Citrus Sinensis ID: 013190

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
Protein Sequence
MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccHHHHHccccccccccccccccccccccccccccHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHcccEEEccccccccEEEEccccccccHHHHEEcccccEEEEEEEcccccccccccHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEcc
Coil and Loop (DISEMBL)
MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQqenrrapesnqahevvegkdegkkhddqvmvprqfiglgpsaetdhevsncssdeertlsgtppniveAASKehvnsngkneivsFDDQAAAAAAAENsngkrigreespesetqgwgpnnkvqklssakgidqsneATMRKARVSVrarseapmitdgcqwrkygqkmakgnpcprayyrctmavgcpvrkqvqrCAEDRTILITtyegnhnhplppaamAMASTTTAAASMLLSgsmssadgimnpnlLARAilpcsssmatisasapfptvtldlthspnplqLQRQAAQFQvqfpgqpqnlasvtntqlpqvFGQALynqskfsglqlsqnigsnsqsgshqtlppplqqpqqLADTVSAATAAITADPNFTAALAAAITSIIggaqnpfsnnsnnnnrsciiftnfffqy
Flexible Loop (DISEMBL)
mntenqrlRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVvegkdegkkhddqvMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAensngkrigreespesetqgwgpnnkvqklssakgidqsneatmrkarvsvrarseapmitdgcqwrkygqKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNpfsnnsnnnnrsCIIFTNFFFQY
Low Complexity Region (SEG)
MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQaaaaaaaENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHplppaamamastttaaasmllsgsmssaDGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPlqlqrqaaqfqvqfPGQPQNLASVTNTQLPQVFGQALYNQSKFSGlqlsqnigsnsqsgsHQTlppplqqpqqlADTVSAATAAITADPNFtaalaaaitsiiggaQNPFsnnsnnnnRSCIIFTNFFFQY
Disordered region (IsUnstruct)
**************VTNNYNALQMHIIAL**************************************************************************************************************************************************************MITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGN************************************PNLLARAILPCSSSMATI*****FPTVTL***********************************QLPQVFGQALYN*****************************************ATAAITADPNFTAALAAAITSIIGGAQN*********NRSCIIFTNFFF**
Disordered Region (DISOPRED)
MNTENQRLRDMLSQVTNNYNALQMHII*********************************************************************************************************************************************************RARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP***************************************************************************************************************************************************SAATAAITADPNFTAALAAAITS***********************TNFFFQY
Disordered Region (DISEMBL)
********RDMLSQVTNNYNALQMHIIALMQQ*************************HDDQVMVPRQFIGLGPS*******************GTPPNIVEAASKEHVNSNGKNEIVSFDDQ*****************************PNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQN****************************AATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Disordered Region (DISPRO)
MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQEN*********HEVVEGKDEGK********************************************************************************************************************MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL***************************************************SAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGL*L***************************DTVSAATAAITADPNFTAALAAAITSIIGG***************CIIFTNFFFQ*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIGGAQNPFSNNSNNNNRSCIIFTNFFFQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	448	2.2.26 [Sep-21-2011]
Q9XEC3	528	Probable WRKY transcripti	yes	no	0.792	0.672	0.556	1e-112
Q9C519	553	WRKY transcription factor	no	no	0.830	0.672	0.563	1e-110
Q93WT0	538	Probable WRKY transcripti	no	no	0.828	0.689	0.574	5e-98
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.446	0.408	0.498	2e-49
Q9LXG8	548	Probable WRKY transcripti	no	no	0.868	0.709	0.337	2e-49
Q8VWV6	480	Probable WRKY transcripti	no	no	0.892	0.833	0.342	2e-44
Q9C9F0	374	Probable WRKY transcripti	no	no	0.234	0.280	0.688	3e-40
Q9CAR4	387	Probable WRKY transcripti	no	no	0.642	0.744	0.375	1e-39
Q8S8P5	519	Probable WRKY transcripti	no	no	0.200	0.173	0.505	8e-23
Q9C5T4	310	WRKY transcription factor	no	no	0.254	0.367	0.426	2e-21

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  405 bits (1042), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/440 (55%), Positives = 287/440 (65%), Gaps = 85/440 (19%)

Query: 4   ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGK-KHDDQV 62
           +NQRL+ MLSQ TNN+N+LQM ++A+M+QQ+++             E  D  K +H+   
Sbjct: 126 DNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLA-------TTENNDNVKNRHEVPE 178

Query: 63  MVPRQFIGLGPSAETDHEVSNCSSDEERTL--SGTPPNIVEAASKEHVNSNGKNEIVSFD 120
           MVPRQFI LGP ++   EVS+    EERT   SG+PP+++E +S                
Sbjct: 179 MVPRQFIDLGPHSD---EVSS----EERTTVRSGSPPSLLEKSSSRQ------------- 218

Query: 121 DQAAAAAAAENSNGKRI-GREESPESETQGWGPNNKVQKL--------------SSAKGI 165
                       NGKR+  REESPE+E+ GW   NKV K               +S+K I
Sbjct: 219 ------------NGKRVLVREESPETESNGWRNPNKVPKHHASSSICGGNGSENASSKVI 266

Query: 166 DQ-SNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 224
           +Q + EATMRKARVSVRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR
Sbjct: 267 EQAAAEATMRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 326

Query: 225 KQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGS-MSSADGIMNP-N 282
           KQVQRCAEDRTILITTYEGNHNHPLPPAAM MASTTTAAASMLLSGS MS+ DG+MNP N
Sbjct: 327 KQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTN 386

Query: 283 LLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVT 342
           LLAR ILPCSSSMATISASAPFPT+TLDLT S              +QF  Q   L  + 
Sbjct: 387 LLARTILPCSSSMATISASAPFPTITLDLTES---PNGNNPTNNPLMQF-SQRSGLVELN 442

Query: 343 NTQLPQVFGQALY--NQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATA 400
            + LP + GQALY   QSKFSGL +                     QP    ++VSAATA
Sbjct: 443 QSVLPHMMGQALYYNQQSKFSGLHMP-------------------SQPLNAGESVSAATA 483

Query: 401 AITADPNFTAALAAAITSII 420
           AI ++PNF AALAAAITSII
Sbjct: 484 AIASNPNFAAALAAAITSII 503

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  399 bits (1025), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 253/449 (56%), Positives = 301/449 (67%), Gaps = 77/449 (17%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDD 60
           M  +NQ+LR++L+QV+N+Y +LQMH+++LMQQQQ+     ++N+  E  E  +E      
Sbjct: 167 MTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQ-----QNNKVIEAAEKPEE------ 215

Query: 61  QVMVPRQFIGLGPSAETDH--EVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVS 118
             +VPRQFI LGP+       +VSN SS E+RT SG                        
Sbjct: 216 -TIVPRQFIDLGPTRAVGEAEDVSNSSS-EDRTRSG------------------------ 249

Query: 119 FDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAK--GIDQSNEATMRKA 176
                 ++AA   SNGKR+GREESPE+E+      NK+QK++S      DQ+ EATMRKA
Sbjct: 250 -----GSSAAERRSNGKRLGREESPETES------NKIQKVNSTTPTTFDQTAEATMRKA 298

Query: 177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTI 236
           RVSVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+I
Sbjct: 299 RVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSI 358

Query: 237 LITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNP-NLLARAILPCSSSM 295
           LITTYEGNHNHPLPPAA+AMASTTTAAA+MLLSGSMSS DG+MNP NLLARA+LPCS+SM
Sbjct: 359 LITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSM 418

Query: 296 ATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQ--------VQFP-GQPQNLASVTNTQL 346
           ATISASAPFPTVTLDLTHSP P      ++           +Q P  Q Q + ++    L
Sbjct: 419 ATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGML 478

Query: 347 PQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADP 406
           P V GQALYNQSKFSGLQ S         GS  T      Q   +ADT++    A+TADP
Sbjct: 479 PHVIGQALYNQSKFSGLQFS--------GGSPST--AAFSQSHAVADTIT----ALTADP 524

Query: 407 NFTAALAAAITSIIGGAQNPFSNNSNNNN 435
           NFTAALAA I+S+I G  N      NN N
Sbjct: 525 NFTAALAAVISSMINGT-NHHDGEGNNKN 552

