Citrus Sinensis ID: 013219
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | 2.2.26 [Sep-21-2011] | |||||||
| Q940M4 | 500 | Organic cation/carnitine | yes | no | 0.995 | 0.89 | 0.475 | 1e-120 | |
| P30638 | 520 | Putative transporter ZK63 | yes | no | 0.921 | 0.792 | 0.298 | 7e-58 | |
| Q2XWK0 | 548 | Synaptic vesicle 2-relate | N/A | no | 0.901 | 0.735 | 0.311 | 4e-56 | |
| Q8N4V2 | 548 | Synaptic vesicle 2-relate | yes | no | 0.903 | 0.737 | 0.302 | 1e-55 | |
| Q5R5T8 | 548 | Synaptic vesicle 2-relate | yes | no | 0.908 | 0.740 | 0.301 | 1e-55 | |
| Q1JP63 | 548 | Synaptic vesicle 2-relate | yes | no | 0.908 | 0.740 | 0.301 | 2e-55 | |
| Q1LVS8 | 506 | Putative transporter SVOP | no | no | 0.910 | 0.804 | 0.307 | 6e-53 | |
| Q9Z2I7 | 548 | Synaptic vesicle 2-relate | yes | no | 0.908 | 0.740 | 0.303 | 7e-52 | |
| Q8BFT9 | 548 | Synaptic vesicle 2-relate | yes | no | 0.908 | 0.740 | 0.298 | 2e-51 | |
| Q8N434 | 492 | Putative transporter SVOP | no | no | 0.906 | 0.823 | 0.301 | 5e-51 |
| >sp|Q940M4|OCT7_ARATH Organic cation/carnitine transporter 7 OS=Arabidopsis thaliana GN=OCT7 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 431 bits (1109), Expect = e-120, Method: Compositional matrix adjust.
Identities = 236/496 (47%), Positives = 316/496 (63%), Gaps = 51/496 (10%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
MA+ +TVDEAL +GFGK+Q +VLAYAG+GWVAEAME+M+LSFVGP V+S WNLS+
Sbjct: 1 MADGNTRFTVDEALVAMGFGKFQIYVLAYAGMGWVAEAMEMMLLSFVGPAVQSLWNLSAR 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRSGHVFL------------------------- 95
+ESLIT+ VFAG+++GAY+WG+V+D +GR +
Sbjct: 61 QESLITSVVFAGMLIGAYSWGIVSDKHGRRKGFIITAVVTFVAGFLSAFSPNYMWLIILR 120
Query: 96 --------------SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
SW+LEF+P +RG WMV+FS+FWT+G++ EA AW++MPRL WRWL
Sbjct: 121 CLVGLGLGGGPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNG-KLVARRS 200
L SS+PS +LL F + ESPRYL L+GR AEA LEKIA++NKT+LP G +
Sbjct: 181 LAFSSVPSSLLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELET 240
Query: 201 TLPTGERAPPELVHLLSSNGGNKT---------TEGKSGLSLFLMLFSSKLARTTILLWL 251
L + P E HLL + + + + G SL L L S L + T+LLW+
Sbjct: 241 ELEENKNIPTENTHLLKAGESGEAVAVSKIVLKADKEPGFSL-LALLSPTLMKRTLLLWV 299
Query: 252 LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 311
+ FGN+FAYY VVLL +EL++ RC + D N Y D FI S AE PGLL++A
Sbjct: 300 VFFGNAFAYYGVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISA 358
Query: 312 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371
+VD GRK S+ M C+FLLPL+++QS +TT LLFG R+C+ AFTV IYA EI
Sbjct: 359 AMVDRLGRKASMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEI 418
Query: 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431
YPT+VR+TG G +++GRIGG++CPLVAV LV CHQ AV+L VVI+ S + V L PF
Sbjct: 419 YPTAVRTTGVGVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPF 478
Query: 432 ETKGQELSDTVDFTSD 447
ET G++L+D++ + +
Sbjct: 479 ETSGRDLTDSISASKE 494
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High affinity carnitine transporter involved in the active cellular uptake of carnitine. Also transports organic cations. Arabidopsis thaliana (taxid: 3702) |
| >sp|P30638|YOU1_CAEEL Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 237/485 (48%), Gaps = 73/485 (15%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
+ +TVDEA+ +GFG++Q + G+ W+A+AME+M+LS + P + EW +SS ++
Sbjct: 62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQ 121
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGR--------------------SGHVFLSWFL--- 99
+L+TT VF+G+++ + WG + D +GR S H ++ F
Sbjct: 122 ALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFSTLVACIMGVISGMSPHFYVLLFFRGL 181
Query: 100 ----------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 143
EF+P + R +V+ SFW IG+V EA+ A+ +M WR L+
Sbjct: 182 TGFGIGGVPQSVTLYAEFLPTAQRAKCVVLIESFWAIGAVFEALLAYFVMESFGWRALMF 241
Query: 144 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 203
LSS+P I + PES R+ G A L+ A++N+ +LP G+LV S+
Sbjct: 242 LSSLPLGIFAVASFWLPESARFDMASGHPERALETLQAAARMNRVQLPTGRLV---SSTK 298
Query: 204 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 263
G + ++ +LLS + L +TTILLW + +F+YY +
Sbjct: 299 AGSESRGDIANLLSPD----------------------LRKTTILLWCIWAITAFSYYGM 336
Query: 264 VLLISELSSLDTRCRSPLMFSH-------HPQDANLYIDEFITSLAEIPGLLLAAILVDT 316
VL + L C L FS+ P + Y D T+LAE PGL++ ++++
Sbjct: 337 VLFTTVLFQSHDECHGGL-FSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEW 395
Query: 317 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRK ++ + + + +F L T L+F AR + GAF + +Y E+YPT++
Sbjct: 396 FGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTL 455
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+ G G +AM RIG +V P +A + + I+ I S+ L P ETKG+
Sbjct: 456 RAVGLGTCSAMARIGAIVTPFIAQVASEKSLSLPIGIYGTAAILGLIASLSL-PIETKGR 514
Query: 437 ELSDT 441
++ D+
Sbjct: 515 QMMDS 519
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q2XWK0|SVOP_XENLA Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 151/484 (31%), Positives = 233/484 (48%), Gaps = 81/484 (16%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+T+
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 SVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL---------- 99
VF G++ + WG V+D YGR + +S W L
Sbjct: 128 VVFIGMMASSSLWGNVSDQYGRRTGLKISVIWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 100 -----------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148
EF+P +R +++ FW +G+V E + A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKSRAKCILLIEIFWALGTVFEVLLAIFVMPTLGWRWLLILSALP 247
Query: 149 SFILLAFLGFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 207
+L A L F PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 -LMLFAILCFWLPESARYEVLSGNQEKALATLKRIATENGAPMPLGKLIVSR-------- 298
Query: 208 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 267
+ GK LFS + TT+LLW + F N+F+YY +VLL
Sbjct: 299 ---------------QEDRGK-----IRDLFSPQFRCTTLLLWFIWFSNAFSYYGLVLLT 338
Query: 268 SELSSLDTRC---------RSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 318
+EL C + + Y D T+L+E PGLL+ ++D G
Sbjct: 339 TELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVG 398
Query: 319 RKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377
RK ++ I F + S LL + N+LT LF AR + G F + +Y E+YPT+ R
Sbjct: 399 RKKTMAICFIIFSFSALLLFLCVGRNVLTV-FLFIARAFISGGFQAAYVYTPEVYPTATR 457
Query: 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437
+ G G + M R+G ++ P +A ++ + +T +V ++ ++ S L P ETKG+
Sbjct: 458 ALGLGTCSGMARVGALITPFIAQVMLESSIYLTVLVYSGCCVLAAVASCFL-PIETKGRG 516
Query: 438 LSDT 441
L ++
Sbjct: 517 LQES 520
|
Xenopus laevis (taxid: 8355) |
| >sp|Q8N4V2|SVOP_HUMAN Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/483 (30%), Positives = 230/483 (47%), Gaps = 79/483 (16%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+T+
Sbjct: 68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTS 127
Query: 68 SVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL---------- 99
VF G++ + WG ++D YGR + +S W L
Sbjct: 128 VVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGI 187
Query: 100 -----------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148
EF+P R +++ FW IG+V E + A +MP L WRWLL LS++P
Sbjct: 188 GGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVP 247
Query: 149 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 208
+ + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 248 LLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR--------- 298
Query: 209 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 268
+ GK LF+ TT+LLW + F N+F+YY +VLL +
Sbjct: 299 --------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTT 339
Query: 269 EL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR 319
EL SS + + Y+D T+L+E PG+L+ ++D GR
Sbjct: 340 ELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGR 399
Query: 320 KLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 378
K ++ + F + S LL + N+LT LLF AR + G F + +Y E+YPT+ R+
Sbjct: 400 KKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTATRA 458
Query: 379 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438
G G + M R+G ++ P +A ++ + +T V ++ ++ S L P ETKG+ L
Sbjct: 459 LGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGRGL 517
Query: 439 SDT 441
++
Sbjct: 518 QES 520
|
Homo sapiens (taxid: 9606) |
| >sp|Q5R5T8|SVOP_PONAB Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 217 bits (553), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 230/485 (47%), Gaps = 79/485 (16%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL-------- 99
T+ VF G++ + WG ++D YGR + +S W L
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 100 -------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146
EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245
Query: 147 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 206
+P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 207 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 266
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 267 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397
Query: 318 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y E+YPT+
Sbjct: 398 GRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515
Query: 437 ELSDT 441
L ++
Sbjct: 516 GLQES 520
|
Pongo abelii (taxid: 9601) |
| >sp|Q1JP63|SVOP_BOVIN Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 230/485 (47%), Gaps = 79/485 (16%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFGK+Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL-------- 99
T+ VF G++ + WG ++D YGR + +S W L
Sbjct: 126 TSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 100 -------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146
EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSA 245
Query: 147 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 206
+P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 VPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 207 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 266
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 267 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRL 397
Query: 318 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y E+YPT+
Sbjct: 398 GRKKTMALCFVVFSFCSLLLFICVGRNMLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515
Query: 437 ELSDT 441
L ++
Sbjct: 516 GLQES 520
|
Bos taurus (taxid: 9913) |
| >sp|Q1LVS8|SVOPL_DANRE Putative transporter SVOPL OS=Danio rerio GN=svopl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 150/488 (30%), Positives = 221/488 (45%), Gaps = 81/488 (16%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
++ YTV+EA+ +GFG + + G + EAMEIM+L+ V P ++ EW+L +
Sbjct: 44 KEPKCYTVEEAVESIGFGCFHILLFVIMGSANIVEAMEIMLLAVVSPEIRCEWHLEDWQV 103
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRSGHVF------------------LSWFL----- 99
+L++T VF G +V G +AD YGR VF WF+
Sbjct: 104 ALVSTMVFFGFMVCGVLCGYIADKYGRWKVVFGGFVWASYFSFLTSFSTSYGWFIFLRCM 163
Query: 100 ----------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 143
EF+P R + + S FW +GS+ + ++P + WRW++
Sbjct: 164 VGCGVAATSQGFVLKTEFIPAKYRAYLLPLASIFWMMGSILIIVLGMTVVPTMGWRWMIR 223
Query: 144 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 203
S IPS +L+ F PES R+ G A L++IA++N NG LP
Sbjct: 224 FSVIPSLVLIGLFMFIPESARFQVSAGNIQGAMSTLKRIAKMN-----NG-------VLP 271
Query: 204 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 263
GE PE+ + GN T L SS RT++LLW F SF+YY
Sbjct: 272 EGELREPEV-----TERGNAVT-----------LISSAFRRTSLLLWYSWFVASFSYYGS 315
Query: 264 VLLISELSSLDTRCRSPLMFSHH-------------PQDANLYIDEFITSLAEIPGLLLA 310
VL SEL + C + H P +++ Y I+ L E+ + L
Sbjct: 316 VLSSSELLEKNLLCVTDPDLEHQIKHIQEETLCYCIPFNSDDYQTLLISCLGEVALIPLN 375
Query: 311 AILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 370
IL++ GRK S+ I+ LS F + + + + T LLF R V F V IY AE
Sbjct: 376 IILLNIVGRKYSMVILLLLSAFFFMLVNICTTMLGFTILLFLLRSVVSMNFNVVYIYTAE 435
Query: 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 430
+YPTSVRS G G + RIGGM+ P +A L++ + I+ +I V +P
Sbjct: 436 VYPTSVRSIGMGFCTSFSRIGGMIAPFIAQVLMSKSVILALSPFATACIICAI-GVFFLP 494
Query: 431 FETKGQEL 438
ET+G+ L
Sbjct: 495 IETRGRAL 502
|
Danio rerio (taxid: 7955) |
| >sp|Q9Z2I7|SVOP_RAT Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 205 bits (521), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 229/485 (47%), Gaps = 79/485 (16%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFG++Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRSG----HVF--------------LSWFL-------- 99
T+ VF G++ + WG ++D YGR VF SW L
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVFWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 100 -------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146
EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245
Query: 147 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 206
P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 APLLVFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 207 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 266
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 267 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397
Query: 318 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y E+YPT+
Sbjct: 398 GRKKTMALCFVIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+ G G + M R+G ++ P +A ++ + +T V ++ ++ S L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFL-PIETKGR 515
Query: 437 ELSDT 441
L ++
Sbjct: 516 ALQES 520
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8BFT9|SVOP_MOUSE Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 228/485 (47%), Gaps = 79/485 (16%)
Query: 6 HVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI 65
+ V++A+ +GFG++Q + GL W+A+AME+MILS + P + EW L S + +L+
Sbjct: 66 DTFMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALL 125
Query: 66 TTSVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL-------- 99
T+ VF G++ + WG ++D YGR + +S W L
Sbjct: 126 TSVVFIGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGF 185
Query: 100 -------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146
EF+P R +++ FW IG+V E + A +MP L WRWLL LS+
Sbjct: 186 GIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVLLAVFVMPSLGWRWLLLLSA 245
Query: 147 IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 206
P + + PES RY L G +A L++IA N +P GKL+ R
Sbjct: 246 APLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISR------- 298
Query: 207 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 266
+ GK LF+ TT+LLW + F N+F+YY +VLL
Sbjct: 299 ----------------QEDRGK-----MRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLL 337
Query: 267 ISEL---------SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317
+EL SS + + Y+D T+L+E PG+L+ ++D
Sbjct: 338 TTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRL 397
Query: 318 GRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRK ++ + F + S LL + N+LT LLF AR + G F + +Y E+YPT+
Sbjct: 398 GRKKTMALCFIIFSLCSLLLFICIGRNVLTL-LLFIARAFISGGFQAAYVYTPEVYPTAT 456
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+ G G + M R+G ++ P +A ++ + +T V ++ + S L P ETKG+
Sbjct: 457 RALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAGVASCFL-PIETKGR 515
Query: 437 ELSDT 441
L ++
Sbjct: 516 ALQES 520
|
Mus musculus (taxid: 10090) |
| >sp|Q8N434|SVOPL_HUMAN Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 233/497 (46%), Gaps = 92/497 (18%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
++ +TV++A+ +GFG++ + G V EAMEIM+++ V P ++ EW L + +
Sbjct: 27 KEPKTFTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQV 86
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------WFL----- 99
+L+TT VF G +V + +GL+AD YGR + +S WF+
Sbjct: 87 ALVTTMVFFGYMVFSILFGLLADRYGRWKILLISFLWGAYFSLLTSFAPSYIWFVFLRTM 146
Query: 100 ----------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 143
EF+P RG + + FW GS+ A +I+P + WRWL+
Sbjct: 147 VGCGVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLLIIGLASVIIPTIGWRWLIR 206
Query: 144 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 203
++SIP IL+ F PES R+ G T A LE++A++N++ +P GKLV P
Sbjct: 207 VASIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVE-----P 261
Query: 204 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 263
E+ G+ F L +K RTT+ +W++ G SFAYY V
Sbjct: 262 VLEK------------------RGR-----FADLLDAKYLRTTLQIWVIWLGISFAYYGV 298
Query: 264 VLLISELSSLDTRC------------------RSPLMFSHH--PQDANLYIDEFITSLAE 303
+L +EL D C +SP + H P D Y I+++ E
Sbjct: 299 ILASAELLERDLVCGSKSDSAVVVTGGDSGESQSPC-YCHMFAPSD---YRTMIISTIGE 354
Query: 304 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV 363
I L + ++ GR+LS++I + LF L L S+ G LF R V F
Sbjct: 355 IALNPLNILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNT 414
Query: 364 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI 423
IY AE+YPT++R+ G G + ++ RIG MV P ++ L+ + + A+ L V V
Sbjct: 415 VYIYTAEVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLM-SASILGALCLFSSVCVVCA 473
Query: 424 LSVMLIPFETKGQELSD 440
+S +P ETKG+ L
Sbjct: 474 ISAFTLPIETKGRALQQ 490
|
Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| 383932368 | 482 | MFS [Gossypium hirsutum] | 0.973 | 0.902 | 0.575 | 1e-143 | |
| 224118680 | 492 | predicted protein [Populus trichocarpa] | 0.982 | 0.892 | 0.572 | 1e-141 | |
| 255574249 | 497 | sugar transporter, putative [Ricinus com | 0.977 | 0.879 | 0.560 | 1e-140 | |
| 224118546 | 493 | predicted protein [Populus trichocarpa] | 0.997 | 0.904 | 0.534 | 1e-137 | |
| 224095094 | 485 | predicted protein [Populus trichocarpa] | 0.973 | 0.896 | 0.514 | 1e-132 | |
| 255573803 | 498 | sugar transporter, putative [Ricinus com | 0.970 | 0.871 | 0.535 | 1e-131 | |
| 224095100 | 463 | predicted protein [Populus trichocarpa] | 0.948 | 0.915 | 0.493 | 1e-128 | |
| 357467655 | 499 | Synaptic vesicle 2-related protein [Medi | 0.970 | 0.869 | 0.506 | 1e-128 | |
| 225443470 | 495 | PREDICTED: synaptic vesicle 2-related pr | 0.986 | 0.890 | 0.522 | 1e-127 | |
| 224122710 | 503 | predicted protein [Populus trichocarpa] | 0.997 | 0.886 | 0.497 | 1e-127 |
| >gi|383932368|gb|AFH57281.1| MFS [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 273/474 (57%), Positives = 333/474 (70%), Gaps = 39/474 (8%)
Query: 7 VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLIT 66
+YT+DEAL VGFGK+Q FVL YAGLGW AEAMEIMILSF+G VKSEW LSS +ESL++
Sbjct: 8 LYTLDEALETVGFGKFQGFVLGYAGLGWFAEAMEIMILSFIGQAVKSEWQLSSGQESLLS 67
Query: 67 TSVFAGLVVGAYAWGLVADNYGR------------------------------------- 89
T VFAG+++GA WGL++DNYGR
Sbjct: 68 TVVFAGMLLGANTWGLLSDNYGRRKGFLTISMVTFGAGLLSTFSPNYLTLALLRGLVGFG 127
Query: 90 --SGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 147
VFLSWFLEF+P SNRGMWMV+FS+FWT GS+ EA AWI+MPRL+WRW+L S++
Sbjct: 128 LGGSSVFLSWFLEFIPASNRGMWMVVFSTFWTFGSIFEATLAWIVMPRLNWRWVLAFSAV 187
Query: 148 PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 207
PSF LL G PESPRYLC+KG T++A R LEKIA VN+TKLP G LV+ RS E
Sbjct: 188 PSFALLILYGVAPESPRYLCMKGNTSDALRILEKIASVNQTKLPPGVLVSGRSNDKDEES 247
Query: 208 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 267
AP E L + TT+ KSG S F MLFSSKL RTT+LLW+L FG+SF+YY ++LL
Sbjct: 248 APSENTAPLLPSLSKSTTQSKSGFSSFFMLFSSKLIRTTLLLWVLFFGDSFSYYGIILLT 307
Query: 268 SELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 327
S+LSS + C L + +PQD LY++ FITS+AE+PGLLL+AILVD GRK S+ IMF
Sbjct: 308 SKLSSGQSTCFPSLQSNINPQDDGLYLNAFITSMAELPGLLLSAILVDRVGRKHSMAIMF 367
Query: 328 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM 387
L+ +FL PL+ Q +LTT LLFGARM MG FTV+ IY+ E+YPTSVR+TGAG A+A+
Sbjct: 368 GLAFIFLTPLLIQQPAVLTTCLLFGARMNAMGTFTVASIYSPELYPTSVRTTGAGVASAI 427
Query: 388 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441
GRIGGMVCPLVAV LV CHQ AV L +V IV SI+ + L P++TKG+ELSDT
Sbjct: 428 GRIGGMVCPLVAVGLVNECHQTAAVALFLVAIVVSIVCIQLFPYDTKGRELSDT 481
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118680|ref|XP_002331421.1| predicted protein [Populus trichocarpa] gi|222873635|gb|EEF10766.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1310), Expect = e-141, Method: Compositional matrix adjust.
