccccchhcccccccCCccccC
Confidence            7999996 9999999999999995 8999988641                 124566555555543    233444433


Q ss_pred             eccCCccchHHHhcCCCCeEEEccC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~D  184 (448)
                      ...    +. +-+.+ .|+||-|..
T Consensus        65 ~~~----d~-~~l~~-aDvVVitAG   83 (145)
T d1hyea1          65 SDE----NL-RIIDE-SDVVIITSG   83 (145)
T ss_dssp             ETT----CG-GGGTT-CSEEEECCS
T ss_pred             Ccc----hH-HHhcc-ceEEEEecc
Confidence            321    11 22333 999987643

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.35  E-value=0.019  Score=48.60  Aligned_cols=32  Identities=34%  Similarity=0.588  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      +|+|||||-+|+.+|+.|.+.|. .+|..+|.+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            69999999999999999999996 467777654

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=95.31  E-value=0.0085  Score=50.11  Aligned_cols=32  Identities=34%  Similarity=0.497  Sum_probs=28.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      ||.|||+|.+|+.++..|+..|. .+|.|+|-+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~   34 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence            79999999999999999999995 789998844

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.27  E-value=0.019  Score=48.76  Aligned_cols=34  Identities=38%  Similarity=0.569  Sum_probs=30.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..+|+|.|+||+|..++..+...|...+..+|.+
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            4679999999999999999999999999887754

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.25  E-value=0.022  Score=50.21  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      -||+|||+|..|..+|.+|+++|.+ +++|+|..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~   35 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ   35 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            3899999999999999999999876 79999865

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.18  E-value=0.013  Score=51.51  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      .+||+|||+|-.|..+|..|++.|. +++|+|.+.+.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~~~~   41 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGY-SVHILARDLPE   41 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSCTT
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCCCCC
Confidence            4689999999999999999999998 69999987653

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.14  E-value=0.0063  Score=51.74  Aligned_cols=112  Identities=20%  Similarity=0.218  Sum_probs=64.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      ||.|||+|-.|+.+|++|+++|.. +.+.|.+.=...++.-+        |...+....+.+++  .++-+.+.+   +.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~-V~~~d~~~~~~~~~~~~--------~~~~~~~~~e~~~~--~d~ii~~v~---~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYS-LVVSDRNPEAIADVIAA--------GAETASTAKAIAEQ--CDVIITMLP---NS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCE-EEEECSCHHHHHHHHHT--------TCEECSSHHHHHHH--CSEEEECCS---SH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCe-EEEEeCCcchhHHHHHh--------hhhhcccHHHHHhC--CCeEEEEcC---CH
Confidence            699999999999999999999975 77776543222221111        11111111222221  122222221   22


Q ss_pred             cchHHHhc---------CCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          166 SSEEEILS---------GHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       166 ~~~~~ll~---------~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      +...+.+.         .+-++|||++. ++++...+.+.+.+.++-++++.-.|+
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg  123 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGG  123 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESH
T ss_pred             HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCC
Confidence            22222221         13578888876 567778888999999999998765543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.12  E-value=0.0027  Score=54.61  Aligned_cols=93  Identities=17%  Similarity=0.273  Sum_probs=59.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      +..|+|+|+|++|..++..+...|..++..+|.+.                   .|.+.++    ++-.. .+  ++  .
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~-------------------~k~~~~~----~~ga~-~~--i~--~   84 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE-------------------EKLKLAE----RLGAD-HV--VD--A   84 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH-------------------HHHHHHH----HTTCS-EE--EE--T
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchh-------------------HHHHHHh----hcccc-ee--ec--C
Confidence            57899999999999999999999999999887652                   1222222    22221 11  11  1


Q ss_pred             CccchHHHh----cCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          164 DASSEEEIL----SGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       164 ~~~~~~~ll----~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      ++++.+...    ...+|+||||+.+..+.....++++..|.-++
T Consensus        85 ~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~  129 (172)
T d1h2ba2          85 RRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLII  129 (172)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEE
T ss_pred             cccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEE
Confidence            222222222    12499999999998876665566665665443

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.11  E-value=0.039  Score=45.31  Aligned_cols=70  Identities=23%  Similarity=0.352  Sum_probs=49.8

Q ss_pred             cEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ||.|+|+ |-.|..++..+...|..-+..+|.+..                                             
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------------------------   36 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------------------------   36 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------------------------
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------------------------
Confidence            7999997 999999998888776544333332110                                             


Q ss_pred             ccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          165 ASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                           +.+. ++|+|||-+- ++.-....++|.++++|+|.+.
T Consensus        37 -----~~~~-~~DVvIDFS~-p~~~~~~l~~~~~~~~p~ViGT   72 (128)
T d1vm6a3          37 -----EELD-SPDVVIDFSS-PEALPKTVDLCKKYRAGLVLGT   72 (128)
T ss_dssp             -----EECS-CCSEEEECSC-GGGHHHHHHHHHHHTCEEEECC
T ss_pred             -----HHhc-cCCEEEEecC-HHHHHHHHHHHHhcCCCEEEEc
Confidence                 0112 4899998764 4666677889999999999854

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=95.11  E-value=0.035  Score=50.66  Aligned_cols=62  Identities=19%  Similarity=0.207  Sum_probs=45.4

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      +||+++.++|.|+ +|+|..+|+.|++.|. ++.++|.+                   +.+.+.+++.+.+...  ++..
T Consensus         1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~--~~~~   58 (260)
T d1zema1           1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMN-------------------REALEKAEASVREKGV--EARS   58 (260)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTS--CEEE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEE
Confidence            4899999999976 6899999999999996 58887653                   2356666777766554  3444


Q ss_pred             EeccC
Q 013180          159 KVLLY  163 (448)
Q Consensus       159 ~~~~~  163 (448)
                      +...+
T Consensus        59 ~~~Dv   63 (260)
T d1zema1          59 YVCDV   63 (260)
T ss_dssp             EECCT
T ss_pred             EEccC
Confidence            44443

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.08  E-value=0.0047  Score=52.70  Aligned_cols=92  Identities=22%  Similarity=0.209  Sum_probs=58.0

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .+.+|+|+|+ |++|..++..+...|..++.++|.+.                   .|.+.++    ++-....+..  .
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~-------------------~~~~~~~----~~Ga~~~i~~--~   81 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE-------------------EAVEAAK----RAGADYVINA--S   81 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH-------------------HHHHHHH----HHTCSEEEET--T
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccch-------------------hhHHHHH----HcCCceeecc--C
Confidence            3568999996 99999999999999999999988662                   2333332    2322222211  1


Q ss_pred             cCCccchHHHh----cCCCCeEEEccCCHHHHHHHHHHHHHcCC
Q 013180          162 LYDASSEEEIL----SGHPDFVLDCIDNIDTKVALLAACVRRGL  201 (448)
Q Consensus       162 ~~~~~~~~~ll----~~~~D~VIda~Dn~~~r~~l~~~c~~~~i  201 (448)
                        +.+..++..    .+.+|+||||+.+..+.....+.++..|.
T Consensus        82 --~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~  123 (170)
T d1jvba2          82 --MQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGK  123 (170)
T ss_dssp             --TSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEE
T ss_pred             --CcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCE
Confidence              111122221    23599999999987776655566655554

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.00  E-value=0.0096  Score=51.05  Aligned_cols=32  Identities=34%  Similarity=0.529  Sum_probs=30.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+|||+|-.|..+|..|++.|+.+++|+|..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            69999999999999999999999889999864

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.024  Score=49.31  Aligned_cols=96  Identities=14%  Similarity=0.019  Sum_probs=55.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .-..++|+|||.|..|-++|..|++.|. +++|+|.+..--..++..........-+.-.+-+.+.++..+  +++.. .
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g--V~i~l-~  115 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG--VTLKL-N  115 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT--CEEEE-S
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC--eEEEe-C
Confidence            3457899999999999999999999996 799998765433322211101000111112344455555443  44432 2


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      ..++.+.    .. ++|.||.|+..
T Consensus       116 ~~Vt~~~----~~-~~d~vilAtG~  135 (179)
T d1ps9a3         116 HTVTADQ----LQ-AFDETILASGI  135 (179)
T ss_dssp             CCCCSSS----SC-CSSEEEECCCE
T ss_pred             CEEcccc----cc-cceeEEEeecC
Confidence            2334332    23 48988887753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=94.83  E-value=0.077  Score=48.66  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=34.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|=|.|-||+++|+.|...|..-+.+-|.+
T Consensus        33 ~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~   69 (255)
T d1bgva1          33 TLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPD   69 (255)
T ss_dssp             CSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            5889999999999999999999999998888888876

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.83  E-value=0.042  Score=48.80  Aligned_cols=37  Identities=32%  Similarity=0.497  Sum_probs=32.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .-..++|+|||+|..|-.+|..|++.|. +++|+|...
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            3467999999999999999999999996 599998543

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.81  E-value=0.049  Score=49.66  Aligned_cols=64  Identities=22%  Similarity=0.290  Sum_probs=49.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ||+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+                   ..|.+.+.+.+.+..+..++..+
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~~~~~~~   60 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVS-------------------SEGLEASKAAVLETAPDAEVLTT   60 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhCCCCeEEEE
Confidence            688999999876 5899999999999996 58886632                   23567777888888887777776


Q ss_pred             eccCC
Q 013180          160 VLLYD  164 (448)
Q Consensus       160 ~~~~~  164 (448)
                      ...++
T Consensus        61 ~~Dvt   65 (258)
T d1iy8a_          61 VADVS   65 (258)
T ss_dssp             ECCTT
T ss_pred             eccCC
Confidence            65543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.72  E-value=0.054  Score=45.80  Aligned_cols=35  Identities=37%  Similarity=0.566  Sum_probs=31.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+||+|..++..+...|..++..+|..
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~   62 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN   62 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecch
Confidence            35779999999999999999999999999998765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.65  E-value=0.059  Score=49.59  Aligned_cols=37  Identities=16%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             HHhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+|+++.++|.| .||+|..+|+.|++.| .++.++|.+
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~G-a~Vii~~r~   58 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK   58 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcC-CEEEEEECC
Confidence            478999999997 5899999999999999 468887753

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.62  E-value=0.02  Score=46.49  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=30.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++++|||.|-+|.++|..|.+.|. +++|+..+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGL-DVTVMVRSI   53 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCC-eEEEEEech
Confidence            589999999999999999999996 699987664

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.59  E-value=0.018  Score=48.16  Aligned_cols=34  Identities=35%  Similarity=0.432  Sum_probs=29.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~  118 (448)
                      .||.|||+|.||+.+|..|+..|. .+|.|+|-+.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            589999999999999999999987 5799999553

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.58  E-value=0.013  Score=53.30  Aligned_cols=36  Identities=31%  Similarity=0.444  Sum_probs=31.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|.||+++|+.|...|.. +..+|.|
T Consensus        36 ~l~g~~v~IqG~GnVG~~~a~~L~~~Gak-vv~~d~~   71 (230)
T d1leha1          36 SLEGLAVSVQGLGNVAKALCKKLNTEGAK-LVVTDVN   71 (230)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCE-EEeeccc
Confidence            48899999999999999999999999954 6666654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.56  E-value=0.013  Score=51.71  Aligned_cols=32  Identities=31%  Similarity=0.346  Sum_probs=29.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|||+|||+|-.|..+|..|++.|. +++|+|.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~   32 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEA   32 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            4789999999999999999999998 6999985

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.017  Score=48.23  Aligned_cols=33  Identities=39%  Similarity=0.651  Sum_probs=28.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D  117 (448)
                      .||.|||+|.||+.+|..|+..|. .+|.|+|-+
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            379999999999999999999886 579998844

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.53  E-value=0.07  Score=47.52  Aligned_cols=111  Identities=12%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCccc--ccccCC---ccC-chHHHHHHHHHhhhCCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRH--AVATRA---DVG-TPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq--~l~~~~---dvG-~~Kv~~~~~~l~~inP~v  154 (448)
                      .+.+|.|||+||-|+.++..|.+.|+.  ++..+|.|.-.+++..-+  .+....   ..| ....+..++...+     
T Consensus        14 ~~~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e-----   88 (209)
T d2vapa1          14 TKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKE-----   88 (209)
T ss_dssp             TCCCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHH-----
T ss_pred             cCCcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcCCcchhcccccccccccccccchHHHHHHHHH-----
Confidence            358999999999999999999999986  456679987777665322  111111   111 1112222222221     


Q ss_pred             eEEEEeccCCccchHHHhcCCCCeEEEccCC-----HHHHHHHHHHHHHcCCcEEEEcC
Q 013180          155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDN-----IDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn-----~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                               +.+...+.+.+ +|+||-|..-     -..--.+.++|++.+++++....
T Consensus        89 ---------~~~~I~~~l~~-~d~vfi~AGlGGGTGsgaapvia~~ake~g~lvv~ivt  137 (209)
T d2vapa1          89 ---------SAEEIKAAIQD-SDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVT  137 (209)
T ss_dssp             ---------THHHHHHHHTT-CSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ---------HHHHHHHhccC-CCEEEEEEeCCCCccccHHHHHHHHHHHcCCcEEEEEe
Confidence                     11223345555 8888866541     12234688999999999887543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.52  E-value=0.034  Score=47.94  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=56.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC--C--ccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF--D--QVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~--D--~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+|.|+|+|..|+.+|..|+..|. +++|+..  |  .++.-|-+|                       .||........
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~-----------------------~~~~~~~~~~~   56 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGR-----------------------EHPRLGVKLNG   56 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTC-----------------------CBTTTTBCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhh-----------------------hhhhhcchhcc
Confidence            379999999999999999999984 5777522  1  111111111                       12222111100


Q ss_pred             c-cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHH-cCCcEEEE
Q 013180          161 L-LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVR-RGLKVLCA  206 (448)
Q Consensus       161 ~-~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~-~~ip~I~~  206 (448)
                      . ..-.++..+.+.+ +|+||.|+-....+..+.+.... .+.++|..
T Consensus        57 ~~i~~~~~~~~~~~~-ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          57 VEIFWPEQLEKCLEN-AEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EEEECGGGHHHHHTT-CSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             ccccccccHHHHHhc-cchhhcccchhhhHHHHHhhccccccceeccc
Confidence            0 0122345566665 99999999988777766654432 34455553

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.082  Score=49.22  Aligned_cols=65  Identities=14%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC---Cce
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP---ECH  155 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP---~v~  155 (448)
                      .+|+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+                   ..|.+.+++.|.+..+   ..+
T Consensus         8 g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~-------------------~~~l~~~~~el~~~~~~~~~~~   67 (297)
T d1yxma1           8 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRK-------------------LERLKSAADELQANLPPTKQAR   67 (297)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTSCTTCCCC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhhhccccCce
Confidence            3699999999976 6899999999999997 58887643                   3456666666665433   345


Q ss_pred             EEEEeccCC
Q 013180          156 IDAKVLLYD  164 (448)
Q Consensus       156 v~~~~~~~~  164 (448)
                      +..+...++
T Consensus        68 ~~~~~~Dvs   76 (297)
T d1yxma1          68 VIPIQCNIR   76 (297)
T ss_dssp             EEEEECCTT
T ss_pred             EEEEeccCC
Confidence            655555443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.46  E-value=0.026  Score=48.23  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=63.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccc----cCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVA----TRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~----~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+|.|||+|-.|+.+|.+|+..|.. +.+.|.+.=....+......    ....... ..+   ..+........+....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~-V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFK-VAVFNRTYSKSEEFMKANASAPFAGNLKAFE-TME---AFAASLKKPRKALILV   76 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCC-EEEECSSHHHHHHHHHHTTTSTTGGGEEECS-CHH---HHHHHBCSSCEEEECC
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCe-EEEEECCHHHHHHHHHcCCccccccchhhhh-hhh---HHHHhcccceEEEEee
Confidence            4799999999999999999999965 67776543222212111000    0000111 111   1111222111121111


Q ss_pred             ccCCcc-------chHHHhcCCCCeEEEccC-CHHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          161 LLYDAS-------SEEEILSGHPDFVLDCID-NIDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       161 ~~~~~~-------~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                        ....       .....+. .-++++|++. ++.....+.+.+.+.++-++++...|
T Consensus        77 --~~~~~~~~~~~~~~~~~~-~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          77 --QAGAATDSTIEQLKKVFE-KGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             --CCSHHHHHHHHHHHHHCC-TTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             --cCcchhhhhhhhhhhhcc-ccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence              1111       1112223 3578888775 56667788888999999999876554

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.021  Score=45.73  Aligned_cols=32  Identities=22%  Similarity=0.352  Sum_probs=29.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|||.|-+|.++|..|.+.|. +++|++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~   53 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGA-KTHLFEMF   53 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEECCChhhHHHHHHhhcccc-EEEEEeec
Confidence            789999999999999999999997 79998764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.30  E-value=0.095  Score=43.30  Aligned_cols=33  Identities=27%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -++|.||| +|-.|+.+|++|.++|. .++++|.+
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~   42 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGY-PISILDRE   42 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTT
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccc
Confidence            36999999 89999999999999997 58887754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.30  E-value=0.02  Score=47.94  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=27.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCC-ceEEEEe
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD  115 (448)
                      .||.|||+|.||+.+|..|+..|. .+|.|+|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            379999999999999999998875 7899987

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.14  Score=42.90  Aligned_cols=88  Identities=16%  Similarity=0.155  Sum_probs=56.4

Q ss_pred             CcEEEEcCChHHHH-HHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGLGGVGSH-AAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~GGvGs~-va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      -||.|||||.+|.. .+..|... ++.-+.++|.+.                   .|++...+...     +.      .
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~-------------------~~~~~~~~~~~-----~~------~   51 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTR-------------------AKALPICESWR-----IP------Y   51 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSC-------------------TTHHHHHHHHT-----CC------B
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechh-------------------Hhhhhhhhccc-----cc------c
Confidence            47999999999986 45555543 444445555442                   23333333331     11      1


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                      +  ++.++++. ++|+|+.|+.+ ..+..+...|.++|++++.-
T Consensus        52 ~--~~~~~l~~-~~D~V~I~tp~-~~h~~~~~~al~~gk~V~~E   91 (164)
T d1tlta1          52 A--DSLSSLAA-SCDAVFVHSST-ASHFDVVSTLLNAGVHVCVD   91 (164)
T ss_dssp             C--SSHHHHHT-TCSEEEECSCT-THHHHHHHHHHHTTCEEEEE
T ss_pred             c--ccchhhhh-hcccccccccc-hhccccccccccccceeecc
Confidence            1  23455665 49999999875 57778888899999998873