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  358 bits (919), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 258/449 (57%), Positives = 299/449 (66%), Gaps = 78/449 (17%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVV-EGKDEGKKHD 59
           M  ENQRLRDMLSQ T N+NALQM ++A+M+QQ++      S+Q H +  E K EG+K  
Sbjct: 121 MKIENQRLRDMLSQATTNFNALQMQLVAVMRQQEQR----NSSQDHLLAQESKAEGRKRQ 176

Query: 60  D-QVMVPRQFIGLGPSAETDHEVSNCSSDEERTL-SGTPPNIVEAASKEHVNSNGKNEIV 117
           + Q+MVPRQF+ LGPS+      +  SS+E  T+ SG+PP+++E+++             
Sbjct: 177 ELQIMVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLESSNPRE---------- 226

Query: 118 SFDDQAAAAAAAENSNGKRI-GREESPESETQ-GWGPNNKVQKLSSAKG----------I 165
                          NGKR+ GREES E      WG  NKV K + +            I
Sbjct: 227 ---------------NGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVI 271

Query: 166 DQSN-EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 224
           DQS  EATMRKARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVR
Sbjct: 272 DQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVR 331

Query: 225 KQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNP-NL 283
           KQVQRCAEDR+ILITTYEGNHNHPLPPAA AMASTTTAAASMLLSGSMSS DG+MNP NL
Sbjct: 332 KQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNL 391

Query: 284 LARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTN 343
           LARAILPCSSSMATISASAPFPT+TLDLT+SPN            +QF  +P    +V  
Sbjct: 392 LARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV-- 449

Query: 344 TQLPQVFGQALYN---QSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADT------ 394
             LPQV GQA+YN   QSKFSGLQL                     QP Q+A T      
Sbjct: 450 --LPQVVGQAMYNNQQQSKFSGLQLP-------------------AQPLQIAATSSVAES 488

Query: 395 VSAATAAITADPNFTAALAAAITSIIGGA 423
           VSAA+AAI +DPNF AALAAAITSI+ G+
Sbjct: 489 VSAASAAIASDPNFAAALAAAITSIMNGS 517

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  197 bits (501), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 132/265 (49%), Positives = 157/265 (59%), Gaps = 65/265 (24%)

Query: 174 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 233
           RKARVSVRARS+A  + DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED
Sbjct: 223 RKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 282

Query: 234 RTILITTYEGNHNHPLPPAAMAMASTTTAAASM------------LLSGSMSSADGIMNP 281
            TIL TTYEGNHNHPLPP+A AMA+TT+AAA+M             LS   +++      
Sbjct: 283 TTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGSSSSNLHQTLSSPSATSSSSFYH 342

Query: 282 NLLARAILPCSSSMATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQF------PGQP 335
           N       P +S++AT+SASAPFPT+TLDLT   NP +  +   QF  Q+      P   
Sbjct: 343 NF------PYTSTIATLSASAPFPTITLDLT---NPPRPLQPPPQFLSQYGPAAFLPNAN 393

Query: 336 QNLASVTNTQ---LPQVFGQALYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLA 392
           Q  +   N Q   +P +FG                                P   P+++ 
Sbjct: 394 QIRSMNNNNQQLLIPNLFG--------------------------------PQAPPREMV 421

Query: 393 DTVSAATAAITADPNFTAALAAAIT 417
           D+V AA   I  DPNFTAALAAAI+
Sbjct: 422 DSVRAA---IAMDPNFTAALAAAIS 443

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 166/492 (33%), Positives = 246/492 (50%), Gaps = 103/492 (20%)

Query: 4   ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESN----------------QAHE 47
           EN++L+ ML ++ ++Y +L++    ++QQ+  N      N                Q  E
Sbjct: 49  ENEKLKGMLERIESDYKSLKLRFFDIIQQEPSNTATKNQNMVDHPKPTTTDLSSFDQERE 108

Query: 48  VVEGKDEGKKHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEH 107
           +V      +       VP++        +TD   +  ++DEE T +G    I        
Sbjct: 109 LVSLSLGRRSSSPSDSVPKK------EEKTDAISAEVNADEELTKAGLTLGIN------- 155

Query: 108 VNSNGK--NEIVSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGI 165
            N NG    E +S +++A + +    + GK  G+  SP                + A G 
Sbjct: 156 -NGNGGEPKEGLSMENRANSGSEEAWAPGKVTGKRSSP----------------APASGG 198

Query: 166 DQSNEAT----MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGC 221
           D   EA     +++ARV VRAR + P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A GC
Sbjct: 199 DADGEAGQQNHVKRARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGC 258

Query: 222 PVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSS-ADGIMN 280
           PVRKQVQRCA+D +ILITTYEG H+H LP +A  MASTT+AAASMLLSGS SS A  ++ 
Sbjct: 259 PVRKQVQRCADDMSILITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIG 318

Query: 281 PNLLARAILPCSS-SMATISASAPF-PTVTLDLT---------HSPNPLQLQRQAAQFQV 329
            NL   +    ++ S  + +  +P  PTVTLDLT          S   L   + +  FQ 
Sbjct: 319 NNLYDNSRFNNNNKSFYSPTLHSPLHPTVTLDLTAPQHSSSSSSSLLSLNFNKFSNSFQ- 377

Query: 330 QFP-------GQPQNLASVTNTQLPQVFGQAL--YNQSKFSGLQL-SQNIGSNSQSGSHQ 379
           +FP             ++ +   LP ++G     Y    ++ +Q  + N+G         
Sbjct: 378 RFPSTSLNFSSTSSTSSNPSTLNLPAIWGNGYSSYTPYPYNNVQFGTSNLGKT------- 430

Query: 380 TLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSIIG--------GAQNPFSN-- 429
                +Q  Q L +T+   T A+T+DP+F + +AAAI++++G        G ++  SN  
Sbjct: 431 -----VQNSQSLTETL---TKALTSDPSFHSVIAAAISTMVGSNGEQQIVGPRHSISNNI 482

Query: 430 ---NSNNNNRSC 438
              N+ NNN+ C
Sbjct: 483 QQTNTTNNNKGC 494

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score =  180 bits (457), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 242/476 (50%), Gaps = 76/476 (15%)

Query: 4   ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVM 63
           EN+RL+  LS++  +++ LQ     LM +  E  +    ++ H   +G+DE +   ++V 
Sbjct: 7   ENRRLKSSLSKIKKDFDILQTQYNQLMAKHNEPTKF--QSKGHHQDKGEDEDR---EKVN 61

Query: 64  VPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQA 123
              + + L      + EV + S+ EE+       ++ EA    + + N K+ I       
Sbjct: 62  EREELVSLSLGRRLNSEVPSGSNKEEKN-----KDVEEAEGDRNYDDNEKSSIQGLS-MG 115

Query: 124 AAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEAT----------M 173
               A  N N +++  + + E+ +     NNK++  +S    +  ++            +
Sbjct: 116 IEYKALSNPN-EKLEIDHNQETMSLEISNNNKIRSQNSFGFKNDGDDHEDEDEILPQNLV 174

Query: 174 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 233
           +K RVSVR+R E P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+ED
Sbjct: 175 KKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSED 234

Query: 234 RTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGI-----MNPNLLARAI 288
            +ILI+TYEG HNHPLP +A AMAS T+AAASMLLSG+ SS+        +N +L    I
Sbjct: 235 MSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGLNFSLSGNNI 294

Query: 289 LPCSSSMATIS-ASAPFPTVTLDLTHSPNPLQ-----LQRQAA-----QFQVQFPGQPQN 337
            P   +    S +S+  PTVTLDLT S +  Q     L R ++          +P    N
Sbjct: 295 TPKPKTHFLQSPSSSGHPTVTLDLTTSSSSQQPFLSMLNRFSSPPSNVSRSNSYPSTNLN 354

Query: 338 LASVTNT------------QLPQVFGQA-LYNQSKFSGLQLSQNIGSN-----SQSGSHQ 379
            ++ TNT            Q    +G    + QS +  +  ++  GS+       S SH 
Sbjct: 355 FSNNTNTLMNWGGGGNPSDQYRAAYGNINTHQQSPYHKIIQTRTAGSSFDPFGRSSSSHS 414

Query: 380 TLPPPL-------------QQPQQLADTVSAATAAITADPNFTAALAAAITSIIGG 422
              P +             Q P   A+T+     AIT DP+F +ALA A++SI+GG
Sbjct: 415 ---PQINLDHIGIKNIISHQVPSLPAETI----KAITTDPSFQSALATALSSIMGG 463