Identities = 274/479 (57%), Positives = 339/479 (70%), Gaps = 40/479 (8%)
Query: 3 EQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEE 62
E VYT+D+AL GFGK+Q VLAYAGLGW AEAMEI+ILSFVGP VKS+WNLSST+E
Sbjct: 4 EDQLVYTLDDALASAGFGKFQFLVLAYAGLGWFAEAMEILILSFVGPAVKSQWNLSSTQE 63
Query: 63 SLITTSVFAGLVVGAYAWGLVADNYGRSGH------------------------------ 92
SL++T VFAG++VGAY+WGL +D GR
Sbjct: 64 SLLSTVVFAGMLVGAYSWGLFSDYCGRRQGFLGITIITSAAGFLSTFSPNYVSLLILRCL 123
Query: 93 ---------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 143
VF SWFLEFVP S+RG WMV+FS+FWT G++ EA AWI++PRL+WRWLL
Sbjct: 124 VGVGLGGGPVFSSWFLEFVPASHRGTWMVVFSTFWTFGTIFEAALAWIVLPRLNWRWLLA 183
Query: 144 LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLP 203
SS+PS L F PESPRYL +KGR EAH LEKIAQ+N++KLP G LV+ +
Sbjct: 184 FSSLPSIAQLFFYWIVPESPRYLSMKGRITEAHNILEKIAQLNQSKLPPGMLVSDSTIGL 243
Query: 204 TGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 263
E AP + LLSS N ++ KSG S F+MLFSSKL RTT+LLWLL FGN+F+YY +
Sbjct: 244 DEESAPSKYTPLLSST-RNLVSDFKSGFSSFVMLFSSKLIRTTLLLWLLFFGNAFSYYGI 302
Query: 264 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 323
+LL SELSS + +C S ++ S + QD +LYI+ FITSLAE+PG+LL+AI+VD GRKLS+
Sbjct: 303 ILLTSELSSEEGKCASTVLRSENLQDDSLYINVFITSLAELPGILLSAIIVDRFGRKLSM 362
Query: 324 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383
MF L+C+FLLPLV +Q LTT LLFGARMC +G FTV+ IYA E+YPT +R+TGAG
Sbjct: 363 AFMFVLACIFLLPLVFHQHATLTTALLFGARMCAIGTFTVAAIYAPEVYPTVIRATGAGV 422
Query: 384 ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTV 442
ANA+GRIGGMVCPLVAV LVA CH A++L VVIV S++ V+L PFET G+ELSD++
Sbjct: 423 ANAVGRIGGMVCPLVAVGLVAGCHLKEAIILFEVVIVISVVCVLLFPFETSGRELSDSL 481
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574249|ref|XP_002528039.1| sugar transporter, putative [Ricinus communis] gi|223532569|gb|EEF34357.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 267/476 (56%), Positives = 338/476 (71%), Gaps = 39/476 (8%)
Query: 4 QGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEES 63
Q VY +DEAL VGFGK+Q FVL YAGLGW +EAME+MILSFVGP VK +W LSST+ES
Sbjct: 8 QNLVYNLDEALAAVGFGKFQGFVLVYAGLGWFSEAMEVMILSFVGPAVKLKWELSSTQES 67
Query: 64 LITTSVFAGLVVGAYAWGLVADNYGR-----------SG--------------------- 91
L++T VF G+++GA WGL++DNYGR SG
Sbjct: 68 LLSTVVFGGMLIGACTWGLISDNYGRRKCVLSITVITSGAGFISAFSPNYLTLVVLRCLV 127
Query: 92 -------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 144
HVFLSWFLEF+P S+RG WMVIFS+FWT+G + EA AWI+M RL+WRWLL L
Sbjct: 128 GFGLGGTHVFLSWFLEFIPTSHRGKWMVIFSTFWTLGIIFEASLAWIVMLRLNWRWLLAL 187
Query: 145 SSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 204
S++PSF LL F G PESPRYLCLKGRTA+AH+ LEKIA VN+ +LP G LV+
Sbjct: 188 STVPSFSLLLFYGLVPESPRYLCLKGRTAQAHQVLEKIALVNQKELPPGMLVSYGKIKED 247
Query: 205 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV 264
E + E L K + KSG S F +LFSS L +TT+LLW+L FGN F+YY ++
Sbjct: 248 EEISALEQKRSLLFMDREKISTLKSGFSSFSLLFSSNLIQTTLLLWVLFFGNVFSYYGII 307
Query: 265 LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 324
LL S+LSS +++C ++ S +PQD +L++D ITS AE+PG+LL+A++VD GRKLS+
Sbjct: 308 LLTSQLSSSESKCSLTILHSQNPQDESLFMDVLITSFAELPGILLSAMMVDRFGRKLSMA 367
Query: 325 IMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA 384
IMF + +FLLPLV+ QS+ILTTGLLFGARM +G FTV+ IYA E+YPTS+RSTGAG A
Sbjct: 368 IMFIFAWIFLLPLVSRQSDILTTGLLFGARMFSLGTFTVASIYAPELYPTSIRSTGAGTA 427
Query: 385 NAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 440
+A+GRIGGMVCPLVAVALV+NCH A++L VVI +++ ++L PFET G+ELSD
Sbjct: 428 SAVGRIGGMVCPLVAVALVSNCHFKAAIILFEVVIAITVVCILLFPFETSGRELSD 483
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224118546|ref|XP_002331389.1| predicted protein [Populus trichocarpa] gi|222873603|gb|EEF10734.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust.
Identities = 260/486 (53%), Positives = 335/486 (68%), Gaps = 40/486 (8%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M ++ YT+DEAL +GFGK+Q VLAYAGLGW AEAME+M+LSFVGPTVKS+W LSS
Sbjct: 1 MDDEAPAYTLDEALACLGFGKFQGLVLAYAGLGWFAEAMELMLLSFVGPTVKSQWGLSSG 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGR------------------------------- 89
+ESL++T VFAG++VGAY+WGLV+DN GR
Sbjct: 61 QESLLSTVVFAGMLVGAYSWGLVSDNCGRRQAIHFSLPYIFQSGLLSAFSPNYESLVIIR 120
Query: 90 --------SGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
V SWFLEFVP +RG WMV+FS+FWT+G++ EA AW++M RL WRWL
Sbjct: 121 CLVGLGLGGSTVLCSWFLEFVPAPHRGKWMVVFSTFWTLGAIFEASLAWLVMQRLSWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201
L SS+PS LL F G PESPRYLC+KGR +AH+ L+KIA +N+++LP G LV +
Sbjct: 181 LAFSSLPSIALLLFYGIVPESPRYLCMKGRINDAHKILQKIALLNQSELPPGMLVPDSTV 240
Query: 202 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 261
+ AP + LLSS + KS S F MLFSS L +TT+LLW+LLFGN F+YY
Sbjct: 241 GQEEKSAPSKYTPLLSST-RKVIVDFKSVFSSFFMLFSSTLIQTTLLLWVLLFGNVFSYY 299
Query: 262 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 321
++LL SELSS +C S ++ S + Q+ +LYI+ F+TSLAE+PGLLL+AI+VD GRKL
Sbjct: 300 GIILLTSELSSQQGKCGSTILSSENLQNDSLYINVFVTSLAELPGLLLSAIIVDRLGRKL 359
Query: 322 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 381
S+ +M L C+FL PL+ S LTT +LFGARMCVMG+FT++ +YA E+YPT+VR+TGA
Sbjct: 360 SMALMLVLGCIFLFPLLFNVSANLTTAMLFGARMCVMGSFTIATLYAPELYPTAVRATGA 419
Query: 382 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441
G A+++GRIGGM+CPLVAV LV C+ A++L VV+ S S +L PFETKGQELSD+
Sbjct: 420 GVASSVGRIGGMICPLVAVGLVTGCYLTEAIILFEVVMAISAFSSLLFPFETKGQELSDS 479
Query: 442 VDFTSD 447
VD SD
Sbjct: 480 VDHVSD 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095094|ref|XP_002310344.1| predicted protein [Populus trichocarpa] gi|222853247|gb|EEE90794.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 250/486 (51%), Positives = 321/486 (66%), Gaps = 51/486 (10%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M + G YTVD+A+ +GFGK+Q FVL YAG+GWV+EAME+MILSF+GP VKS+WNL+S
Sbjct: 1 MTDGGPRYTVDDAILAMGFGKFQYFVLLYAGMGWVSEAMEMMILSFIGPAVKSDWNLTSQ 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGR-----------SGHVFLS------------- 96
+ESLIT+ VFAG++VGAY+WG+V+D YGR SG FLS
Sbjct: 61 QESLITSVVFAGMLVGAYSWGVVSDRYGRRKGFLVTAIITSGAGFLSAFAPNYIALLVFR 120
Query: 97 ---------------WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
WFLEFVP NRGMWMVI S+FWT G++ EA AWIIMPRL+WRWL
Sbjct: 121 CLVGLGLGGGPVLFAWFLEFVPAPNRGMWMVIISAFWTFGAIFEASLAWIIMPRLNWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201
L +S++PSF LL F PESPRY CLKG+ +A R LEKIA+ N+ +LP G L
Sbjct: 181 LAVSALPSFFLLIFYVMTPESPRYFCLKGQKGDALRVLEKIAKQNRKELPLGALATDNEI 240
Query: 202 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 261
G+ P E G + G L L+L S KLAR+T+LLW++ FGN+F+YY
Sbjct: 241 ELQGKNIPIE---------GMDSDMGV--LKSLLLLISPKLARSTVLLWVVFFGNAFSYY 289
Query: 262 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 321
+VLL +EL++ + C S + Y + FITS AE PGL+++A++VD GRKL
Sbjct: 290 GLVLLTTELNNRNNTCNHTKAQSDKSSAVD-YKEVFITSFAEFPGLIVSALIVDRIGRKL 348
Query: 322 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 381
S+ +F ++C+FLLPLV +QS +TT LLFGAR+C+ G FT+ IYA EIYPTSVRSTG
Sbjct: 349 SMAALFFVACIFLLPLVVHQSPRITTILLFGARICITGTFTIVFIYAPEIYPTSVRSTGM 408
Query: 382 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441
G A+AMGRIGGM+CPLVAV+LV CHQ A+VL V V+ + VML P ETKG EL+++
Sbjct: 409 GVASAMGRIGGMICPLVAVSLVQGCHQTAALVLFVCVMFVAGCCVMLFPHETKGLELTES 468
Query: 442 VDFTSD 447
V T +
Sbjct: 469 VSSTKN 474
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255573803|ref|XP_002527821.1| sugar transporter, putative [Ricinus communis] gi|223532795|gb|EEF34573.1| sugar transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 254/474 (53%), Positives = 316/474 (66%), Gaps = 40/474 (8%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
YT+DEAL VGFGK+Q VL YAGLG AEAME+MILSFVGP VKSEW LSS++ESL+T+
Sbjct: 14 YTLDEALAAVGFGKFQGLVLVYAGLGSFAEAMEMMILSFVGPAVKSEWGLSSSQESLLTS 73
Query: 68 SVFAGLVVGAYAWGLVADNYGR-------------------------------------- 89
VFAG++ GAY+WGL++DNYGR
Sbjct: 74 VVFAGMLFGAYSWGLISDNYGRRKGILGSTLLTCGAGSLSTFCPNYISLITLRCLVGIGL 133
Query: 90 -SGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148
G VF SWFLEFVP S+RG WMV++S+ WT G++ EA AWI+MPRL WRWLL SS+P
Sbjct: 134 GGGPVFSSWFLEFVPASHRGTWMVVYSTSWTFGTIFEATLAWIVMPRLSWRWLLAFSSLP 193
Query: 149 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 208
S +LL F PESPRYLC KGR +AHR LEKIA +N+ KLP G LV+ +T E +
Sbjct: 194 SIVLLLFYRLAPESPRYLCTKGRFTDAHRILEKIALLNQAKLPGGILVSDSTTGLDEESS 253
Query: 209 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 268
LLS + + KS S F MLFSS+L +TT+LLW+L FGNSF YY ++LL S
Sbjct: 254 SLSHQPLLSL-ARKRVSSFKSAFSSFFMLFSSRLIKTTLLLWVLYFGNSFLYYGIILLTS 312
Query: 269 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT 328
ELS CRS + QD NLYID FITSLAE+PG++L+AI VD GRK S+ MF
Sbjct: 313 ELSGRQDECRSATSSLENHQDENLYIDIFITSLAELPGIILSAITVDRFGRKRSMIFMFV 372
Query: 329 LSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG 388
+C+FLLPLV++QS +L T LFGARMC +G FT++ IY E+YPT VR+TG+G A+A G
Sbjct: 373 AACIFLLPLVSHQSAVLRTSFLFGARMCAIGTFTIACIYCPELYPTPVRTTGSGVASAAG 432
Query: 389 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTV 442
RIGGM+CPLVAV LV CH +++ VV S + ++ P+ETKG ELSD+V
Sbjct: 433 RIGGMICPLVAVGLVTGCHVEAGIIVFEVVAAISAICLLFFPYETKGCELSDSV 486
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095100|ref|XP_002310345.1| predicted protein [Populus trichocarpa] gi|222853248|gb|EEE90795.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/486 (49%), Positives = 310/486 (63%), Gaps = 62/486 (12%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
MA+ G YTVDEAL VGFGK+Q VL YAG+GWV+EAME+MILSFVGP V S+W L+S
Sbjct: 1 MADGGPRYTVDEALVTVGFGKFQFLVLLYAGMGWVSEAMEVMILSFVGPAVHSKWGLTSH 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGR------------------------------- 89
EESLITT VFAG++VGAY WG+++D YGR
Sbjct: 61 EESLITTVVFAGMLVGAYTWGVISDKYGRRKGFFVTAIMTSVAGFLSAFAPNYIALLISR 120
Query: 90 --------SGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
G V L+WFLEFVP NRG WMV+FS+FWT+G++ E AWIIMPRL WRWL
Sbjct: 121 CLVGFGIGGGPVLLAWFLEFVPAPNRGTWMVVFSAFWTVGTIFEGGLAWIIMPRLGWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201
L LS++PSF+LL F PESPRYLCLKGR EA L+KIA++N +LP G +VA
Sbjct: 181 LALSALPSFLLLVFYTLTPESPRYLCLKGRKNEALIILKKIAKLNGKELPPGVVVA---- 236
Query: 202 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYY 261
G +G + L L++FS +L R+T+LLW+++F N+F+YY
Sbjct: 237 ------------------GNEIELQGNNHLPEMLIIFSPRLVRSTLLLWVVIFANAFSYY 278
Query: 262 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 321
+VLL +EL+ C S P + N Y FITS AE PGL+L+A+++D GRKL
Sbjct: 279 GLVLLTTELNDRSNTCHQTKKQSQKPANIN-YKQVFITSFAEFPGLILSALVIDRLGRKL 337
Query: 322 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 381
S+ MF + C+FLLPLV +QS +TT LLFGAR C+ G FT+ IYA E+YPT +R+TG
Sbjct: 338 SMAAMFFVCCIFLLPLVVHQSTGVTTTLLFGARTCITGTFTIVYIYAPELYPTFMRTTGV 397
Query: 382 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441
G A+++ RIGGMVCPLVAV+LV CHQ AVV ++ + + V+L PFETKG +L+D+
Sbjct: 398 GVASSVSRIGGMVCPLVAVSLVQGCHQTAAVVFFASIVFVAGICVLLFPFETKGLDLADS 457
Query: 442 VDFTSD 447
+ T
Sbjct: 458 LSGTKQ 463
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467655|ref|XP_003604112.1| Synaptic vesicle 2-related protein [Medicago truncatula] gi|355505167|gb|AES86309.1| Synaptic vesicle 2-related protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/480 (50%), Positives = 312/480 (65%), Gaps = 46/480 (9%)
Query: 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITT 67
YTVDEAL +GFGK+Q VL YAG+GW++EAME+M+LSFVGP V+S WNLSS +ES IT+
Sbjct: 14 YTVDEALITLGFGKFQILVLIYAGIGWISEAMEMMLLSFVGPAVQSAWNLSSHQESFITS 73
Query: 68 SVFAGLVVGAYAWGLVADNYGRSGHVFL-------------------------------- 95
VFAG+++GAY+WG+V+D +GR +
Sbjct: 74 VVFAGMLIGAYSWGIVSDQHGRRKGFLITATVTATAGFFSSLSPNYVSLLVFRSLVGLGL 133
Query: 96 -------SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148
SWFLEFVP NRG WMV+FS FWT+G++ EA AWI+MPRL WRWLL LSS+P
Sbjct: 134 GGGPVLSSWFLEFVPAPNRGTWMVVFSGFWTVGTIFEASLAWIVMPRLGWRWLLALSSLP 193
Query: 149 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 208
+ LL F PESPRYLCLKGRT EA LE I+++N KLP+G LV+
Sbjct: 194 TSFLLLFYKMTPESPRYLCLKGRTTEAIDVLETISRLNGKKLPSGVLVSDNQIELQKIDN 253
Query: 209 PPELVHLLSSNGGN-KTTEGK----SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAV 263
P E LLS ++ +G G+S +L S KL+R+T+LLW + FGN+F+YY +
Sbjct: 254 PSEDTVLLSPRKSEVESPKGMISNLGGISSLRVLLSPKLSRSTLLLWAVFFGNAFSYYGL 313
Query: 264 VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 323
VLL SEL +++C + + QD + Y FI S AE+PGLLL+A+ VD GRKLS+
Sbjct: 314 VLLTSELKR-NSKCIPDKLQTEKSQDVS-YKGVFIASFAELPGLLLSAVAVDKLGRKLSM 371
Query: 324 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383
+IMF + C+FLLPL Y LTTGLLFGAR+C+ FT+ IYA EIYPTSVR+TG G
Sbjct: 372 SIMFFMCCIFLLPLTFYLPEDLTTGLLFGARICITVTFTIVYIYAPEIYPTSVRTTGVGV 431
Query: 384 ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 443
A+++GRIGGM+CPLVAV LV CHQ AV+L ++V + S + V+ PFET GQEL DTV
Sbjct: 432 ASSVGRIGGMLCPLVAVGLVHGCHQTAAVLLFIIVALVSGICVVFFPFETMGQELQDTVS 491
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443470|ref|XP_002273636.1| PREDICTED: synaptic vesicle 2-related protein [Vitis vinifera] gi|297735684|emb|CBI18371.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 254/486 (52%), Positives = 319/486 (65%), Gaps = 45/486 (9%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M ++ YTVD+AL +GFG +Q VLAYAG+GW++EAME+M+LSFVGP V+S W LSS
Sbjct: 1 MGDESPNYTVDDALVAMGFGNFQILVLAYAGMGWISEAMEMMLLSFVGPAVQSAWGLSSH 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGR-----------SGHVFLS------------- 96
EESLIT+ VFAG++VGAY+WG+V+DN+GR S FLS
Sbjct: 61 EESLITSVVFAGMLVGAYSWGIVSDNHGRRKGFLITAVVTSAAGFLSAFAPNYISLIILR 120
Query: 97 ---------------WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
WFLEF+P NRG WMVIFS FWT+G++ EA AW +MP L WRWL
Sbjct: 121 CLVGLGLGGGPVLSSWFLEFIPAPNRGTWMVIFSGFWTVGTILEASLAWCVMPTLGWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201
L LS++PS +LL F PESPRYLCLKGRT EA LEKIA++N+ +LP G LV+
Sbjct: 181 LALSALPSLLLLIFYRVTPESPRYLCLKGRTTEALSVLEKIARMNRAELPPGILVSDHQV 240
Query: 202 LPTGERAPPELVHLLSSNGGNKTTEGK-----SGLSLFLMLFSSKLARTTILLWLLLFGN 256
P E + LLS + ++ G+S ML S KL R+T+LLW++ FGN
Sbjct: 241 GVPENSNPSEDMKLLSPEADSGSSHKDIDSNMGGISSLFMLLSPKLLRSTLLLWMVFFGN 300
Query: 257 SFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT 316
+F+YY +VLL SEL++ +C + S QD N Y D FITS AE PGLLL+A VD
Sbjct: 301 AFSYYGLVLLTSELNNEQNKCGVAELQSEKTQDIN-YKDVFITSFAEFPGLLLSAATVDI 359
Query: 317 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
GRKLS++ MF L C+FLLPLV +Q LTT LLFGAR+C+ FTV IYA EIYPTSV
Sbjct: 360 LGRKLSMSAMFFLCCIFLLPLVFHQPQGLTTALLFGARICITVTFTVVYIYAPEIYPTSV 419
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436
R+TG G A+++GRIGGM+CPLVAV LV CHQ AV+L +VI S + V+L PFETKG+
Sbjct: 420 RTTGVGVASSVGRIGGMLCPLVAVGLVHGCHQAAAVILFEIVIFISGICVILFPFETKGR 479
Query: 437 ELSDTV 442
EL DT+
Sbjct: 480 ELKDTL 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224122710|ref|XP_002330449.1| predicted protein [Populus trichocarpa] gi|222871861|gb|EEF08992.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 244/490 (49%), Positives = 316/490 (64%), Gaps = 44/490 (8%)
Query: 1 MAEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSST 60
M + G YTVD+A+ +GFGK+Q VL YAG+GWV+E+ME+MILSFVGP VKS+W+L+S
Sbjct: 1 MTDGGPRYTVDDAILAMGFGKFQYLVLLYAGMGWVSESMEMMILSFVGPAVKSDWDLTSQ 60
Query: 61 EESLITTSVFAGLVVGAYAWGLVADNYGRS-----------GHVFLS------------- 96
+ESLIT+ VFAG++VGAY+WG+V+D GR G FLS
Sbjct: 61 QESLITSVVFAGMLVGAYSWGVVSDRCGRRKGFLVTAIITFGAGFLSAFSPNYITLLISR 120
Query: 97 ---------------WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141
WFLEFVP NRG WMVIFS+FWT G++ EA AWIIMPRL+WRWL
Sbjct: 121 CLVGLGLGGGPVLLAWFLEFVPAPNRGAWMVIFSAFWTFGAIFEAALAWIIMPRLNWRWL 180
Query: 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201
L LS++PSF LL F PESPRY CL+G+ +A L KIA+ N +LP G L
Sbjct: 181 LALSALPSFPLLLFYFMTPESPRYFCLEGQKIDALSVLNKIAKQNGKELPLGVLTTDNEI 240
Query: 202 LPTGERAPP----ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNS 257
G + P E V + S+ N L LML S KL R+T+LLW++ FGN+
Sbjct: 241 EAQGIKNLPTEGTEEVAIPSATPLNWKDSDMGVLKSLLMLLSPKLIRSTVLLWVVFFGNA 300
Query: 258 FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317
F+YY +VLL +EL++ C S D + Y + I S AE PGL+++A++VD
Sbjct: 301 FSYYGLVLLTTELNNRSNTCHHTKAQSQGSSDVD-YKEVLIASFAEFPGLIVSALIVDRI 359
Query: 318 GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377
GRKLS+ ++F +SC+FLLPLV +QS +TT LLFGAR+C+ G FT+ IYA EIYPTSVR
Sbjct: 360 GRKLSLAVLFFVSCIFLLPLVVHQSPSVTTVLLFGARICITGTFTIVFIYAPEIYPTSVR 419
Query: 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437
STG G A++MGRIGGM+CPLVAV+LV CHQ A++L V +I + VML PFETKG E
Sbjct: 420 STGIGVASSMGRIGGMICPLVAVSLVQGCHQTAALILFVCIIFVAGCCVMLFPFETKGLE 479
Query: 438 LSDTVDFTSD 447
L+D++ T +
Sbjct: 480 LTDSISSTKN 489
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 447 | ||||||
| TAIR|locus:2089270 | 500 | NiaP "nicotinate transporter" | 0.796 | 0.712 | 0.450 | 5e-108 | |
| WB|WBGene00014021 | 520 | svop-1 [Caenorhabditis elegans | 0.438 | 0.376 | 0.282 | 1.6e-47 | |
| ZFIN|ZDB-GENE-060526-336 | 549 | svopa "SV2 related protein hom | 0.355 | 0.289 | 0.305 | 3.8e-46 | |
| UNIPROTKB|F1MGL1 | 492 | SVOPL "Uncharacterized protein | 0.718 | 0.652 | 0.303 | 2.8e-43 | |
| UNIPROTKB|Q8N434 | 492 | SVOPL "Putative transporter SV | 0.718 | 0.652 | 0.298 | 2.6e-41 | |
| UNIPROTKB|E1BVZ2 | 490 | SVOPL "Uncharacterized protein | 0.434 | 0.395 | 0.295 | 3.6e-40 | |
| ZFIN|ZDB-GENE-070705-359 | 411 | svopb "SV2 related protein hom | 0.436 | 0.474 | 0.289 | 2.8e-39 | |
| UNIPROTKB|F6XK47 | 483 | SVOP "Uncharacterized protein" | 0.436 | 0.403 | 0.285 | 1e-32 | |
| UNIPROTKB|E2QZ16 | 548 | SVOP "Uncharacterized protein" | 0.436 | 0.355 | 0.285 | 1.9e-32 | |
| UNIPROTKB|Q8N4V2 | 548 | SVOP "Synaptic vesicle 2-relat | 0.436 | 0.355 | 0.285 | 2.5e-32 |
| TAIR|locus:2089270 NiaP "nicotinate transporter" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 789 (282.8 bits), Expect = 5.0e-108, Sum P(2) = 5.0e-108
Identities = 165/366 (45%), Positives = 217/366 (59%)
Query: 91 GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 150
G V SW+LEF+P +RG WMV+FS+FWT+G++ EA AW++MPRL WRWLL SS+PS
Sbjct: 130 GPVLASWYLEFIPAPSRGTWMVVFSAFWTVGTIFEASLAWLVMPRLGWRWLLAFSSVPSS 189
Query: 151 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST-LPTGERAP 209
+LL F + ESPRYL L+GR AEA LEKIA++NKT+LP G L + T L + P
Sbjct: 190 LLLLFYRWTSESPRYLILQGRKAEALAILEKIARMNKTQLPPGVLSSELETELEENKNIP 249
Query: 210 PELVHLLSSN-GGNKTTEXXXXXXXXXXXXXXXXA-------RTTIXXXXXXFGNSFAYY 261
E HLL + G A + T+ FGN+FAYY
Sbjct: 250 TENTHLLKAGESGEAVAVSKIVLKADKEPGFSLLALLSPTLMKRTLLLWVVFFGNAFAYY 309
Query: 262 AVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 321
VVLL +EL++ RC + D N Y D FI S AE PGLL++A +VD GRK
Sbjct: 310 GVVLLTTELNNSHNRCYPTEKQLRNSNDVN-YRDVFIASFAEFPGLLISAAMVDRLGRKA 368
Query: 322 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGA 381
S+ M C+FLLPL+++QS +TT LLFG R+C+ AFTV IYA EIYPT+VR+TG
Sbjct: 369 SMASMLFTCCIFLLPLLSHQSPFITTVLLFGGRICISAAFTVVYIYAPEIYPTAVRTTGV 428
Query: 382 GAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXXXXXXXXXXXXXXIPFETKGQELSDT 441
G +++GRIGG++CPLVAV LV CHQ PFET G++L+D+
Sbjct: 429 GVGSSVGRIGGILCPLVAVGLVHGCHQTIAVLLFEVVILVSGICVCLFPFETSGRDLTDS 488
Query: 442 VDFTSD 447
+ + +
Sbjct: 489 ISASKE 494
|
|
| WB|WBGene00014021 svop-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 235 (87.8 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 58/205 (28%), Positives = 96/205 (46%)
Query: 244 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH-------HPQDANLYIDE 296
+TTI +F+YY +VL + L C L FS+ P + Y D
Sbjct: 317 KTTILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGL-FSNGTQMEVCQPLTRSDYFDL 375
Query: 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 356
T+LAE PGL++ ++++ GRK ++ + + + +F L T L+F AR
Sbjct: 376 LSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAF 435
Query: 357 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXX 416