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.11  Score=44.29  Aligned_cols=97  Identities=20%  Similarity=0.232  Sum_probs=55.0

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc-cccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA-VATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~-l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .-||+|+|| |-.|..+++.+....  .+.|+  -.     +.|.. -+...|+|.-        ....++.+.+.    
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~--~~~lv--~~-----~~~~~~~~~g~d~~~~--------~~~~~~~~~~~----   62 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALE--GVQLG--AA-----LEREGSSLLGSDAGEL--------AGAGKTGVTVQ----   62 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHST--TEECC--CE-----ECCTTCTTCSCCTTCS--------SSSSCCSCCEE----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCC--CCEEE--EE-----Eecccchhccchhhhh--------hccccCCceee----
Confidence            347999997 999999999888763  23332  00     11110 0112233330        00011122221    


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                          .+.+.++. ++|+|||-+.. +.-....++|.++++|+|.+.
T Consensus        63 ----~~~~~~~~-~~DViIDFs~p-~~~~~~~~~a~~~~~~~ViGT  102 (162)
T d1diha1          63 ----SSLDAVKD-DFDVFIDFTRP-EGTLNHLAFCRQHGKGMVIGT  102 (162)
T ss_dssp             ----SCSTTTTT-SCSEEEECSCH-HHHHHHHHHHHHTTCEEEECC
T ss_pred             ----ccHHHHhc-ccceEEEeccH-HHHHHHHHHHHhccceeEEec
Confidence                12223334 49999998654 666677799999999999864

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.26  E-value=0.076  Score=48.59  Aligned_cols=64  Identities=14%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~  158 (448)
                      ||+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+                   ..|.+.+++.+.+.. +..++..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRS-------------------SERLEETRQIILKSGVSEKQVNS   61 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCCCceEE
Confidence            689999999876 7899999999999997 68887644                   235666677776653 3345655


Q ss_pred             EeccCC
Q 013180          159 KVLLYD  164 (448)
Q Consensus       159 ~~~~~~  164 (448)
                      +...++
T Consensus        62 ~~~Dvs   67 (272)
T d1xkqa_          62 VVADVT   67 (272)
T ss_dssp             EECCTT
T ss_pred             EEccCC
Confidence            554443

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.26  E-value=0.12  Score=48.31  Aligned_cols=37  Identities=27%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..=+.+.|.+
T Consensus        33 ~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~   69 (293)
T d1hwxa1          33 GFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESD   69 (293)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccc
Confidence            4788999999999999999999999998878787765

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.22  E-value=0.023  Score=47.16  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=31.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCC-ceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGV-GRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGV-g~i~LiD~D~  118 (448)
                      .+||+|||.|-+|.++|..|.+.|- .+|+|+|.+.
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            5799999999999999999999986 4899998775

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.22  E-value=0.022  Score=44.47  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=53.8

Q ss_pred             hCCcEEEEcCChHH-HHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGLGGVG-SHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~GGvG-s~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +.++|.++|.||.| |.+|..|...|. +++--|..        ...              ..+++.+..  +++..   
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~--------~~~--------------~~~~L~~~G--i~v~~---   58 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIA--------DGV--------------VTQRLAQAG--AKIYI---   58 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESC--------CSH--------------HHHHHHHTT--CEEEE---
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCC--------CCh--------------hhhHHHHCC--CeEEE---
Confidence            46889999999999 777999999997 46665532        111              114444433  44432   


Q ss_pred             cCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          162 LYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       162 ~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                      ...+++    +. +.|+||-...=...- --..+|+++|+|+|
T Consensus        59 g~~~~~----i~-~~d~vV~S~AI~~~n-pel~~A~~~gipii   95 (96)
T d1p3da1          59 GHAEEH----IE-GASVVVVSSAIKDDN-PELVTSKQKRIPVI   95 (96)
T ss_dssp             SCCGGG----GT-TCSEEEECTTSCTTC-HHHHHHHHTTCCEE
T ss_pred             CCcccc----CC-CCCEEEECCCcCCCC-HHHHHHHHcCCCEE
Confidence            122222    23 389988665422221 22456899999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.20  E-value=0.041  Score=44.44  Aligned_cols=57  Identities=21%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      .++|+|||.|-+|.++|..|+..|. +++|++...-   =|.|+       .+..=++.+.+.+++..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~---~l~~~-------~~~~~~~~~~~~l~~~G   86 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR---LMSRA-------APATLADFVARYHAAQG   86 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS---TTTTT-------SCHHHHHHHHHHHHTTT
T ss_pred             CCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc---ccccc-------CCHHHHHHHHHHHHHCC
Confidence            5899999999999999999999995 6999886431   12222       23344566677776654

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.13  E-value=0.12  Score=45.50  Aligned_cols=106  Identities=17%  Similarity=0.302  Sum_probs=66.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccc--cCC---cc---CchHHHHHHHHHhhhCCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVA--TRA---DV---GTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~--~~~---dv---G~~Kv~~~~~~l~~inP~v  154 (448)
                      +.|-|||+||.|+.++..|.+.|+.  ++..+|.|.-.+++..-+.-.  ...   ..   |.|.  ..++...+     
T Consensus         2 a~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~~~~~~~ki~iG~~~~~g~G~gg~p~--~g~~aa~e-----   74 (198)
T d1ofua1           2 AVIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALKNIAARTVLQLGPGVTKGLGAGANPE--VGRQAALE-----   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGSSCSCSEEEECCHHHHTTBCCCSCHH--HHHHHHHH-----
T ss_pred             ceEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHhcCCccceeccccccccCCCCCCChH--HHHHHHHH-----
Confidence            6799999999999999999999975  566679987777664422111  110   00   1221  11111111     


Q ss_pred             eEEEEeccCCccchHHHhcCCCCeEEEccCC-----HHHHHHHHHHHHHcCCcEEEEc
Q 013180          155 HIDAKVLLYDASSEEEILSGHPDFVLDCIDN-----IDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       155 ~v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn-----~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                               +.+...+.+.+ +|+||-+..-     -..--.+.++|++.++++|.-.
T Consensus        75 ---------~~~~I~~~l~~-~d~vfi~AGlGGGTGtgaapviA~~ake~g~lvvaiv  122 (198)
T d1ofua1          75 ---------DRERISEVLEG-ADMVFITTGMGGGTGTGAAPIIAEVAKEMGILTVAVV  122 (198)
T ss_dssp             ---------THHHHHHHHTT-CSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ---------HHHHHHHHhCC-CCeEEEEecCCCCccccHHHHHHHHHHHcCCCEEEEE
Confidence                     22344556665 8988866531     1233458899999999998754

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.054  Score=51.17  Aligned_cols=31  Identities=26%  Similarity=0.369  Sum_probs=24.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.|+|.|+ |-+|++++..|...|. +++.+|.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r   33 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKR   33 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            56778885 5599999999999995 5777665

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.99  E-value=0.011  Score=50.25  Aligned_cols=32  Identities=25%  Similarity=0.413  Sum_probs=27.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+|+|+|+|++|..+++.+-..|...+ ++|.
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~Ga~~i-~~~~   62 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAMGAHVV-AFTT   62 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEE-EEES
T ss_pred             CCEEEEeccchHHHHHHHHhhcccccch-hhcc
Confidence            4789999999999999999989998776 4554

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.94  E-value=0.097  Score=47.56  Aligned_cols=83  Identities=17%  Similarity=0.332  Sum_probs=56.0

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~  158 (448)
                      ||+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+                   ..+.+.+++.+.+.. +..++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~~~   61 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRH-------------------AERLEETRQQILAAGVSEQNVNS   61 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCCcCceEE
Confidence            788998888876 7999999999999997 58886644                   235666677776664 3345666


Q ss_pred             EeccCCc-cchHHHhc------CCCCeEEEcc
Q 013180          159 KVLLYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       159 ~~~~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      +...++. +...+++.      ++.|++|.+.
T Consensus        62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnA   93 (264)
T d1spxa_          62 VVADVTTDAGQDEILSTTLGKFGKLDILVNNA   93 (264)
T ss_dssp             EECCTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             EEccCCCHHHHHHHHHHHHHHhCCCCEeeccc
Confidence            6555543 22333321      3578777664

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=93.92  E-value=0.024  Score=50.29  Aligned_cols=33  Identities=27%  Similarity=0.277  Sum_probs=30.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ..||+|||+|-.|..+|..|++.|+ +++|+|..
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~   36 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGV-DVDVYERS   36 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            4689999999999999999999998 79999853

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.85  E-value=0.032  Score=45.15  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=41.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      +.++|+|||.|-+|+++|..|++.|.. +++++...--   |.|+       .+..-++.+.+.+++..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~-Vtlie~~~~~---l~~~-------~d~~~~~~~~~~l~~~g   86 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKK-VTVIDILDRP---LGVY-------LDKEFTDVLTEEMEANN   86 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCE-EEEEESSSST---TTTT-------CCHHHHHHHHHHHHTTT
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceE-EEEEEecCcc---cccc-------cchhhHHHHHHHhhcCC
Confidence            357999999999999999999999965 9998764210   1221       23444566777776653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.79  E-value=0.13  Score=46.72  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=40.6

Q ss_pred             hhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           82 VSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        82 L~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      |+++.|+|.| .+|+|.++|+.|++.|. ++.++|.+                   ..+.+.+.+.+++....
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~-------------------~~~l~~~~~~~~~~~~~   56 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRN-------------------EKELDECLEIWREKGLN   56 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCC
Confidence            6899999998 57899999999999997 68887753                   34556666777666544

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.79  E-value=0.05  Score=47.53  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc------eEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG------RLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg------~i~LiD~D~  118 (448)
                      ..||+|||+|.-|-.+|..|++.|..      +++|+|...
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            35899999999999999999999853      689998754

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.78  E-value=0.026  Score=51.30  Aligned_cols=33  Identities=21%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+|+|||+|-+|..+|..|++.|+ +++|+|..
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~   34 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGI-DNVILERQ   34 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            3589999999999999999999999 69999865

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=93.77  E-value=0.11  Score=47.52  Aligned_cols=30  Identities=30%  Similarity=0.592  Sum_probs=25.3

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      +||+|.|+.| +|+++++.|...|. +++.+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id   31 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            5899997655 99999999999996 577777

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.72  E-value=0.033  Score=44.42  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=28.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++|+|||.|-+|+++|..|++.|.. ++|++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~-Vtlve~   53 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTK-VTILEG   53 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CeEEEECCCccceeeeeeecccccE-EEEEEe
Confidence            6999999999999999999999954 999874

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.67  E-value=0.028  Score=50.45  Aligned_cols=35  Identities=29%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      ..|+|||+|-+|+.+|..|++.|. +++|+|.+.+.
T Consensus         5 ~DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~~~   39 (276)
T d1ryia1           5 YEAVVIGGGIIGSAIAYYLAKENK-NTALFESGTMG   39 (276)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSTT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCCCC
Confidence            359999999999999999999994 79999988754

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.66  E-value=0.28  Score=43.86  Aligned_cols=108  Identities=17%  Similarity=0.127  Sum_probs=62.4

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +++||+|.|+ |-+|+++++.|...|. ++++++.+.-              .....|.+.+. .+  -++.+++  +..
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~--------------~~~~~~~~~~~-~~--~~~~v~~--v~~   61 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPEV--------------VSNIDKVQMLL-YF--KQLGAKL--IEA   61 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSCC--------------SSCHHHHHHHH-HH--HTTTCEE--ECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCc--------------ccchhHHHHHh-hh--ccCCcEE--EEe
Confidence            4688999996 7899999999999994 5666543211              11112222221 11  2233443  333


Q ss_pred             cC-CccchHHHhcCCCCeEEEccC------CH-HHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          162 LY-DASSEEEILSGHPDFVLDCID------NI-DTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       162 ~~-~~~~~~~ll~~~~D~VIda~D------n~-~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      .+ +.+.....+.+ .+.++.+..      |. .....+..++...+.+++..++.|.
T Consensus        62 d~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~  118 (312)
T d1qyda_          62 SLDDHQRLVDALKQ-VDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGM  118 (312)
T ss_dssp             CSSCHHHHHHHHTT-CSEEEECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEECSCCSS
T ss_pred             ecccchhhhhhccC-cchhhhhhhhcccccchhhhhHHHHHHHHhcCCcEEEEeeccc
Confidence            33 34445556665 888887753      22 2334455555556788888766654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.65  E-value=0.03  Score=49.75  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=31.0

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      -+|+|||+|-.|..+|..|.+.|+..++|+|...
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3799999999999999999999999999998753

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.59  E-value=0.029  Score=45.12  Aligned_cols=32  Identities=13%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .++|+|||.|-+|.++|..|++.|. +++|++.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~   53 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGI-DSYIFAR   53 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTC-EEEEECS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccc-cceeeeh
Confidence            3789999999999999999999995 5999885

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.035  Score=44.87  Aligned_cols=32  Identities=25%  Similarity=0.466  Sum_probs=29.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      -++++|||.|-+|+++|..|++.|. +++|++.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~   54 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEF   54 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEe
Confidence            3699999999999999999999996 5999875

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.53  E-value=0.036  Score=44.14  Aligned_cols=31  Identities=23%  Similarity=0.348  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ++|+|||.|-+|.++|..|++.|. +++|++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~   52 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGA-QVSVVEA   52 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHhhccc-ceEEEee
Confidence            689999999999999999999996 5999876

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=93.52  E-value=0.054  Score=46.13  Aligned_cols=35  Identities=11%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D  117 (448)
                      ++-||.|+|||.+|...+..|... ++.-+.++|.+
T Consensus         2 ~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~   37 (170)
T d1f06a1           2 TNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRR   37 (170)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESS
T ss_pred             CcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecc
Confidence            456899999999999999988764 44444455654

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.47  E-value=0.16  Score=43.26  Aligned_cols=92  Identities=17%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             hCCcEEEEcCChHHHHH-HHHHHHc-CCceEE-EEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           83 SGSYVVVIGLGGVGSHA-AAMLLRS-GVGRLL-LVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~v-a~~Lars-GVg~i~-LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++-||.|||+|..|... +..|... +.-+|. +.|.|                   ..|++.+++..    +...+  +
T Consensus         2 kkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~-------------------~~~~~~~~~~~----~~~~~--~   56 (181)
T d1zh8a1           2 RKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRT-------------------RSHAEEFAKMV----GNPAV--F   56 (181)
T ss_dssp             CCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSS-------------------HHHHHHHHHHH----SSCEE--E
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEecc-------------------Hhhhhhhhccc----cccce--e
Confidence            45589999999999874 6666653 322343 44443                   23444444433    22111  1


Q ss_pred             eccCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          160 VLLYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       160 ~~~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                            .+.++++. .++|+|+.|+.+ .....+...|.++|++++.-
T Consensus        57 ------~~~~ell~~~~id~v~I~tp~-~~h~~~~~~al~~gk~V~~E   97 (181)
T d1zh8a1          57 ------DSYEELLESGLVDAVDLTLPV-ELNLPFIEKALRKGVHVICE   97 (181)
T ss_dssp             ------SCHHHHHHSSCCSEEEECCCG-GGHHHHHHHHHHTTCEEEEE
T ss_pred             ------eeeeccccccccceeeccccc-cccccccccccccchhhhcC
Confidence                  23456654 359999999865 66788888899999999874

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.45  E-value=0.14  Score=46.42  Aligned_cols=82  Identities=12%  Similarity=0.255  Sum_probs=55.0

Q ss_pred             hhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      |+++.|+|.|++ |+|.++|+.|++.|..-+.+.|.+.                    +.+ ..+.+...++..++..+.
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~--------------------~~~-~~~~~~~~~~~~~~~~~~   61 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE--------------------NPT-ALAELKAINPKVNITFHT   61 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC--------------------CHH-HHHHHHHHCTTSEEEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc--------------------cHH-HHHHHHhhCCCCCEEEEE
Confidence            788999999775 8999999999999988766644331                    111 124566788888888777


Q ss_pred             ccCCc--cchHHHh------cCCCCeEEEccC
Q 013180          161 LLYDA--SSEEEIL------SGHPDFVLDCID  184 (448)
Q Consensus       161 ~~~~~--~~~~~ll------~~~~D~VIda~D  184 (448)
                      ..++.  +...+++      .++.|++|.+..
T Consensus        62 ~d~~~~~~~~~~~~~~~~~~~g~iDilvnnAG   93 (254)
T d1sbya1          62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAG   93 (254)
T ss_dssp             CCTTSCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred             eecCCCHHHHHHHHHHHHHHcCCCCEEEeCCC
Confidence            66542  2233322      135888887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.42  E-value=0.031  Score=50.44  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ++|++.||+++|+|+.|.-++++|...|.++|.++|.+-+=..+  |.    ..+....|....    +..++..     
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~--r~----~~~~~~~~~~~~----~~~~~~~-----   86 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN--DP----ETCLNEYHLEIA----RITNPER-----   86 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT--SG----GGCSSHHHHHHH----HTSCTTC-----
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcC--cc----cccccHHHHHHH----hhhcchh-----
Confidence            47899999999999999999999999999999999987554433  21    012223333222    2223321     


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHH-HHHHHHHHHHcCCcEEEEcC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDT-KVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~-r~~l~~~c~~~~ip~I~~~g  208 (448)
                          ...+..+.+.+ .++++.....--. ...+.+.   ...|+|....
T Consensus        87 ----~~~~l~~~l~g-~~~~~g~~~~~~~~~e~m~~~---~~rPIIFpLS  128 (222)
T d1vl6a1          87 ----LSGDLETALEG-ADFFIGVSRGNILKPEWIKKM---SRKPVIFALA  128 (222)
T ss_dssp             ----CCSCHHHHHTT-CSEEEECSCSSCSCHHHHTTS---CSSCEEEECC
T ss_pred             ----hhcchHhhccC-cceeccccccccccHHHHhhc---CCCCEEEecC
Confidence                11234566665 8888877753222 2223233   4569999864

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.39  E-value=0.073  Score=48.04  Aligned_cols=37  Identities=22%  Similarity=0.544  Sum_probs=31.7

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||+++.++|.|+ +|+|..+|+.|+..|. ++.++|.+
T Consensus         2 ~~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~   39 (245)
T d2ag5a1           2 GRLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDIN   39 (245)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            4688999888854 7999999999999996 68888875

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.35  E-value=0.094  Score=47.58  Aligned_cols=62  Identities=15%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      +|+++.++|.|+ +|+|..+|+.|+..|.. +.+.|.+                   ..|.+.+.+.+++..+.  +..+
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~r~-------------------~~~~~~~~~~l~~~g~~--~~~~   65 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGAS-VVVSDIN-------------------ADAANHVVDEIQQLGGQ--AFAC   65 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTCC--EEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHHcCCc--EEEE
Confidence            578888888876 78999999999999964 7776643                   34567777777776653  4444