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 75/109 (68%), Positives = 85/109 (77%), Gaps = 4/109 (3%)

Query: 174 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 233
           RKARVSVRAR E   + DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED
Sbjct: 219 RKARVSVRARCETATMNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLED 278

Query: 234 RTILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPN 282
            +ILITTYEG HNHPLP  A AMAST + +  +LL     S+D + +P+
Sbjct: 279 MSILITTYEGTHNHPLPVGATAMASTASTSPFLLL----DSSDNLSHPS 323

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAR4|WRK36_ARATH Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1

 Score =  164 bits (415), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/320 (37%), Positives = 174/320 (54%), Gaps = 32/320 (10%)

Query: 4   ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVM 63
           EN++L+ +LS + NNYN+LQM +  ++ QQQ       S+   + ++ +DE   +D  + 
Sbjct: 39  ENEKLKLLLSTILNNYNSLQMQVSKVLGQQQ-----GASSMELDHIDRQDENNDYDVDIS 93

Query: 64  VPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVN-SNGKNEIVSFDDQ 122
                + LG S              E+ +S    N V+  S ++V  S  K   + F  Q
Sbjct: 94  -----LRLGRS--------------EQKISKKEENKVDKISTKNVEESKDKRSALGFGFQ 134

Query: 123 AAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEAT-MRKARVSVR 181
             +  A++  +  R  +  + E++      + K  +  + + + + +E T ++K RV V+
Sbjct: 135 IQSYEASKLDDLCRQVKLANAENKCVSSRKDVKSVRNENHQDVLEEHEQTGLKKTRVCVK 194

Query: 182 ARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT-ILITT 240
           A  E P I DGCQWRKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC E+ T   +TT
Sbjct: 195 ASCEDPSINDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTT 254

Query: 241 YEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATISA 300
           YEGNH+HPLP  A  MA+ T+AAAS+L SGS SS+    + +       P      +IS 
Sbjct: 255 YEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSS---SSTSASLSYFFPFHH--FSIST 309

Query: 301 SAPFPTVTLDLTHSPNPLQL 320
           +   PTVTLDLT    P QL
Sbjct: 310 TNSHPTVTLDLTRPNYPNQL 329

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S8P5|WRK33_ARATH Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2

 Score =  108 bits (270), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 64/91 (70%), Gaps = 1/91 (1%)

Query: 172 TMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCA 231
           T+R+ R+ V+  S+  ++ DG +WRKYGQK+ KGNP PR+YY+CT  +GCPVRK V+R +
Sbjct: 344 TVREPRIVVQTTSDIDILDDGYRWRKYGQKVVKGNPNPRSYYKCT-TIGCPVRKHVERAS 402

Query: 232 EDRTILITTYEGNHNHPLPPAAMAMASTTTA 262
            D   +ITTYEG HNH +P A  +  +T  A
Sbjct: 403 HDMRAVITTYEGKHNHDVPAARGSGYATNRA 433

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2

 Score =  103 bits (258), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 1/115 (0%)

Query: 155 KVQKLSSAKGI-DQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYY 213
           K Q LS  + + D  N+A +    V       +  + DG QWRKYGQK+ + NP PRAY+
Sbjct: 140 KNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYF 199

Query: 214 RCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTTAAASMLL 268
           RC+ A  CPV+K+VQR AED ++L+ TYEG HNH  P A+   A++   ++++ L
Sbjct: 200 RCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEGDATSQGGSSTVTL 254

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
255554813	580	WRKY transcription factor, putative [Ric	0.897	0.693	0.771	1e-162
259121421	602	WRKY transcription factor 28 [(Populus t	0.904	0.672	0.737	1e-150
224118042	578	predicted protein [Populus trichocarpa]	0.852	0.660	0.732	1e-149
225444291	535	PREDICTED: WRKY transcription factor 6-l	0.895	0.749	0.665	1e-148
147779800	535	hypothetical protein VITISV_002247 [Viti	0.859	0.719	0.686	1e-148
209867508	556	WRKY transcription factor [Picrorhiza ku	0.870	0.701	0.634	1e-142
224115798	540	predicted protein [Populus trichocarpa]	0.890	0.738	0.740	1e-141
302144104	510	unnamed protein product [Vitis vinifera]	0.839	0.737	0.640	1e-138
356547095	614	PREDICTED: WRKY transcription factor 6 [	0.935	0.682	0.608	1e-138
147841888	620	hypothetical protein VITISV_024690 [Viti	0.881	0.637	0.633	1e-138

>gi|255554813|ref|XP_002518444.1| WRKY transcription factor, putative [Ricinus communis] gi|223542289|gb|EEF43831.1| WRKY transcription factor, putative [Ricinus communis]

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 327/424 (77%), Positives = 353/424 (83%), Gaps = 22/424 (5%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDD 60
           MN ENQRLRDML+QVTNNYNALQMH++ALMQQQQ+    PE+   HEVV+GK E KKH+ 
Sbjct: 158 MNNENQRLRDMLTQVTNNYNALQMHLVALMQQQQQQNHGPEATHEHEVVQGKSEEKKHE- 216

Query: 61  QVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFD 120
             +VPRQF+ LGPSAETD E+S+ SSD+ERT SGTP    E AS   V +NGK E+ +FD
Sbjct: 217 --VVPRQFLDLGPSAETD-EISHSSSDDERTRSGTPQTNTETAS---VKNNGKIEMSTFD 270

Query: 121 DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA-KGIDQSNEATMRKARVS 179
            + ++       +GK IGREESPESETQGW PN KVQKL+ A KGIDQ+ EATMRKARVS
Sbjct: 271 QENSSF-----RDGKGIGREESPESETQGWNPN-KVQKLNPASKGIDQNAEATMRKARVS 324

Query: 180 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 239
           VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED +ILIT
Sbjct: 325 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDTSILIT 384

Query: 240 TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS 299
           TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS
Sbjct: 385 TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS 444

Query: 300 ASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSK 359
           ASAPFPTVTLDLTHSPNPLQ+QR    FQV FPGQPQN ASVT  QLPQVFGQALYNQSK
Sbjct: 445 ASAPFPTVTLDLTHSPNPLQVQRPPTHFQVPFPGQPQNFASVTPQQLPQVFGQALYNQSK 504

Query: 360 FSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAITSI 419
           FSGLQLSQ +  + Q      L P   Q   L D+VSAATAAITADPNFTAALAAAITSI
Sbjct: 505 FSGLQLSQELPQSQQ------LHP--SQQHSLVDSVSAATAAITADPNFTAALAAAITSI 556

Query: 420 IGGA 423
           IGG 
Sbjct: 557 IGGG 560

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121421|gb|ACV92030.1| WRKY transcription factor 28 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 318/431 (73%), Positives = 348/431 (80%), Gaps = 26/431 (6%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKD-EGKKHD 59
           MN ENQRL+DMLSQVTNNY+ALQMH +AL+QQQQ N    ES++  E V+ K  E KKH+
Sbjct: 163 MNAENQRLKDMLSQVTNNYSALQMHFVALIQQQQRNPGV-ESDKKQETVDAKSSEEKKHE 221

Query: 60  DQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSF 119
              MVPRQF+ LGPSAETD E+SN SS EERT S TP N  E AS ++   NGK E+V  
Sbjct: 222 ---MVPRQFMDLGPSAETD-EISNSSS-EERTRSVTPQNHFEVASTKN---NGKLEMVPH 273

Query: 120 DDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATMRK 175
           D + ++        GKR G +ESPESE+QGW PN KVQKL+ A    K I+QS EATMRK
Sbjct: 274 DQENSSFRG-----GKRFGGDESPESESQGWNPN-KVQKLNPATPANKAIEQSAEATMRK 327

Query: 176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 235
           ARVSVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED+T
Sbjct: 328 ARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKT 387

Query: 236 ILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILP-CSSS 294
           ILITTYEGNHNHPLPPAAM MASTTTAAA+MLLSGSMSSADG+MNPNLLARAILP CSSS
Sbjct: 388 ILITTYEGNHNHPLPPAAMTMASTTTAAATMLLSGSMSSADGMMNPNLLARAILPGCSSS 447

Query: 295 MATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQAL 354
           MATISASAPFPTVTLDLT + NPLQ Q+   QFQV FPGQPQN A VT  QLPQVFGQAL
Sbjct: 448 MATISASAPFPTVTLDLTQNTNPLQFQKPPTQFQVPFPGQPQNFALVTAPQLPQVFGQAL 507