+ GAF + +Y E+YPT++R+ G G +AM RIG +V P +A + +
Sbjct: 436 ISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA-QVASEKSLSLPIGIYG 494
Query: 417 XXXXXXXXXXXXIPFETKGQELSDT 441
+P ETKG+++ D+
Sbjct: 495 TAAILGLIASLSLPIETKGRQMMDS 519
|
|
| ZFIN|ZDB-GENE-060526-336 svopa "SV2 related protein homolog a (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 218 (81.8 bits), Expect = 3.8e-46, Sum P(3) = 3.8e-46
Identities = 51/167 (30%), Positives = 84/167 (50%)
Query: 245 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ--------DANLYIDE 296
TT+ F N+F+YY VVLL +EL C P +++ Y D
Sbjct: 316 TTVLLWFIWFSNAFSYYGVVLLTTELFQEGGVCGGAKGSKMEPGCSLECKYLNSDDYKDL 375
Query: 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 356
T+L+E PGLL+ +D GR+ ++ + F + L ++PL + T +F AR
Sbjct: 376 LWTTLSEFPGLLVTLWAIDRLGRRKTMALCFFVFSLCIVPLYSCVGRTSLTVFIFIARAF 435
Query: 357 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403
+ G F + +Y E+YPT+ R+ G G ++ M R+G ++ P VA ++
Sbjct: 436 IAGGFQAAYVYTPEVYPTATRALGLGTSSGMARVGALITPFVAQVML 482
|
|
| UNIPROTKB|F1MGL1 SVOPL "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 112/369 (30%), Positives = 163/369 (44%)
Query: 88 GRSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG-AWIIMPRLDWRWLLGLS 145
G SGH L EF+P RG + + FW GS+ IG A +++P + WRWL+ ++
Sbjct: 150 GVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLL-IIGLASVVVPTIGWRWLIRIA 208
Query: 146 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 205
SIP IL+ F PES R+ G T A LE+IA++N++ +P GKLV P
Sbjct: 209 SIPGIILIMAFKFIPESARFNVSTGNTQAALATLERIAKMNRSVMPEGKLVE-----PIL 263
Query: 206 ERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVL 265
E+ LL + RTT+ G SFAYY V+L
Sbjct: 264 EKRG-RFADLLDAK----------------------YLRTTLQIWVIWLGISFAYYGVIL 300
Query: 266 LISELSSLDTRC--RSP---------LMFSHHPQDANLYIDE-----FITSLAEIPGLLL 309
+EL D C RS L S P +++ I+++ EI L
Sbjct: 301 ASAELLERDLVCGSRSESEVAVTVGVLEESQSPCYCHMFAPSDYRTMIISTIGEIALNPL 360
Query: 310 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 369
+ ++ GR+LS++I + LF L L S+ G LF R V F IY A
Sbjct: 361 NILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTIYIYTA 420
Query: 370 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXXXXXXXXXXXXXXI 429
E+YPT++R+ G G + ++ RIG MV P ++ L++ +
Sbjct: 421 EVYPTAMRALGMGTSGSLCRIGAMVAPFISQVLMSASF-LGALCLFASVCVVCAISAFTL 479
Query: 430 PFETKGQEL 438
P ETKG+ L
Sbjct: 480 PIETKGRAL 488
|
|
| UNIPROTKB|Q8N434 SVOPL "Putative transporter SVOPL" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 311 (114.5 bits), Expect = 2.6e-41, Sum P(2) = 2.6e-41
Identities = 110/369 (29%), Positives = 163/369 (44%)
Query: 88 GRSGHVF-LSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIG-AWIIMPRLDWRWLLGLS 145
G SGH L EF+P RG + + FW GS+ IG A +I+P + WRWL+ ++
Sbjct: 150 GVSGHSQGLIIKTEFLPTKYRGYMLPLSQVFWLAGSLL-IIGLASVIIPTIGWRWLIRVA 208
Query: 146 SIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 205
SIP IL+ F PES R+ G T A LE++A++N++ +P GKLV P
Sbjct: 209 SIPGIILIVAFKFIPESARFNVSTGNTRAALATLERVAKMNRSVMPEGKLVE-----PVL 263
Query: 206 ERAPPELVHLLSSNGGNKTTEXXXXXXXXXXXXXXXXARTTIXXXXXXFGNSFAYYAVVL 265
E+ LL + RTT+ G SFAYY V+L
Sbjct: 264 EKRG-RFADLLDAK----------------------YLRTTLQIWVIWLGISFAYYGVIL 300
Query: 266 LISELSSLDTRCRSP----LMF-------SHHPQDANLYIDE-----FITSLAEIPGLLL 309
+EL D C S ++ S P +++ I+++ EI L
Sbjct: 301 ASAELLERDLVCGSKSDSAVVVTGGDSGESQSPCYCHMFAPSDYRTMIISTIGEIALNPL 360
Query: 310 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 369
+ ++ GR+LS++I + LF L L S+ G LF R V F IY A
Sbjct: 361 NILGINFLGRRLSLSITMGCTALFFLLLNICTSSAGLIGFLFMLRALVAANFNTVYIYTA 420
Query: 370 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXXXXXXXXXXXXXXXXI 429
E+YPT++R+ G G + ++ RIG MV P ++ L++ +
Sbjct: 421 EVYPTTMRALGMGTSGSLCRIGAMVAPFISQVLMS-ASILGALCLFSSVCVVCAISAFTL 479
Query: 430 PFETKGQEL 438
P ETKG+ L
Sbjct: 480 PIETKGRAL 488
|
|
| UNIPROTKB|E1BVZ2 SVOPL "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 3.6e-40, Sum P(3) = 3.6e-40
Identities = 62/210 (29%), Positives = 91/210 (43%)
Query: 244 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRS---------PLMFSH------HPQ 288
RTT+ G +FAYY V+L +EL D C S P+ HP
Sbjct: 278 RTTLQIWIIWLGIAFAYYGVILASAELLERDLGCTSRTPPSENAGPVSEESRSPCYCHPF 337
Query: 289 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTG 348
+ Y I++ EI L + ++ GR+LS+ I + LF L L S+ TG
Sbjct: 338 GPSAYRTMIISTAGEIALNPLNILGINFLGRRLSLCITMGCTALFFLLLNVCTSSAGMTG 397
Query: 349 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ 408
LF R V F IY AE+YPT++R+ G G + ++ R+G MV P ++ L++
Sbjct: 398 FLFMLRALVSANFNTIYIYTAEVYPTTMRALGMGTSGSLCRVGAMVAPFISQVLMSASF- 456
Query: 409 XXXXXXXXXXXXXXXXXXXXIPFETKGQEL 438
+P ETKG+ L
Sbjct: 457 LGALCLFSSVCVVCAISAFTLPIETKGRAL 486
|
|
| ZFIN|ZDB-GENE-070705-359 svopb "SV2 related protein homolog b (rat)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 2.8e-39, Sum P(3) = 2.8e-39
Identities = 60/207 (28%), Positives = 100/207 (48%)
Query: 244 RTTIXXXXXXFGNSFAYYAVVLLISELSSLDTRC---------RSPLMFSHHPQDANLYI 294
RTT+ F ++F YY +VLL +EL + C + LM H D Y+
Sbjct: 200 RTTLLVWCIWFFSAFLYYGLVLLTTELFQAGSACVTENSNIEHQCSLMCQHLTIDD--YL 257
Query: 295 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGAR 354
D T+ AE PGLL+A +V+ R+ S+ I F+L + +LPL I+ T +F AR
Sbjct: 258 DLLWTTFAEFPGLLVALWMVNRISRRKSMVICFSLFTVCILPLYACTHRIVLTVFIFIAR 317
Query: 355 MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXX 414
+ + ++ +Y E++PT+ R+ G G ++ M R+G +V P +A L+ +
Sbjct: 318 TSINAGWQIAYVYTPEVFPTATRAIGIGTSSGMSRVGALVTPFIAQVLLKSS-VYLTLSV 376
Query: 415 XXXXXXXXXXXXXXIPFETKGQELSDT 441
+P ET+G+ L ++
Sbjct: 377 YLIFGLLGTAACWALPMETEGRSLQES 403
|
|
| UNIPROTKB|F6XK47 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.0e-32, Sum P(2) = 1.0e-32
Identities = 59/207 (28%), Positives = 96/207 (46%)
Query: 245 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YID 295
TT+ F N+F+YY +VLL +EL C +L Y+D
Sbjct: 251 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEYLSEEDYMD 310
Query: 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGAR 354
T+L+E PG+L+ ++D GRK ++ + F + S LL + N+LT LLF AR
Sbjct: 311 LLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLTL-LLFIAR 369
Query: 355 MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXX 414
+ G F + +Y E+YPT+ R+ G G + M R+G ++ P +A ++ +
Sbjct: 370 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS-VYLTLAV 428
Query: 415 XXXXXXXXXXXXXXIPFETKGQELSDT 441
+P ETKG+ L ++
Sbjct: 429 YSGCCLLAALASCFLPIETKGRGLQES 455
|
|
| UNIPROTKB|E2QZ16 SVOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 59/207 (28%), Positives = 96/207 (46%)
Query: 245 TTIXXXXXXFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL---------YID 295
TT+ F N+F+YY +VLL +EL C +L Y+D
Sbjct: 316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSQKKAVEAKCSLACEYLSEEDYMD 375
Query: 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGAR 354
T+L+E PG+L+ ++D GRK ++ + F + S LL + N+LT LLF AR
Sbjct: 376 LLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSLCSLLLFICVGRNMLTL-LLFIAR 434
Query: 355 MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXX 414
+ G F + +Y E+YPT+ R+ G G + M R+G ++ P +A ++ +
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS-VYLTLAV 493
Query: 415 XXXXXXXXXXXXXXIPFETKGQELSDT 441
+P ETKG+ L ++
Sbjct: 494 YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
| UNIPROTKB|Q8N4V2 SVOP "Synaptic vesicle 2-related protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 226 (84.6 bits), Expect = 2.5e-32, Sum P(2) = 2.5e-32
Identities = 59/207 (28%), Positives = 97/207 (46%)
Query: 245 TTIXXXXXXFGNSFAYYAVVLLISEL---------SSLDTRCRSPLMFSHHPQDANLYID 295
TT+ F N+F+YY +VLL +EL SS + + Y+D
Sbjct: 316 TTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMD 375
Query: 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTL-SCLFLLPLVTYQSNILTTGLLFGAR 354
T+L+E PG+L+ ++D GRK ++ + F + S LL + N+LT LLF AR
Sbjct: 376 LLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTL-LLFIAR 434
Query: 355 MCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQXXXXXX 414
+ G F + +Y E+YPT+ R+ G G + M R+G ++ P +A ++ +
Sbjct: 435 AFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESS-VYLTLAV 493
Query: 415 XXXXXXXXXXXXXXIPFETKGQELSDT 441
+P ETKG+ L ++
Sbjct: 494 YSGCCLLAALASCFLPIETKGRGLQES 520
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q940M4 | OCT7_ARATH | No assigned EC number | 0.4758 | 0.9955 | 0.89 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 447 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 2e-64 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-24 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 7e-20 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 1e-19 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 6e-15 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 2e-12 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 2e-11 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 9e-11 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-07 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-06 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 8e-05 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-04 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 0.003 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-64
Identities = 124/489 (25%), Positives = 202/489 (41%), Gaps = 97/489 (19%)
Query: 2 AEQGHVYTVDEALTHVGFGKYQCFVLAYAGLG--WVAEAMEIMILSFV--GPTVKSEWNL 57
E + VD+ G C L + LG ++ S+ T+ +EW+L
Sbjct: 65 PESCLRFMVDQWANPSLLG---CEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDL 121
Query: 58 SSTEE---SLITTSVFAGLVVGAYAWGLVADNYGRSGHVFLS------------------ 96
+ L + F G+++G++ +G ++D +GR + LS
Sbjct: 122 VCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT 181
Query: 97 WFL----------------------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 134
FL EF+P R + + F+++G V + A+ I
Sbjct: 182 VFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP- 240
Query: 135 RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGK 194
DWRWL S+P+F+ F PESPR+L +GR EA + L++IA++N KLP
Sbjct: 241 --DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEV 298
Query: 195 LVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLF 254
L L + K S + + L +TT+ L +L F
Sbjct: 299 LS------------LSLEKDL---------SSSKKQYSFLDLFRTPNLRKTTLCLMMLWF 337
Query: 255 GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 314
+F+YY +VL + L N+Y+D FI+ L E+P L+ +L+
Sbjct: 338 TTAFSYYGLVLDLGNL------------------GGNIYLDLFISGLVELPAKLITLLLI 379
Query: 315 DTAGRKLSITIMFTL--SCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372
D GR+ ++ L L LL V L T L + + AF + +Y AE+Y
Sbjct: 380 DRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELY 439
Query: 373 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432
PT VR+ G G + M R+G ++ P + + V+ + ++ IL++ L P E
Sbjct: 440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKW-LFLPLVLFGGLALLAGILTLFL-P-E 496
Query: 433 TKGQELSDT 441
TKG L +T
Sbjct: 497 TKGVPLPET 505
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 93/431 (21%), Positives = 156/431 (36%), Gaps = 95/431 (22%)
Query: 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWG 81
YQ + + L + + ++ + F P + +EW L + + ++ G+ GA +G
Sbjct: 14 YQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFG 73
Query: 82 LVADNYGRSGHVFLSWFL----------------------------------------EF 101
+AD GR + S L E+
Sbjct: 74 PLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133
Query: 102 VPPSNRGMWMVIFSSFWTIG-SVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQ 159
P RG + + + IG +V + W+I P WR L + I +LL L F
Sbjct: 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI-PVFGWRSLFYVGGIAPLLLLLLLMRFL 192
Query: 160 PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 219
PES +L K R R + IA P + + +
Sbjct: 193 PESIDFLVSK-RPETVRRIVNAIA-------------------PQMQAEAQSALPEQKAT 232
Query: 220 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV----LLISELSSLDT 275
G K S+F LF K AR T+LLWLL F Y + L+ EL +
Sbjct: 233 QGTKR-------SVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLS 285
Query: 276 RCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLL 335
A + + + G ++ L D G ++ ++ L +F +
Sbjct: 286 L-------------AATGG--ALFNFGGVIGSIIFGWLADRLGPRV-TALLLLLGAVFAV 329
Query: 336 PLVTYQSN---ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 392
+ + + +L G + G V G + A YPT++R+TG G A +GR+G
Sbjct: 330 LVGSTLFSPTLLLLLGAIAG--FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGA 387
Query: 393 MVCPLVAVALV 403
++ P++A L+
Sbjct: 388 IIGPILAGYLL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 7e-20
Identities = 71/361 (19%), Positives = 122/361 (33%), Gaps = 68/361 (18%)
Query: 100 EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI------IMPRLDWRWLLGLSSIPSFILL 153
E P RG ++ T G + + A I WR LGL +P+ +LL
Sbjct: 128 EIAPKKLRGALGSLYQLGITFGIL---VAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLL 184
Query: 154 AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 213
L F PESPR+L LKG+ EA L K+ V+ E+
Sbjct: 185 IGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVD--------------------QEIQ 224
Query: 214 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFG---NSFAYYAVVLLISEL 270
S + E S L LF + ++L + N+ YY+ +
Sbjct: 225 EEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIF---- 280
Query: 271 SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAE----IPGLLLAAILVDTAGRK-LSITI 325
+ D + ++ +A LVD GR+ L +
Sbjct: 281 ------------------ETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLG 322
Query: 326 MFTLSCLFLLPLVTY--QSNILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVR 377
++ FL+ V + G++ + + AF V + +E++P VR
Sbjct: 323 AAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVR 382
Query: 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437
A A + + + + +V ++++ + +P ETKG+
Sbjct: 383 PKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVP-ETKGRT 441
Query: 438 L 438
L
Sbjct: 442 L 442
|
Length = 449 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 91.6 bits (227), Expect = 1e-19
Identities = 76/330 (23%), Positives = 130/330 (39%), Gaps = 65/330 (19%)
Query: 14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGL 73
+ G G++Q + GL +A+ +E+ ++ FV P+ + + + + + ++ V+ G+
Sbjct: 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGM 215
Query: 74 VVGAYAWGLVADNYGR---------------------SGHVFL----------------- 95
+VGA+ WG +AD GR G+ F
Sbjct: 216 MVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPI 275
Query: 96 --SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG---------- 143
S+F EF+ RG + FW IG + A AW I+P W + +G
Sbjct: 276 VFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRV 335
Query: 144 ---LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 200
+ + P + L F PESPR+ G+ EA L+ I N + + V +
Sbjct: 336 FVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVN 395
Query: 201 TLPTGERAPPELVHLLSSNGG-------NKTTEGKSGLSLFLMLFSSKLARTTILLWLLL 253
+ T + EL+ + S G +EG FL F+ ++ TI L +
Sbjct: 396 HIKTIHQE-DELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW 454
Query: 254 FGNSFAYYAVVL----LISELSSLDTRCRS 279
F SF YY + + +I L + D +
Sbjct: 455 FTLSFGYYGLSVWFPDMIKHLQADDYAALT 484
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-15
Identities = 77/360 (21%), Positives = 128/360 (35%), Gaps = 50/360 (13%)
Query: 100 EFVPPSNRGMWMVIFSSFWTIGSVSEAI---GAWIIMPRLDWRWLLGLSSIPSFILLAFL 156
E P + RG ++ T G + G + L WR LGL IP+ +L L
Sbjct: 154 EIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL 213
Query: 157 GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216
F PESPR+L KGR EA ++L ++ T + +L+ + V
Sbjct: 214 FFLPESPRWLVGKGRVEEARKSLARL---RGTSGEDKELLDELELIDIKRSIEKRSV--- 267
Query: 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL--WLLLF--GNSFAYYAVVLLISELSS 272
S SLF + ++ W F N+ YY+ + + S
Sbjct: 268 ----------QPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVS 317
Query: 273 LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK--LSITIMFTLS 330
D + S I +A LVD GR+ L I
Sbjct: 318 TDH----AFLVS------------IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAI 361
Query: 331 CLFLLPLVTYQS---NILTTGLLFGARMCVMGAF------TVSLIYAAEIYPTSVRSTGA 381
CLF+L ++ + ++G + + + AF V + +EI+P S+R G
Sbjct: 362 CLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421
Query: 382 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441
A A + + + ++ + + + V ++ V ETKG+ L +
Sbjct: 422 SIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 12/187 (6%)
Query: 237 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296
LF A T+LLW+ F Y L++ L SL + + + +
Sbjct: 213 LFGEGRATATLLLWISYFFTLIVLY---FLLNWLPSL--------LVGQGLSRSQAGLVQ 261
Query: 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 356
++ G LL L+D + + +++ L L S F A +
Sbjct: 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLF 321
Query: 357 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLV 416
V+G +V A YPT VR TG GAA A+GR+G M PL+A L+A + T V+
Sbjct: 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLA-LGRSTVGVIGA 380
Query: 417 VVIVTSI 423
+ V +
Sbjct: 381 SIPVILV 387
|
Length = 406 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 83/451 (18%), Positives = 152/451 (33%), Gaps = 103/451 (22%)
Query: 13 ALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAG 72
H+ ++ F A+ LGW+ +A + +++ V V E+ L++ + + + ++
Sbjct: 2 WYRHLTRAQWNAFSAAW--LGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALIS 59
Query: 73 LVVGAYAWGLVADNYGRSGHVFLSWFL--------------------------------- 99
GA +GL D YGR + S L
Sbjct: 60 RWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYG 119
Query: 100 -------EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--WRWLLGLSSIPSF 150
E P R + S + +G+V A +++P WR L +S +P
Sbjct: 120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPII 179
Query: 151 ILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 210
L PE+ + E H + + +A
Sbjct: 180 FALWLRKNIPEAEDW-------KEKHAGKALVRTMVDILYGGEHRIANI----------- 221
Query: 211 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL 270
+M ++ + ++ W F Y V++L + L
Sbjct: 222 ------------------------VMTLAAAMVQSAGKRWPT-----FVYLVVLVLFANL 252
Query: 271 SS------LDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 324
S L T ++ L S H + +++ I G + L D GR+ +
Sbjct: 253 YSHPIQDLLPTYLKADLGLSPHTVANIV----VFSNIGAIVGGCVFGFLGDWLGRRKAYV 308
Query: 325 IMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383
L ++P+ +N+ GL LF +M V G + + + E +PT R+ G G
Sbjct: 309 CSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGF 368
Query: 384 ANAMGRIGGMVCPLVAVALVANCHQMTAVVL 414
+G +GG + P++ AL+A L
Sbjct: 369 TYQLGNLGGALAPIIG-ALLAQRLDEYGTAL 398
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 9e-11
Identities = 55/203 (27%), Positives = 82/203 (40%), Gaps = 11/203 (5%)
Query: 229 SGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQ 288
+ L L L L L R +LL L F SF YY ++ + L
Sbjct: 160 AILGLLLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLY----------LQEVLGLS 209
Query: 289 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS-ITIMFTLSCLFLLPLVTYQSNILTT 347
A + + L I G LL +L D GR+ + I L+ L LL L S L
Sbjct: 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLL 269
Query: 348 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 407
L + AF L A+E+ P R T +G N G +GG + PL+A L+
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Query: 408 QMTAVVLLVVVIVTSILSVMLIP 430
++L + + + L ++L+P
Sbjct: 330 YGGVFLILAALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 6e-07
Identities = 79/353 (22%), Positives = 128/353 (36%), Gaps = 61/353 (17%)
Query: 115 SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAE 174
S + G+ + WR L+G ++P+ + L F PE+PRY + E
Sbjct: 180 HSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE 239
Query: 175 AHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 234
A + + + K+ A + E+A + +S T K
Sbjct: 240 -------QAASDMSAVLQVKIEAEPDEV---EKASTAVEVPKASWSDFFTHFFKW--RHG 287
Query: 235 LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYI 294