Q ss_pred             eccCC
Q 013180          160 VLLYD  164 (448)
Q Consensus       160 ~~~~~  164 (448)
                      ...++
T Consensus        66 ~~Dvs   70 (255)
T d1fmca_          66 RCDIT   70 (255)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            44443

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.31  Score=44.85  Aligned_cols=98  Identities=18%  Similarity=0.299  Sum_probs=59.4

Q ss_pred             cEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           86 YVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        86 ~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      ||+|.|+.| +|+++++.|...|--++..+|...   .+..+.  .                   -+|.  ++.+...++
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~---~~~~~~--~-------------------~~~~--~~~i~~Di~   55 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS---DAISRF--L-------------------NHPH--FHFVEGDIS   55 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC---GGGGGG--T-------------------TCTT--EEEEECCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC---cchhhh--c-------------------cCCC--eEEEECccC
Confidence            799998755 999999999999965788877421   011100  0                   0232  344444443


Q ss_pred             c-cchHH-HhcCCCCeEEEccCC-----------------HHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          165 A-SSEEE-ILSGHPDFVLDCIDN-----------------IDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       165 ~-~~~~~-ll~~~~D~VIda~Dn-----------------~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                      . +...+ ... ++|+||-+..-                 ...-..+.++|.+.++..+...+..
T Consensus        56 ~~~~~~~~~~~-~~d~Vih~a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~  119 (342)
T d2blla1          56 IHSEWIEYHVK-KCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSE  119 (342)
T ss_dssp             TCSHHHHHHHH-HCSEEEECBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGG
T ss_pred             ChHHHHHHHHh-CCCccccccccccccccccCCcccccccccccccccccccccccccccccccc
Confidence            2 23333 444 48998876642                 1123467788999999888765443

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.17  E-value=0.13  Score=46.55  Aligned_cols=35  Identities=26%  Similarity=0.569  Sum_probs=30.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ||+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r   37 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADI   37 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            588999999977 8999999999999996 5888774

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.07  Score=45.59  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=55.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYD  164 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~  164 (448)
                      -+|.|+|+|.||+.+++.|..-.= .+   +...+-..|..+. ++...-+........++.+..-..        ....
T Consensus         5 i~I~l~G~G~VG~~l~~~l~~~~~-~l---~~~v~~i~~s~~~-~~~~~g~~~~~~~~~~~~~~~~~~--------~~~~   71 (168)
T d1ebfa1           5 VNVAVIGAGVVGSAFLDQLLAMKS-TI---TYNLVLLAEAERS-LISKDFSPLNVGSDWKAALAASTT--------KTLP   71 (168)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCC-SS---EEEEEEEECSSBE-EECSSCSCCSCTTCHHHHHHTCCC--------BCCC
T ss_pred             EEEEEEeCCHHHHHHHHHHHHhHH-Hh---hhheEEEEEeeee-eecccccchHhhhhhhhhhhhccc--------cccc
Confidence            479999999999999999986421 11   1112222222222 222221111100111222222111        0011


Q ss_pred             ccchHHHhc--CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          165 ASSEEEILS--GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       165 ~~~~~~ll~--~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                      .+...+...  ...|+++||+.+.+....+ ..+.++|+.+|.+-
T Consensus        72 ~~~~~~~~~~~~~~~vivd~t~~~~~~~~~-~~aL~~G~hVVTAN  115 (168)
T d1ebfa1          72 LDDLIAHLKTSPKPVILVDNTSSAYIAGFY-TKFVENGISIATPN  115 (168)
T ss_dssp             HHHHHHHHTTCSSCEEEEECSCCHHHHTTH-HHHHHTTCEEECCC
T ss_pred             HHHHHHHhccCCCceEEEEecCChHHHHHH-HHHHHcCCeEEecC
Confidence            111122221  2378999999988775444 45889999999864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.13  E-value=0.11  Score=47.63  Aligned_cols=64  Identities=22%  Similarity=0.330  Sum_probs=46.1

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC-CCceEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF-PECHIDA  158 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in-P~v~v~~  158 (448)
                      ||+++.++|-|+ +|+|..+|+.|++.|. ++.+.|.+                   ..|.+.+++.+.+.. +..++..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~~~~~~~~~~   60 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRN-------------------EDRLEETKQQILKAGVPAEKINA   60 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHcCCCCcceEE
Confidence            688999999976 6899999999999997 58786542                   245566677777664 3345666


Q ss_pred             EeccCC
Q 013180          159 KVLLYD  164 (448)
Q Consensus       159 ~~~~~~  164 (448)
                      +...++
T Consensus        61 ~~~Dv~   66 (274)
T d1xhla_          61 VVADVT   66 (274)
T ss_dssp             EECCTT
T ss_pred             EEeeCC
Confidence            555443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.10  E-value=0.4  Score=44.14  Aligned_cols=37  Identities=22%  Similarity=0.211  Sum_probs=31.0

Q ss_pred             hhCCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           82 VSGSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        82 L~~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      ++++||+|.|+.| +|++++..|...|. ++..+|...-
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCC
Confidence            6899999999655 99999999999997 4888776533

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=93.08  E-value=0.23  Score=41.03  Aligned_cols=29  Identities=31%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEe
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ||.|||+|-.|+.+|++|.+.|.. +.++|
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~-v~~~~   30 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVE-VVTSL   30 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCE-EEECC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCe-EEEEc
Confidence            799999999999999999999863 44433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.04  E-value=0.054  Score=44.39  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=30.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .++|+|||.|-+|.++|..|+..|. ++++++...
T Consensus        35 ~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhhCc-ceeeeeecc
Confidence            5899999999999999999999996 599998643

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=93.02  E-value=0.13  Score=48.58  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=28.5

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||+|.|+.| +|+++++.|+..|...+..+|..
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~   34 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKL   34 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            3799998766 99999999999998878888864

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=92.94  E-value=0.11  Score=45.72  Aligned_cols=108  Identities=15%  Similarity=0.227  Sum_probs=66.1

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCccc--ccccCC---ccCc-hHHHHHHHHHhhhCCCceEE
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRH--AVATRA---DVGT-PKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq--~l~~~~---dvG~-~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ||.|||+||.|+.++..|.+.|+.  ++..+|.|.-.+++..-+  .+....   ..|. ...+..++...+        
T Consensus         2 kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e--------   73 (194)
T d1w5fa1           2 KIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLEASNADVKIQIGENITRGLGAGGRPEIGEQAALE--------   73 (194)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHH--------
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHhcCCcceEEecccccCCCcccccCchhhHhHHHH--------
Confidence            799999999999999999999985  567788887666543322  112211   1111 122222222211        


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccC-----CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCID-----NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~D-----n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                            +.+...+.+.+ .|+||-+..     --..--.+.++|++.+++++.-..
T Consensus        74 ------~~~~I~~~l~~-~d~vfi~AGlGGgTGtgaapviA~~ake~g~lvv~ivt  122 (194)
T d1w5fa1          74 ------SEEKIREVLQD-THMVFITAGFGGGTGTGASPVIAKIAKEMGILTVAIVT  122 (194)
T ss_dssp             ------THHHHHHHTTT-CSEEEEEEETTSSHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             ------HHHHHHHHhcC-CCeEEEEEecCCCcccchHHHHHHHHHHcCCceEEEEe
Confidence                  11223445555 888886653     123345788999999999987543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.17  Score=45.69  Aligned_cols=37  Identities=32%  Similarity=0.571  Sum_probs=32.1

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKD   39 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3789999999987 7999999999999997 58887743

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.93  E-value=0.042  Score=49.43  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        30 pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~   62 (370)
T d2iida1          30 PKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEAS   62 (370)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            3589999999999999999999996 69999854

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.91  E-value=0.13  Score=45.33  Aligned_cols=105  Identities=18%  Similarity=0.290  Sum_probs=62.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCch---------HHHHHHHHHhhhCCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTP---------KALCLKKHFSSIFPE  153 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~---------Kv~~~~~~l~~inP~  153 (448)
                      ++|-|||+||.|+.++.+|.+.|+.  ++..+|.|.-.+++..-+.-.   -+|++         ..+..++...+    
T Consensus         2 a~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~~~~~~~ki---~iG~~~t~G~Gagg~p~~g~~aa~e----   74 (198)
T d1rq2a1           2 AVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKL---DVGRDSTRGLGAGADPEVGRKAAED----   74 (198)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHHHCCCSEEE---ECCTTTC-----CCCHHHHHHHHHH----
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHhcCCcchhh---ccccccccCCCcCcChhhhHhhHHH----
Confidence            5788999999999999999999985  566678886555433222110   12211         11111111111    


Q ss_pred             ceEEEEeccCCccchHHHhcCCCCeEEEccC-----CHHHHHHHHHHHHHcCCcEEEEc
Q 013180          154 CHIDAKVLLYDASSEEEILSGHPDFVLDCID-----NIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       154 v~v~~~~~~~~~~~~~~ll~~~~D~VIda~D-----n~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                                +.+...+.+.+ +|+||-+..     ---.--.+.++|++.++.+|.-.
T Consensus        75 ----------~~~~I~~~l~~-~d~vfi~AGlGGgTGtGaaPviA~iake~g~l~v~iv  122 (198)
T d1rq2a1          75 ----------AKDEIEELLRG-ADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVV  122 (198)
T ss_dssp             ----------THHHHHHHHTT-CSEEEEEEETTSSHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             ----------HHHHHHHHhcC-CCEEEEEEecCCCCCcchHHHHHHHHHHcCCcEEEEE
Confidence                      12234455654 898886543     11234467899999999988643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.90  E-value=0.25  Score=46.62  Aligned_cols=116  Identities=20%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCCCccccccc---CCcc--CchHHHHHHHHHhhhCCCceEE
Q 013180           84 GSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVAT---RADV--GTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        84 ~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~---~~dv--G~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      .+||+|.|+.| +|++++..|...| -++..+|+       |.|.....   ...+  -.+.-+.+...-...++.+++ 
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDn-------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-   71 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDN-------LVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIEL-   71 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEEC-------CHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEE-
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEec-------CCcccccccccccccccccchHHHHHHHHhhcCCCcEE-
Confidence            47899998866 9999999999999 46888883       33321110   0000  112223333333333444443 


Q ss_pred             EEeccC-CccchHHHhcC-CCCeEEEccC---------C-----------HHHHHHHHHHHHHcCCc--EEEEcCC
Q 013180          158 AKVLLY-DASSEEEILSG-HPDFVLDCID---------N-----------IDTKVALLAACVRRGLK--VLCATGA  209 (448)
Q Consensus       158 ~~~~~~-~~~~~~~ll~~-~~D~VIda~D---------n-----------~~~r~~l~~~c~~~~ip--~I~~~g~  209 (448)
                       +...+ +.+....++.+ ++|+|+.+..         +           ...-..+.++|++.+..  ++.++..
T Consensus        72 -~~~Dl~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~  146 (393)
T d1i24a_          72 -YVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM  146 (393)
T ss_dssp             -EESCTTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred             -EEccCCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccc
Confidence             33343 33445555543 4899997652         1           11223567888886643  5555544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.88  E-value=0.053  Score=45.56  Aligned_cols=32  Identities=34%  Similarity=0.397  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||.|||+|-+|+.+|+.|.+.|. +++.+|.+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~   32 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQ   32 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECC
Confidence            379999999999999999999996 46666654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.87  E-value=0.2  Score=45.41  Aligned_cols=60  Identities=12%  Similarity=0.022  Sum_probs=42.1

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      |+++.++|.|+ +|+|..+|+.|++.|. ++.++|.+                   ..+.+.+.+.+.+...  ++..+.
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~~~--~~~~~~   63 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARN-------------------EYELNECLSKWQKKGF--QVTGSV   63 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--ceEEEe
Confidence            67888888866 6899999999999997 58887654                   2355556666666544  344444


Q ss_pred             ccC
Q 013180          161 LLY  163 (448)
Q Consensus       161 ~~~  163 (448)
                      ..+
T Consensus        64 ~Dv   66 (259)
T d1xq1a_          64 CDA   66 (259)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            333

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=92.84  E-value=0.079  Score=47.83  Aligned_cols=37  Identities=22%  Similarity=0.407  Sum_probs=31.9

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +||+++.++|.|. +|+|..+|+.|++.|. ++.+.|.+
T Consensus         1 qrL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~   38 (247)
T d2ew8a1           1 QRLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLV   38 (247)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            4799999999977 6899999999999997 58887754

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=92.83  E-value=0.23  Score=44.98  Aligned_cols=37  Identities=22%  Similarity=0.618  Sum_probs=31.5

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .||+++.++|.|+ +|+|..+|+.|++.|. ++.++|.+
T Consensus         2 nrL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~   39 (268)
T d2bgka1           2 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIA   39 (268)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            3799999999975 6899999999999996 48887754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.054  Score=43.77  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++|+|||.|-+|+++|..|++.|. +++|++..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~   54 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGS-KTSLMIRH   54 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCc-EEEEEeec
Confidence            799999999999999999999996 58887763

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.14  Score=43.00  Aligned_cols=34  Identities=26%  Similarity=0.483  Sum_probs=28.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|+|++|..+++.+-..|+. +..+|..
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~-vi~~~~~   60 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAE-TYVISRS   60 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCE-EEEEESS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhcccc-ccccccc
Confidence            378999999999999999988889985 5566543

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.54  E-value=0.043  Score=43.73  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...++|+|||.|-+|+++|..|++.| .++++++..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g-~~vt~i~~~   54 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATG-RRTVMLVRT   54 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTT-CEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcc-hhheEeecc
Confidence            34689999999999999999999999 558887754

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.51  E-value=0.17  Score=43.21  Aligned_cols=81  Identities=17%  Similarity=0.233  Sum_probs=50.8

Q ss_pred             CCcEEEEcCChHHHHHH--HHHHHc-C--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           84 GSYVVVIGLGGVGSHAA--AMLLRS-G--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va--~~Lars-G--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      +.||.|||+|++|+..+  ..|++. +  .++|.|+|-|.=      |.         +..+..+.+.....++..++..
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~------~~---------~~~~~~~~~~~~~~~~~~~i~~   66 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEE------RL---------DAILTIAKKYVEEVGADLKFEK   66 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHH------HH---------HHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCch------HH---------HHHHHHHHHHHHhcCCCeEEEE
Confidence            46899999999997643  334433 2  368999887621      10         1223445555566677777766


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccCCH
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCIDNI  186 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~Dn~  186 (448)
                      ..      +..+-+.+ .|+||.+..-.
T Consensus        67 ~t------d~~eaL~d-ad~Vv~~~~~g   87 (171)
T d1obba1          67 TM------NLDDVIID-ADFVINTAMVG   87 (171)
T ss_dssp             ES------CHHHHHTT-CSEEEECCCTT
T ss_pred             eC------ChhhcccC-CCeEeeecccc
Confidence            43      23445565 99999887643

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.42  E-value=0.063  Score=47.28  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=51.9

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|++++|.|||+|.+|+.+|+.|...|.. +..+|...                  .+..+        . .        
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~-V~~~d~~~------------------~~~~~--------~-~--------   83 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAK-VITYDIFR------------------NPELE--------K-K--------   83 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECSSC------------------CHHHH--------H-T--------
T ss_pred             cccCCeEEEecccccchhHHHhHhhhccc-ccccCccc------------------ccccc--------c-c--------
Confidence            47899999999999999999999999974 66666321                  00000        0 0        


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAA  195 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~  195 (448)
                       .+..++.++++.. +|+|+.+.. +.+++..+++-
T Consensus        84 -~~~~~~l~~~l~~-sDii~~~~plt~~T~~li~~~  117 (197)
T d1j4aa1          84 -GYYVDSLDDLYKQ-ADVISLHVPDVPANVHMINDE  117 (197)
T ss_dssp             -TCBCSCHHHHHHH-CSEEEECSCCCGGGTTCBSHH
T ss_pred             -eeeeccccccccc-cccccccCCccccccccccHH
Confidence             0122456777775 999888775 56676666543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.27  E-value=0.27  Score=44.57  Aligned_cols=63  Identities=14%  Similarity=0.111  Sum_probs=44.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      -|+++.++|.|+ +|+|.++|+.|++.|. ++.+.|.+.                  ..+.+.+.+.+++..+  ++..+
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~------------------~~~~~~~~~~~~~~g~--~~~~~   62 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSK------------------EDEANSVLEEIKKVGG--EAIAV   62 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHTTC--EEEEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCc------------------HHHHHHHHHHHHhcCC--cEEEE
Confidence            378888888875 8999999999999997 577766431                  1356677777777665  44444


Q ss_pred             eccCC
Q 013180          160 VLLYD  164 (448)
Q Consensus       160 ~~~~~  164 (448)
                      ...++
T Consensus        63 ~~Dvt   67 (261)
T d1geea_          63 KGDVT   67 (261)
T ss_dssp             ECCTT
T ss_pred             EccCC
Confidence            44443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.063  Score=46.89  Aligned_cols=35  Identities=31%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      =++|.|||+|-.|+.+|..++++|. .++++|.|.=
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHH
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChH
Confidence            3689999999999999999999996 4889997753

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.061  Score=47.64  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=29.7

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+||+|||+|--|-.+|..|+++|. +++|++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa   36 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEA   36 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeC
Confidence            46789999999999999999999998 6888764

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.18  E-value=0.066  Score=42.98  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=29.4

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .++|+|||.|-+|.++|..|++.|. +++|++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~   64 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRG   64 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccc-eEEEEecc
Confidence            4799999999999999999999995 58998754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.16  E-value=0.057  Score=46.99  Aligned_cols=35  Identities=23%  Similarity=0.153  Sum_probs=29.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-----eEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-----RLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-----~i~LiD~D~V  119 (448)
                      .||+|||+|-+|..+|..|++.|..     +.++++.+..
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~~   40 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRFT   40 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCCT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCCC
Confidence            3799999999999999999999975     6788876643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.13  E-value=0.2  Score=45.06  Aligned_cols=61  Identities=16%  Similarity=0.110  Sum_probs=43.6

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      |.++.++|.|+ +|+|..+|+.|+..|. ++.++|.+                   ..+.+.+++.+++....  +..+.
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~l~~~g~~--~~~~~   65 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRT-------------------QKSCDSVVDEIKSFGYE--SSGYA   65 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESS-------------------HHHHHHHHHHHHTTTCC--EEEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC-------------------HHHHHHHHHHHHhcCCc--EEEEE
Confidence            56888888876 6999999999999996 68887653                   24566777777776543  44444