Query: 355 YNQSKFSGLQLSQNIGSNSQSGSHQTLPPPL---QQPQQLADTVSAATAAITADPNFTAA 411
           YNQS+FSGLQLSQ+IGS SQ G HQ  P      QQP    DT+SAATAAITADPNFTAA
Sbjct: 508 YNQSEFSGLQLSQDIGS-SQLG-HQAQPQIFHSGQQPSLSHDTLSAATAAITADPNFTAA 565

Query: 412 LAAAITSIIGG 422
           LAAAI+SIIGG
Sbjct: 566 LAAAISSIIGG 576

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118042|ref|XP_002331543.1| predicted protein [Populus trichocarpa] gi|222873767|gb|EEF10898.1| predicted protein [Populus trichocarpa]

 Score =  533 bits (1374), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 315/430 (73%), Positives = 336/430 (78%), Gaps = 48/430 (11%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDD 60
           MN ENQRL+DMLSQVTNNY+ALQMH +AL+QQQQ N      N        K E KKH+ 
Sbjct: 162 MNAENQRLKDMLSQVTNNYSALQMHFVALIQQQQRNHGVESDN--------KQEEKKHE- 212

Query: 61  QVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFD 120
             MVPRQF+ LGPSAETD E+SN SS EERT S TP N  EAAS                
Sbjct: 213 --MVPRQFMDLGPSAETD-EISNSSS-EERTRSVTPQNHFEAAS---------------- 252

Query: 121 DQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATMRKA 176
                    +N++GKRIG +ESPESE QGW PN KVQKL+ A    K I+QS EATMRKA
Sbjct: 253 --------TKNNDGKRIGGDESPESELQGWNPN-KVQKLNPASSANKAIEQSAEATMRKA 303

Query: 177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTI 236
           RVSVRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED+TI
Sbjct: 304 RVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTI 363

Query: 237 LITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILP-CSSSM 295
           LITTYEGNHNHPLPPAAM MASTTTAAA+MLLSGSMSSADG+MNPNLLARAILP CSSSM
Sbjct: 364 LITTYEGNHNHPLPPAAMTMASTTTAAATMLLSGSMSSADGMMNPNLLARAILPGCSSSM 423

Query: 296 ATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALY 355
           ATISASAPFPTVTLDLT + NPLQ QR   QFQV FPGQPQN A VT  QLPQVFGQALY
Sbjct: 424 ATISASAPFPTVTLDLTQNTNPLQFQRPPTQFQVPFPGQPQNFALVTAPQLPQVFGQALY 483

Query: 356 NQSKFSGLQLSQNIGSNSQSGSHQTLPP---PLQQPQQLADTVSAATAAITADPNFTAAL 412
           NQSKFSGLQLSQ+IGS SQ G HQ  P    P QQP    DT+SAATAAITADPNFTAAL
Sbjct: 484 NQSKFSGLQLSQDIGS-SQLG-HQAQPQIFHPGQQPSLSHDTLSAATAAITADPNFTAAL 541

Query: 413 AAAITSIIGG 422
           AAAI+SIIGG
Sbjct: 542 AAAISSIIGG 551

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444291|ref|XP_002263115.1| PREDICTED: WRKY transcription factor 6-like [Vitis vinifera]

 Score =  531 bits (1368), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 300/451 (66%), Positives = 330/451 (73%), Gaps = 50/451 (11%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHD- 59
           MN ENQ+LR ML+QVTNNY+ LQMH++ LMQQQ +  R  ES Q H  V GK + KKH+ 
Sbjct: 116 MNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEV 175

Query: 60  DQVMVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKEHVNSNGKNEIV 117
              +VPRQFI LGP+A  D +  + SS EERT  LSG+P N  E                
Sbjct: 176 AGAVVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQE---------------- 219

Query: 118 SFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKAR 177
                          NGK  GREESPESETQGW   NK  KLS  K IDQS EATMRKAR
Sbjct: 220 ---------------NGKGAGREESPESETQGWV-QNKASKLSPPKTIDQSAEATMRKAR 263

Query: 178 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTIL 237
           VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR+IL
Sbjct: 264 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSIL 323

Query: 238 ITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMAT 297
           ITTYEG HNHPLPPAAMAMASTT+AAA+MLLSGSMSSADG+MNPN LAR ILPCSS+MAT
Sbjct: 324 ITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMAT 383

Query: 298 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 357
           ISASAPFPTVTLDLTH+P+PLQ QR  +QF V F    Q+  S   + LPQVF QALYNQ
Sbjct: 384 ISASAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQ 443

Query: 358 SKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQ--QLADTVSAATAAITADPNFTAALAAA 415
           SKFSGLQLSQ++ S     +HQ  PP L QPQ   LADTVSAATAAITADPNFTAALAAA
Sbjct: 444 SKFSGLQLSQDMES-----AHQA-PPTLHQPQPASLADTVSAATAAITADPNFTAALAAA 497

Query: 416 ITSIIGGAQ-------NPFSNNSNNNNRSCI 439
           ITSIIGG         N  SN +N++N + I
Sbjct: 498 ITSIIGGGAAHPNTTINSTSNATNSSNTNKI 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779800|emb|CAN70362.1| hypothetical protein VITISV_002247 [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 294/428 (68%), Positives = 320/428 (74%), Gaps = 43/428 (10%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHD- 59
           MN ENQ+LR ML+QVTNNY+ LQMH++ LMQQQ +  R  ES Q H  V GK + KKH+ 
Sbjct: 116 MNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEV 175

Query: 60  DQVMVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKEHVNSNGKNEIV 117
              +VPRQFI LGP+A  D +  + SS EERT  LSG+P N  E                
Sbjct: 176 AGAVVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQE---------------- 219

Query: 118 SFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKAR 177
                          NGK  GREESPESETQGW   NK  KLS  K IDQS EATMRKAR
Sbjct: 220 ---------------NGKGAGREESPESETQGWV-QNKASKLSPPKTIDQSAEATMRKAR 263

Query: 178 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTIL 237
           VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR+IL
Sbjct: 264 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSIL 323

Query: 238 ITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMAT 297
           ITTYEG HNHPLPPAAMAMASTT+AAA+MLLSGSMSSADG+MNPN LAR ILPCSS+MAT
Sbjct: 324 ITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMAT 383

Query: 298 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 357
           ISASAPFPTVTLDLTH+P+PLQ QR  +QF V F    Q+  S   + LPQVF QALYNQ
Sbjct: 384 ISASAPFPTVTLDLTHTPSPLQYQRPTSQFPVPFAAPAQSFPSAQTSSLPQVFSQALYNQ 443

Query: 358 SKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQ--QLADTVSAATAAITADPNFTAALAAA 415
           SKFSGLQLSQ++ S     +HQ  PP L QPQ   LADTVSAATAAITADPNFTAALAAA
Sbjct: 444 SKFSGLQLSQDMES-----AHQA-PPTLHQPQPASLADTVSAATAAITADPNFTAALAAA 497

Query: 416 ITSIIGGA 423
           ITSIIGG 
Sbjct: 498 ITSIIGGG 505

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209867508|gb|ACI90292.1| WRKY transcription factor [Picrorhiza kurrooa]

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/443 (63%), Positives = 315/443 (71%), Gaps = 53/443 (11%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDD 60
           MN ENQRL++ML+QVTNNY ALQMH++ LMQQQQE          HE++E K E KK ++
Sbjct: 142 MNAENQRLKEMLTQVTNNYTALQMHLVTLMQQQQE----------HEILERKPEEKKLEN 191

Query: 61  Q-VMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSF 119
              M+PRQF+ L PSA TD + +  SS EERTLSG+P N VE                  
Sbjct: 192 GGSMIPRQFMDLAPSAATDEQTN--SSSEERTLSGSPHNTVEV----------------- 232

Query: 120 DDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVS 179
                       S  KR GRE+SPESE   WGPN K  K+S  K +DQS EA+MRK RVS
Sbjct: 233 ------------SRNKRTGREDSPESE--AWGPN-KAPKMSPPKPVDQSAEASMRKVRVS 277

Query: 180 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 239
           VRARSEAPMI+DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR ILIT
Sbjct: 278 VRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRAILIT 337