L T W LL A+Y V L + S + +S N Y
Sbjct: 288 KHLLG------TAGSWFLL---DIAFYGVNLNQKVILSA-------IGYSPPAATNNAYE 331
Query: 295 DEFITSLAEI--------PGLLLAAILVDTAGRKLSITIM--FTLSCLFLLPLVTYQSNI 344
+ + T++ + PG + LVD GRK I +M F L+ LF + Y N
Sbjct: 332 ELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRK-PIQLMGFFILTVLFFVLGFAY--NH 388
Query: 345 LTTGLLFGARMCVMGAF-------TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 397
L+T + V+ F + I E++PT RST G + A G+ G ++
Sbjct: 389 LSTHGFLA--IYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQF 446
Query: 398 VAVALV----------ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 440
+ L + + + + IL +LIP ETKG+ L +
Sbjct: 447 GFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP-ETKGKSLEE 498
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 108 GMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLC 167
G +V F +++ S + W+ WR++ +IP+ + L L F PE+PRYL
Sbjct: 168 GQLVVYFVNYFIARSGDAS---WLNT--DGWRYMFASEAIPALLFLMLLYFVPETPRYLM 222
Query: 168 LKGRTAEAHRALEKI 182
+G+ +A L KI
Sbjct: 223 SRGKQEQAEGILRKI 237
|
Length = 479 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 37/154 (24%), Positives = 73/154 (47%), Gaps = 16/154 (10%)
Query: 292 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTYQSNILTTGL 349
+Y F+ +LA +PG +++A+L+D GR + LSC+ F L +S ++
Sbjct: 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMI---- 652
Query: 350 LFGARMCVMGAFTVSL-----IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 404
A +C+ G +++ + E+YP+ R+T G NA+ + ++ L+ + V
Sbjct: 653 ---ALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG 709
Query: 405 NCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438
+ + +L++ L P +T+GQ L
Sbjct: 710 ITKAAPILFASAALACGGLLALKL-P-DTRGQVL 741
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 40/172 (23%)
Query: 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN 86
L LG+ ++ +LS P + + LS+++ LI ++ G +G+ G ++D
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 87 YGR-----------------------SGHVFLSWFL-----------------EFVPPSN 106
+GR + + FL E+ PP
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE 120
Query: 107 RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGF 158
RG + +FS+ + +G++ + ++ L WRWL + +I +L L F
Sbjct: 121 RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 8e-05
Identities = 60/406 (14%), Positives = 117/406 (28%), Gaps = 108/406 (26%)
Query: 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-- 89
++A ++ + + + +S TE L+ T+ G + G ++D +GR
Sbjct: 4 AAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRR 63
Query: 90 ---------------------SGHVFLSWFL-----------------EFVPPSNRGMWM 111
+ + L ++ PP RG +
Sbjct: 64 VLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRAL 123
Query: 112 VIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGR 171
+ S+ + +G+ + ++ WR + +I + + L R
Sbjct: 124 GLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLA---------ALLLPR 174
Query: 172 TAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGL 231
+ + + +P KL+ R L
Sbjct: 175 PPPESKRPKPAEEAPAPLVPAWKLLLRDPV-----------------------------L 205
Query: 232 SLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 291
L L L A +L +L L+ A++ + L+
Sbjct: 206 WLLLALLLFGFAFFALLTYLPLYQEVLGLSALL--------------AGLLLG------- 244
Query: 292 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF---TLSCLFLLPLVTYQSNILTTG 348
+ L G LL L D GR+ + + L+ L L L +S++
Sbjct: 245 ------LAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLV 298
Query: 349 LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV 394
L F +++ P R T +G N G +GG +
Sbjct: 299 ALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGAL 344
|
Length = 346 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 357
SL LA L D GR+ + I L L LL L+ S L L +
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGG 99
Query: 358 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLV 416
F + A+ +P R G +A +G + PL+ L + + ++L +
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159
Query: 417 VVIVTSILSVMLIP 430
+ ++ ++L+ +L+P
Sbjct: 160 LALLAAVLAALLLP 173
|
Length = 346 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 5/109 (4%)
Query: 309 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGA----FTVS 364
L+ L D GR+ + I L+ L +PL+ + + L F + +
Sbjct: 274 LSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPM 333
Query: 365 LIYAAEIYPTSVRSTGAG-AANAMGRIGGMVCPLVAVALVANCHQMTAV 412
+ E++PT VR TGA A N G I G P +A ALVA A+
Sbjct: 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAI 382
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 29/133 (21%), Positives = 50/133 (37%)
Query: 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCV 357
SL G LLA L D GR+ + + L L L L S L F +
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGG 101
Query: 358 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVV 417
+ + AE +P R G +A +G ++ PL+ L + ++L +
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161
Query: 418 VIVTSILSVMLIP 430
+ + L ++ +
Sbjct: 162 LGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.98 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.97 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.94 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.92 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.92 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.9 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.9 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.89 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.89 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.89 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.88 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.88 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.88 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.88 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.87 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.87 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.87 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.87 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.87 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.87 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.86 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.86 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.86 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.86 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.85 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.85 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.84 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.84 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.84 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.84 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.84 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.84 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.84 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.83 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.83 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.82 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.81 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.81 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.81 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.81 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.8 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.8 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.79 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.79 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.79 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.78 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.77 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.76 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.76 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.75 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.75 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.73 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.63 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.62 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.61 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.6 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.6 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.59 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.59 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.58 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.58 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.57 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.57 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.56 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.55 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.53 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.53 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.49 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.46 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.46 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.44 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.42 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.29 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.28 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.28 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.28 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.22 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.22 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.21 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.19 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.15 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.12 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.11 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.11 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.1 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.1 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.1 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.1 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.09 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.09 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.09 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.08 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.07 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.06 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.06 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.05 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.05 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.05 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.04 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.03 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.02 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.01 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.0 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.99 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.99 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.99 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.95 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.95 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.95 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.92 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.9 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.9 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.87 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.86 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.84 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.84 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.84 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.84 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.81 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.78 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.77 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.76 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.76 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.75 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.75 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.74 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.73 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.73 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.72 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.72 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.72 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.7 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.7 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.7 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.7 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.69 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.69 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.67 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.66 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.66 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.65 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.64 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.59 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.58 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.58 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 98.57 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.56 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.56 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.56 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.56 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.55 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.52 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.51 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 98.51 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.5 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.49 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.48 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.47 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.46 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.42 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.4 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.4 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.4 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.37 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.35 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.34 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.33 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.29 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.25 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.22 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.21 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.16 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.14 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 98.1 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.05 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 98.01 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.01 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.0 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 97.99 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 97.97 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.95 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.87 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.81 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.8 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.78 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.75 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 97.75 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 97.72 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.71 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.69 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.65 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.59 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.59 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.47 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.42 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 97.37 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.35 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.21 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 97.19 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.14 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.09 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.03 | |
| PRK11462 | 460 | putative transporter; Provisional | 96.93 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 96.92 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 96.91 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.91 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 96.68 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.6 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 96.59 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.58 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 96.53 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.45 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.29 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.17 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 95.98 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 95.65 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 95.16 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.02 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 93.8 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 93.75 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 93.65 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 93.23 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 92.96 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 92.59 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 92.08 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 91.54 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 91.51 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 91.11 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 90.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 90.32 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 89.29 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 89.03 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 88.96 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 88.59 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 87.77 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 81.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 81.29 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 80.65 |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-60 Score=431.11 Aligned_cols=424 Identities=38% Similarity=0.635 Sum_probs=357.7
Q ss_pred CCCCccccHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHH
Q 013219 2 AEQGHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWG 81 (447)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G 81 (447)
++.++..++|++++++||||||+...+.++.+|+.|+++-+..+++.|..++.|+++..+..+++...+.|.++|+..+|
T Consensus 55 ~~~~k~~tv~ea~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~ 134 (528)
T KOG0253|consen 55 SDTAKSFTVDEAMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWG 134 (528)
T ss_pred ccccceeeehhhhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhh
Confidence 34456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhCCc---------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhh
Q 013219 82 LVADNYGRS---------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 122 (447)
Q Consensus 82 ~l~Dr~GRr---------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 122 (447)
.++|++||| .|+..++..|..|...|+..+... .+|.+|.