Q ss_pred             ccCC
Q 013180          161 LLYD  164 (448)
Q Consensus       161 ~~~~  164 (448)
                      ..++
T Consensus        66 ~Dvt   69 (251)
T d2c07a1          66 GDVS   69 (251)
T ss_dssp             CCTT
T ss_pred             ccCC
Confidence            4443

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.13  E-value=0.25  Score=44.43  Aligned_cols=81  Identities=20%  Similarity=0.267  Sum_probs=53.9

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .++.++|.|+ +|+|..+|+.|++.|. ++.++|.+                   ..|.+.+.+.+.+..+..++..+..
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~~~~~~~~l~~~~~~~~~~~~~~   61 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWN-------------------LEAGVQCKAALHEQFEPQKTLFIQC   61 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHTTTSCGGGEEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            4566777766 7899999999999996 58886643                   2355666677777766677777665


Q ss_pred             cCCc-cchHHHhc------CCCCeEEEcc
Q 013180          162 LYDA-SSEEEILS------GHPDFVLDCI  183 (448)
Q Consensus       162 ~~~~-~~~~~ll~------~~~D~VIda~  183 (448)
                      .++. +...+++.      ++.|++|.+.
T Consensus        62 Dv~~~~~v~~~~~~~~~~~G~iDilVnnA   90 (254)
T d2gdza1          62 DVADQQQLRDTFRKVVDHFGRLDILVNNA   90 (254)
T ss_dssp             CTTSHHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             ecCCHHHHHHHHHHHHHHcCCcCeecccc
Confidence            5543 22333321      3477777654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.12  E-value=0.078  Score=45.96  Aligned_cols=36  Identities=25%  Similarity=0.440  Sum_probs=32.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|.+++|.|+|+|.+|..+++.|...|. ++..+|.+
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~   74 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRT   74 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSS
T ss_pred             cccCceEEEeccccccccceeeeecccc-cccccccc
Confidence            4788999999999999999999999998 68888765

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.07  E-value=0.24  Score=44.53  Aligned_cols=35  Identities=17%  Similarity=0.436  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ||+++.++|.| .+|+|..+|+.|++.|.. +.++|.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r   38 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAK-VMITGR   38 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            78999999987 578999999999999975 888654

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.05  E-value=0.063  Score=46.97  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=35.7

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHA  128 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~  128 (448)
                      .+|.|||+|-||..+|..|+..|. ++..+|.|.=...+||...
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~g~   43 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQGK   43 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTC
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcccC
Confidence            369999999999999999999996 5889998866666666554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.04  E-value=0.21  Score=41.41  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccCCc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLYDA  165 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~~~  165 (448)
                      ||.+||||-+|+.++..|..+| .++++.|.+                   ..|++.+++.+.     +.       .. 
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~-~~i~v~~r~-------------------~~~~~~l~~~~g-----~~-------~~-   48 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTP-HELIISGSS-------------------LERSKEIAEQLA-----LP-------YA-   48 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSS-CEEEEECSS-------------------HHHHHHHHHHHT-----CC-------BC-
T ss_pred             EEEEEeccHHHHHHHHHHHhCC-CeEEEEcCh-------------------HHhHHhhccccc-----ee-------ee-
Confidence            6999999999999999999886 356554432                   134444443331     11       11 


Q ss_pred             cchHHHhcCCCCeEEEccCCHHHH
Q 013180          166 SSEEEILSGHPDFVLDCIDNIDTK  189 (448)
Q Consensus       166 ~~~~~ll~~~~D~VIda~Dn~~~r  189 (448)
                      .+..+.... .|+||-|+......
T Consensus        49 ~~~~~~~~~-~dvIilavkp~~~~   71 (152)
T d2ahra2          49 MSHQDLIDQ-VDLVILGIKPQLFE   71 (152)
T ss_dssp             SSHHHHHHT-CSEEEECSCGGGHH
T ss_pred             chhhhhhhc-cceeeeecchHhHH
Confidence            234555664 99999999654433

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.01  E-value=0.057  Score=50.55  Aligned_cols=34  Identities=18%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++++|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~   34 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQR   34 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECC
Confidence            57999999999999999999999995 78999854

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.98  E-value=0.26  Score=42.03  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             hCCcEEEEcCChHHHHHHH-HHHH-c---CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           83 SGSYVVVIGLGGVGSHAAA-MLLR-S---GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~-~Lar-s---GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      ++.||.|||+|++|...+. .|.+ .   .+.+|.|+|-|.=      |  +       +-.++.+.......+...++.
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~------~--~-------~~~~~~~~~~~~~~~~~~~~~   66 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKE------R--Q-------DRIAGACDVFIREKAPDIEFA   66 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHH------H--H-------HHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChh------H--H-------HHHHHHHHHHHHHhCCCcceE
Confidence            3568999999999876443 2222 2   2368888875521      0  0       112455556666666666776


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHH--HHHHHHHHHHHcCC
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNID--TKVALLAACVRRGL  201 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~--~r~~l~~~c~~~~i  201 (448)
                      ...      +..+-+.+ .|+||.+.--..  .+........++|+
T Consensus        67 ~~~------d~~eal~~-AD~Vvitag~~~~~g~~rd~~i~~~~Gi  105 (167)
T d1u8xx1          67 ATT------DPEEAFTD-VDFVMAHIRVGKYAMRALDEQIPLKYGV  105 (167)
T ss_dssp             EES------CHHHHHSS-CSEEEECCCTTHHHHHHHHHHHHHTTTC
T ss_pred             ecC------ChhhccCC-CCEEEECCCcCCCCceeHHHhhchhcCc
Confidence            543      23344555 999999987533  34445566777776

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.94  E-value=0.064  Score=46.50  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      ++|.|||+|-.|+.+|..++++|+. ++++|.|.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~-V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTP-ILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCC-EEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCe-EEEEECCH
Confidence            5799999999999999999999965 89999874

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=91.89  E-value=0.17  Score=43.96  Aligned_cols=74  Identities=18%  Similarity=0.252  Sum_probs=52.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      |.++++|+|+||-|-.+...+-..|...+.++|+....                                          
T Consensus         1 k~kkl~i~Gagg~~~~v~di~~~~~~~~~~f~dd~~~~------------------------------------------   38 (193)
T d3bswa1           1 RTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGM------------------------------------------   38 (193)
T ss_dssp             CCSEEEEEC--CHHHHHHHHHHHHTCCEEEECCCCTTG------------------------------------------
T ss_pred             CCCEEEEEcCCHhHHHHHHHHHhCCCcEEEEEcCCCCc------------------------------------------
Confidence            57899999999999999999999998888887753210                                          


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVL  204 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I  204 (448)
                          .....+. ++++++ ++.+...|..+.+.+.+.+.++.
T Consensus        39 ----~~~~~~~-~~~~~i-aIG~~~~R~~~~~~~~~~~~~~~   74 (193)
T d3bswa1          39 ----KFESTLP-KYDFFI-AIGNNEIRKKIYQKISENGFKIV   74 (193)
T ss_dssp             ----GGGGGSC-CCEEEE-CCSCHHHHHHHHHHHHHTTCCBC
T ss_pred             ----ccccccc-cccEEE-EECCcHHHHHHHHHhhhhccccc
Confidence                0011122 366655 78888899999998888876654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.87  E-value=0.077  Score=44.30  Aligned_cols=32  Identities=28%  Similarity=0.480  Sum_probs=28.0

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCc-eEEEEeC
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVG-RLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg-~i~LiD~  116 (448)
                      +||.||| +|.||+.+|..|+..|+. +|.|+|-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            5899999 699999999999999875 6888774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.86  E-value=0.093  Score=45.75  Aligned_cols=35  Identities=37%  Similarity=0.430  Sum_probs=31.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .+.+|+|+|||++|..++..+...|.+++.++|.+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            35789999999999999999889999999998865

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.77  E-value=0.092  Score=41.75  Aligned_cols=57  Identities=14%  Similarity=0.043  Sum_probs=39.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIF  151 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~in  151 (448)
                      .++|+|||.|.+|+++|..|...|..  +++|++...    -+-++       ....=++.+.+.+++.+
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~----~iL~~-------~d~~~~~~l~~~l~~~G   78 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE----MILRG-------FDHTLREELTKQLTANG   78 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS----SSSTT-------SCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc----hhhcc-------cchHHHHHHHHHHHhcC
Confidence            36999999999999999999988864  799987631    11122       12233466777777653

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.75  E-value=0.18  Score=43.24  Aligned_cols=36  Identities=33%  Similarity=0.510  Sum_probs=32.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -++.++|+|+|+|-+|-..+....+.| .+++++|-+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lG-A~V~~~D~~   64 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLG-AQVQIFDIN   64 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTT-CEEEEEESC
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCC-CEEEEEeCc
Confidence            367899999999999999999999999 569998865

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.077  Score=44.92  Aligned_cols=32  Identities=25%  Similarity=0.345  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      --|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus         6 yDviViGaG~~Gl~~A~~La~~G~-~V~vlE~~   37 (297)
T d2bcgg1           6 YDVIVLGTGITECILSGLLSVDGK-KVLHIDKQ   37 (297)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-CEEEEcCC
Confidence            348999999999999999999996 68987764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.40  E-value=0.38  Score=43.37  Aligned_cols=51  Identities=16%  Similarity=0.103  Sum_probs=38.7

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFP  152 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP  152 (448)
                      |+++.++|-|+ +|+|..+|+.|++.|. ++.+.|.+                   ..+.+.+.+.+.+...
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~~~~~g~   57 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRN-------------------QKELNDCLTQWRSKGF   57 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC
Confidence            67888999977 5899999999999997 58886643                   3455666666666554

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.32  E-value=0.44  Score=42.76  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=38.6

Q ss_pred             CcEE-EEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVV-VIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~Vl-VVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +||+ |.|+ +|+|..+|+.|++.|. ++.+.|.+                   ..+.+.+++.+++...  ++..+...
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~-------------------~~~l~~~~~~i~~~g~--~~~~~~~D   58 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYN-------------------DATAKAVASEINQAGG--HAVAVKVD   58 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            4664 4455 6899999999999997 58886642                   3466677777776654  34444433


Q ss_pred             C
Q 013180          163 Y  163 (448)
Q Consensus       163 ~  163 (448)
                      +
T Consensus        59 v   59 (255)
T d1gega_          59 V   59 (255)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.30  E-value=0.67  Score=42.76  Aligned_cols=103  Identities=23%  Similarity=0.284  Sum_probs=59.6

Q ss_pred             CCcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +++|+|.|+.| +||++++.|...|..-+.+++           .         ..|..-+.+......+.-....+...
T Consensus        11 gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR-----------~---------~~~~~~~~~~~~~~~~~~~~~~~~~D   70 (342)
T d1y1pa1          11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR-----------S---------ASKLANLQKRWDAKYPGRFETAVVED   70 (342)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES-----------S---------HHHHHHHHHHHHHHSTTTEEEEECSC
T ss_pred             cCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC-----------C---------chhHHHHHHhhhccccccccEEEecc
Confidence            68999999877 999999999999965333321           1         12333344444334433333333333


Q ss_pred             -CCccchHHHhcCCCCeEEEccCCH--------------HHHHHHHHHHHHc-CCc-EEEEc
Q 013180          163 -YDASSEEEILSGHPDFVLDCIDNI--------------DTKVALLAACVRR-GLK-VLCAT  207 (448)
Q Consensus       163 -~~~~~~~~ll~~~~D~VIda~Dn~--------------~~r~~l~~~c~~~-~ip-~I~~~  207 (448)
                       .+.+...+.+.+ +|.|+.+....              ..-..+.+.|.+. +++ +|..+
T Consensus        71 l~~~~~~~~~~~~-~~~v~~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~S  131 (342)
T d1y1pa1          71 MLKQGAYDEVIKG-AAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS  131 (342)
T ss_dssp             TTSTTTTTTTTTT-CSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEEC
T ss_pred             ccchhhhhhhccc-chhhhhhcccccccccccccccchhhhHHHHHHhhhcccccccccccc
Confidence             344455566665 89888666532              1223566778775 344 44443

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.21  E-value=0.15  Score=42.59  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=30.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D~  118 (448)
                      ++.+|+|||.|.+|.++|..|.+.|.. ++.+++...
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~   38 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT   38 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcc
Confidence            467999999999999999999999975 566666543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.11  E-value=0.55  Score=40.11  Aligned_cols=25  Identities=24%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGV  108 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGV  108 (448)
                      .+||+|.|+ |-+|+++++.|...|-
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~   27 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPT   27 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC
Confidence            479999998 9999999999999884

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.09  E-value=0.096  Score=43.50  Aligned_cols=52  Identities=21%  Similarity=0.252  Sum_probs=38.7

Q ss_pred             CcEEEE-cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           85 SYVVVI-GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        85 ~~VlVV-G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      .||.|+ |+|++|..+|+.|++.|.. +++.+.|                   ..|++.+.+.+....+...+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~-V~l~~R~-------------------~e~~~~l~~~i~~~~~~~~~   53 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHE-IVVGSRR-------------------EEKAEAKAAEYRRIAGDASI   53 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCE-EEEEESS-------------------HHHHHHHHHHHHHHHSSCCE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCCCceE
Confidence            369999 8999999999999999965 6674433                   25777777777766554433

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.07  E-value=0.074  Score=44.05  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +||+|||.|-+|.++|..|.+ + .+++|++...
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~-~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-T-YEVTVIDKEP   32 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-T-SEEEEECSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-C-CCEEEEeccc
Confidence            589999999999999999976 4 4899997543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.02  E-value=0.075  Score=46.55  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=28.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+|+|||+|-.|..+|..|++.|. +++|+|.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~   31 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGT-DAVLLES   31 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            379999999999999999999998 5999875

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.97  E-value=0.1  Score=42.26  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=28.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      -++++|||.|-+|+++|..|.+.|+ ++++++.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~   57 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEM   57 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTC-EEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEe
Confidence            3699999999999999999999996 5888765

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.91  E-value=0.13  Score=41.05  Aligned_cols=32  Identities=22%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      -++++|||.|-+|+++|..|++.|.. ++++..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~-Vtiv~~   53 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAE-VTVLEA   53 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCc-eEEEEe
Confidence            38899999999999999999999975 777653

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.88  E-value=0.23  Score=46.17  Aligned_cols=36  Identities=28%  Similarity=0.523  Sum_probs=30.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+++.++|-|+ +|+|..+|+.|++.|. ++.+.|.+
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~   40 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLG   40 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCC
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            577888888876 6899999999999997 58887754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.85  E-value=0.091  Score=42.28  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=29.3

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -++++|||.|-+|.++|..|++.|. +++++...
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~   57 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFA   57 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEc
Confidence            3799999999999999999999995 69997653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.81  E-value=0.41  Score=42.94  Aligned_cols=106  Identities=18%  Similarity=0.236  Sum_probs=61.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh--CCCceEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI--FPECHID  157 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i--nP~v~v~  157 (448)
                      .|++++|+|-|+|-||+++|+.|++ .|..-+.+.|.+-         .++.++.+-..+....++.-..+  +|..+  
T Consensus        28 ~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G---------~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~--   96 (234)
T d1b26a1          28 DPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRG---------GIYNPEGFDVEELIRYKKEHGTVVTYPKGE--   96 (234)
T ss_dssp             CTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTE---------EEECTTCCCHHHHHHHHHHSSCSTTCSSCE--
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCC---------cEEeccccchHHHHHHHHhhcceeccccce--
Confidence            4889999999999999999999986 5888777777652         23444444443332222211111  11111  


Q ss_pred             EEeccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEc
Q 013180          158 AKVLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       158 ~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~  207 (448)
                             .-..++++.-++|+++=|.-.-..-   .+.+.+.+.++|..+
T Consensus        97 -------~~~~~~~~~~~~DI~~PcA~~~~I~---~~~a~~l~~~~I~e~  136 (234)
T d1b26a1          97 -------RITNEELLELDVDILVPAALEGAIH---AGNAERIKAKAVVEG  136 (234)
T ss_dssp             -------EECHHHHHTSCCSEEEECSCTTCBC---HHHHTTCCCSEEECC
T ss_pred             -------eeccccccccccceeecchhccccc---HHHHHHhhhceEeec
Confidence                   1123456666799999776432111   124444556666643

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.78  E-value=0.39  Score=43.16  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=29.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.+
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRN   38 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            67889999976 6899999999999997 58887653

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.75  E-value=0.12  Score=41.61  Aligned_cols=86  Identities=10%  Similarity=-0.030  Sum_probs=54.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC-
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY-  163 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~-  163 (448)
                      ++|+|+|+|.+|.++++.|...   .+.+||.|.-                   +++.+    ..  .++.  .+.... 
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~---~i~vi~~d~~-------------------~~~~~----~~--~~~~--~i~Gd~~   50 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS---EVFVLAEDEN-------------------VRKKV----LR--SGAN--FVHGDPT   50 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG---GEEEEESCTT-------------------HHHHH----HH--TTCE--EEESCTT
T ss_pred             CEEEEECCCHHHHHHHHHHcCC---CCEEEEcchH-------------------HHHHH----Hh--cCcc--ccccccC
Confidence            5899999999999999999544   3677776632                   11211    11  1222  232322 


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRG  200 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~  200 (448)
                      +++.+.+.--.+++.+|-++++......+...+++.+
T Consensus        51 ~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~~~r~~~   87 (129)
T d2fy8a1          51 RVSDLEKANVRGARAVIVNLESDSETIHCILGIRKID   87 (129)
T ss_dssp             SHHHHHHTTCTTCSEEEECCSSHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHhhhhcCcEEEEeccchhhhHHHHHHHHHHC
Confidence            2333333323469999999999888777777777753

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.61  E-value=1.6  Score=37.99  Aligned_cols=108  Identities=23%  Similarity=0.283  Sum_probs=60.5

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      ++||+|.|+ |-+|+++++.|...|. +++.++.+.-...+             ..|..... .+  .++.+++  +...
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~~~~~-------------~~~~~~~~-~~--~~~~~~~--~~~d   63 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVRESTASSN-------------SEKAQLLE-SF--KASGANI--VHGS   63 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCCTTTT-------------HHHHHHHH-HH--HTTTCEE--ECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCccccc-------------hhHHHHHH-hh--ccCCcEE--EEee
Confidence            689999997 8999999999999996 57776654211110             11222221 11  2333444  2222