Query: 240 TYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMATIS 299
           TYEG HNHPLPPAA+AMAS T+AAASMLLSGSM SADG+MNPN LAR I PCSS+MATIS
Sbjct: 338 TYEGTHNHPLPPAAVAMASITSAAASMLLSGSMPSADGMMNPNFLARTIFPCSSNMATIS 397

Query: 300 ASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQSK 359
           ASAP PTVTLDLT +PNPLQ QR    FQV FPG   N   + N   PQVFGQALYNQSK
Sbjct: 398 ASAP-PTVTLDLTQNPNPLQFQRPPNPFQVPFPGSSHNFGPIPNANAPQVFGQALYNQSK 456

Query: 360 FSGLQLSQNIGSNSQSGSHQTLPPPLQQPQ-----QLADTVSAATAAITADPNFTAALAA 414
           FSGLQ+SQ+I   +Q     +  P + Q Q       ADT+SAATAAITADPNF AALAA
Sbjct: 457 FSGLQMSQDIDEAAQLLRQSSQQPQVHQAQAQAHPSFADTLSAATAAITADPNFMAALAA 516

Query: 415 AITSIIGGAQNP--FSNNSNNNN 435
           AI+SI GG   P   +NNS+ NN
Sbjct: 517 AISSIFGGGSQPSIANNNSSPNN 539

Source: Picrorhiza kurrooa

Species: Picrorhiza kurrooa

Genus: Picrorhiza

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115798|ref|XP_002317127.1| predicted protein [Populus trichocarpa] gi|222860192|gb|EEE97739.1| predicted protein [Populus trichocarpa]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 319/431 (74%), Positives = 346/431 (80%), Gaps = 32/431 (7%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKD-EGKKHD 59
           MNTENQRL+DML QVT +Y+ALQMH  ALMQQ Q+     ESN+  +   GK  E KKH+
Sbjct: 112 MNTENQRLKDMLGQVTTSYSALQMHFAALMQQHQQQNHGKESNKEQQ---GKSSEEKKHE 168

Query: 60  DQVMVPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSF 119
           D V+VPRQF+ LGPSAETD E+SN SSDE RT SGTP N +E AS +   +NGK   + +
Sbjct: 169 D-VVVPRQFMDLGPSAETD-ELSNSSSDE-RTRSGTPQNHIEVASPK---NNGK---LPY 219

Query: 120 DDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATMRK 175
           D + ++       +GKRIGREESPESE+Q W    KVQK   A    K I+QS EATMRK
Sbjct: 220 DQENSSF-----RDGKRIGREESPESESQAW----KVQKTDPASPANKAIEQSTEATMRK 270

Query: 176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 235
           ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT
Sbjct: 271 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 330

Query: 236 ILITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPC-SSS 294
           ILITTYEGNHNHPLPPAAMAMASTT AAASMLLSGSMSSADGIMNPNLLARAILP  SS+
Sbjct: 331 ILITTYEGNHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLARAILPAGSSN 390

Query: 295 MATISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQAL 354
           MATISASAPFPTVTLDLTH+PNPLQ QR   QFQV FPGQPQN +SVT  QLPQVFGQAL
Sbjct: 391 MATISASAPFPTVTLDLTHNPNPLQFQRPPPQFQVPFPGQPQNFSSVTTPQLPQVFGQAL 450

Query: 355 YNQSKFSGLQLSQNIGSNSQSGSHQTLPPPL---QQPQQLADTVSAATAAITADPNFTAA 411
           YNQSKFSGLQLSQ IG+  Q G HQ  P  L   QQP    DT+SAATAAITADPNFTAA
Sbjct: 451 YNQSKFSGLQLSQEIGT-PQLG-HQAQPHLLHSGQQPSLSQDTLSAATAAITADPNFTAA 508

Query: 412 LAAAITSIIGG 422
           LAAAI+SIIGG
Sbjct: 509 LAAAISSIIGG 519

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302144104|emb|CBI23209.3| unnamed protein product [Vitis vinifera]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 289/451 (64%), Positives = 317/451 (70%), Gaps = 75/451 (16%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHD- 59
           MN ENQ+LR ML+QVTNNY+ LQMH++ LMQQQ +  R  ES Q H  V GK + KKH+ 
Sbjct: 116 MNAENQKLRGMLNQVTNNYSTLQMHLVTLMQQQSQQNRGAESLQEHGSVGGKSDEKKHEV 175

Query: 60  DQVMVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKEHVNSNGKNEIV 117
              +VPRQFI LGP+A  D +  + SS EERT  LSG+P N  E                
Sbjct: 176 AGAVVPRQFIDLGPTATADTDEPSQSSSEERTRDLSGSPQNHQE---------------- 219

Query: 118 SFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKAR 177
                          NGK  GREESPESETQGW   NK  KLS  K IDQS EATMRKAR
Sbjct: 220 ---------------NGKGAGREESPESETQGW-VQNKASKLSPPKTIDQSAEATMRKAR 263

Query: 178 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTIL 237
           VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDR+IL
Sbjct: 264 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRSIL 323

Query: 238 ITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMAT 297
           ITTYEG HNHPLPPAAMAMASTT+AAA+MLLSGSMSSADG+MNPN LAR ILPCSS+MAT
Sbjct: 324 ITTYEGTHNHPLPPAAMAMASTTSAAANMLLSGSMSSADGLMNPNFLARTILPCSSNMAT 383

Query: 298 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYNQ 357
           ISASAPFPTVTLDLTH+P+PLQ QR  +                          QALYNQ
Sbjct: 384 ISASAPFPTVTLDLTHTPSPLQYQRPTSH-------------------------QALYNQ 418

Query: 358 SKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQ--QLADTVSAATAAITADPNFTAALAAA 415
           SKFSGLQLSQ++ S     +HQ  PP L QPQ   LADTVSAATAAITADPNFTAALAAA
Sbjct: 419 SKFSGLQLSQDMES-----AHQA-PPTLHQPQPASLADTVSAATAAITADPNFTAALAAA 472

Query: 416 ITSIIGGAQ-------NPFSNNSNNNNRSCI 439
           ITSIIGG         N  SN +N++N + I
Sbjct: 473 ITSIIGGGAAHPNTTINSTSNATNSSNTNKI 503

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547095|ref|XP_003541953.1| PREDICTED: WRKY transcription factor 6 [Glycine max]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 272/447 (60%), Positives = 320/447 (71%), Gaps = 28/447 (6%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKK--H 58
           M  EN RL++ML QV NNYNALQ H+++LM+ Q +  +  +  Q H+V +GK E K+  +
Sbjct: 180 MKVENHRLKNMLDQVNNNYNALQTHLVSLMKDQMD--KEDDKQQPHQVFDGKLEEKQAGN 237

Query: 59  DDQVMVPRQF--IGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEI 116
               +VPRQF  +GL  +A+T+    + SS   R+    P N  E ASK+  N    +E 
Sbjct: 238 GGGALVPRQFMDLGLATNADTNETSHSHSSSVIRSQDSPPTNNTEVASKK--NGGASDEG 295

Query: 117 VSFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKA 176
           + FD         +   G+ I RE+SP    QG   NN V K S  + +DQ+ EATMRKA
Sbjct: 296 LVFDQD-------KKEFGRGIEREDSPSD--QGVAANNNVPKFSPPRNVDQA-EATMRKA 345

Query: 177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTI 236
           RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDRTI
Sbjct: 346 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTI 405

Query: 237 LITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMA 296
           LITTYEGNHNHPLPPAAMAMA TT++AA MLLSGSMSSADG+MN + L R +LPCSSSMA
Sbjct: 406 LITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADGLMNASFLTRTLLPCSSSMA 465

Query: 297 TISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLASVTNTQLPQVFGQALYN 356
           TISASAPFPTVTLDLT SPNPLQ  +Q +QFQ+ FPG PQN A+   + LPQ+FGQALYN
Sbjct: 466 TISASAPFPTVTLDLTQSPNPLQFPKQPSQFQIPFPGVPQNFANSQASLLPQIFGQALYN 525

Query: 357 QSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALAAAI 416
           QSKFSGLQ+SQ+    SQ  +    PPP      LADTVS   AAI ADPNFTAALAAAI
Sbjct: 526 QSKFSGLQMSQD-SDPSQLSNQSQRPPP-----HLADTVS---AAIAADPNFTAALAAAI 576