T Consensus 135 l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~ 213 (528)
T KOG0253|consen 135 LSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQ 213 (528)
T ss_pred eehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHH
Confidence 999999999 344455678999999999998888 9999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccC
Q 013219 123 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 202 (447)
Q Consensus 123 l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (447)
+..+.+++...++.|||+...+..+|..+.....+++||||||++.+|+.+||.++++|+++.|++++|..+++...+.+
T Consensus 214 v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~ 293 (528)
T KOG0253|consen 214 VFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDR 293 (528)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998876654322222
Q ss_pred CCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Q 013219 203 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLM 282 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~ 282 (447)
.++ ++...++. +.+.. ++..+....+++++.||+++++|.+|++|.+.||++.++...+.+..+-|...+-
T Consensus 294 ~e~------e~~~~~~~-~~~a~--ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r 364 (528)
T KOG0253|consen 294 QEQ------EESDLDDS-KSSAA--KEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNR 364 (528)
T ss_pred hhh------hhhchhhh-hhccc--cccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchh
Confidence 111 11111111 11111 1223467789999999999999999999999999999988877655544433221
Q ss_pred ------c----cCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013219 283 ------F----SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFG 352 (447)
Q Consensus 283 ------~----~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 352 (447)
. ..... ..-|.+.++.++.++||.++.++++||+|||..+..+++.++++.+++....+.....+.+|.
T Consensus 365 ~~p~e~e~~~~c~~s~-~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~ 443 (528)
T KOG0253|consen 365 FLPTELETRANCPLSV-AKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFT 443 (528)
T ss_pred cchhHHHhhhcCCccc-hhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 1 11222 234788899999999999999999999999999999999999998877765555556677788
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
+.+|+.+++.+.|+|++|+|||.+|++|+|.|..++|++++++|++. +........+.++++.+++++.+++.++|.|
T Consensus 444 arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 444 ARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred HHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 88899999999999999999999999999999999999999999887 4555555667899999999999999999999
Q ss_pred ccCCCc
Q 013219 433 TKGQEL 438 (447)
Q Consensus 433 tkg~~l 438 (447)
||||++
T Consensus 522 tkGR~l 527 (528)
T KOG0253|consen 522 TKGRSL 527 (528)
T ss_pred cCCCCC
Confidence 999986
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=405.41 Aligned_cols=428 Identities=25% Similarity=0.410 Sum_probs=314.9
Q ss_pred ccHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh
Q 013219 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY 87 (447)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~ 87 (447)
-..|+++|+++++++||+++++++++++.+++|.+.++++.|.+.++++++..+.+++.+++++|.++|++++|+++||+
T Consensus 150 ~~~d~~l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~ 229 (742)
T TIGR01299 150 QQYELIIQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL 229 (742)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCc----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHH
Q 013219 88 GRS----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI 127 (447)
Q Consensus 88 GRr----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~ 127 (447)
||| .++..+++.|++|++.||+..++.+.++.+|.++++.
T Consensus 230 GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~ 309 (742)
T TIGR01299 230 GRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAA 309 (742)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 2344567889999999999999999999999999887
Q ss_pred HHHHHcC-------------CCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCC--CC
Q 013219 128 GAWIIMP-------------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL--PN 192 (447)
Q Consensus 128 ~~~~~~~-------------~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~--~~ 192 (447)
+++.+.+ ..+||++++++++|.++.++.++++|||||||..+||.+||.++++++++.|.+.. +.
T Consensus 310 la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~ 389 (742)
T TIGR01299 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE 389 (742)
T ss_pred HHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence 7765432 23699999999999999888889999999999999999999999999987765321 10
Q ss_pred Cccccc-cccCCCCCCCCCcccccccC-CCC---CCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013219 193 GKLVAR-RSTLPTGERAPPELVHLLSS-NGG---NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 267 (447)
Q Consensus 193 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 267 (447)
.....+ .+.+ ....+..+.++.... ..+ .........+..++++|+++++++++++|++|++..+.||++..|.
T Consensus 390 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~ 468 (742)
T TIGR01299 390 KVFSVNHIKTI-HQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWF 468 (742)
T ss_pred HHHHHHHHHHh-hhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000 0000 000000000000000 000 0000001123357789999999999999999999999999999999
Q ss_pred HHhhccc--------------------------------------------------------ccccCCCcccC------
Q 013219 268 SELSSLD--------------------------------------------------------TRCRSPLMFSH------ 285 (447)
Q Consensus 268 ~~l~~~~--------------------------------------------------------~~~~~~~~~~~------ 285 (447)
|.+.... ..|+-+.....
T Consensus 469 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 548 (742)
T TIGR01299 469 PDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKN 548 (742)
T ss_pred HHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhc
Confidence 8653110 00100000000
Q ss_pred ---------C-----------------------C-------C---ChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH
Q 013219 286 ---------H-----------------------P-------Q---DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI 323 (447)
Q Consensus 286 ---------~-----------------------~-------~---~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l 323 (447)
| . . ....+...++.+++.++|.+++++++||+|||+++
T Consensus 549 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l 628 (742)
T TIGR01299 549 CTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRML 628 (742)
T ss_pred cchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 0 0 0 01234556667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 324 TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 324 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
+.++++++++++++.+..+.....++.++..++..+.+++.+++++|+||++.|++++|+++..++++++++|.+.+.+.
T Consensus 629 ~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~ 708 (742)
T TIGR01299 629 AGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFV 708 (742)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877776665554332222222223333444566788999999999999999999999999999999999988766
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 404 ANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
+. +...++++++++.+++++++++ +|||+|+.|
T Consensus 709 ~~-~~~~pf~i~a~~lll~~ll~~~-LPET~~~~l 741 (742)
T TIGR01299 709 GI-TKAAPILFASAALACGGLLALK-LPDTRGQVL 741 (742)
T ss_pred Hh-hhHHHHHHHHHHHHHHHHHHHh-CCCCccccc
Confidence 54 3445677777777777666655 489999875
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=377.61 Aligned_cols=399 Identities=21% Similarity=0.286 Sum_probs=278.9
Q ss_pred HHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc-----cCCCcchhHHHHHHHHHHhHhhhHHHHhhhh
Q 013219 12 EALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW-----NLSSTEESLITTSVFAGLVVGAYAWGLVADN 86 (447)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr 86 (447)
+++|+++++++|++++++++++.+.+++|...++.+.|.+.+++ ++++.+.+++.+...+|+++|++++|+++||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~ 82 (502)
T TIGR00887 3 EEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADK 82 (502)
T ss_pred chhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999999999999999999999999887642 3556677999999999999999999999999
Q ss_pred hCCc----------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhh
Q 013219 87 YGRS----------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTI 120 (447)
Q Consensus 87 ~GRr----------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~i 120 (447)
+||| .+....|+.|++|+++||+..++.+.++.+
T Consensus 83 ~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~ 162 (502)
T TIGR00887 83 LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGF 162 (502)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHH
Confidence 9999 011233567999999999999999999999
Q ss_pred hhHHHHHHHHHHc-----------------------CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChH-HHH
Q 013219 121 GSVSEAIGAWIIM-----------------------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTA-EAH 176 (447)
Q Consensus 121 G~l~~~~~~~~~~-----------------------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~-~a~ 176 (447)
|.++++.++..+. .+++||+++.++++|+++..+.++++|||||||..|||.| +++
T Consensus 163 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~ 242 (502)
T TIGR00887 163 GILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAA 242 (502)
T ss_pred HHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHH
Confidence 9988887765431 1247999999999999998888999999999999998875 577
Q ss_pred HHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcch----hhhhHHHHHHHH
Q 013219 177 RALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS----KLARTTILLWLL 252 (447)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~ 252 (447)
+.+++.++.+.+ + + .+|.++.+ ++ .+..+ ..+++++++ ++++.++.++..
T Consensus 243 ~~~~~~~~~~~~---~-~-----~~~~~~~~-------------~~-~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~ 296 (502)
T TIGR00887 243 SDMSAVLQVKIE---A-E-----PDEVEKAS-------------TA-VEVPK---ASWSDFFTHFFKWRHGKHLLGTAGS 296 (502)
T ss_pred HHHHHHhccccc---c-C-----cccccchh-------------cc-ccchh---hhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 777776532110 0 0 00000000 00 00001 135556643 233444445556
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCCh-------hhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHH
Q 013219 253 LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-------NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITI 325 (447)
Q Consensus 253 ~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~ 325 (447)
++.+.+.+|++..+.|.+....+.. ....... ......++..+..+++.+++++++||+|||+.+++
T Consensus 297 ~~~~~~~~y~~~~~~p~i~~~~G~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~ 370 (502)
T TIGR00887 297 WFLLDIAFYGVNLNQKVILSAIGYS------PPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370 (502)
T ss_pred HHHHHHHHHccccccHHHHHHHcCC------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHH
Confidence 6667778888766666443211100 0000000 11112334455677899999999999999999888
Q ss_pred HHHHHHHHHHHHHHhh---h-hhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHH
Q 013219 326 MFTLSCLFLLPLVTYQ---S-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 401 (447)
Q Consensus 326 ~~~~~~~~~~~l~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~ 401 (447)
+..++++++.++.... + ........+...+...+..++.|.+++|+||++.|+++.|+++.+++++++++|++.++
T Consensus 371 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~ 450 (502)
T TIGR00887 371 GFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLY 450 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 7766665544443321 1 11111111112222334456788999999999999999999999999999999999998
Q ss_pred HHhhc----------hhhHHHHHHHHHHHHHHHHHHhccccccCCCcccccc
Q 013219 402 LVANC----------HQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVD 443 (447)
Q Consensus 402 l~~~~----------~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~~~ 443 (447)
+.+.. +...++++++++++++.++. ++.|||||+++||+..
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 451 LAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501 (502)
T ss_pred hhccccccccccccccchHHHHHHHHHHHHHHHHh-eEeccCCCCCHHhhhC
Confidence 87632 22346778888888776654 5679999999998754
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=351.89 Aligned_cols=389 Identities=21% Similarity=0.322 Sum_probs=279.5
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhh--------cccccccccC--CCcc----hhHHHHHHHHHHhHhhhHHHHhh
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFV--------GPTVKSEWNL--SSTE----ESLITTSVFAGLVVGAYAWGLVA 84 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l--~~~~----~~~i~s~~~~G~~iG~l~~G~l~ 84 (447)
.++....+++.+.++-+-.+|....++.. +.+..++++. ++++ .+.+.|++++|+++|+++.|+++
T Consensus 5 ~t~~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la 84 (485)
T KOG0569|consen 5 LTRRLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLA 84 (485)
T ss_pred ccHHHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666656666665444433 2333445653 3332 57889999999999999999999
Q ss_pred hhhCCc-------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhh
Q 013219 85 DNYGRS-------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIG 121 (447)
Q Consensus 85 Dr~GRr-------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG 121 (447)
||+||| ....+.|+.|++|++.||.+..+.+.+..+|
T Consensus 85 ~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 85 DRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 999999 2344568899999999999999999999999
Q ss_pred hHHHHHHHH--HHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHh-cCChHHHHHHHHHHHHHcCCCCCCCccccc
Q 013219 122 SVSEAIGAW--IIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCL-KGRTAEAHRALEKIAQVNKTKLPNGKLVAR 198 (447)
Q Consensus 122 ~l~~~~~~~--~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~-~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 198 (447)
.+++..++. .+.+...|++.+.+..+|+++.++..+++|||||||.. |||.|||+|.++++++.++++. +.
T Consensus 165 ~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~---~~--- 238 (485)
T KOG0569|consen 165 ILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEA---EI--- 238 (485)
T ss_pred HHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchh---HH---
Confidence 999877653 34566789999999999999999999999999999988 8999999999999976432110 00
Q ss_pred cccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh-hhhHHHHHHHHHHH------HHHHHHHHHHHHHHhh
Q 013219 199 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLFG------NSFAYYAVVLLISELS 271 (447)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~------~~~~~y~~~~~~~~l~ 271 (447)
+++. ++.+ +++.++ ++..+++++++++ .|+...+.....++ +...+|++.++.+.=
T Consensus 239 -----e~~~------~e~~---~~~~~~--~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG- 301 (485)
T KOG0569|consen 239 -----EEML------REIE---EEELEK--KKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG- 301 (485)
T ss_pred -----HHHH------HHHH---Hhcccc--ccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC-
Confidence 0000 0000 000010 0112567777765 44444444333332 446677777765410
Q ss_pred cccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh----h-h-hhH
Q 013219 272 SLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----Q-S-NIL 345 (447)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~----~-~-~~~ 345 (447)
-..+...+.+ ...+...++..+++.+++||+|||++++.+..++.++.+.+... . . .+.