Q ss_pred             C-CccchHHHhcCCCCeEEEccCCHHH--HHHHHHHHHH-cCCcEEEEcCCCC
Q 013180          163 Y-DASSEEEILSGHPDFVLDCIDNIDT--KVALLAACVR-RGLKVLCATGAGA  211 (448)
Q Consensus       163 ~-~~~~~~~ll~~~~D~VIda~Dn~~~--r~~l~~~c~~-~~ip~I~~~g~G~  211 (448)
                      + +.......+.+ .+.|+.+......  ...+.+.|.. ..+.++..+..+.
T Consensus        64 ~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~~~~  115 (307)
T d1qyca_          64 IDDHASLVEAVKN-VDVVISTVGSLQIESQVNIIKAIKEVGTVKRFFPSEFGN  115 (307)
T ss_dssp             TTCHHHHHHHHHT-CSEEEECCCGGGSGGGHHHHHHHHHHCCCSEEECSCCSS
T ss_pred             cccchhhhhhhhh-ceeeeecccccccchhhHHHHHHHHhccccceeeecccc
Confidence            2 33334455555 8888888764432  2344455554 4455666555444

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.48  E-value=0.43  Score=39.34  Aligned_cols=92  Identities=18%  Similarity=0.183  Sum_probs=56.1

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcC--CceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSG--VGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsG--Vg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ..+|.|||+ |-+|.++++.|...+  ..+|..+               ......|+.        +....++..+.   
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~---------------~s~~~~Gk~--------i~~~~~~~~~~---   55 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL---------------ASAESAGQR--------MGFAESSLRVG---   55 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE---------------ECTTTTTCE--------EEETTEEEECE---
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEE---------------eecccCCcc--------eeeccccchhc---
Confidence            468999999 889999999998654  3445443               333444542        22222222221   


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                       ..+.+    .+. +.|+++-|+.+-.++...-. ..+.++.+|+-++
T Consensus        56 -~~~~~----~~~-~~d~vf~a~p~~~s~~~~~~-~~~~g~~VID~Ss   96 (144)
T d2hjsa1          56 -DVDSF----DFS-SVGLAFFAAAAEVSRAHAER-ARAAGCSVIDLSG   96 (144)
T ss_dssp             -EGGGC----CGG-GCSEEEECSCHHHHHHHHHH-HHHTTCEEEETTC
T ss_pred             -cchhh----hhc-cceEEEecCCcchhhhhccc-cccCCceEEeech
Confidence             11111    123 49999999987666655544 5678899998554

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.45  E-value=0.44  Score=39.35  Aligned_cols=104  Identities=23%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhh------CCCceEEEE
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSI------FPECHIDAK  159 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~i------nP~v~v~~~  159 (448)
                      ||.+||+|-.|+.+|++|++.|.  ..+.+...                   +|++.+.+.....      ...+.+...
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~--~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~   60 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP--TLVWNRTF-------------------EKALRHQEEFGSEAVPLERVAEARVIFT   60 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC--EEEECSST-------------------HHHHHHHHHHCCEECCGGGGGGCSEEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC--EEEEeCCH-------------------HHHHHHHHHcCCcccccccccceeEEEe
Confidence            69999999999999999998763  33433211                   1221111111100      001122221


Q ss_pred             eccCCccch----HHHhc--CCCCeEEEcc-CCHHHHHHHHHHHHHcCCcEEEEcCCCC
Q 013180          160 VLLYDASSE----EEILS--GHPDFVLDCI-DNIDTKVALLAACVRRGLKVLCATGAGA  211 (448)
Q Consensus       160 ~~~~~~~~~----~~ll~--~~~D~VIda~-Dn~~~r~~l~~~c~~~~ip~I~~~g~G~  211 (448)
                      ... +.+..    ..++.  .+-.++||++ -++++...+.+.+.++|+.++++.-.|+
T Consensus        61 ~~~-~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg  118 (156)
T d2cvza2          61 CLP-TTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGG  118 (156)
T ss_dssp             CCS-SHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESH
T ss_pred             ccc-chhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCc
Confidence            111 11111    12221  1345677665 4677888999999999999999765553

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.41  E-value=0.11  Score=46.70  Aligned_cols=31  Identities=42%  Similarity=0.628  Sum_probs=28.2

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      |+|||+|-+|+.+|..|++.|. +++|+|...
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            9999999999999999999996 699998743

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.31  E-value=0.47  Score=39.39  Aligned_cols=83  Identities=10%  Similarity=-0.008  Sum_probs=47.0

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCc-eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVG-RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg-~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      .||.|+|+ |.||+.++..|+..++- +..+++.          +.+  ..+....|.+.....+........-..... 
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~----------~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   71 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVIL----------QLL--EIPQAMKALEGVVMELEDCAFPLLAGLEAT-   71 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEE----------EEE--CCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhH----------hHh--ccccchhhHcCchhhhhccccccccccccC-
Confidence            38999997 99999999999988753 2111111          111  123334466666666665554322222111 


Q ss_pred             CCccchHHHhcCCCCeEEEccC
Q 013180          163 YDASSEEEILSGHPDFVLDCID  184 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~D  184 (448)
                         .+..+-+.+ .|+||-+..
T Consensus        72 ---~~~~~~~~~-advViitaG   89 (154)
T d1y7ta1          72 ---DDPKVAFKD-ADYALLVGA   89 (154)
T ss_dssp             ---SCHHHHTTT-CSEEEECCC
T ss_pred             ---Cchhhhccc-ccEEEeecC
Confidence               222344454 999997765

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.1  Score=48.79  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=66.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCC----------ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGV----------GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGV----------g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|.+.||++.|+|+.|..++..|+.+++          ++|.++|.+-+=..+  |.     .++...|     +.+.+
T Consensus        21 k~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~--r~-----~~~~~~k-----~~~a~   88 (294)
T d1pj3a1          21 KPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKG--RK-----AKIDSYQ-----EPFTH   88 (294)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTT--CS-----SCCCTTT-----GGGCB
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCC--CC-----cccHHHH-----HHhhc
Confidence            47899999999999999999999887765          589999987542211  00     0111111     11111


Q ss_pred             hCCCceEEEEeccCCccchHHHhc-CCCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILS-GHPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .++.         -...++.+.+. -++|++|.++.  ..-++..+-.++.-...|+|.+..
T Consensus        89 ~~~~---------~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLS  141 (294)
T d1pj3a1          89 SAPE---------SIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALS  141 (294)
T ss_dssp             CCCS---------SCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECC
T ss_pred             cccc---------cchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEcc
Confidence            1111         01123344432 03888888774  344566666778888999999875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.99  E-value=0.23  Score=44.69  Aligned_cols=36  Identities=19%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ||+++.++|-|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~   39 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDIL   39 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            689999999977 7899999999999998 58887764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.95  E-value=0.28  Score=37.41  Aligned_cols=88  Identities=14%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             CCcEEEEcCChHHH-HHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           84 GSYVVVIGLGGVGS-HAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        84 ~~~VlVVG~GGvGs-~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      +.||-++|.||.|- .+|..|...|. +++--|        ++...              ..++|++..  +++..   .
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD--------~~~~~--------------~t~~L~~~G--i~i~~---g   52 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSNGN-DVYGSN--------IEETE--------------RTAYLRKLG--IPIFV---P   52 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEC--------SSCCH--------------HHHHHHHTT--CCEES---S
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhCCC-eEEEEe--------CCCCh--------------hHHHHHHCC--CeEEe---e
Confidence            46899999999996 67899999997 355544        22211              123455554  44421   1


Q ss_pred             CCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 013180          163 YDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLC  205 (448)
Q Consensus       163 ~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~  205 (448)
                      .+.++.    . +.|+||-...=.+. .-...+|++.|+|+++
T Consensus        53 h~~~~i----~-~~d~vV~SsAI~~~-npel~~A~~~gIpv~~   89 (89)
T d1j6ua1          53 HSADNW----Y-DPDLVIKTPAVRDD-NPEIVRARMERVPIEN   89 (89)
T ss_dssp             CCTTSC----C-CCSEEEECTTCCTT-CHHHHHHHHTTCCEEE
T ss_pred             eccccc----C-CCCEEEEecCcCCC-CHHHHHHHHcCCCccC
Confidence            233332    3 38999866532111 1225688999999975

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=89.84  E-value=0.12  Score=48.15  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      +||+|||+|-.|..+|.+|.+.|.+ +++|++-.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~   38 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERR   38 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECC
Confidence            6899999999999999999999874 79998755

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=89.83  E-value=0.33  Score=45.22  Aligned_cols=105  Identities=16%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHc----------CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----------GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lars----------GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|++.||+|.|+|..|..++..|+.+          |.++|.++|.+-+=..+-        .|.-..|...    ..+
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R--------~~l~~~k~~~----a~~   88 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR--------ASLTPEKEHF----AHE   88 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC--------SSCCTTGGGG----CBS
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCC--------cccCHHHHHH----HHH
Confidence            468999999999999999999999866          567999999875532221        1111111100    000


Q ss_pred             hCCCceEEEEeccCCccchHHHhcC-CCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILSG-HPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~~-~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .+            ...+..+.+.. +++++|.++.  ..-++..+-..+.-...|+|.+..
T Consensus        89 ~~------------~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLS  138 (298)
T d1gq2a1          89 HC------------EMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALS  138 (298)
T ss_dssp             CC------------CCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECC
T ss_pred             hh------------hhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEcc
Confidence            01            01122222221 3667776654  334455666677777888888764

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.81  E-value=0.33  Score=43.75  Aligned_cols=37  Identities=19%  Similarity=0.343  Sum_probs=32.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~D  117 (448)
                      -|++++|+|-|.|-||+++|+.|.. .|..-+.+.|.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~   66 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSK   66 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccc
Confidence            4889999999999999999999986 587777777765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.79  E-value=0.27  Score=41.74  Aligned_cols=30  Identities=20%  Similarity=0.195  Sum_probs=24.7

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ++|+|.| .|.+|+++++.|+..|-. ++++|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~-v~v~~   34 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDK-FVAKG   34 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTT-CEEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCc-EEEEE
Confidence            6899998 599999999999999953 44544

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=89.77  E-value=0.38  Score=42.41  Aligned_cols=95  Identities=17%  Similarity=0.151  Sum_probs=56.9

Q ss_pred             CCcEEEEcCChHHH-HHHHHHHHc-CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGS-HAAAMLLRS-GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs-~va~~Lars-GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      .-||.|||||..|. ..+..+... ++.-+.++|.                   ...|++..++... + +..++..+  
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~-------------------~~~~a~~~~~~~~-i-~~~~~~~~--   89 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSG-------------------NAEKAKIVAAEYG-V-DPRKIYDY--   89 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECS-------------------CHHHHHHHHHHTT-C-CGGGEECS--
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecC-------------------CHHHHHHHHHhhc-c-cccccccc--
Confidence            56899999999996 566666544 3322224343                   2334444444431 1 11222221  


Q ss_pred             cCCccchHHHhc-CCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEE
Q 013180          162 LYDASSEEEILS-GHPDFVLDCIDNIDTKVALLAACVRRGLKVLCA  206 (448)
Q Consensus       162 ~~~~~~~~~ll~-~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~  206 (448)
                          .+.++++. .++|+|+.|+.+ .....+...|.++|++++.-
T Consensus        90 ----~d~~ell~~~~iD~V~I~tp~-~~H~~~~~~al~~gk~v~~E  130 (221)
T d1h6da1          90 ----SNFDKIAKDPKIDAVYIILPN-SLHAEFAIRAFKAGKHVMCE  130 (221)
T ss_dssp             ----SSGGGGGGCTTCCEEEECSCG-GGHHHHHHHHHHTTCEEEEC
T ss_pred             ----Cchhhhcccccceeeeeccch-hhhhhHHHHhhhcchhhhcC
Confidence                23455554 358999998887 45667777888899999873

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.16  Score=42.31  Aligned_cols=31  Identities=35%  Similarity=0.449  Sum_probs=25.7

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHH-cC-CceEEEEe
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLR-SG-VGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~Lar-sG-Vg~i~LiD  115 (448)
                      .||.|+|+ |.||+.+|..|+. .| +.+|.|+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D   34 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYD   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEec
Confidence            37999995 9999999999875 46 46899987

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.70  E-value=0.45  Score=39.50  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=21.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGV  108 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGV  108 (448)
                      .||.|+|+ |.||+.++..|+..++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~   28 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSV   28 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTT
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHh
Confidence            48999996 9999999999987665

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=89.64  E-value=0.17  Score=41.96  Aligned_cols=31  Identities=23%  Similarity=0.349  Sum_probs=26.5

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|.+||+|-.|+.+++.|..+|-.++.+.|.
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            6999999999999999999998666766443

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.56  Score=41.95  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=39.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCc
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPEC  154 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v  154 (448)
                      |..+.|+|.|+ +|+|.++|+.|++.|.. +.+.|.+                   ..|.+.+++.+.+.++.+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~~-V~l~~r~-------------------~~~l~~~~~~~~~~~~~~   58 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKSK-LVLWDIN-------------------KHGLEETAAKCKGLGAKV   58 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC-------------------HHHHHHHHHHHHHTTCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCE-EEEEECC-------------------HHHHHHHHHHHHhcCCcE
Confidence            67788888876 57999999999999975 7776633                   345667777787766543

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=89.54  E-value=1.6  Score=39.45  Aligned_cols=109  Identities=15%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCC-----ceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEE
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGV-----GRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDA  158 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGV-----g~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~  158 (448)
                      .||+|.|. |-+|+++++.|+..|.     .++..+|.-.....-.                     .+.......+++.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~~~~~~   59 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRA---------------------NLAPVDADPRLRF   59 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGG---------------------GGGGGTTCTTEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHh---------------------HhhhhhcCCCeEE
Confidence            37899965 6789999999999763     4566666543322111                     1111222233444


Q ss_pred             EeccCCccchHHHhcCCCCeEEEccC-----------------CHHHHHHHHHHHHHcCCc-EEEEcCCCCccC
Q 013180          159 KVLLYDASSEEEILSGHPDFVLDCID-----------------NIDTKVALLAACVRRGLK-VLCATGAGARAD  214 (448)
Q Consensus       159 ~~~~~~~~~~~~ll~~~~D~VIda~D-----------------n~~~r~~l~~~c~~~~ip-~I~~~g~G~k~d  214 (448)
                      +................+|.|+-+..                 |...-..+.+.|.+++++ +|.+++....++
T Consensus        60 ~~~d~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~  133 (322)
T d1r6da_          60 VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGS  133 (322)
T ss_dssp             EECCTTCHHHHHHHTTTCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCC
T ss_pred             EEeccccchhhhccccccceEEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecC
Confidence            44433332222222334888886642                 222234677899988865 777665544433

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.57  Score=42.25  Aligned_cols=54  Identities=19%  Similarity=0.189  Sum_probs=41.4

Q ss_pred             CCcEEEE--cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           84 GSYVVVI--GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        84 ~~~VlVV--G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      .+||.||  |.+|+|-++|+.|++.|-.++.+.+.+                   ..|.+.+.+.|++..+.+.+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~-------------------~~~~~~~~~~l~~~~~~~~~   57 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARD-------------------VTRGQAAVQQLQAEGLSPRF   57 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESS-------------------HHHHHHHHHHHHHTTCCCEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECC-------------------HHHHHHHHHHHHhcCCcEEE
Confidence            5799888  778999999999999865678886543                   34677778888877765543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=89.41  E-value=0.42  Score=43.09  Aligned_cols=35  Identities=31%  Similarity=0.515  Sum_probs=29.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.++|.|+ +|+|..+|+.|++.|.. +.+.|.+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~-V~~~~r~   38 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGAR-VVLADVL   38 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCE-EEEEESC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCE-EEEEECC
Confidence            68889999977 58999999999999985 8887753

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=89.41  E-value=0.37  Score=42.75  Aligned_cols=30  Identities=27%  Similarity=0.431  Sum_probs=23.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .||+|.|+ |=+|+++++.|...|  ++..+|.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g--~~v~~~~   31 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG--NLIALDV   31 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS--EEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC--CEEEEEC
Confidence            36999987 889999999998775  5555553

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.39  E-value=0.51  Score=42.55  Aligned_cols=36  Identities=25%  Similarity=0.372  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+++.++|.| .+|+|..+|+.|++.|.. +.+.|.+
T Consensus        15 sL~gK~~lITGas~GIG~aia~~la~~Ga~-Vvi~~~~   51 (272)
T d1g0oa_          15 SLEGKVALVTGAGRGIGREMAMELGRRGCK-VIVNYAN   51 (272)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCE-EEEEeCC
Confidence            48899999997 589999999999999975 6665543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.37  E-value=0.14  Score=46.35  Aligned_cols=37  Identities=27%  Similarity=0.481  Sum_probs=33.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|+|-|.|-||+++|+.|...|..-+.+-|.+
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~   64 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDIN   64 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeeccc
Confidence            5899999999999999999999999998767776654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=89.33  E-value=0.15  Score=44.75  Aligned_cols=32  Identities=38%  Similarity=0.391  Sum_probs=28.6

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      --|+|||+|..|..+|..|++.|. ++.|+|..
T Consensus         3 yDViIIGaG~aGl~aA~~la~~G~-~V~liEk~   34 (251)
T d2i0za1           3 YDVIVIGGGPSGLMAAIGAAEEGA-NVLLLDKG   34 (251)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            459999999999999999999997 68898854

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.27  E-value=0.41  Score=43.03  Aligned_cols=34  Identities=32%  Similarity=0.543  Sum_probs=27.2

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |+++.++|.|+ +|+|..+|+.|++.|. ++.+.|.
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r   36 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGF   36 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            56777777755 6899999999999997 5777654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=89.26  E-value=0.42  Score=41.03  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=55.9

Q ss_pred             cEEEEcCChHHHHHHHHHHHcC-CceEEEEeCCccccCCCcccccccCCcc-CchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADV-GTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dv-G~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      ||.|.|+|-+|..++..|.... +.-+.|-|...   .-...+.+.....+ +.......   +.+.  ...+       
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~i~v-------   67 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSP---NYEAFIAHRRGIRIYVPQQSIKK---FEES--GIPV-------   67 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSC---SHHHHHHHHTTCCEECCGGGHHH---HHTT--TCCC-------
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCC---cHHHHHhcccCcceeccCcccee---cccc--ceec-------
Confidence            7999999999999999998653 33333333221   10111111011111 11111100   1110  0111       