Query: 417 TSIIGGAQNPFSNNSNNNNRSCIIFTN 443
           TSIIGGAQ P +N++ + N +    TN
Sbjct: 577 TSIIGGAQ-PNNNSTTSTNYNGTTSTN 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841888|emb|CAN65218.1| hypothetical protein VITISV_024690 [Vitis vinifera]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 273/431 (63%), Positives = 316/431 (73%), Gaps = 36/431 (8%)

Query: 1   MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDD 60
           M+ EN+RLR ML QVTNNYNALQ+H++ALMQ Q+      E+N+ H+    +     ++ 
Sbjct: 174 MHAENERLRSMLXQVTNNYNALQVHMVALMQDQKA-----ENNEEHD----QKHSGNNNG 224

Query: 61  QVMVPRQFIGLGPSAETDHEVSNCSSDEERT--LSGTPPNIVEAASKE-HVNSNGKNEIV 117
            V+VPRQFI LG +A+ + E  + SS E R+   SG+P N  E  SKE  +  N K E  
Sbjct: 225 GVVVPRQFIDLGLAAKAEVEEPSLSSSEGRSGDRSGSPINNGEVGSKELELRKNEKKEYS 284

Query: 118 SFDDQAAAAAAAENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKAR 177
           S                  IGREESP+  +Q WG N KV +L+ +K +DQ+ EATMRKAR
Sbjct: 285 S-----------------GIGREESPDQGSQ-WGAN-KVPRLNPSKNVDQT-EATMRKAR 324

Query: 178 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTIL 237
           VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+IL
Sbjct: 325 VSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRSIL 384

Query: 238 ITTYEGNHNHPLPPAAMAMASTTTAAASMLLSGSMSSADGIMNPNLLARAILPCSSSMAT 297
           ITTYEGNHNHPLPPAAMAMASTT++AA MLLSGSM SADG+MN N LAR +LPCSSSMAT
Sbjct: 385 ITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMPSADGLMNSNFLARTVLPCSSSMAT 444

Query: 298 ISASAPFPTVTLDLTHSPNPLQLQRQAAQFQVQFPGQPQNLA----SVTNTQLPQVFGQA 353
           ISASAPFPTVTLDLT +PNPLQ QR  +QF V  P   QNLA    +  ++ LPQ+F QA
Sbjct: 445 ISASAPFPTVTLDLTQNPNPLQFQRPPSQFXVPSPNPXQNLAGPAAATPSSLLPQIFNQA 504

Query: 354 LYNQSKFSGLQLSQNIGSNSQSGSHQTLPPPLQQPQQLADTVSAATAAITADPNFTAALA 413
           LYNQSKFSGLQ+SQ++ +      HQ       Q   LA+TVSAATAAITADPNFTAALA
Sbjct: 505 LYNQSKFSGLQMSQDMEAAQLPTHHQPSSQQQSQQNSLAETVSAATAAITADPNFTAALA 564

Query: 414 AAITSIIGGAQ 424
           AAITSIIGGAQ
Sbjct: 565 AAITSIIGGAQ 575

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	448
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.573	0.464	0.560	1.5e-89
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.808	0.672	0.509	5.3e-88
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.754	0.640	0.483	8.5e-77
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.363	0.333	0.523	5.8e-51
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.665	0.620	0.341	1.5e-41
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.656	0.536	0.332	8.9e-38
TAIR|locus:2196779	387	WRKY36 "WRKY DNA-binding prote	0.520	0.602	0.338	1e-34
TAIR|locus:2199317	374	WRKY9 "WRKY DNA-binding protei	0.25	0.299	0.610	1.3e-34
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.258	0.374	0.410	2.5e-28
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.234	0.301	0.447	2.1e-26

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
 Identities = 162/289 (56%), Positives = 178/289 (61%)

Query:   132 SNGKRIGREESPESETQGWGPNNKVQKLSSAKG--IDQSNEATMRKARVSVRARSEAPMI 189
             SNGKR+GREESPE+E+      NK+QK++S      DQ+ EATMRKARVSVRARSEAPMI
Sbjct:   258 SNGKRLGREESPETES------NKIQKVNSTTPTTFDQTAEATMRKARVSVRARSEAPMI 311

Query:   190 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXX 249
             +DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQVQRCAEDR+ILITTYEGNHNH  
Sbjct:   312 SDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQVQRCAEDRSILITTYEGNHNHPL 371

Query:   250 XXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILPCSSSMATISASAPFPTVT 308
                                       DG+MNP NLLARA+LPCS+SMATISASAPFPTVT
Sbjct:   372 PPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVT 431

Query:   309 LDLTHSP------NPXXXXXXXXXXXXXXPGQPQNLASVTNT---QLPQVFGQALYNQSK 359
             LDLTHSP      NP                  Q    +TN     LP V GQALYNQSK
Sbjct:   432 LDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSK 491

Query:   360 FSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATAAITADPNF 408
             FSG                             ADT++A    +TADPNF
Sbjct:   492 FSGLQFSGGS----------PSTAAFSQSHAVADTITA----LTADPNF 526

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 879 (314.5 bits), Expect = 5.3e-88, P = 5.3e-88
 Identities = 218/428 (50%), Positives = 257/428 (60%)

Query:     1 MNTENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVV-EGKDEGKKHD 59
             M  ENQRLRDMLSQ T N+NALQM ++A+M+QQ++      S+Q H +  E K EG+K  
Sbjct:   121 MKIENQRLRDMLSQATTNFNALQMQLVAVMRQQEQRN----SSQDHLLAQESKAEGRKRQ 176

Query:    60 D-QVMVPRQFIGLGPSAETDHEVSNCSSDEERTL-SGTPPNIVEAASKEHVNSNGKNEIV 117
             + Q+MVPRQF+ LGPS+      +  SS+E  T+ SG+PP+++E+       SN +    
Sbjct:   177 ELQIMVPRQFMDLGPSSGAAEHGAEVSSEERTTVRSGSPPSLLES-------SNPRE--- 226

Query:   118 SFDDQXXXXXXXENSNGKRI-GREESPE-SETQGWGPNNKVQK----LSSAKG------I 165
                            NGKR+ GREES E SE+  WG  NKV K     S++ G      I
Sbjct:   227 ---------------NGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVI 271

Query:   166 DQSN-EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVR 224
             DQS  EATMRKARVSVRARSEA MI+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVR
Sbjct:   272 DQSAAEATMRKARVSVRARSEAAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVR 331

Query:   225 KQVQRCAEDRTILITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NL 283
             KQVQRCAEDR+ILITTYEGNHNH                            DG+MNP NL
Sbjct:   332 KQVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNL 391

Query:   284 LARAILPCSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTN 343
             LARAILPCSSSMATISASAPFPT+TLDLT+SPN                 +P    +V  
Sbjct:   392 LARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPAV-- 449

Query:   344 TQLPQVFGQALYN---QSKFSGXXXXXXXXXXXXXXXHQTXXXXXXXXXXXADTVSAATA 400
               LPQV GQA+YN   QSKFSG                             A++VSAA+A
Sbjct:   450 --LPQVVGQAMYNNQQQSKFSGLQL-------------PAQPLQIAATSSVAESVSAASA 494

Query:   401 AITADPNF 408
             AI +DPNF
Sbjct:   495 AIASDPNF 502

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 735 (263.8 bits), Expect = 8.5e-77, Sum P(2) = 8.5e-77
 Identities = 181/374 (48%), Positives = 216/374 (57%)

Query:     4 ENQRLRDMLSQVT-NNYNALQM------HIIALMQQQQENRRAPESNQAHEVVEGKDEGK 56
             EN +LR+ L + + +N    QM      +  +L  Q     R  E +      E  D  K
Sbjct:   112 ENAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQEDHHHLATTENNDNVK 171

Query:    57 -KHDDQVMVPRQFIGLGPSAETDHEVSNCSSDEERTL--SGTPPNIVEAASKEHVNSNGK 113
              +H+   MVPRQFI LGP ++   EVS+    EERT   SG+PP+++E +S      NGK
Sbjct:   172 NRHEVPEMVPRQFIDLGPHSD---EVSS----EERTTVRSGSPPSLLEKSSSRQ---NGK 221

Query:   114 NEIVSFDDQXXXXXXXENSNGKRIGREESPESETQGWGPNNKVQKLSSAKGIDQSN-EAT 172
               +V  +          N N  ++ +  +  S   G G  N     +S+K I+Q+  EAT
Sbjct:   222 RVLVREESPETESNGWRNPN--KVPKHHASSSICGGNGSEN-----ASSKVIEQAAAEAT 274