T Consensus 302 --------------~~~~~a~~an-~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~ 366 (485)
T KOG0569|consen 302 --------------FTPEEAQYAN-LGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWL 366 (485)
T ss_pred --------------CCHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 0112233444 44578899999999999999999999999888877766554321 1 1 121
Q ss_pred H---HHHHH-HHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 013219 346 T---TGLLF-GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVT 421 (447)
Q Consensus 346 ~---~~~~~-~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i 421 (447)
. .++++ ....+..|..+++|.+.+|+||++.|+++.+++.+++|+.+++..+.+|.+.+..+. ..+++|.+.+++
T Consensus 367 ~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~ 445 (485)
T KOG0569|consen 367 SYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAI 445 (485)
T ss_pred HHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHH
Confidence 1 12222 222334567789999999999999999999999999999999999999888777665 568889999999
Q ss_pred HHHHHHhccccccCCCccccccccC
Q 013219 422 SILSVMLIPFETKGQELSDTVDFTS 446 (447)
Q Consensus 422 ~~i~~~~~~pEtkg~~l~e~~~~~~ 446 (447)
+.++.++.+||||||+.+|+.++++
T Consensus 446 ~~i~~~~~lPETkgr~~~eI~~~~~ 470 (485)
T KOG0569|consen 446 FLIYLYRYLPETKGRTPYEIIEELE 470 (485)
T ss_pred HHHHHHHhCcccCCCCHHHHHHHHH
Confidence 9999999999999999999887654
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=326.91 Aligned_cols=397 Identities=21% Similarity=0.282 Sum_probs=291.8
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc-c-------CCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCC
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW-N-------LSSTEESLITTSVFAGLVVGAYAWGLVADNYGR 89 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GR 89 (447)
+.+++|.+.++++++|++.|+||.++++.+.|.+...| + +++.-.+.+..+.++|.++|++++|+++|++||
T Consensus 34 g~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 34 GLQWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred chhHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45999999999999999999999999999999887654 2 556678899999999999999999999999999
Q ss_pred c-----------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhh
Q 013219 90 S-----------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 122 (447)
Q Consensus 90 r-----------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 122 (447)
| +|+..+..+|.+..+.||...+.+..++.+|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 9 56667778999999999999999999999999
Q ss_pred HHHHHHHHHHc-------CCC--------CchHHHHhhhHHHHHHHHHhhcccCChHHHHhc-CChHHHHHHHHHHHHHc
Q 013219 123 VSEAIGAWIIM-------PRL--------DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLK-GRTAEAHRALEKIAQVN 186 (447)
Q Consensus 123 l~~~~~~~~~~-------~~~--------~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~-g~~~~a~~~l~~~~~~~ 186 (447)
+.+.+++..+. +.. -||+.+.++++|++..++.++.||||+||-... ++.+.|. ++.
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~-------~d~ 266 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA-------GDM 266 (538)
T ss_pred hhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh-------hcc
Confidence 88777766541 111 299999999999999999999999999998443 3344433 111
Q ss_pred CCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 013219 187 KTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL 266 (447)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 266 (447)
.++.+. +.++.+++ + .....+++..+.+..+|...+-++.+.....||...+.+|+..++
T Consensus 267 ~k~~~~---------~~~~~~~~-------~----~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~ 326 (538)
T KOG0252|consen 267 KKVLSV---------DIEAESTA-------E----SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLF 326 (538)
T ss_pred cccccc---------ccchhhcc-------c----cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccH
Confidence 111110 01110000 0 001111111222333443446677778888899999999999888
Q ss_pred HHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhh---
Q 013219 267 ISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--- 343 (447)
Q Consensus 267 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~--- 343 (447)
++.+.+...+.+..+ .....-.....+.++.....+||+.+...++|++|||...+.++++++++.+.+....++
T Consensus 327 ~s~I~~~ig~~~~~~--~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~ 404 (538)
T KOG0252|consen 327 QSVIFSAIGVIPSAN--TYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLEN 404 (538)
T ss_pred HHHHHHhhccCCCcc--hHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccc
Confidence 886654211111110 000000122356677777889999999999999999999999999999988887764331
Q ss_pred -hHHHH-HHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh-----hchhhHHHHHHH
Q 013219 344 -ILTTG-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA-----NCHQMTAVVLLV 416 (447)
Q Consensus 344 -~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~-----~~~~~~~~~~~~ 416 (447)
....+ ..+..++.+.|+.....++++|.||+++|+++.|++.+.|.++++++.+.+.++.+ ..+...++++++
T Consensus 405 ~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~ 484 (538)
T KOG0252|consen 405 TIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILA 484 (538)
T ss_pred cCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHH
Confidence 11111 12333455678888899999999999999999999999999999999999988877 555566788899
Q ss_pred HHHHHHHHHHHhccccccCCCccccccc
Q 013219 417 VVIVTSILSVMLIPFETKGQELSDTVDF 444 (447)
Q Consensus 417 ~~~~i~~i~~~~~~pEtkg~~l~e~~~~ 444 (447)
.+++++.++.+ +.||||||++||+.++
T Consensus 485 ~~~~~gi~~T~-l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 485 GCMLLGILFTL-LIPETKGKSLEEISNE 511 (538)
T ss_pred HHHHHhHheeE-EeecccccCHHHhcCh
Confidence 88888866554 4569999999998554
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=336.00 Aligned_cols=387 Identities=30% Similarity=0.525 Sum_probs=282.7
Q ss_pred ccHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHH--hhcccccccccCC---CcchhHHHHHHHHHHhHhhhHHHH
Q 013219 8 YTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILS--FVGPTVKSEWNLS---STEESLITTSVFAGLVVGAYAWGL 82 (447)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~---~~~~~~i~s~~~~G~~iG~l~~G~ 82 (447)
.+.++..+..+.++++++...+ +.....+..|....+ ...|++.+||+++ +.+.+++.+++++|.++|++++|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~ 149 (505)
T TIGR00898 71 FMVDQWANPSLLGCEPLKLSDL-GLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGY 149 (505)
T ss_pred ccccchhhhcccccccchhccc-CCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455566667778887765543 455555555544444 4568899999999 788999999999999999999999
Q ss_pred hhhhhCCc----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhh
Q 013219 83 VADNYGRS----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS 122 (447)
Q Consensus 83 l~Dr~GRr----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~ 122 (447)
++||+||| .+...+++.|+.|+++|++..++.+.++.+|.
T Consensus 150 l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~ 229 (505)
T TIGR00898 150 LSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGL 229 (505)
T ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHH
Confidence 99999999 12334467799999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccC
Q 013219 123 VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 202 (447)
Q Consensus 123 l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (447)
++++++++.+. +||+.+++.+++.++..+..+++||||||+..++|.+++++.+++.++.|+.+.+.+.. +.+
T Consensus 230 ~~~~~~~~~~~---~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~----~~~ 302 (505)
T TIGR00898 230 VLLPLVAYFIP---DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVL----SLS 302 (505)
T ss_pred HHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHH----hhh
Confidence 99888887653 49999999999988887777899999999999999999999999998877643211100 000
Q ss_pred CCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 013219 203 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 281 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 281 (447)
.+ +. .+.+++ ...++++++++ .++.++..+..++.+.+.||+...+.+.+.
T Consensus 303 -------~~--~~------~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 354 (505)
T TIGR00898 303 -------LE--KD------LSSSKK---QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLG---------- 354 (505)
T ss_pred -------hh--hh------hhhccC---CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccC----------
Confidence 00 00 000000 11455677544 555566666777777788887765544221
Q ss_pred cccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhh
Q 013219 282 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMG 359 (447)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~ 359 (447)
.+.+....+.++..+++.++.++++||+|||+.+..+.++++++++.+....+. .......+...++..+
T Consensus 355 --------~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (505)
T TIGR00898 355 --------GNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITS 426 (505)
T ss_pred --------CChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 123455566778889999999999999999999988877766665554443222 2222223333344455
Q ss_pred hhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCcc
Q 013219 360 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS 439 (447)
Q Consensus 360 ~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~ 439 (447)
.++..+.+.+|++|++.|+++.|+++.+++++++++|.+.+ + ...+...++++++++.+++.+..+ ++|||+|++++
T Consensus 427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~-~lpet~~~~l~ 503 (505)
T TIGR00898 427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTL-FLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHH-cCcCCCCCCCC
Confidence 56778899999999999999999999999999999999887 3 333445667778877777766654 46899999999
Q ss_pred cc
Q 013219 440 DT 441 (447)
Q Consensus 440 e~ 441 (447)
|+
T Consensus 504 ~t 505 (505)
T TIGR00898 504 ET 505 (505)
T ss_pred CC
Confidence 85
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-44 Score=361.94 Aligned_cols=377 Identities=29% Similarity=0.438 Sum_probs=260.8
Q ss_pred hhHHHHHHHHHHHHHhhccccc--ccccCC---------CcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------
Q 013219 31 GLGWVAEAMEIMILSFVGPTVK--SEWNLS---------STEESLITTSVFAGLVVGAYAWGLVADNYGRS--------- 90 (447)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~--~~~~l~---------~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------- 90 (447)
.++.+.+++|...++...+... ..+..+ +.+.+++.++.++|.++|++++|+++||+|||
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 4556889999988887765554 222222 22468999999999999999999999999999
Q ss_pred ----------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC--
Q 013219 91 ----------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-- 134 (447)
Q Consensus 91 ----------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~-- 134 (447)
.+....|+.|++|+++||++.++.+.++.+|.+++..+++....
T Consensus 86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 165 (451)
T PF00083_consen 86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS 165 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23345577899999999999999999999999988877765432
Q ss_pred -CCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCccc
Q 013219 135 -RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELV 213 (447)
Q Consensus 135 -~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (447)
.++||+.+.++++|+++..+..+++|||||||..|||.|||+|+++++++.+.++ .|.++..++.+
T Consensus 166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~-----------~~~~~~~~~~~-- 232 (451)
T PF00083_consen 166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIED-----------EEIEEIKAEKK-- 232 (451)
T ss_pred ccccccccccccccccccccccccccccccceeccccccccccccccccccccccc-----------ccccccccccc--
Confidence 2469999999999999988888999999999999999999999999865432110 11111110000
Q ss_pred ccccCCCCCCCcCCCchhHHHHhhcchh-hhhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcccccccCCCcccCCCCChh
Q 013219 214 HLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLFGNSFAYY-AVVLLISELSSLDTRCRSPLMFSHHPQDAN 291 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~y-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 291 (447)
+ .++.+ ..++++++++ ++++++..+.+.+.+.+.++ ....+.+.+... .+.. .+
T Consensus 233 -------~--~~~~~---~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~-----------~~~~-~~ 288 (451)
T PF00083_consen 233 -------E--SQESK---ASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFEN-----------AGIS-NS 288 (451)
T ss_pred -------c--ccccc---eeeeeccccccccccccccccccccccccccccccccccccccc-----------cccc-cc
Confidence 0 00000 2455566553 35555554444433333322 222222222110 0011 11
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--H---hhh----hhHHHHHHHHH-HHHHhhhh
Q 013219 292 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--T---YQS----NILTTGLLFGA-RMCVMGAF 361 (447)
Q Consensus 292 ~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~--~---~~~----~~~~~~~~~~~-~~~~~~~~ 361 (447)
....++..+..+++.+++.+++||+|||++++.+..+++++.+.+. . ..+ .....++.... ..+..+..
T Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~ 367 (451)
T PF00083_consen 289 -FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWG 367 (451)
T ss_pred -cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccccccccc
Confidence 2333455677788888889999999999998887776665554442 1 111 11111111111 12223445
Q ss_pred hhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCcccc
Q 013219 362 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441 (447)
Q Consensus 362 ~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~ 441 (447)
+..+.+++|+||+++|+++.|+++..+++++++.|.+.+++.+..+....+++++++++++.++.++++||||||++||+
T Consensus 368 ~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei 447 (451)
T PF00083_consen 368 PLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEI 447 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHH
Confidence 67889999999999999999999999999999999998877766554556888888889998999999999999999999
Q ss_pred cccc
Q 013219 442 VDFT 445 (447)
Q Consensus 442 ~~~~ 445 (447)
.+++
T Consensus 448 ~~~f 451 (451)
T PF00083_consen 448 QEMF 451 (451)
T ss_pred HhhC
Confidence 9875
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=314.33 Aligned_cols=390 Identities=24% Similarity=0.279 Sum_probs=271.2
Q ss_pred CchHHHHHHHHHhhHHHHHHHH--HHHHHhhcccccccc-----cCCC--cchhHHHHHHHHHHhHhhhHHHHhhhhhCC
Q 013219 19 FGKYQCFVLAYAGLGWVAEAME--IMILSFVGPTVKSEW-----NLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGR 89 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~l~~--~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GR 89 (447)
..+.+....+....+.+..++| ....+.+.+.++++. ..+. ++.+|+.++..+|.++|+++.|+++|++||
T Consensus 39 ~~~~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GR 118 (513)
T KOG0254|consen 39 ISPFVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGR 118 (513)
T ss_pred CceehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4566777777777777777776 333344444444432 1122 345899999999999999999999999999
Q ss_pred c----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 90 S----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 90 r----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
| ..+.+.|.+|++|++.||.+.+..+.++.+|.+++.+++
T Consensus 119 k~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~ 198 (513)
T KOG0254|consen 119 KKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCIN 198 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9 245567889999999999999999999999999987777
Q ss_pred HHHcCC-CCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCC
Q 013219 130 WIIMPR-LDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERA 208 (447)
Q Consensus 130 ~~~~~~-~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (447)
+...+. .+||+++.+..+|+++..+..+++|||||||.++||.++|++.++++++.+..+ .+.|.++.+
T Consensus 199 ~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~---------~~~~~~~~~- 268 (513)
T KOG0254|consen 199 YGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPED---------VEVELELLK- 268 (513)
T ss_pred hhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcc---------hHHHHHHHH-
Confidence 665332 589999999999999998889999999999999999999999999997632110 011111111
Q ss_pred CCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHH------HHHHHHHHHHHHHHhhcccccccCCCc
Q 013219 209 PPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFG------NSFAYYAVVLLISELSSLDTRCRSPLM 282 (447)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------~~~~~y~~~~~~~~l~~~~~~~~~~~~ 282 (447)
. .... +....+.+ ..+.++++++.+|+......+... +...||...++...-
T Consensus 269 -~---~~~~---~~~~~~~~---~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g------------ 326 (513)
T KOG0254|consen 269 -I---KLLV---EAEVAEGK---ASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAG------------ 326 (513)
T ss_pred -H---HHHH---hhhccccc---ccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcC------------
Confidence 0 0000 00000000 134556665566666654443332 334456555543310
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--h--h--------hhHHHHHH
Q 013219 283 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q--S--------NILTTGLL 350 (447)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~--~--------~~~~~~~~ 350 (447)
...+. ....++.++.++++.+++.+++||+|||++++.+..++.+++++++.. . . .+...+..
T Consensus 327 ---~~~~~--~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 327 ---LKSDT--FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred ---CCCch--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 01111 345567788889999999999999999999999888777766555431 1 0 11112221
Q ss_pred -HHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HHHh
Q 013219 351 -FGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL-SVML 428 (447)
Q Consensus 351 -~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i-~~~~ 428 (447)
+....+..+..+++|.+.+|+||.++|+++.+++..++|+.+++....++.+.+..+....+.+|+..+.+..+ ++++
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~ 481 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFF 481 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheE
Confidence 12223344555789999999999999999999999999999988888887666554323457777777777777 7889
Q ss_pred ccccccCCCcccccccc
Q 013219 429 IPFETKGQELSDTVDFT 445 (447)
Q Consensus 429 ~~pEtkg~~l~e~~~~~ 445 (447)
+.|||||+++||+.+.+
T Consensus 482 ~~pETkg~sleei~~~~ 498 (513)
T KOG0254|consen 482 FVPETKGLTLEEINELF 498 (513)
T ss_pred EcccCCCCcHHHHHHHH
Confidence 99999999999987643
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=307.08 Aligned_cols=387 Identities=19% Similarity=0.213 Sum_probs=260.8
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc--------cCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEW--------NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr 90 (447)
-+++|+++++.+.++.+.+++|...++...|.+++++ ++++.+.+++.+++++|.++|++++|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr 85 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRR 85 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 4678999999999999999999999999988888776 78889999999999999999999999999999999
Q ss_pred c----------------------------------------------------hhhhhhhhcccCCCCchhHHHHHHHHH
Q 013219 91 G----------------------------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFW 118 (447)
Q Consensus 91 ~----------------------------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~ 118 (447)
. +...+++.|++|+++||+..++.+.+.
T Consensus 86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~ 165 (479)
T PRK10077 86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI 165 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence 0 011235679999999999999999999
Q ss_pred hhhhHHHHHHHHHHc--------CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCC
Q 013219 119 TIGSVSEAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKL 190 (447)
Q Consensus 119 ~iG~l~~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~ 190 (447)
.+|.+++++++..+. ...+||++|++.+++.++..+..+++||||+|+..++|.|++++.+++..+.+..
T Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~-- 243 (479)
T PRK10077 166 IFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLA-- 243 (479)
T ss_pred HHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhH--
Confidence 999998877665432 3468999999999998888777888999999999899999988777765321100
Q ss_pred CCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHH--HHHHHHHHHHHHHHHHHHH
Q 013219 191 PNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILL--WLLLFGNSFAYYAVVLLIS 268 (447)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~y~~~~~~~ 268 (447)
+.+.++.+ ...+ . +.. ..+..+. .....+.. ....+.+...++....+.|
T Consensus 244 ---------~~~~~~~~------~~~~------~-~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 295 (479)
T PRK10077 244 ---------TQALQEIK------HSLD------H-GRK----TGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAP 295 (479)
T ss_pred ---------HHHHHHHH------HHHH------H-hhh----hhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 00000000 0000 0 000 0000111 00011111 1111122222333333334
Q ss_pred HhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--hh-hh-
Q 013219 269 ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QS-NI- 344 (447)
Q Consensus 269 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~~-~~- 344 (447)
.+... .+.+...........++..+++.+++++++||+|||+.++.+..++.+..+.+... .+ ..
T Consensus 296 ~i~~~-----------~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~ 364 (479)
T PRK10077 296 EIFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI 364 (479)
T ss_pred HHHHH-----------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH
Confidence 33211 01111112233445567788899999999999999999988777666555443321 11 11
Q ss_pred HHHHHHHHHHHHH-hhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH------hhchhhHHHHHHHH
Q 013219 345 LTTGLLFGARMCV-MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV------ANCHQMTAVVLLVV 417 (447)
Q Consensus 345 ~~~~~~~~~~~~~-~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~------~~~~~~~~~~~~~~ 417 (447)
.....++...... .+..+..+.+.+|++|++.|+++.|+.++.+++++++++.++|.+. +..+....++++++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 444 (479)
T PRK10077 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC 444 (479)
T ss_pred HHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHH
Confidence 1111111111111 1122457899999999999999999999999999999988887554 23344456777888
Q ss_pred HHHHHHHHHHhccccccCCCccccccccC
Q 013219 418 VIVTSILSVMLIPFETKGQELSDTVDFTS 446 (447)
Q Consensus 418 ~~~i~~i~~~~~~pEtkg~~l~e~~~~~~ 446 (447)
+++++.++.+++.||||++++||..++.+
T Consensus 445 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 473 (479)
T PRK10077 445 MGVLAALFMWKFVPETKGKTLEEMEALWE 473 (479)
T ss_pred HHHHHHHHHHhccccCCCCCHHHHHHHHh
Confidence 88888888888889999999998766543
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=285.28 Aligned_cols=359 Identities=17% Similarity=0.154 Sum_probs=231.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcc-hhHH-----HHHHHHHHhHhhhHHHHhhhhhCCc-------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-ESLI-----TTSVFAGLVVGAYAWGLVADNYGRS------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i-----~s~~~~G~~iG~l~~G~l~Dr~GRr------- 90 (447)
+++.+.+.+++++|++|...+++..|.+.++++.+.++ .+++ .++.++|+.+|++++|+++||+|||
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 56777888999999999999999999999998755433 2222 4778899999999999999999999
Q ss_pred -----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 91 -----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 91 -----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
.+....++.|++|+++||++.++.+.+..+|.++++.+.