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGA  209 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~  209 (448)
                       ......++.+ .|+||+||..+..+... +...+.++++|..++.
T Consensus        68 -~g~~~~~~~~-vDiViecTG~f~~~e~a-~~hl~~G~KvIi~~~~  110 (178)
T d1b7go1          68 -AGTVEDLIKT-SDIVVDTTPNGVGAQYK-PIYLQLQRNAIFQGGE  110 (178)
T ss_dssp             -CCCHHHHHHH-CSEEEECCSTTHHHHHH-HHHHHTTCEEEECTTS
T ss_pred             -CCchhhhhhc-CCEEEECCCCcCCHHHH-HHHHHcCCEEEEECCC
Confidence             1123344444 99999999998877664 4555788899886543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.22  E-value=2.3  Score=38.72  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=27.3

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +.+.++|||.| +|-+|++++..|...|- ++..+|.
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            34446888875 58899999999999996 5777774

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=89.12  E-value=0.16  Score=44.34  Aligned_cols=35  Identities=31%  Similarity=0.470  Sum_probs=30.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|++++|.|||+|.+|..+|+.|...|+. +...|.
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   80 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFN-VLFYDP   80 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECT
T ss_pred             eeeCceEEEeccccccccceeeeeccccc-eeeccC
Confidence            48999999999999999999999988865 555554

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=89.01  E-value=0.25  Score=41.46  Aligned_cols=34  Identities=26%  Similarity=0.263  Sum_probs=28.5

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      +++|+|||.|-+|.++|..|.+.|.. +|+++...
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~   37 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDE   37 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESS
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEecc
Confidence            57899999999999999999999975 56665543

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.92  E-value=0.63  Score=41.44  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |+++.++|-|+ +|+|..+|+.|++.|. ++.+.|.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~   37 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATS   37 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCC
Confidence            56788888764 7899999999999997 57776653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=88.91  E-value=0.19  Score=43.96  Aligned_cols=35  Identities=23%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|.+++|.|||+|.+|+.+|+.|..-|+. +..+|.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~-v~~~d~   76 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAK-VIAYDP   76 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             cccceeeeeeeccccccccccccccccee-eeccCC
Confidence            68899999999999999999999999976 556665

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=88.89  E-value=0.34  Score=41.39  Aligned_cols=106  Identities=15%  Similarity=0.067  Sum_probs=56.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC-CceEEEEeCCccccCCCcccccccCCcc--C-chHHHHHHHHHhhhCCCceEEEE
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSG-VGRLLLVDFDQVSVSSLNRHAVATRADV--G-TPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsG-Vg~i~LiD~D~V~~sNLnRq~l~~~~dv--G-~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      ..||.|.|.|-+|..++..|.... +.-+.+-|...-..   .-+.+....++  + ..+.....+    ..        
T Consensus         2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~----~~--------   66 (172)
T d2czca2           2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE---AYRAKELGIPVYAASEEFIPRFEK----EG--------   66 (172)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH---HHHHHHTTCCEEESSGGGHHHHHH----HT--------
T ss_pred             cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH---HHHhhhcCceeecccccceeeecc----cC--------
Confidence            358999999999999999887543 22233334221100   00100000011  0 111111111    00        


Q ss_pred             eccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          160 VLLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                        .....+..+++.+ .|+||+|+..+.++..+..+. +.|++.|..++
T Consensus        67 --~~~~~~~~~~~~~-vDvViEcTG~f~~~~~~~~hl-~~G~k~Vi~s~  111 (172)
T d2czca2          67 --FEVAGTLNDLLEK-VDIIVDATPGGIGAKNKPLYE-KAGVKAIFQGG  111 (172)
T ss_dssp             --CCCSCBHHHHHTT-CSEEEECCSTTHHHHHHHHHH-HHTCEEEECTT
T ss_pred             --ccccchhhhhhcc-CCEEEECCCCCCCHHHHHHHH-HcCCCEEEECC
Confidence              0011234455554 999999999999988886554 56788777554

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.25  Score=41.50  Aligned_cols=32  Identities=34%  Similarity=0.425  Sum_probs=26.1

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEE
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~Li  114 (448)
                      .+.+|+|.|+ |++|..+++.+...|..-|.++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~   60 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTA   60 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEEeccccccccccccccccCccccccc
Confidence            3567999996 9999999999999998655553

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.86  E-value=1.6  Score=40.23  Aligned_cols=33  Identities=24%  Similarity=0.324  Sum_probs=27.8

Q ss_pred             hCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      +|.||+|.| .|=+|++++..|...|. +++.+|.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeC
Confidence            688999997 57799999999999995 5777763

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=88.81  E-value=0.43  Score=43.18  Aligned_cols=28  Identities=32%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceE
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRL  111 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i  111 (448)
                      ++||+|.|. |-+|+++++.|...|--.+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi   30 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVEL   30 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEE
Confidence            568999965 7799999999999986544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.62  E-value=0.41  Score=43.05  Aligned_cols=36  Identities=14%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      |+++.++|.|+ +|+|..+|+.|++.|. ++.++|.+.
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~   43 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSA   43 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH
Confidence            67888888866 5799999999999997 588888753

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.33  E-value=0.24  Score=41.38  Aligned_cols=31  Identities=35%  Similarity=0.553  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      .++|+|||.|-+|..+|..+.|.|..+++++
T Consensus        45 ~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          45 RGAVIVLGAGDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHHHcCCcceeEE
Confidence            4689999999999999999999999999986

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=88.33  E-value=0.37  Score=40.50  Aligned_cols=94  Identities=16%  Similarity=0.204  Sum_probs=51.5

Q ss_pred             CCcEEEEcCChHHHHH-HHHHHHcCCceEEEE-eCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           84 GSYVVVIGLGGVGSHA-AAMLLRSGVGRLLLV-DFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~v-a~~LarsGVg~i~Li-D~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      +-||.|||+|++|... .+.|-.....++..+ |.+                .-+. +..    +.++.+  +.+  .  
T Consensus         4 kirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~----------------~~~~-~~~----~a~~~~--i~~--~--   56 (157)
T d1nvmb1           4 KLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGID----------------AASD-GLA----RAQRMG--VTT--T--   56 (157)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSC----------------TTCH-HHH----HHHHTT--CCE--E--
T ss_pred             CcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecc----------------hhcc-chh----hhhhcC--Ccc--c--
Confidence            4589999999999975 466655666666653 211                0111 111    111111  111  1  


Q ss_pred             cCCccchHHHh----cCCCCeEEEccCCH-HHHHHHHHHHHHcCCcEEEEc
Q 013180          162 LYDASSEEEIL----SGHPDFVLDCIDNI-DTKVALLAACVRRGLKVLCAT  207 (448)
Q Consensus       162 ~~~~~~~~~ll----~~~~D~VIda~Dn~-~~r~~l~~~c~~~~ip~I~~~  207 (448)
                         .++.++++    ..+.|+|++||.+- .......-.+.+.|+.+|+-.
T Consensus        57 ---~~~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          57 ---YAGVEGLIKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             ---SSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ---ccceeeeeecccccccCEEEEcCCchhHHHhHHHHHHHHcCCEEEEcc
Confidence               11222222    12489999999864 444444444568899999854

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.32  E-value=0.63  Score=38.89  Aligned_cols=34  Identities=32%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHc-CCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRS-GVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lars-GVg~i~LiD~D  117 (448)
                      .-+|+|||+|..|..-+..|... ++..+.++|.+
T Consensus         7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            34799999999999988887754 34556666643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.13  E-value=0.2  Score=45.09  Aligned_cols=29  Identities=38%  Similarity=0.558  Sum_probs=27.3

Q ss_pred             EEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           87 VVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        87 VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |+|||+|-.|..+|..|++.|. +++|+|.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~   30 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEA   30 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEec
Confidence            8999999999999999999997 7999985

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=87.98  E-value=0.68  Score=41.07  Aligned_cols=37  Identities=27%  Similarity=0.530  Sum_probs=31.4

Q ss_pred             HhhCCcEEEEcC-C--hHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           81 KVSGSYVVVIGL-G--GVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        81 kL~~~~VlVVG~-G--GvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +|++++|+|.|+ |  |+|.++|+.|++.|. ++.|.+.|.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~   42 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDR   42 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCCh
Confidence            588999999996 4  599999999999996 588877654

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.44  Score=42.29  Aligned_cols=29  Identities=34%  Similarity=0.637  Sum_probs=25.6

Q ss_pred             EEEEcCCh-HHHHHHHHHHHcCCceEEEEe
Q 013180           87 VVVIGLGG-VGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        87 VlVVG~GG-vGs~va~~LarsGVg~i~LiD  115 (448)
                      |+|.|..| +|++++..|+..|...++.+|
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d   31 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVD   31 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEE
Confidence            77887665 999999999999988899987

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.37  Score=39.08  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             CCcEEEEcCChHHHHHHHHHHH----cCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLR----SGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~Lar----sGVg~i~LiD~D  117 (448)
                      .++|+|||.|.+|+++|..|++    .|+ ++++++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccc
Confidence            5689999999999999999975    464 68888764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=87.48  E-value=0.24  Score=42.55  Aligned_cols=33  Identities=18%  Similarity=0.225  Sum_probs=29.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      -|+|||+|..|..+|..+++.|- ++.|||.+.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~~~   36 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQ-KCALIEAKEL   36 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-EEEEEeccCc
Confidence            48999999999999999999996 6999987643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.41  E-value=0.34  Score=40.70  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCceEEE
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg~i~L  113 (448)
                      +.+|+|.| +|++|..+++.+-..|...|.+
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~   56 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMIGARIYTT   56 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHHTCEEEEE
T ss_pred             CCEEEEECCCCCcccccchhhccccccceee
Confidence            46888877 5999999999999999876665

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=1.1  Score=40.99  Aligned_cols=76  Identities=14%  Similarity=0.085  Sum_probs=47.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      -+++++|+-|||| .|. ++.+++++|..++.-+|..                    +.+..+++...+.+-.-+|....
T Consensus        33 ~~~~~~VLDiGcG-~G~-lsl~aa~~Ga~~V~aid~s--------------------~~~~~a~~~~~~~~~~~~i~~~~   90 (311)
T d2fyta1          33 IFKDKVVLDVGCG-TGI-LSMFAAKAGAKKVLGVDQS--------------------EILYQAMDIIRLNKLEDTITLIK   90 (311)
T ss_dssp             GTTTCEEEEETCT-TSH-HHHHHHHTTCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEEE
T ss_pred             cCCcCEEEEECCC-CCH-HHHHHHHcCCCEEEEEeCH--------------------HHHHHHHHHHHHhCCCccceEEE
Confidence            3578999999999 443 5678899999999888763                    12334445555555455566655


Q ss_pred             ccCCccchHHHhcCCCCeEEE
Q 013180          161 LLYDASSEEEILSGHPDFVLD  181 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VId  181 (448)
                      .....-.   +-..++|+|+.
T Consensus        91 ~~~~~l~---~~~~~~D~Ivs  108 (311)
T d2fyta1          91 GKIEEVH---LPVEKVDVIIS  108 (311)
T ss_dssp             SCTTTSC---CSCSCEEEEEE
T ss_pred             eeHHHhc---CccccceEEEE
Confidence            4432211   11235899985

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.36  E-value=0.19  Score=42.95  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      .+++|+|||.|..|..+|.+|+|.|.. ..++|...
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~-v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELK-PLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCC-CEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCc-EEEEEeec
Confidence            357899999999999999999999985 66777443

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.34  E-value=0.3  Score=41.54  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc-eEEEEeCC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG-RLLLVDFD  117 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg-~i~LiD~D  117 (448)
                      .||+|||.|-+|.++|..|.+.+-+ +|++++.+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4799999999999999999998765 79999754

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.32  E-value=0.3  Score=41.74  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=29.8

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .-|+|||+|..|..+|.++++.|. ++.|||.+.+
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~-kV~vIEk~~~   37 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGNL   37 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEEESSCT
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-EEEEEecCCC
Confidence            458999999999999999999996 6899887654

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=87.25  E-value=0.12  Score=48.44  Aligned_cols=105  Identities=14%  Similarity=0.210  Sum_probs=66.2

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHc----------CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhh
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRS----------GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSS  149 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~Lars----------GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~  149 (448)
                      ++|.+.||+|+|+|+.|..+++.|+.+          +.++|.++|.+-+=..+-        .|.-..|...+    +.
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r--------~d~~~~k~~~a----~~   88 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR--------KEMNPRHVQFA----KD   88 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC--------SSCCGGGTTTC----BS
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC--------cccCHHHHHHH----Hh
Confidence            478899999999999999999999877          345799999875532211        12222221111    11


Q ss_pred             hCCCceEEEEeccCCccchHHHhc-CCCCeEEEccC--CHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          150 IFPECHIDAKVLLYDASSEEEILS-GHPDFVLDCID--NIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       150 inP~v~v~~~~~~~~~~~~~~ll~-~~~D~VIda~D--n~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      .++            ..+..+.+. -+++++|.++.  ..-++..+-..+.-+..|+|.+..
T Consensus        89 ~~~------------~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLS  138 (308)
T d1o0sa1          89 MPE------------TTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALS  138 (308)
T ss_dssp             SCC------------CCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECC
T ss_pred             ccc------------CCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEcc
Confidence            111            112333332 14788887764  334566677778888899999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.14  Score=43.56  Aligned_cols=34  Identities=24%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++.+|+|||.|..|..+|.+|+|.|.. .+|||..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~-v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQ-PVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCC-CEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCc-eEEEEee
Confidence            457899999999999999999999985 7777743

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.20  E-value=2.5  Score=38.29  Aligned_cols=32  Identities=28%  Similarity=0.356  Sum_probs=26.6

Q ss_pred             CcE-EEEcCCh-HHHHHHHHHHHcCCceEEEEeCC
Q 013180           85 SYV-VVIGLGG-VGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        85 ~~V-lVVG~GG-vGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|| +|.|+.| +|+++++.|...|. +++-+|..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY-EVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECC
Confidence            578 8888876 99999999999996 57777764

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.12  E-value=0.34  Score=38.04  Aligned_cols=34  Identities=15%  Similarity=0.080  Sum_probs=28.0

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcC--CceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSG--VGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsG--Vg~i~LiD~D  117 (448)
                      .++|+|||.|-+|.++|..|++.+  ..++++++..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc
Confidence            368999999999999999988763  2478998753

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.04  E-value=0.32  Score=42.18  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=34.5

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV  121 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~  121 (448)
                      .+.-++|+|+|+|-+|..++....+.|. +++++|-+.-.+
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~   65 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATK   65 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTH
T ss_pred             CcCCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHH
Confidence            4678999999999999999999999996 799999765443

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.94  E-value=0.38  Score=39.91  Aligned_cols=33  Identities=30%  Similarity=0.638  Sum_probs=27.8

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +.+|+|+|+|++|..++..+-..|. ++..+|.+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~   60 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAMGL-HVAAIDID   60 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCEEEEeeccccHHHHHHHHHHcCC-ccceecch
Confidence            5789999999999999999889994 67776543

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.92  E-value=0.92  Score=39.81  Aligned_cols=102  Identities=19%  Similarity=0.229  Sum_probs=54.6

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEeccC
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLLY  163 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~~  163 (448)
                      .||+|.|+ |-+|+++++.|...|. ++..+|...+              |+.-  .+.+.+.++...|++-+++-.  .
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~~--------------D~~d--~~~~~~~l~~~~~d~vih~a~--~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV-EVIPTDVQDL--------------DITN--VLAVNKFFNEKKPNVVINCAA--H   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTTC--------------CTTC--HHHHHHHHHHHCCSEEEECCC--C
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-EEEEeechhc--------------cCCC--HHHHHHHHHHcCCCEEEeecc--c
Confidence            36999998 9999999999999886 4565554332              2211  133445555555554333211  1


Q ss_pred             CccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcCCC
Q 013180          164 DASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATGAG  210 (448)
Q Consensus       164 ~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g~G  210 (448)
                      ..  ....... ++..  ...|......+.+.|...+..++..+...
T Consensus        63 ~~--~~~~~~~-~~~~--~~~n~~~~~~~~~~~~~~~~~~~~~ss~~  104 (281)
T d1vl0a_          63 TA--VDKCEEQ-YDLA--YKINAIGPKNLAAAAYSVGAEIVQISTDY  104 (281)
T ss_dssp             CC--HHHHHHC-HHHH--HHHHTHHHHHHHHHHHHHTCEEEEEEEGG
T ss_pred             cc--ccccccc-chhh--cccccccccccccccccccccccccccce
Confidence            10  0000000 0000  01123344566788888888887765543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=86.85  E-value=0.33  Score=44.20  Aligned_cols=36  Identities=22%  Similarity=0.462  Sum_probs=31.2

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ||+++.|+|-|+ +|+|..+|+.|++.|. ++.++|.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~   38 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKS   38 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            588999999976 7999999999999997 68887744

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=86.58  E-value=2.8  Score=38.23  Aligned_cols=97  Identities=13%  Similarity=0.117  Sum_probs=55.6

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEec
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVL  161 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~  161 (448)
                      ++++|+|+|+ |.+|+++++.|...|.. ++.+          .|..       ...+..    .+ ...+.+++  ...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~-V~~l----------~R~~-------~~~~~~----~~-~~~~~v~~--~~g   56 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHH-VRAQ----------VHSL-------KGLIAE----EL-QAIPNVTL--FQG   56 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCC-EEEE----------ESCS-------CSHHHH----HH-HTSTTEEE--EES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCe-EEEE----------ECCc-------chhhhh----hh-cccCCCEE--EEe
Confidence            4789999986 99999999999999964 5553          2221       111221    11 22345544  333


Q ss_pred             cC-Ccc-chHHHhcCCCCeEEEccC-----CHHHHHHHHHHHHHcCC-cEEE
Q 013180          162 LY-DAS-SEEEILSGHPDFVLDCID-----NIDTKVALLAACVRRGL-KVLC  205 (448)
Q Consensus       162 ~~-~~~-~~~~ll~~~~D~VIda~D-----n~~~r~~l~~~c~~~~i-p~I~  205 (448)
                      .+ +.. .....+.+ .|.++...+     +......+.++|.+.++ .++.
T Consensus        57 D~~d~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~agv~~~v~  107 (350)
T d1xgka_          57 PLLNNVPLMDTLFEG-AHLAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYI  107 (350)
T ss_dssp             CCTTCHHHHHHHHTT-CSEEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEE
T ss_pred             eCCCcHHHHHHHhcC-CceEEeecccccchhhhhhhHHHHHHHHhCCCceEE
Confidence            33 322 24455665 888776554     23333456677777664 4443