Query:   173 MRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE 232
             MRKARVSVRARSEAPM++DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE
Sbjct:   275 MRKARVSVRARSEAPMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAE 334

Query:   233 DRTILITTYEGNHNHXXX-XXXXXXXXXXXXXXXXXXXXXXXXXDGIMNP-NLLARAILP 290
             DRTILITTYEGNHNH                             DG+MNP NLLAR ILP
Sbjct:   335 DRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILP 394

Query:   291 CSSSMATISASAPFPTVTLDLTHSPNPXXXXXXXXXXXXXXPGQPQNLASVTNTQLPQVF 350
             CSSSMATISASAPFPT+TLDLT SPN                G    L  +  + LP + 
Sbjct:   395 CSSSMATISASAPFPTITLDLTESPNGNNPTNNPLMQFSQRSG----LVELNQSVLPHMM 450

Query:   351 GQALY--NQSKFSG 362
             GQALY   QSKFSG
Sbjct:   451 GQALYYNQQSKFSG 464

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 5.8e-51, Sum P(3) = 5.8e-51
 Identities = 90/172 (52%), Positives = 108/172 (62%)

Query:   155 KVQKLSSAKGIDQSN---EATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRA 211
             ++ +  S    +Q N   +   RKARVSVRARS+A  + DGCQWRKYGQKMAKGNPCPRA
Sbjct:   201 RIDQNKSTNHEEQQNPHDQLPYRKARVSVRARSDATTVNDGCQWRKYGQKMAKGNPCPRA 260

Query:   212 YYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHXX--XXXXXXXXXXXXXXXXXXXX 269
             YYRCTMAVGCPVRKQVQRCAED TIL TTYEGNHNH                        
Sbjct:   261 YYRCTMAVGCPVRKQVQRCAEDTTILTTTYEGNHNHPLPPSATAMAATTSAAAAMLLSGS 320

Query:   270 XXXXXXDGIMNPNLLARAIL----PCSSSMATISASAPFPTVTLDLTHSPNP 317
                     + +P+  + +      P +S++AT+SASAPFPT+TLDLT+ P P
Sbjct:   321 SSSNLHQTLSSPSATSSSSFYHNFPYTSTIATLSASAPFPTITLDLTNPPRP 372

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 1.5e-41, Sum P(2) = 1.5e-41
 Identities = 112/328 (34%), Positives = 162/328 (49%)

Query:     4 ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVM 63
             EN+RL+  LS++  +++ LQ     LM +  E  +    ++ H   +G+DE +   ++V 
Sbjct:     7 ENRRLKSSLSKIKKDFDILQTQYNQLMAKHNEPTKF--QSKGHHQDKGEDEDR---EKVN 61

Query:    64 VPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQX 123
                + + L      + EV + S+ EE+       ++ EA    + + N K+ I       
Sbjct:    62 EREELVSLSLGRRLNSEVPSGSNKEEKN-----KDVEEAEGDRNYDDNEKSSIQGLS-MG 115

Query:   124 XXXXXXENSNGKRIGREESPESETQGWGPNNKVQKLSSA----KGIDQSNEATM------ 173
                    N N K +  + + E+ +     NNK++  +S      G D  +E  +      
Sbjct:   116 IEYKALSNPNEK-LEIDHNQETMSLEISNNNKIRSQNSFGFKNDGDDHEDEDEILPQNLV 174

Query:   174 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 233
             +K RVSVR+R E P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A  CPVRKQVQRC+ED
Sbjct:   175 KKTRVSVRSRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQVQRCSED 234

Query:   234 RTILITTYEGNHNH----XXXXXXXXXXXXXXXXXXXXXXXXXXXXD--GIMNPNLLARA 287
              +ILI+TYEG HNH                                D  G+ N +L    
Sbjct:   235 MSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLHGL-NFSLSGNN 293

Query:   288 ILPCSSSMATIS-ASAPFPTVTLDLTHS 314
             I P   +    S +S+  PTVTLDLT S
Sbjct:   294 ITPKPKTHFLQSPSSSGHPTVTLDLTTS 321

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 106/319 (33%), Positives = 149/319 (46%)

Query:     4 ENQRLRDMLSQVTNNYNALQMHIIALMQQQQENRRAPESNQAHEVVEGKDEGKKHDDQVM 63
             EN++L+ ML ++ ++Y +L++    ++QQ+  N      N          +    D +  
Sbjct:    49 ENEKLKGMLERIESDYKSLKLRFFDIIQQEPSNTATKNQNMVDHPKPTTTDLSSFDQE-- 106

Query:    64 VPRQFIGLGPSAETDHEVSNCSSDEERTLSGTPPNIVEAASKEHVNSNGKNEIVSFDDQX 123
               R+ + L     +     +    EE+T         +A S E VN++ +          
Sbjct:   107 --RELVSLSLGRRSSSPSDSVPKKEEKT---------DAISAE-VNADEELTKAGLTLGI 154

Query:   124 XXXXXXENSNGKRIGREESPESETQGWGPNNKVQKLSS---AKGIDQSNEAT----MRKA 176
                   E   G  +    +  SE + W P     K SS   A G D   EA     +++A
Sbjct:   155 NNGNGGEPKEGLSMENRANSGSE-EAWAPGKVTGKRSSPAPASGGDADGEAGQQNHVKRA 213

Query:   177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTI 236
             RV VRAR + P + DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRKQVQRCA+D +I
Sbjct:   214 RVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCADDMSI 273

Query:   237 LITTYEGNHNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGIM-NPNLLARAILPCSS-S 294
             LITTYEG H+H                               M   NL   +    ++ S
Sbjct:   274 LITTYEGTHSHSLPLSATTMASTTSAAASMLLSGSSSSPAAEMIGNNLYDNSRFNNNNKS 333

Query:   295 MATISASAPF-PTVTLDLT 312
               + +  +P  PTVTLDLT
Sbjct:   334 FYSPTLHSPLHPTVTLDLT 352

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

TAIR|locus:2196779 WRKY36 "WRKY DNA-binding protein 36" [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
 Identities = 82/242 (33%), Positives = 115/242 (47%)

Query:    78 DHEVSNCSSDEERTLSGTPPNIVEAASKEHVN-SNGKNEIVSFDDQXXXXXXXENSNGKR 136
             D ++S      E+ +S    N V+  S ++V  S  K   + F  Q       +  +  R
Sbjct:    89 DVDISLRLGRSEQKISKKEENKVDKISTKNVEESKDKRSALGFGFQIQSYEASKLDDLCR 148

Query:   137 IGREESPESETQGWGPNNKVQKLSSAKGIDQSNEAT-MRKARVSVRARSEAPMITDGCQW 195
               +  + E++      + K  +  + + + + +E T ++K RV V+A  E P I DGCQW
Sbjct:   149 QVKLANAENKCVSSRKDVKSVRNENHQDVLEEHEQTGLKKTRVCVKASCEDPSINDGCQW 208

Query:   196 RKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT-ILITTYEGNHNHXXXXXXX 254
             RKYGQK AK NP PRAYYRC+M+  CPVRKQVQRC E+ T   +TTYEGNH+H       
Sbjct:   209 RKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLPMEAS 268

Query:   255 XXXXXXXXXXXXXXXXXXXXXDGIMNPNLLARAILPCSSSMATISASAPFPTVTLDLTHS 314
                                      + +L      P      +IS +   PTVTLDLT  
Sbjct:   269 HMAAGTSAAASLLQSGSSSSSSST-SASL--SYFFPFHHF--SISTTNSHPTVTLDLTR- 322

Query:   315 PN 316
             PN
Sbjct:   323 PN 324

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0015698 "inorganic anion transport" evidence=RCA

TAIR|locus:2199317 WRKY9 "WRKY DNA-binding protein 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 69/113 (61%), Positives = 78/113 (69%)

Query:   135 KRIGREESPESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQ 194
             K+  +EES E+        N      +   I  S++   RKARVSVRAR E   + DGCQ
Sbjct:   181 KKQKQEESKEAVQSHHQRYNSSSLDMNMPRIISSSQGN-RKARVSVRARCETATMNDGCQ 239

Query:   195 WRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 247
             WRKYGQK AKGNPCPRAYYRCT+A GCPVRKQVQRC ED +ILITTYEG HNH
Sbjct:   240 WRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQVQRCLEDMSILITTYEGTHNH 292