T Consensus 95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~ 174 (490)
T PRK10642 95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV 174 (490)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 011223567999999999999999999888888776554
Q ss_pred HHHc--------CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcccccccc
Q 013219 130 WIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201 (447)
Q Consensus 130 ~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (447)
..+. .+++||++|+++++++++.++.+.++||||+|+..+++.++.. .+
T Consensus 175 ~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~----------~~------------- 231 (490)
T PRK10642 175 VLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD----------RE------------- 231 (490)
T ss_pred HHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc----------cc-------------
Confidence 3321 3679999999988887777777788999999974432211100 00
Q ss_pred CCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 013219 202 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 281 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 281 (447)
... + +++ ..+++++++ +++..+..+...+...+.+|+...+.|......
T Consensus 232 ~~~----------------~----~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------- 280 (490)
T PRK10642 232 GLQ----------------D----GPK---VSFKEIATK-HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHN------- 280 (490)
T ss_pred ccc----------------c----ccc---CCHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 000 0 000 023344543 334444444444555667777776666433110
Q ss_pred cccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHH-hhh-hhHHHHHHHHHHHHHh
Q 013219 282 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVT-YQS-NILTTGLLFGARMCVM 358 (447)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~-l~~-~~~-~~~~~~~~~~~~~~~~ 358 (447)
.+.+............++.+++.++.++++||+|||+.+..+.++..+..+. ... ... .....+..+...++..
T Consensus 281 ---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 281 ---LHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILN 357 (490)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 0111111122233445667788889999999999999877665433322211 111 111 1111111122222222
Q ss_pred hhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 359 GAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 359 ~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
...+....+.+|++|++.|+++.|+.+.++++++.++|.+.+++.+..+ ...++++..+.++++.+..++ .|||+++.
T Consensus 358 ~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~ 436 (490)
T PRK10642 358 CFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRP 436 (490)
T ss_pred HHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCC
Confidence 3344566778899999999999999888899989999999988766433 233444555556666555544 58998877
Q ss_pred ccc
Q 013219 438 LSD 440 (447)
Q Consensus 438 l~e 440 (447)
+++
T Consensus 437 ~~~ 439 (490)
T PRK10642 437 LKG 439 (490)
T ss_pred CCC
Confidence 654
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=289.73 Aligned_cols=347 Identities=30% Similarity=0.419 Sum_probs=252.6
Q ss_pred cchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------------------------------chhhhhhhh
Q 013219 60 TEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------------------------------GHVFLSWFL 99 (447)
Q Consensus 60 ~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------------------------------~~~~~~~~~ 99 (447)
....+.++++++|.++|++++|+++||+||| ..+..++++
T Consensus 118 ~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~ 197 (521)
T KOG0255|consen 118 TLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVA 197 (521)
T ss_pred hHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhe
Confidence 4457889999999999999999999999999 233445678
Q ss_pred cccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHH
Q 013219 100 EFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRAL 179 (447)
Q Consensus 100 E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l 179 (447)
|+.++++|+...++...++..|.+..+..+++. .+||+.+++..+|+++.++..++.||||||+..+||.++|.+.+
T Consensus 198 E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~---~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l 274 (521)
T KOG0255|consen 198 EIVSPKQRGLALTLGGFFFVGGLMLPAGAAYIT---RDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKIL 274 (521)
T ss_pred eecCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHH
Confidence 999999999999997777777777766667765 38999999999999988877777789999999999999999999
Q ss_pred HHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh-hhhHHHHHHHHHHHHHH
Q 013219 180 EKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK-LARTTILLWLLLFGNSF 258 (447)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 258 (447)
+++++.|+.+...++.. +.+. . .+ +......++...+.++++.+ .+++++.++..++....
T Consensus 275 ~~~a~~n~~~~~~~~~~---~~~~-~--------~~------~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 336 (521)
T KOG0255|consen 275 KKIAKLNGRKLSVKELL---RLEL-L--------LR------PLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFVFSL 336 (521)
T ss_pred HHHHhhcCCCCCcHHHH---HHHH-H--------hh------HhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHHHhH
Confidence 99998874322111100 0000 0 00 00000000111355666554 77888888888888889
Q ss_pred HHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH
Q 013219 259 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV 338 (447)
Q Consensus 259 ~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~ 338 (447)
.||+..+....+ ..+.+.+..+......++....+...|++|||.....+.....+.++...
T Consensus 337 ~y~gl~~~~~~l------------------g~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~ 398 (521)
T KOG0255|consen 337 VYYGLSLNVSGL------------------GGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG 398 (521)
T ss_pred HHHhhhhhhhhc------------------CchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 999887654422 13456666677778899999999999999999999888877776665554
Q ss_pred Hhh--hh-hHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHH
Q 013219 339 TYQ--SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLL 415 (447)
Q Consensus 339 ~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 415 (447)
... .. ....+......++...++...+.+.+|++||.+|+++.+.++..++++++++|.+...... ......+.++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~-~~~~~~~~~~ 477 (521)
T KOG0255|consen 399 WLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ-MFPLLGLILF 477 (521)
T ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccchHHHH
Confidence 422 11 1233333344444455566679999999999999999999999999999999987743322 2222333346
Q ss_pred HHHHHHHHHHHHhccccccCCCccccccccC
Q 013219 416 VVVIVTSILSVMLIPFETKGQELSDTVDFTS 446 (447)
Q Consensus 416 ~~~~~i~~i~~~~~~pEtkg~~l~e~~~~~~ 446 (447)
+....+...++.++.|||+++++.|+..|.+
T Consensus 478 ~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 478 GWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 7777777777767889999999999887653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=270.65 Aligned_cols=393 Identities=19% Similarity=0.226 Sum_probs=255.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCC--------CcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--
Q 013219 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS--------STEESLITTSVFAGLVVGAYAWGLVADNYGRS-- 90 (447)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-- 90 (447)
+..+..++++.++.+...+|...++...|.+..+++.+ ..+.+++.+++.++..++++++|+++||+|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~ 103 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS 103 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence 44466666777788889999999998888888887766 78899999999999999999999999999999
Q ss_pred -----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 91 -----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 91 -----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
.+....++.|++|+++|++..++.+.+..+|.++++.++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 112234567999999999999999999999999998887
Q ss_pred ---HHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCC
Q 013219 130 ---WIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGE 206 (447)
Q Consensus 130 ---~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
.......+||++|++.+++.++..+..+++||+|+++..+++.+++++..++..+.+.++ .+.. .+.+..
T Consensus 184 ~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~~~ 256 (481)
T TIGR00879 184 SGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGED---KELL----DELELI 256 (481)
T ss_pred HHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCc---HHHH----HHHHHH
Confidence 444456799999999888888877778889999999988888887776655443211100 0000 000000
Q ss_pred CCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCC
Q 013219 207 RAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHH 286 (447)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~ 286 (447)
+.....+ .+. .+..+....+.+++..++..+.....++.+...++....+.+.+.... +
T Consensus 257 ----~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------g 315 (481)
T TIGR00879 257 ----DIKRSIE-----KRS-VQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENA-----------G 315 (481)
T ss_pred ----HHHHHHH-----Hhh-ccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHc-----------C
Confidence 0000000 000 001122222222221112222222222222222222222223221110 1
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH---h-hh------hhHHHHH-HHHHHH
Q 013219 287 PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---Y-QS------NILTTGL-LFGARM 355 (447)
Q Consensus 287 ~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~---~-~~------~~~~~~~-~~~~~~ 355 (447)
.+.........+..+..+++.++++++.||+|||+.+..+..+..+.++.+.. . .. ....... .+...+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (481)
T TIGR00879 316 VSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAF 395 (481)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHH
Confidence 11111223344556777889999999999999999888776655554443331 1 11 1111111 111111
Q ss_pred HHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 356 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 356 ~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+..+..+..+.+.+|.+|++.|+++.|+.+...+++++++|.+.+.+.+..+....++++++++++++++.+++.||+|+
T Consensus 396 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 396 FAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred HHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCC
Confidence 22222345678889999999999999999999999999999999887776555556777888888888888888899999
Q ss_pred CCcccc
Q 013219 436 QELSDT 441 (447)
Q Consensus 436 ~~l~e~ 441 (447)
++++|+
T Consensus 476 ~~~~~~ 481 (481)
T TIGR00879 476 RTLEEI 481 (481)
T ss_pred CChhhC
Confidence 988763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-30 Score=258.24 Aligned_cols=347 Identities=17% Similarity=0.205 Sum_probs=215.3
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccc---CCCcchhHHH---HHHHHHHhHhhhHHHHhhhhhCCc--
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWN---LSSTEESLIT---TSVFAGLVVGAYAWGLVADNYGRS-- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~i~---s~~~~G~~iG~l~~G~l~Dr~GRr-- 90 (447)
.++.+++.++.+.+++++|++|+..+++..|.+.++++ .++.+.+.+. ++.+++..+|++++|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~ 95 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKS 95 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 44566777778889999999999999999999999985 4444443333 445556669999999999999999
Q ss_pred ----------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHH
Q 013219 91 ----------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 124 (447)
Q Consensus 91 ----------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~ 124 (447)
.+...+++.|+.|+++||+..+..+.+...|.++
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~ 175 (432)
T PRK10406 96 MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLL 175 (432)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Confidence 0112245679999999999999999888888887
Q ss_pred HHHHHHHHc--------CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccc
Q 013219 125 EAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 196 (447)
Q Consensus 125 ~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 196 (447)
+.++...+. +.++||.+|+++++++++..+.+..+||||++... +.+ +
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~---------------~~~-~-------- 231 (432)
T PRK10406 176 ALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR---------------ALK-E-------- 231 (432)
T ss_pred HHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh---------------hhc-c--------
Confidence 766544322 25799999999999998887778889999875210 000 0
Q ss_pred cccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013219 197 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 276 (447)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 276 (447)
+ .+++++++++ +....++...+.....+|+...|.|......
T Consensus 232 -------------------------------~---~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~-- 273 (432)
T PRK10406 232 -------------------------------A---GSLKGLWRNR--RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNT-- 273 (432)
T ss_pred -------------------------------c---ccHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 0 0123344322 2222222333334556666666666432110
Q ss_pred ccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH--Hhh--hhhHHHHHHHH
Q 013219 277 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV--TYQ--SNILTTGLLFG 352 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~--~~~--~~~~~~~~~~~ 352 (447)
.+.+..+......+..+...++..+.++++||+|||+.+.++.+++.+....+. ... +......++..
T Consensus 274 --------~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 274 --------AGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred --------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 111111111122233445566677889999999999887665554333322111 111 11111111211
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHhcc
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~i~~~~~~ 430 (447)
..++.....+..+.+.+|+||++.|+++.|+++.++++ .+...|.+...+ +..+.+. .+++.+.+.+++.+..++
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~-- 422 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLM-- 422 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHH--
Confidence 21111122245678899999999999999999999886 355577766644 4434333 334445555666555554
Q ss_pred ccccCCCc
Q 013219 431 FETKGQEL 438 (447)
Q Consensus 431 pEtkg~~l 438 (447)
.|++||+.
T Consensus 423 l~~~~~~~ 430 (432)
T PRK10406 423 LHRKGKGM 430 (432)
T ss_pred hhhccccc
Confidence 36677764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-29 Score=254.93 Aligned_cols=348 Identities=16% Similarity=0.122 Sum_probs=218.1
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhccc-ccccc--cCCCcchhHHH-----HHHHHHHhHhhhHHHHhhhhhCCc--
Q 013219 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPT-VKSEW--NLSSTEESLIT-----TSVFAGLVVGAYAWGLVADNYGRS-- 90 (447)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~l~~~~~~~i~-----s~~~~G~~iG~l~~G~l~Dr~GRr-- 90 (447)
.+++++...+.+++++|++|...+++..|. +.+++ ++++. .+++. ++.+++..+|+++.|+++||+|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~ 96 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM 96 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH
Confidence 566778888889999999999999988774 44555 56665 56554 356677889999999999999999
Q ss_pred ----------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHH
Q 013219 91 ----------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 124 (447)
Q Consensus 91 ----------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~ 124 (447)
.+....++.|+.|+|+||+..+..+.++.+|.++
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l 176 (438)
T PRK09952 97 LMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLL 176 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 0111235679999999999999999999999988
Q ss_pred HHHHHHHHc--------CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccc
Q 013219 125 EAIGAWIIM--------PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLV 196 (447)
Q Consensus 125 ~~~~~~~~~--------~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 196 (447)
+..+...+. .+++||.+|++++++.++....+..+||||+|...+++.++.+
T Consensus 177 ~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~~~-------------------- 236 (438)
T PRK09952 177 STGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAAAK-------------------- 236 (438)
T ss_pred HHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccccc--------------------
Confidence 766544332 2579999999999988777777778999999853321110000
Q ss_pred cccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 013219 197 ARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTR 276 (447)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 276 (447)
+ +.. ..+.+++++ +....+....+...+.+|....+.+.....
T Consensus 237 --------~---------------------~~~---~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~--- 279 (438)
T PRK09952 237 --------K---------------------RIP---VIEALLRHP--GAFLKIIALRLCELLTMYIVTAFALNYSTQ--- 279 (438)
T ss_pred --------c---------------------cCC---HHHHHHHch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 0 000 011122221 222222223334445555554444432110
Q ss_pred ccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH--hh-hhhHH-HHHHHH
Q 013219 277 CRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQ-SNILT-TGLLFG 352 (447)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~--~~-~~~~~-~~~~~~ 352 (447)
..+.+.........+.+...+++..+.++++||+|||+.+..+.++..+..+.... .. +.... ....+.
T Consensus 280 -------~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 280 -------NLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred -------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 00111111111123345566778889999999999999887766554433322211 11 11111 111222
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHh-HhHhHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHhc
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~-i~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
..++.....+..+.+.+|++|++.|+++.|+++..++ +++.++|.+.+++.+..+ ....+.+.+++.+++.+..+.
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~- 431 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL- 431 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-
Confidence 2222223345678899999999999999999888876 789999999988876432 223445555566666655544
Q ss_pred ccccc
Q 013219 430 PFETK 434 (447)
Q Consensus 430 ~pEtk 434 (447)
.+||+
T Consensus 432 ~~~~~ 436 (438)
T PRK09952 432 MKDNQ 436 (438)
T ss_pred ccccc
Confidence 46654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7e-29 Score=248.65 Aligned_cols=363 Identities=18% Similarity=0.218 Sum_probs=236.0
Q ss_pred HHhcC-CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--
Q 013219 14 LTHVG-FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-- 90 (447)
Q Consensus 14 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-- 90 (447)
+++.+ .+++|++..+.+.++++.+++|.+..++..|.+++++|+++.+.+++.+++.+|..+++++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~ 85 (426)
T PRK12307 6 FPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL 85 (426)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 34443 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Q 013219 91 --------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 132 (447)
Q Consensus 91 --------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~ 132 (447)
.+....++.|+.|+++|++..++.+.++.+|.++++.+...+
T Consensus 86 l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l 165 (426)
T PRK12307 86 MMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSF 165 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHH
Confidence 122334567999999999999999999999999988776666
Q ss_pred cCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 133 MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 133 ~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
....+||+.+++..++.++........||+++|...+.+ + .+ ++ .+
T Consensus 166 ~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~--~----------~~-~~--------------~~------- 211 (426)
T PRK12307 166 AEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS--G----------KG-KH--------------SQ------- 211 (426)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh--c----------cc-cc--------------cc-------
Confidence 667899999998877766655555667898876421100 0 00 00 00
Q ss_pred cccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 292 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
. . .+.....++++++++..+....+....+.....++.+..+.+..... .+.+....
T Consensus 212 ---------~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~~~~ 268 (426)
T PRK12307 212 ---------S-A--WSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-----------EGFDTGVV 268 (426)
T ss_pred ---------c-c--hhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHH
Confidence 0 0 00001134556655544433333322222222222233333322210 01111111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh-hhhH-HHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNIL-TTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
.....+..++.+++.++.+++.||+|||+.+..+..++.+.++.+.... .... ...+++...+...+..+..+.+..|
T Consensus 269 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (426)
T PRK12307 269 SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYD 348 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2223345667888999999999999999988877766555443333221 1111 1111222222222333455677899
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHhccccc
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.+|++.|+++.|+.+..+++++.++|.+.+++.+..+... .++..+..+.++.....+..||+
T Consensus 349 ~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 349 YFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred hCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 9999999999999999999999999999988776655322 23333333334333333344565
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=245.34 Aligned_cols=347 Identities=22% Similarity=0.282 Sum_probs=234.9
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------- 90 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------- 90 (447)
.-+|++|.+++++....+.+++|....+...|.+.+++++++++.+++.++..+|..+++++.|+++||+|||
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 87 (406)
T PRK11551 8 ASSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV 87 (406)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCC
Q 013219 91 ---------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD 137 (447)
Q Consensus 91 ---------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~ 137 (447)
.+....++.|+.|+++||+..++.+.+..+|..+++.++..+....+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 167 (406)
T PRK11551 88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA 167 (406)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 12233456799999999999999999999999999888777667789
Q ss_pred chHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccc
Q 013219 138 WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216 (447)
Q Consensus 138 WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
||..+++.++..++. .+...++||+|++...+++.++.++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 208 (406)
T PRK11551 168 WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP--------------------------------------- 208 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh---------------------------------------
Confidence 999999877655554 4455678999986422111000000
Q ss_pred cCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
..+.+++++..++....+...+.....++....+.|.+.... +.+........
T Consensus 209 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------g~s~~~~~~~~ 261 (406)
T PRK11551 209 ----------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQ-----------GLSRSQAGLVQ 261 (406)
T ss_pred ----------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------CCChhhhhHHH
Confidence 001111111112222233333333344444444444332110 11111112223
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+..+++.++.+++.||+|||+.+..+.+...+.+..+....+.....+..+...++..+..+..+.+..|.+|++.