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.51  E-value=0.25  Score=43.93  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|++++|+|.|++   |+|..+|+.|++.|.. +.+.|.+
T Consensus         2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~-V~i~~~~   40 (258)
T d1qsga_           2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAE-LAFTYQN   40 (258)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCE-EEEEESS
T ss_pred             cCCCCEEEEECCCCchhHHHHHHHHHHHcCCE-EEEEeCC
Confidence            5889999999875   6999999999999976 7776643

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.50  E-value=0.3  Score=42.14  Aligned_cols=36  Identities=25%  Similarity=0.251  Sum_probs=31.3

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      .+..|+|||+|..|..+|..+++.|. +++|||.+.+
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~~~   39 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQAL   39 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCT
T ss_pred             cccCEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            35679999999999999999999995 6899987643

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.33  E-value=0.36  Score=41.39  Aligned_cols=36  Identities=25%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV  121 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~  121 (448)
                      --|+|||.|..|..+|.++++.| .++.|||.+.+--
T Consensus         4 yDviIIG~GpaG~~aA~~aar~G-~kV~vIEk~~~GG   39 (221)
T d3grsa1           4 YDYLVIGGGSGGLASARRAAELG-ARAAVVESHKLGG   39 (221)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTT-CCEEEEESSCTTH
T ss_pred             cCEEEECCCHHHHHHHHHHHHCC-CEEEEEeccCCCC
Confidence            34899999999999999999999 4699999876543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=86.16  E-value=1.4  Score=39.14  Aligned_cols=57  Identities=18%  Similarity=0.171  Sum_probs=38.5

Q ss_pred             CcEEEE--cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEecc
Q 013180           85 SYVVVI--GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKVLL  162 (448)
Q Consensus        85 ~~VlVV--G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~~~  162 (448)
                      -||+||  |.+|+|..+|+.|++.|. ++.+.|.+                   ..+.+.+.+.+++...  ++..+...
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~-------------------~~~l~~~~~~l~~~g~--~~~~~~~D   59 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARG-------------------EEGLRTTLKELREAGV--EADGRTCD   59 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC-------------------HHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC-------------------HHHHHHHHHHHHhcCC--cEEEEEee
Confidence            356555  557999999999999997 48886653                   2366667777776654  34444433


Q ss_pred             C
Q 013180          163 Y  163 (448)
Q Consensus       163 ~  163 (448)
                      +
T Consensus        60 v   60 (257)
T d2rhca1          60 V   60 (257)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=86.13  E-value=0.28  Score=44.08  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-C--hHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-G--GVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-G--GvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .|++++++|.|+ |  |+|..+|+.|+..|.. +.++|.
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~-V~i~~r   39 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGAT-LAFTYL   39 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCE-EEEEES
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCE-EEEEeC
Confidence            588999999997 4  7999999999999966 778773

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.94  E-value=0.33  Score=41.57  Aligned_cols=31  Identities=29%  Similarity=0.281  Sum_probs=27.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      --|+|||.|..|..+|.++++.|. ++.|||.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~-kV~vie~   34 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGF-KTTCIEK   34 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTC-CEEEEEC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            458999999999999999999996 5888875

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.83  E-value=0.29  Score=43.35  Aligned_cols=33  Identities=30%  Similarity=0.375  Sum_probs=29.1

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ...|+|||+|..|..+|..|++.|. ++.|+|..
T Consensus         4 ~~DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~   36 (253)
T d2gqfa1           4 YSENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNG   36 (253)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            3569999999999999999999996 58898864

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.83  E-value=0.41  Score=42.33  Aligned_cols=35  Identities=20%  Similarity=0.388  Sum_probs=30.9

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      |++++|+|.|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~   37 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARN   37 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            68999999986 7899999999999997 58888865

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.81  E-value=1.3  Score=39.62  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++++|.|+ +|+|..+|+.|+..|. ++.++|.+
T Consensus        11 ~L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~   47 (269)
T d1xu9a_          11 MLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARS   47 (269)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence            388999999987 5899999999999996 58886643

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.78  E-value=0.87  Score=40.04  Aligned_cols=37  Identities=19%  Similarity=0.229  Sum_probs=30.2

Q ss_pred             hCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccc
Q 013180           83 SGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVS  120 (448)
Q Consensus        83 ~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~  120 (448)
                      +.++|+|.|+ ||+|..+|+.|++.|. ++.++|...-+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~   38 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE   38 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc
Confidence            3688999987 7899999999999997 57788765433

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=85.73  E-value=0.33  Score=42.14  Aligned_cols=82  Identities=17%  Similarity=0.124  Sum_probs=53.0

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+++++|.|||+|.+|+.+|+.|...|.. +..+|...-...                 ..   ..   .          
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~-----------------~~---~~---~----------   89 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMD-IDYFDTHRASSS-----------------DE---AS---Y----------   89 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCE-EEEECSSCCCHH-----------------HH---HH---H----------
T ss_pred             eecccceEEeecccchHHHHHHHHhhccc-cccccccccccc-----------------hh---hc---c----------
Confidence            47899999999999999999999988866 555554322110                 00   00   0          


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACV  197 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~  197 (448)
                      .....++.++++.. .|+|+.+.. +.+++..+++...
T Consensus        90 ~~~~~~~l~~ll~~-sD~v~l~~plt~~T~~li~~~~l  126 (191)
T d1gdha1          90 QATFHDSLDSLLSV-SQFFSLNAPSTPETRYFFNKATI  126 (191)
T ss_dssp             TCEECSSHHHHHHH-CSEEEECCCCCTTTTTCBSHHHH
T ss_pred             cccccCCHHHHHhh-CCeEEecCCCCchHhheecHHHh
Confidence            00112356677775 899887664 5677777775544

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=85.71  E-value=0.35  Score=41.63  Aligned_cols=83  Identities=14%  Similarity=0.090  Sum_probs=54.1

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .|.+++|.|+|+|.+|..+++.|...|.. +..+|.......                       .....+    +.   
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~~~~~~-----------------------~~~~~~----~~---   89 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVH-LHYTDRHRLPES-----------------------VEKELN----LT---   89 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCE-EEEECSSCCCHH-----------------------HHHHHT----CE---
T ss_pred             eccccceeeccccccchhhhhhhhccCce-EEEEeecccccc-----------------------cccccc----cc---
Confidence            57899999999999999999999988874 666665422110                       000000    00   


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR  198 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~  198 (448)
                         ...+.++++.. +|+|+.+.. +.+++..+++...+
T Consensus        90 ---~~~~l~~~l~~-sD~v~~~~plt~~T~~li~~~~l~  124 (188)
T d2naca1          90 ---WHATREDMYPV-CDVVTLNCPLHPETEHMINDETLK  124 (188)
T ss_dssp             ---ECSSHHHHGGG-CSEEEECSCCCTTTTTCBSHHHHT
T ss_pred             ---ccCCHHHHHHh-ccchhhcccccccchhhhHHHHHH
Confidence               12345667765 999887665 56677777765544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.64  E-value=0.43  Score=42.58  Aligned_cols=36  Identities=22%  Similarity=0.555  Sum_probs=30.7

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+++.++|.|+ +|+|..+|+.|+..|. ++.+.|.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~   38 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIE   38 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            488999999976 7899999999999997 58887743

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=85.55  E-value=0.48  Score=40.68  Aligned_cols=36  Identities=19%  Similarity=0.425  Sum_probs=30.8

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++|.|+|+|.+|..+|+.|...|.. +...|.+
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~-v~~~d~~   76 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMY-VYFYDIE   76 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCE-EEEECSS
T ss_pred             cccceEEEEeecccchhhhhhhcccccce-Eeecccc
Confidence            48899999999999999999999888865 6666654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=85.38  E-value=0.49  Score=39.20  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=27.2

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -|+|||.|..|..+|..+++.|.. +.|||.+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~-v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIR-TGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCC-EEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCe-EEEEEEe
Confidence            489999999999999999999975 7777753

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.33  E-value=0.47  Score=40.78  Aligned_cols=34  Identities=32%  Similarity=0.292  Sum_probs=30.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcc
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQV  119 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V  119 (448)
                      -|+|||.|..|-.+|.++++.|-.++.|+|...+
T Consensus         5 DviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           5 DLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            4899999999999999999999889999987654

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.33  E-value=0.85  Score=40.71  Aligned_cols=53  Identities=17%  Similarity=0.192  Sum_probs=36.8

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCC
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPE  153 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~  153 (448)
                      |..+.|+|.|+ +|+|.++|+.|++.|..- .+.+..                  -..+.+.+.+.+++....
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~V-vi~~~~------------------~~~~~~~~~~~~~~~g~~   57 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASV-VVNYGS------------------SSKAAEEVVAELKKLGAQ   57 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEE-EEEESS------------------CHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEE-EEEcCC------------------ChHHHHHHHHHHHHcCCC
Confidence            67788888865 689999999999999874 443321                  113456666777766543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.21  E-value=0.26  Score=45.23  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=27.8

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|+|||+|-.|+.+|..|+..|. +++|+|..
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECC
Confidence            58999999999999999999994 69999863

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=85.05  E-value=1.6  Score=38.59  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=20.4

Q ss_pred             CcEEEE-cC-ChHHHHHHHHHHHcCCc
Q 013180           85 SYVVVI-GL-GGVGSHAAAMLLRSGVG  109 (448)
Q Consensus        85 ~~VlVV-G~-GGvGs~va~~LarsGVg  109 (448)
                      |+|+|| |+ +|+|..+|+.|++.|..
T Consensus         1 K~VvlITGas~GIG~aia~~la~~G~~   27 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARAARH   27 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHhCcc
Confidence            465544 55 79999999999999986

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=84.99  E-value=0.46  Score=42.97  Aligned_cols=36  Identities=36%  Similarity=0.503  Sum_probs=31.4

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCcccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSV  121 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~  121 (448)
                      .-|+|||.|..|..+|..|++.|. ++.|||-..+.-
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~~~g   52 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGA-KVILIEKEPVIG   52 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCCCC
Confidence            469999999999999999999996 589999776543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=84.99  E-value=6.9  Score=35.25  Aligned_cols=30  Identities=37%  Similarity=0.626  Sum_probs=25.2

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      .||+|.|. |-+|++++..|+..|. +++++|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~-~V~~~d   31 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH-DVIILD   31 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEE
Confidence            36999976 6699999999999994 577777

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=84.83  E-value=0.76  Score=40.77  Aligned_cols=35  Identities=34%  Similarity=0.626  Sum_probs=29.9

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ||+++.++|.|+ +|+|..+|+.|+..|. ++.+.|.
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r   37 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDR   37 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence            689999999976 5799999999999997 5777664

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.81  E-value=0.5  Score=41.77  Aligned_cols=36  Identities=31%  Similarity=0.491  Sum_probs=30.6

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -|+++.++|.|+ +|+|..+|+.|+..|. ++.++|.+
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~   38 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLP   38 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence            378888888866 6899999999999998 58888764

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.61  E-value=2.9  Score=38.14  Aligned_cols=30  Identities=33%  Similarity=0.582  Sum_probs=23.5

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      |-|||.| .|=+|++++..|...|. +++.+|
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d   32 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVAD   32 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEE
Confidence            3455665 57899999999999995 577776

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=84.60  E-value=1.3  Score=37.60  Aligned_cols=39  Identities=23%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             hHHHhcCCCCeEEEccCCHHHHHHHHHHHHHcCCcEEEEcC
Q 013180          168 EEEILSGHPDFVLDCIDNIDTKVALLAACVRRGLKVLCATG  208 (448)
Q Consensus       168 ~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~~ip~I~~~g  208 (448)
                      ..+++.+ .|+||+||..+.++..+..+. +.|+++|..++
T Consensus        72 ~~~~~~~-vDvViEcTG~f~~~~~~~~hl-~~G~K~vi~~~  110 (171)
T d1cf2o1          72 VDDMLDE-ADIVIDCTPEGIGAKNLKMYK-EKGIKAIFQGG  110 (171)
T ss_dssp             HHHHHHT-CSEEEECCSTTHHHHHHHHHH-HTTCEEEECTT
T ss_pred             hhHhhcC-CCEEEEccCCCCCHHHHHHHH-HcCCCEEEECC
Confidence            3444554 999999999999888777665 57888887654

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.44  E-value=0.88  Score=38.35  Aligned_cols=93  Identities=20%  Similarity=0.206  Sum_probs=51.1

Q ss_pred             CcEEEEcCChHHH--HHHHHHHHc---CCceEEEEeCCccccCCCcccccccCCccCchHHHHHH----HHHhhhCCCce
Q 013180           85 SYVVVIGLGGVGS--HAAAMLLRS---GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLK----KHFSSIFPECH  155 (448)
Q Consensus        85 ~~VlVVG~GGvGs--~va~~Lars---GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~----~~l~~inP~v~  155 (448)
                      .||.|||+|++|.  .++..+...   .+++|.|+|-|.                 ++.|.+++.    ..+...+..++
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e-----------------~~~~~~~~d~~~~~~~~~~~~~~~   64 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPE-----------------GKEKLEIVGALAKRMVEKAGVPIE   64 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGG-----------------GHHHHHHHHHHHHHHHHHTTCCCE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCc-----------------cHHHHHHHHHHHHHHHHhcCCCce
Confidence            4799999997764  444444433   357888887651                 112233222    23444566666


Q ss_pred             EEEEeccCCccchHHHhcCCCCeEEEccCCHHH--HHHHHHHHHHcCC
Q 013180          156 IDAKVLLYDASSEEEILSGHPDFVLDCIDNIDT--KVALLAACVRRGL  201 (448)
Q Consensus       156 v~~~~~~~~~~~~~~ll~~~~D~VIda~Dn~~~--r~~l~~~c~~~~i  201 (448)
                      +.....      ..+-+.+ .|+||.+.--...  .........++|+
T Consensus        65 ~~~~td------~~~al~g-aDvVv~ta~~~~~~~~~r~~~i~~~~gi  105 (169)
T d1s6ya1          65 IHLTLD------RRRALDG-ADFVTTQFRVGGLEARAKDERIPLKYGV  105 (169)
T ss_dssp             EEEESC------HHHHHTT-CSEEEECCCTTHHHHHHHHHHTGGGGTC
T ss_pred             eeecCC------chhhcCC-CCEEEEccccCCCCCeehhhhhhhhcCc
Confidence            665432      2333455 9999998865432  2233344445555

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.35  E-value=4.5  Score=33.03  Aligned_cols=100  Identities=18%  Similarity=0.037  Sum_probs=53.9

Q ss_pred             CcEEEEcC-ChHHHHHHHHHHHc---CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           85 SYVVVIGL-GGVGSHAAAMLLRS---GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        85 ~~VlVVG~-GGvGs~va~~Lars---GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      ++|.|||+ |-||.++...|..-   -+.+++.+-...               ..|+.        +........+..  
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~---------------s~g~~--------~~~~~~~~~~~~--   56 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ---------------LGQAA--------PSFGGTTGTLQD--   56 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS---------------TTSBC--------CGGGTCCCBCEE--
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccc---------------ccccc--------ccccCCceeeec--
Confidence            37999999 88999999766543   344555543221               11211        111111111110  


Q ss_pred             ccCCccchHHHhcCCCCeEEEccCCHHHHHHHHHHHHHc-CCcEEEEcCCCCccCCC
Q 013180          161 LLYDASSEEEILSGHPDFVLDCIDNIDTKVALLAACVRR-GLKVLCATGAGARADPT  216 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~Dn~~~r~~l~~~c~~~-~ip~I~~~g~G~k~dpt  216 (448)
                          .... +.+.+ +|++|.|+.+-.++....+++... ++++|+-++ ..+.+|.
T Consensus        57 ----~~~~-~~~~~-~DivF~a~~~~~s~~~~~~~~~~g~~~~VID~Ss-~fR~~~d  106 (146)
T d1t4ba1          57 ----AFDL-EALKA-LDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAAS-SLRMKDD  106 (146)
T ss_dssp             ----TTCH-HHHHT-CSEEEECSCHHHHHHHHHHHHHTTCCCEEEECSS-TTTTCTT
T ss_pred             ----ccch-hhhhc-CcEEEEecCchHHHHhhHHHHhcCCCeecccCCc-ccccCCC
Confidence                1111 22344 999999998877776666665432 245777543 3455554

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.23  E-value=0.33  Score=44.22  Aligned_cols=31  Identities=26%  Similarity=0.436  Sum_probs=27.1

Q ss_pred             cEEEEcCChHHHHHHHHHH-----HcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLL-----RSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~La-----rsGVg~i~LiD~D  117 (448)
                      -|+|||+|-+|+.+|..|+     +.|+. ++|+|..
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~-v~vlEr~   44 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLK-VRIIDKR   44 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCC-EEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCc-EEEEcCC
Confidence            4899999999999999997     57886 8899864

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.23  E-value=0.46  Score=41.27  Aligned_cols=31  Identities=32%  Similarity=0.351  Sum_probs=27.7

Q ss_pred             cEEEEcCChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      -|+|||.|..|..+|.+|+++|. ++.|||..
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~   38 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERY   38 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            48999999999999999999996 68888753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.16  E-value=0.46  Score=40.82  Aligned_cols=31  Identities=32%  Similarity=0.284  Sum_probs=27.5

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      --|+|||+|..|..+|.++++.|. ++.|||.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~-kV~lie~   36 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGF-NTACVEK   36 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CEEEEES
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCC-cEEEEEe
Confidence            458999999999999999999996 6888874

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.05  E-value=0.46  Score=42.37  Aligned_cols=34  Identities=29%  Similarity=0.384  Sum_probs=29.4

Q ss_pred             hhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |+++.++|.|++   |+|..+|+.|++.|.. +.+.|.
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~-V~i~~~   42 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAE-VALSYQ   42 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCE-EEEEES
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            789999999985   7999999999999975 777653

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.01  E-value=4.8  Score=36.36  Aligned_cols=32  Identities=34%  Similarity=0.476  Sum_probs=26.7

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+||+|.|+ |=+|+++++.|...|- +++.+|.
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld~   34 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGY-LPVVIDN   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcC-EEEEEEC
Confidence            478999965 7799999999999994 6777775

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.59  E-value=0.44  Score=43.92  Aligned_cols=32  Identities=25%  Similarity=0.234  Sum_probs=28.6

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      ...|+|||+|-.|-.+|..|.+.|+ .++|+|.
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek   38 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGR-SVHVIET   38 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTC-CEEEECS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCC-CEEEEEc
Confidence            3469999999999999999999998 5888874

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=83.58  E-value=4.4  Score=36.79  Aligned_cols=32  Identities=19%  Similarity=0.298  Sum_probs=25.4