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 48/117 (41%), Positives = 66/117 (56%)

Query:   132 SNGKRIGREESPESETQGWGPNNKVQKLSSAKGI-DQSNEATMRKARVSVRARSEAPMIT 190
             S+GK      + +          K Q LS  + + D  N+A +    V       +  + 
Sbjct:   117 SSGKTENSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVK 176

Query:   191 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 247
             DG QWRKYGQK+ + NP PRAY+RC+ A  CPV+K+VQR AED ++L+ TYEG HNH
Sbjct:   177 DGFQWRKYGQKVTRDNPSPRAYFRCSFAPSCPVKKKVQRSAEDPSLLVATYEGTHNH 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 253 (94.1 bits), Expect = 2.1e-26, Sum P(2) = 2.1e-26
 Identities = 47/105 (44%), Positives = 62/105 (59%)

Query:   143 PESETQGWGPNNKVQKLSSAKGIDQSNEATMRKARVSVRARSEAPMITDGCQWRKYGQKM 202
             P +   G+    +       K I +  +  + K  V       + ++ DG QWRKYGQK+
Sbjct:   146 PGAAAAGYADQTECTSGEPCKRIREECKPKISKLYVHADPSDLSLVVKDGYQWRKYGQKV 205

Query:   203 AKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 247
              K NPCPRAY+RC+ A  CPV+K+VQR AED TIL+ TYEG HNH
Sbjct:   206 TKDNPCPRAYFRCSFAPACPVKKKVQRSAEDNTILVATYEGEHNH 250

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XEC3	WRK42_ARATH	No assigned EC number	0.5568	0.7924	0.6723	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	448
smart00774	59	smart00774, WRKY, DNA binding domain	4e-36
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	2e-35

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  126 bits (320), Expect = 4e-36
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 191 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH 247
           DG QWRKYGQK+ KG+P PR+YYRCT   GCP +KQVQR  +D +++  TYEG H H
Sbjct: 3   DGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  124 bits (314), Expect = 2e-35
 Identities = 37/59 (62%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 191 DGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPL 249
           DG  WRKYGQK  KG+P PR+YYRCT   GCPV+KQV+R ++D  I+  TYEG HNHP 
Sbjct: 3   DGYNWRKYGQKPVKGSPFPRSYYRCTSP-GCPVKKQVERSSDDPQIVEITYEGEHNHPK 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	448
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	93.76
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	92.19

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=2.4e-31  Score=208.40  Aligned_cols=59  Identities=66%  Similarity=1.288  Sum_probs=52.2

Q ss_pred             CCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCC
Q 013190          189 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHP  248 (448)
Q Consensus       189 ~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~  248 (448)
                      ++|||+|||||||.|+|+++||+||||++. +|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~-~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP-GCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT-TEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc-ChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            479999999999999999999999999995 99999999999999999999999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=6.1e-31  Score=206.16  Aligned_cols=59  Identities=59%  Similarity=1.203  Sum_probs=57.1

Q ss_pred             CCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCC
Q 013190          189 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNH  247 (448)
Q Consensus       189 ~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH  247 (448)
                      ++|||+|||||||.|+|+++||+||||++.++|+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999779999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=93.76  E-value=0.045  Score=44.44  Aligned_cols=32  Identities=41%  Similarity=0.692  Sum_probs=27.3

Q ss_pred             CCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190          219 VGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  251 (448)
Q Consensus       219 ~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~  251 (448)
                      .||+|+=.|-+.. |....++.+..+|||++-|
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~P   91 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPLCP   91 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCCCC
Confidence            5999999998776 7778888999999999754

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.19  E-value=0.062  Score=40.10  Aligned_cols=50  Identities=28%  Similarity=0.588  Sum_probs=26.0

Q ss_pred             CCCCcchhhcccccccCCCCCCccccccccc--CCcccccceeeecCCCcEEEEEecccCCC
Q 013190          188 MITDGCQWRKYGQKMAKGNPCPRAYYRCTMA--VGCPVRKQVQRCAEDRTILITTYEGNHNH  247 (448)
Q Consensus       188 ~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~--~gC~arKqVQr~~~D~~i~~tTY~G~HnH  247 (448)
                      ++-|||.-+++...      ..+.|+||+..  .+|+|+=.+.  .++..  ++...++|||
T Consensus        11 L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~~--~~~~~~~HnH   62 (62)
T PF04500_consen   11 LVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDGR--VVRTNGEHNH   62 (62)
T ss_dssp             EEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TTE--EEE-S---SS
T ss_pred             EEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCCE--EEECCCccCC
Confidence            35699988776655      34589999984  3799988776  33443  3344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	448
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		3e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		4e-17

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 53/72 (73%), Gaps = 1/72 (1%)
Query: 176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 235
           +R+ V  ++   ++ DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59
Query: 236 ILITTYEGNHNH 247
           +LITTYEG H+H
Sbjct: 60  LLITTYEGKHDH 71

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)
Query: 180 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 239
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 8   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 66
Query: 240 TYEGNHNH 247
           TYEG HNH
Sbjct: 67  TYEGKHNH 74
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	448
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	5e-48
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	5e-47

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  158 bits (400), Expect = 5e-48
 Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 1/77 (1%)

Query: 176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRT 235
           +R+ V  ++   ++ DG +WRKYGQK  KG+P PR+YYRC+ + GCPV+K V+R + D  
Sbjct: 1   SRIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCS-SPGCPVKKHVERSSHDTK 59

Query: 236 ILITTYEGNHNHPLPPA 252
           +LITTYEG H+H +PP 
Sbjct: 60  LLITTYEGKHDHDMPPG 76

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  155 bits (394), Expect = 5e-47
 Identities = 41/77 (53%), Positives = 51/77 (66%), Gaps = 1/77 (1%)

Query: 174 RKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAED 233
                 V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATD 60

Query: 234 RTILITTYEGNHNHPLP 250
              ++TTYEG HNH LP
Sbjct: 61  PKAVVTTYEGKHNHDLP 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	448
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=3.9e-35  Score=238.79  Aligned_cols=74  Identities=53%  Similarity=1.115  Sum_probs=71.7

Q ss_pred             eEEEEecCCCCCCCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190          177 RVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  251 (448)
Q Consensus       177 RV~v~t~se~~~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~  251 (448)
                      ||.|++.++.++++|||+|||||||.|||++|||+||||++ .||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSS-PGCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECS-TTCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCC-CCCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            89999999999999999999999999999999999999998 699999999999999999999999999999875

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=7.7e-35  Score=238.07  Aligned_cols=75  Identities=55%  Similarity=1.051  Sum_probs=68.9

Q ss_pred             ceEEEEecCCCCCCCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190          176 ARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  251 (448)
Q Consensus       176 ~RV~v~t~se~~~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~  251 (448)
                      -||+|+++++.++++|||+|||||||.|||++|||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         4 ~~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~-~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            4 GSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ----CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ceEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCc-CCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            478999999999999999999999999999999999999998 799999999999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	448
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	6e-35

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (307), Expect = 6e-35
 Identities = 41/71 (57%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 180 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILIT 239
           V+  SE  ++ DG +WRKYGQK+ KGNP PR+YY+CT   GC VRK V+R A D   ++T
Sbjct: 1   VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP-GCGVRKHVERAATDPKAVVT 59

Query: 240 TYEGNHNHPLP 250
           TYEG HNH LP
Sbjct: 60  TYEGKHNHDLP 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	448
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=9.8e-35  Score=231.80  Aligned_cols=71  Identities=58%  Similarity=1.111  Sum_probs=67.2

Q ss_pred             EEecCCCCCCCCcchhhcccccccCCCCCCcccccccccCCcccccceeeecCCCcEEEEEecccCCCCCCc
Q 013190          180 VRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILITTYEGNHNHPLPP  251 (448)
Q Consensus       180 v~t~se~~~~~DGy~WRKYGQK~IKGnp~PRsYYRCt~~~gC~arKqVQr~~~D~~i~~tTY~G~HnH~~p~  251 (448)
                      |++.++.++++|||+|||||||.|||+++||+||||++ .+|+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 v~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~-~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           1 VQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTT-PGCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEEC-SSCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             CccccccccCCCCcEecccCceeccCCCCceEEEEccc-cCCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            46778889999999999999999999999999999998 699999999999999999999999999999773