Q ss_pred             CCcEEEEc-CChHHHHHHHHHHHcCCc-eEEEEe
Q 013180           84 GSYVVVIG-LGGVGSHAAAMLLRSGVG-RLLLVD  115 (448)
Q Consensus        84 ~~~VlVVG-~GGvGs~va~~LarsGVg-~i~LiD  115 (448)
                      -++|+|.| .|=+|++++..|...|-. +++.+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d   35 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLD   35 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEe
Confidence            47899998 577999999999999853 455555

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.61  Score=41.51  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      .|++++++|.|+ +|+|.++|+.|+..|. ++.++|.+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~   40 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRT   40 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECC
Confidence            378899999965 6899999999999997 58887753

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.18  E-value=0.62  Score=40.73  Aligned_cols=35  Identities=26%  Similarity=0.410  Sum_probs=30.1

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCc--eEEEEeCCcc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVG--RLLLVDFDQV  119 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg--~i~LiD~D~V  119 (448)
                      .||+|||.|..|-.+|.+.+++|..  ++.|+|.+.+
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~   38 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGI   38 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCT
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence            4799999999999999999999975  5788887654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.11  E-value=0.52  Score=42.34  Aligned_cols=38  Identities=24%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             HHHHhhCCcEEEEcCChHHHHHHHHHHH-cCCceEEEEeC
Q 013180           78 SQQKVSGSYVVVIGLGGVGSHAAAMLLR-SGVGRLLLVDF  116 (448)
Q Consensus        78 ~q~kL~~~~VlVVG~GGvGs~va~~Lar-sGVg~i~LiD~  116 (448)
                      .+.+..+.-|+|||+|..|..+|..|++ .|. +++|+|.
T Consensus        27 ~~~~~~e~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~   65 (278)
T d1rp0a1          27 DMITYAETDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQ   65 (278)
T ss_dssp             HHHHHTEEEEEEECCSHHHHHHHHHHHTSTTS-CEEEEES
T ss_pred             ccccccCCCEEEECCCHHHHHHHHHHHHccCC-eEEEEec
Confidence            3457778899999999999999999997 697 5889885

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.03  E-value=0.23  Score=41.00  Aligned_cols=28  Identities=36%  Similarity=0.612  Sum_probs=25.2

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCce
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGR  110 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~  110 (448)
                      ..+||+|||.|.+|+.+|..+++.|...
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCcc
Confidence            4679999999999999999999999753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.91  E-value=0.62  Score=38.32  Aligned_cols=33  Identities=30%  Similarity=0.637  Sum_probs=27.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .+.+|+|.|+|++|..++..+...|. ++.++|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~   59 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDI   59 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECS
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCC-eEeccCC
Confidence            46789999999999999888888887 5666553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=82.77  E-value=0.62  Score=39.58  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=28.9

Q ss_pred             CCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           84 GSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        84 ~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      +--|+|||.|..|..+|.+++|.|. ++.|||...
T Consensus         3 kYDviIIGgGpAGl~aA~~aar~G~-~V~viE~~~   36 (229)
T d3lada1           3 KFDVIVIGAGPGGYVAAIKSAQLGL-KTALIEKYK   36 (229)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTC-CEEEEECCB
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCC-eEEEEeccc
Confidence            3458999999999999999999995 588888653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.46  E-value=1.4  Score=38.93  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             HhhCCcEEEEcCC-hHHHHHHHHHHHcCCceEEEEeCCccccCC
Q 013180           81 KVSGSYVVVIGLG-GVGSHAAAMLLRSGVGRLLLVDFDQVSVSS  123 (448)
Q Consensus        81 kL~~~~VlVVG~G-GvGs~va~~LarsGVg~i~LiD~D~V~~sN  123 (448)
                      .|+++.++|.|++ |+|..+|+.|+..|. ++.++|.+.-...+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~   46 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKG   46 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcC
Confidence            4788999999775 899999999999995 58888877544433

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=82.39  E-value=0.62  Score=39.78  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             CCcEEEEcC-ChHHHHHHHHHHHcCC-c-----eEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           84 GSYVVVIGL-GGVGSHAAAMLLRSGV-G-----RLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        84 ~~~VlVVG~-GGvGs~va~~LarsGV-g-----~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      -.||.|+|+ |.+|+.++..|+...+ |     .|.|+|-+                 -.+.+++..+-.+........-
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~-----------------~~~~~l~g~~mdl~d~a~~~~~   86 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSE-----------------RSFQALEGVAMELEDSLYPLLR   86 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCG-----------------GGHHHHHHHHHHHHTTTCTTEE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCc-----------------cccchhcchhhhhccccccccc
Confidence            347999997 9999999999998765 2     34443322                 1234555555555555433322


Q ss_pred             EEEeccCCccchHHHhcCCCCeEEEccCC
Q 013180          157 DAKVLLYDASSEEEILSGHPDFVLDCIDN  185 (448)
Q Consensus       157 ~~~~~~~~~~~~~~ll~~~~D~VIda~Dn  185 (448)
                      ....   + .+..+-+.+ .|+||-+...
T Consensus        87 ~~~~---~-~~~~~~~~~-aDvVvi~ag~  110 (175)
T d7mdha1          87 EVSI---G-IDPYEVFED-VDWALLIGAK  110 (175)
T ss_dssp             EEEE---E-SCHHHHTTT-CSEEEECCCC
T ss_pred             Cccc---c-ccchhhccC-CceEEEeecc
Confidence            2111   1 123344454 9999977654

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=82.39  E-value=0.44  Score=43.55  Aligned_cols=40  Identities=25%  Similarity=0.253  Sum_probs=34.1

Q ss_pred             hCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCC
Q 013180           83 SGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSS  123 (448)
Q Consensus        83 ~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sN  123 (448)
                      +..-|+|||.|..|..+|..|++.|.. +.|++.+.+.-+|
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~~G~~-V~liEK~~~~~g~   43 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQKGLS-TIVLSLIPVKRSH   43 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHTTTCC-EEEECSSCGGGSG
T ss_pred             eecCEEEECcCHHHHHHHHHHHHCCCC-EEEEecCCCCCCc
Confidence            344599999999999999999999985 9999988776554

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=82.20  E-value=0.58  Score=41.89  Aligned_cols=29  Identities=34%  Similarity=0.419  Sum_probs=26.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEE
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLL  113 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~L  113 (448)
                      --|+|||.|-.|+++|.+.+|+|.+.+.|
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktlli   31 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLL   31 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEE
Confidence            35999999999999999999999997755

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.10  E-value=3.6  Score=37.74  Aligned_cols=77  Identities=13%  Similarity=0.071  Sum_probs=51.4

Q ss_pred             HHhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEE
Q 013180           80 QKVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAK  159 (448)
Q Consensus        80 ~kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~  159 (448)
                      .-+++++|+-||||. | .++..+++.|..+++.+|..                    +.++.+++..++.+-.-+|+.+
T Consensus        35 ~~~~~~~VLDlGcGt-G-~ls~~aa~~Ga~~V~avd~s--------------------~~~~~a~~~~~~~~~~~~i~~i   92 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGT-G-ILSMFAAKHGAKHVIGVDMS--------------------SIIEMAKELVELNGFSDKITLL   92 (328)
T ss_dssp             HHHTTCEEEEETCTT-S-HHHHHHHHTCCSEEEEEESS--------------------THHHHHHHHHHHTTCTTTEEEE
T ss_pred             ccCCcCEEEEeCCCC-C-HHHHHHHHhCCCEEEEEeCC--------------------HHHHHHHHHHHHhCccccceEE
Confidence            346899999999994 4 45678899999999988762                    2345566667766666667666


Q ss_pred             eccCCccchHHHhcCCCCeEEE
Q 013180          160 VLLYDASSEEEILSGHPDFVLD  181 (448)
Q Consensus       160 ~~~~~~~~~~~ll~~~~D~VId  181 (448)
                      ......-.   +-..++|+|+.
T Consensus        93 ~~~~~~l~---~~~~~~D~i~s  111 (328)
T d1g6q1_          93 RGKLEDVH---LPFPKVDIIIS  111 (328)
T ss_dssp             ESCTTTSC---CSSSCEEEEEE
T ss_pred             Eeehhhcc---CcccceeEEEE
Confidence            55433211   11235898875

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.08  E-value=0.73  Score=41.19  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=31.0

Q ss_pred             HhhCCcEEEEc-CChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           81 KVSGSYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        81 kL~~~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      +|+++.++|-| .+|+|..+|+.|+..|. ++.+.|.+
T Consensus         2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~   38 (248)
T d2d1ya1           2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLR   38 (248)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence            57889999997 57999999999999997 68887753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=82.03  E-value=0.47  Score=42.60  Aligned_cols=36  Identities=28%  Similarity=0.518  Sum_probs=30.4

Q ss_pred             HHhhCCcEEEEcC-ChHHHHHHHHHHHcCCceEEEEeC
Q 013180           80 QKVSGSYVVVIGL-GGVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        80 ~kL~~~~VlVVG~-GGvGs~va~~LarsGVg~i~LiD~  116 (448)
                      .||+++.++|.|+ +|+|..+|+.|+..|.. +.+.|.
T Consensus         2 nrL~gK~alITGas~GIG~aia~~la~~Ga~-V~~~~~   38 (253)
T d1hxha_           2 NRLQGKVALVTGGASGVGLEVVKLLLGEGAK-VAFSDI   38 (253)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCE-EEEECS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence            3789999999875 68999999999999975 777664

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.00  E-value=1.4  Score=39.06  Aligned_cols=64  Identities=19%  Similarity=0.211  Sum_probs=46.4

Q ss_pred             hhCCcEEEEcC-ChHHHHHHHHHHHc---CCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEE
Q 013180           82 VSGSYVVVIGL-GGVGSHAAAMLLRS---GVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHID  157 (448)
Q Consensus        82 L~~~~VlVVG~-GGvGs~va~~Lars---GVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~  157 (448)
                      |+++.++|-|+ +|+|..+|+.|++.   |. ++.++|.+                   ..|.+.+++.|...+|..++.
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~-------------------~~~l~~~~~~l~~~~~~~~~~   63 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARS-------------------ESMLRQLKEELGAQQPDLKVV   63 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESC-------------------HHHHHHHHHHHHHHCTTSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECC-------------------HHHHHHHHHHHHhhcCCceEE
Confidence            45555555566 69999999999984   43 57775432                   457788889999999988888


Q ss_pred             EEeccCCc
Q 013180          158 AKVLLYDA  165 (448)
Q Consensus       158 ~~~~~~~~  165 (448)
                      .+...++.
T Consensus        64 ~~~~Dvs~   71 (259)
T d1oaaa_          64 LAAADLGT   71 (259)
T ss_dssp             EEECCTTS
T ss_pred             EEEccCCC
Confidence            77655543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.86  E-value=0.37  Score=40.49  Aligned_cols=32  Identities=22%  Similarity=0.286  Sum_probs=23.6

Q ss_pred             cEEEEcCChHHHHHHHHHHHc-----CCceEEEEeCC
Q 013180           86 YVVVIGLGGVGSHAAAMLLRS-----GVGRLLLVDFD  117 (448)
Q Consensus        86 ~VlVVG~GGvGs~va~~Lars-----GVg~i~LiD~D  117 (448)
                      ||.|||+|++|...+......     .+++|.|+|-|
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did   38 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDID   38 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecC
Confidence            799999999998777543322     25789998744

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.79  E-value=0.65  Score=39.35  Aligned_cols=36  Identities=33%  Similarity=0.601  Sum_probs=32.6

Q ss_pred             hhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCc
Q 013180           82 VSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQ  118 (448)
Q Consensus        82 L~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~  118 (448)
                      |..++|+|+|.|-+|..+|..|...|. ++.+.|.|.
T Consensus        22 l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp   57 (163)
T d1li4a1          22 IAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDP   57 (163)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCH
T ss_pred             ecCCEEEEeccccccHHHHHHHHhCCC-eeEeeeccc
Confidence            678999999999999999999999994 588888885

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=81.75  E-value=0.52  Score=40.26  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=33.2

Q ss_pred             CcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCccc
Q 013180           85 SYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRH  127 (448)
Q Consensus        85 ~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq  127 (448)
                      .||.|||+|=||..+|..|+ .|. ++..+|-|.=....|+..
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~-~V~g~Din~~~v~~l~~g   41 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQN-EVTIVDILPSKVDKINNG   41 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTS-EEEEECSCHHHHHHHHTT
T ss_pred             CEEEEECCChhHHHHHHHHH-CCC-cEEEEECCHHHHHHHhhc
Confidence            37999999999999998886 586 788999887666666654

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=81.70  E-value=0.57  Score=40.13  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEE
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      .+++++|+|||+|-.|..+|..|+..+.....++
T Consensus        29 ~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~   62 (235)
T d1w4xa2          29 DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQ   62 (235)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHhhhccccccc
Confidence            4789999999999999999999999998766664

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=81.67  E-value=2.2  Score=39.60  Aligned_cols=32  Identities=38%  Similarity=0.501  Sum_probs=25.5

Q ss_pred             CcEEEEcCCh-HHHHHHHHHHHcCCceEEEEeC
Q 013180           85 SYVVVIGLGG-VGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        85 ~~VlVVG~GG-vGs~va~~LarsGVg~i~LiD~  116 (448)
                      .||+|.|+.| +||++++.|.+.+=-+++++|.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            5799997655 9999999998754457899884

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=81.54  E-value=1.2  Score=39.24  Aligned_cols=30  Identities=50%  Similarity=0.722  Sum_probs=26.2

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEE
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLV  114 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~Li  114 (448)
                      ..|+|.| .||+|..+|+.|++.|..+|.|+
T Consensus        10 gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~   40 (259)
T d2fr1a1          10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLV   40 (259)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            5677777 69999999999999999988884

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.49  E-value=4.6  Score=35.05  Aligned_cols=51  Identities=20%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             EEEE--cCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceE
Q 013180           87 VVVI--GLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHI  156 (448)
Q Consensus        87 VlVV--G~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v  156 (448)
                      |.||  |.+|+|..+|+.|++.|. ++.+.|.+.                  ..+.+.+.+.+.+..+.-.+
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~------------------~~~~~~~~~~~~~~~~~~~~   55 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHS------------------EGAAQRLVAELNAARAGSAV   55 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC------------------HHHHHHHHHHHHHHSTTCEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCc------------------hHHHHHHHHHHHhhcCCceE
Confidence            4444  557899999999999997 688876331                  13456677777777665433

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.07  E-value=0.65  Score=41.90  Aligned_cols=34  Identities=24%  Similarity=0.449  Sum_probs=29.4

Q ss_pred             hhCCcEEEEcCC---hHHHHHHHHHHHcCCceEEEEeC
Q 013180           82 VSGSYVVVIGLG---GVGSHAAAMLLRSGVGRLLLVDF  116 (448)
Q Consensus        82 L~~~~VlVVG~G---GvGs~va~~LarsGVg~i~LiD~  116 (448)
                      |++++++|.|++   |+|..+|+.|++.|.. +.+.|.
T Consensus         6 L~gK~alVTGass~~GIG~aiA~~la~~Ga~-Vvi~~~   42 (297)
T d1d7oa_           6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAE-ILVGTW   42 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCE-EEEEEE
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence            789999999996   7999999999999966 666553

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.98  E-value=1.6  Score=35.04  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             hhCCcEEEEcC----ChHHHHHHHHHHHcCCceEEEEeCC
Q 013180           82 VSGSYVVVIGL----GGVGSHAAAMLLRSGVGRLLLVDFD  117 (448)
Q Consensus        82 L~~~~VlVVG~----GGvGs~va~~LarsGVg~i~LiD~D  117 (448)
                      ++-++|+|||+    |..|..++++|...|-++|..|-+.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~   45 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIK   45 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccC
Confidence            45689999998    7899999999987776899887664

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.89  E-value=1.2  Score=37.74  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=25.8

Q ss_pred             CcEEEEc-CChHHHHHHHHHHHcCCceEEEEe
Q 013180           85 SYVVVIG-LGGVGSHAAAMLLRSGVGRLLLVD  115 (448)
Q Consensus        85 ~~VlVVG-~GGvGs~va~~LarsGVg~i~LiD  115 (448)
                      ..|+|-| +||||+.+++..-..|...+..++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~   63 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGIC   63 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceeccc
Confidence            5688888 599999999998889998777643

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.84  E-value=0.7  Score=39.56  Aligned_cols=81  Identities=20%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             HhhCCcEEEEcCChHHHHHHHHHHHcCCceEEEEeCCccccCCCcccccccCCccCchHHHHHHHHHhhhCCCceEEEEe
Q 013180           81 KVSGSYVVVIGLGGVGSHAAAMLLRSGVGRLLLVDFDQVSVSSLNRHAVATRADVGTPKALCLKKHFSSIFPECHIDAKV  160 (448)
Q Consensus        81 kL~~~~VlVVG~GGvGs~va~~LarsGVg~i~LiD~D~V~~sNLnRq~l~~~~dvG~~Kv~~~~~~l~~inP~v~v~~~~  160 (448)
                      .+.+++|.|+|+|.+|..+++.|..-|. ++..+|.-.                   .+....     ..  .+      
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~-------------------~~~~~~-----~~--~~------   87 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYV-------------------SPARAA-----QL--GI------   87 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTS-------------------CHHHHH-----HH--TC------
T ss_pred             cccceeeeeccccchhHHHHHHhhhccc-eEEeecCCC-------------------ChhHHh-----hc--Cc------
Confidence            5789999999999999999999988875 455544321                   011000     00  01      


Q ss_pred             ccCCccchHHHhcCCCCeEEEccC-CHHHHHHHHHHHHH
Q 013180          161 LLYDASSEEEILSGHPDFVLDCID-NIDTKVALLAACVR  198 (448)
Q Consensus       161 ~~~~~~~~~~ll~~~~D~VIda~D-n~~~r~~l~~~c~~  198 (448)
                         ...+.++++.. +|+|+.+.. +.+++..+++-...
T Consensus        88 ---~~~~l~ell~~-sDiv~~~~Plt~~T~~lin~~~l~  122 (184)
T d1ygya1          88 ---ELLSLDDLLAR-ADFISVHLPKTPETAGLIDKEALA  122 (184)
T ss_dssp             ---EECCHHHHHHH-CSEEEECCCCSTTTTTCBCHHHHT
T ss_pred             ---eeccHHHHHhh-CCEEEEcCCCCchhhhhhhHHHHh
Confidence               11346678875 999998775 66788777755443