T Consensus 262 ~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~ 341 (406)
T PRK11551 262 IAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV 341 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh
Confidence 44567788899999999999999998877665544444333332222222222222222333445667889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHH-HHHHHHHHHHHHHHHHhcc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTA-VVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~i~~i~~~~~~ 430 (447)
|+++.|+.+.++++++.++|.+.+++.+..+.... ++..+.+.+++.+..+...
T Consensus 342 ~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 342 RGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred hhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988765433332 3334444455555544443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=244.20 Aligned_cols=343 Identities=16% Similarity=0.180 Sum_probs=220.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------
Q 013219 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------- 90 (447)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------- 90 (447)
+.+|++.+.++++++.+++|+..+++..|.+++|++++..+.+++.+++++|+.+++++.|+++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 4578888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc------C
Q 013219 91 ------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM------P 134 (447)
Q Consensus 91 ------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~------~ 134 (447)
.+....++.|++|+++||+..++++.+..+|..+++.++..+. +
T Consensus 84 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 163 (412)
T TIGR02332 84 GIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMA 163 (412)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 1223346789999999999999999999999999888766543 2
Q ss_pred CCCchHHHHhhhHHHHHH-HHHhhcccCChH---HHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCC
Q 013219 135 RLDWRWLLGLSSIPSFIL-LAFLGFQPESPR---YLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 210 (447)
Q Consensus 135 ~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~---~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
..+||+.|.+.++++++. .+..+++||+|+ |+. +++++..++..+.+.. +.++.+.
T Consensus 164 ~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~-----~~~~~~~~~~~~~~~~-------------~~~~~~~-- 223 (412)
T TIGR02332 164 LKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD-----EEDKKALKEMIDNDQL-------------TLEQPEG-- 223 (412)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC-----HHHHHHHHHHHHhccc-------------ccccccc--
Confidence 369999999998888765 445677899995 331 2222222111110000 0000000
Q ss_pred cccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCCh
Q 013219 211 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 290 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 290 (447)
. .+. ++....+.++++++++ .+......++....++++..|.|.+..... .+.+..
T Consensus 224 ---~-------~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~---------~~~s~~ 279 (412)
T TIGR02332 224 ---A-------FAH-AAMPQRSMLREIFTPA----IMLYTLAYFCLTNTLSAINIWTPQILQSFN---------QGSSNI 279 (412)
T ss_pred ---c-------ccc-ccccHHHHHHHhcChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCcHH
Confidence 0 000 0000112344444322 223333444455556666666664432100 001111
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcc
Q 013219 291 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI-TIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 369 (447)
Q Consensus 291 ~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (447)
.......+..++.++|.++.++++||++||+.. ........+.+.......+.......+....++.....+..+..+.
T Consensus 280 ~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 359 (412)
T TIGR02332 280 MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPD 359 (412)
T ss_pred HhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcc
Confidence 112223455677888999999999999977643 3333332222222111212111111111111112222234567778
Q ss_pred ccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch
Q 013219 370 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 370 ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~ 407 (447)
|.+|++.|+++.|+.+..++++++++|.+.+.+.+..+
T Consensus 360 ~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 360 QSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred cccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 99999999999999999999999999999987766544
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=240.29 Aligned_cols=313 Identities=14% Similarity=0.098 Sum_probs=211.7
Q ss_pred HHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------------------
Q 013219 41 IMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------- 91 (447)
Q Consensus 41 ~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------- 91 (447)
...+++..|.+++|+++|+.+.|++.+++++|+.+++++.|+++||+|||.
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R 86 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQ 86 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 355677889999999999999999999999999999999999999999990
Q ss_pred ----------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHH-HHHHhhccc
Q 013219 92 ----------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI-LLAFLGFQP 160 (447)
Q Consensus 92 ----------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i-~~~~~~~lp 160 (447)
........|+.|+++|+++.++.+.+..+|.+++++++..+.++.+||..|.+.++++++ ..+.++++|
T Consensus 87 ~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp 166 (368)
T TIGR00903 87 LLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALP 166 (368)
T ss_pred HHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111233579999999999999999999999999998888877788999999986666555 455677889
Q ss_pred CChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcch
Q 013219 161 ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSS 240 (447)
Q Consensus 161 ESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (447)
|+|++. ++..+.+ +..+++++++++
T Consensus 167 ~~p~~~---~~~~~~~----------------------------------------------------~~~~~~~~ll~~ 191 (368)
T TIGR00903 167 ALPFQA---AEGFGFK----------------------------------------------------DAVKEFGALAGR 191 (368)
T ss_pred CCCCCC---CCCcchH----------------------------------------------------HHHHHHHHHHcC
Confidence 999752 1000000 000124445554
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChh
Q 013219 241 KLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 320 (447)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr 320 (447)
+. .+.++...++....+|++..|.|.+.... +.+ ... .....+..+.+.+..+++.||..||
T Consensus 192 ~~---~~~~~~~~~~~~~~~~~~~~wlp~~L~~~-----------g~s-~~~---~~~~~l~~~~g~~g~~~~~d~~~r~ 253 (368)
T TIGR00903 192 KD---LWIIGAILGFGVALFDNLAIWLEAALRPA-----------GLE-DIA---GDAVALAILAGLIGVAVIPDRVARA 253 (368)
T ss_pred hh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------CCC-hHH---HHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 33 34444556666777788878887654211 111 111 1122333445556668888887653
Q ss_pred ---HHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHH
Q 013219 321 ---LSITI-MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 396 (447)
Q Consensus 321 ---~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~ 396 (447)
+.... ...++.+....+....+......++....++..+..+..+.+++|++|++.|+++.|+.+..++++++++|
T Consensus 254 ~~r~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~ 333 (368)
T TIGR00903 254 GLRSIYIRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALA 333 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHH
Confidence 33222 23332333222222222222222333333444455566889999999999999999999999999999999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 013219 397 LVAVALVANCHQMTAVVLLVVVIVTSILSVML 428 (447)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 428 (447)
.+.+.+.. +....+.++++..+++.+.+.+
T Consensus 334 ~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~ 363 (368)
T TIGR00903 334 LAAMLFIS--SAEAYFTFLAILITIAFAIALL 363 (368)
T ss_pred HHHHHHhc--CHHHHHHHHHHHHHHHHHHHHh
Confidence 98876663 3345577788888888777653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-28 Score=239.52 Aligned_cols=344 Identities=19% Similarity=0.246 Sum_probs=224.1
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
++++||+....+.++++.+++|....+...|.+++++++++.+.+++.++..++..+++++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 85 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIV 85 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCC-
Q 013219 91 --------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD- 137 (447)
Q Consensus 91 --------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~- 137 (447)
.+...+++.|+.|+++|++..++.+.+..+|..+++.++..+....+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 165 (405)
T TIGR00891 86 LFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGD 165 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 12233466799999999999999999999999998887766554444
Q ss_pred -chHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccc
Q 013219 138 -WRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216 (447)
Q Consensus 138 -WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
||+.+.+.+++.++..+....+||+|++...+++.++.++..++..+... ...+ .
T Consensus 166 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~---------~- 221 (405)
T TIGR00891 166 GWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEH--------------RIAN---------I- 221 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccch--------------hhhh---------h-
Confidence 99999998888888777778899999876443322222222222111000 0000 0
Q ss_pred cCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
. ++.....+... ++.+..............+..++...+.+..... ..+.+........
T Consensus 222 -------~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~s~~~~~~~~ 280 (405)
T TIGR00891 222 -------V---MTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKA----------DLGLSPHTVANIV 280 (405)
T ss_pred -------h---hhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH----------HhCCCHHHHHHHH
Confidence 0 00000011000 1111111111111111222222222222211100 0011111112223
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV-TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.+..+..+++.++.+++.||+|||+.+..+...+.+....+. ...+........+...++..+.++....+.+|.+|++
T Consensus 281 ~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (405)
T TIGR00891 281 VFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTD 360 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcc
Confidence 445677888999999999999999988776665433322222 2222221122112222233344456677889999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~ 407 (447)
.|+++.|+.+.++.+++.++|.+.+++.+..+
T Consensus 361 ~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 361 QRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998877655
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=232.71 Aligned_cols=354 Identities=24% Similarity=0.358 Sum_probs=237.7
Q ss_pred HHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc
Q 013219 11 DEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS 90 (447)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr 90 (447)
.+..++....+++++..+.+.+.++.++++....++..|.+.+++|+++.+.+++.++..++..+++++.|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~ 82 (398)
T TIGR00895 3 QNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK 82 (398)
T ss_pred hhHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH
Confidence 44556666788889888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHH
Q 013219 91 ----------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 130 (447)
Q Consensus 91 ----------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~ 130 (447)
.+...+++.|+.|+++|++..++.+.+..+|..+++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~ 162 (398)
T TIGR00895 83 RVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHH
Confidence 1233456779999999999999999999999999888877
Q ss_pred HHcCCCCchHHHHhhhH-HHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCC
Q 013219 131 IIMPRLDWRWLLGLSSI-PSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAP 209 (447)
Q Consensus 131 ~~~~~~~WR~~~~~~~i-~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
.+....+||..+++.++ +.+...+...++||+|++...+ +.+++++..++....+..+ .+.+..+
T Consensus 163 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~---- 228 (398)
T TIGR00895 163 WLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAE---------AQSALPE---- 228 (398)
T ss_pred HHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccc---------ccccccc----
Confidence 66677899999998854 4444556677889999987665 5555555555443221100 0000000
Q ss_pred CcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCC
Q 013219 210 PELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQD 289 (447)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 289 (447)
++.++ +......+.+++++..++...++...+.....++....+.+.+... .+.+.
T Consensus 229 ------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~~~ 284 (398)
T TIGR00895 229 ------------QKATQ-GTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVE-----------LGFSL 284 (398)
T ss_pred ------------ccccc-chhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCH
Confidence 00000 0001123334445555555555555555555555555555532211 01111
Q ss_pred hhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcc
Q 013219 290 ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA 369 (447)
Q Consensus 290 ~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (447)
........+..+..+++.++.+++.||+|||+........+....+......+........+...++..+..+..+.+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 364 (398)
T TIGR00895 285 SLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMA 364 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11122334456778899999999999999995444333332222222221222222222233333334445567789999
Q ss_pred ccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHH
Q 013219 370 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 402 (447)
Q Consensus 370 ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l 402 (447)
|.+|++.|+++.|+.+.++.+++.++|.+.+++
T Consensus 365 ~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 365 LFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 999999999999999999999999999887643
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-28 Score=228.57 Aligned_cols=357 Identities=18% Similarity=0.239 Sum_probs=247.9
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc------
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------ 91 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------ 91 (447)
.+.|+|+++++...+|+...+.-|.+++++.|.+.++.++|.+|.|++.|++.+.|.++-++.|.++||.+.|.
T Consensus 22 ~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gL 101 (448)
T COG2271 22 TYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHH
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999991
Q ss_pred ----------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH--HHHcCC
Q 013219 92 ----------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA--WIIMPR 135 (447)
Q Consensus 92 ----------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~--~~~~~~ 135 (447)
|-....+.-|.|+++||+..++++.+.++|..+.++++ ..+..+
T Consensus 102 ilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~ 181 (448)
T COG2271 102 ILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH 181 (448)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhc
Confidence 11112356999999999999999999999998888777 555567
Q ss_pred CCchHHHHhhhHHHHHHH-HHhhcccCChHHHHhcCCh--HHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 136 LDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRT--AEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 136 ~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~~g~~--~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
.+||..|++.++.++++. +..+.+.++|+= .|-+ ||-+ ++ ..| +.+ +
T Consensus 182 ~~w~~~f~~pgiiaiival~~~~~~rd~Pqs---~GLP~ie~~~----------~d-----------~~e--~~~--~-- 231 (448)
T COG2271 182 GGWRAAFYFPGIIAIIVALILLFLLRDRPQS---EGLPPIEEYR----------GD-----------PLE--IYE--E-- 231 (448)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCHHHhh----------cC-----------chh--hhh--h--
Confidence 799999999999888774 556677888862 2221 1110 00 000 000 0
Q ss_pred cccccCCCCCCCcCCCchhH-HHHhhcchhhhhHHHHHHHHHHHHHHHH---HHHHHHHHHhhcccccccCCCcccCCCC
Q 013219 213 VHLLSSNGGNKTTEGKSGLS-LFLMLFSSKLARTTILLWLLLFGNSFAY---YAVVLLISELSSLDTRCRSPLMFSHHPQ 288 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~---y~~~~~~~~l~~~~~~~~~~~~~~~~~~ 288 (447)
+++.+.-..+. ..+..+++|. +|.+..++.+.| |++.-|.|..... ..+.+
T Consensus 232 ---------~~~~~~ls~~~i~~~YVL~Nk~------iW~la~a~vfvYivR~gi~dW~p~YL~e----------~k~~s 286 (448)
T COG2271 232 ---------EKENEGLTAWQIFVKYVLKNKL------IWLLALANVFVYVVRYGINDWGPLYLSE----------VKGFS 286 (448)
T ss_pred ---------hccCCCccHHHHHHHHHHcChH------HHHHHHHHHHHHHHHHHHhhhHHHHHHH----------hcCCC
Confidence 00000011111 2223445554 555556666655 5666666633211 11111
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHH-HHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhh
Q 013219 289 DANLYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTV 363 (447)
Q Consensus 289 ~~~~~~~~~i~~~~~i~g~~~~~~l~dr~--GRr~~l~~-~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~ 363 (447)
..+......+.=.++++|.+++||++||+ |||....+ ++++..++++...... +.....++++...+++.|+.-+
T Consensus 287 ~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqmL 366 (448)
T COG2271 287 LVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQML 366 (448)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHHH
Confidence 12222233445678899999999999996 78766544 4444444444333332 2345556666667777888778
Q ss_pred hHhhccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 364 SLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 364 ~~~~~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
....+.|.-|.+..+++.|+...++.+ |+..+....+++.+..++.+.|.++.+.++++.+.....
T Consensus 367 iGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~ 433 (448)
T COG2271 367 IGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPV 433 (448)
T ss_pred HHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998 777777777766666566666766666666655544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-27 Score=234.80 Aligned_cols=368 Identities=15% Similarity=0.106 Sum_probs=229.6
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------- 90 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------- 90 (447)
.++++.+...+.++++...+++...+...|.+.+++|+++.+.+++.+++.+++.+++++.|+++||+|||
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~ 97 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA 97 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence 45666777778899999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCch
Q 013219 91 -------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 139 (447)
Q Consensus 91 -------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR 139 (447)
.+....++.|++|+++||+..++.+.+.++|..+++.+...+....+||
T Consensus 98 ~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~ 177 (434)
T PRK11663 98 TGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWR 177 (434)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 1122345679999999999999999999999999887776666678999
Q ss_pred HHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccC
Q 013219 140 WLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 218 (447)
Q Consensus 140 ~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
+.+.+.+++.++. .+..+++||+|++...+...++.+ + .. + .+ +.
T Consensus 178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~---------------------~-~~---~----~~--~~--- 223 (434)
T PRK11663 178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH---------------------D-AL---E----LA--QQ--- 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc---------------------c-cc---c----cc--hh---
Confidence 9999888776654 445567899987531110000000 0 00 0 00 00
Q ss_pred CCCCCCcCCCchhHH-HH-hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 219 NGGNKTTEGKSGLSL-FL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 219 ~~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
.++++.+..+ ++ ..++++ +...+....+...+.++++..|.|...... .+.+........
T Consensus 224 -----~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~a~~~~ 285 (434)
T PRK11663 224 -----QEGAGLSRKEILTKYVLLNP---YIWLLSFSYVLVYVVRAAINDWGNLYMSET----------LGVDLVTANSAV 285 (434)
T ss_pred -----ccccCCChhhhHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cCCCHHHHHHHH
Confidence 0000000001 11 112221 222222223333344455555555332110 111111112223
Q ss_pred HHHHhhhhhHHHHHHHHHhhh--Ch-hHHHHHHHHHHHHHHHHHH-Hh-hhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 297 FITSLAEIPGLLLAAILVDTA--GR-KLSITIMFTLSCLFLLPLV-TY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~--GR-r~~l~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.+..++.+++.++.+++.||+ +| |........+.......+. .. .+........+...++..++......+.+|.
T Consensus 286 ~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 365 (434)
T PRK11663 286 SMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAEC 365 (434)
T ss_pred HHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 345677888999999999998 33 3332222211111111111 11 1111111112222222223333445678999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCcc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS 439 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~ 439 (447)
+|++.|+++.|+.+..+++++.++|.+.+++.+..+....+...+++++++.+..+...++.+++...
T Consensus 366 ~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (434)
T PRK11663 366 SHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPREAS 433 (434)
T ss_pred ccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhccc
Confidence 99999999999999999999999999999888766655566677777777766666655566655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=241.67 Aligned_cols=381 Identities=13% Similarity=0.085 Sum_probs=237.1
Q ss_pred CccccHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhh
Q 013219 5 GHVYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVA 84 (447)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~ 84 (447)
|+..|.++...+....+.++.++.++.+++++.+.|+..++...|.+.+++++++.+.|++.+++++++.+++++.|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~ 88 (467)
T PRK09556 9 KPTLDLPLEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYA 88 (467)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHh
Confidence 45566666666667888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCcc---------------------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHh
Q 013219 85 DNYGRSG---------------------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWT 119 (447)
Q Consensus 85 Dr~GRr~---------------------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~ 119 (447)
||+|||. +....++.|++|+++||++.++.+.+.+
T Consensus 89 Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~ 168 (467)
T PRK09556 89 DGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHN 168 (467)
T ss_pred hccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccc
Confidence 9999991 1122356799999999999999999999
Q ss_pred hhhHHHHHHHHHHcCC---CCchHHHHhhhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcc
Q 013219 120 IGSVSEAIGAWIIMPR---LDWRWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKL 195 (447)
Q Consensus 120 iG~l~~~~~~~~~~~~---~~WR~~~~~~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 195 (447)
+|..++++++...... .+||..|.+.+++.++.. +..++.+++|+.. +..++ ++. . ++.
T Consensus 169 lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~---~~~------- 231 (467)
T PRK09556 169 LGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---F---GEP------- 231 (467)
T ss_pred hhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---c---cCc-------
Confidence 9999887776443322 269999888777766654 4445567777532 11010 000 0 000
Q ss_pred ccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHH-hhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 013219 196 VARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL-MLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLD 274 (447)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 274 (447)
..+ + ++ +. ++++......+. ..++++ ....+....+.....+++...|.|.....
T Consensus 232 -------~~~-----~-~~------~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~p~yl~~- 287 (467)
T PRK09556 232 -------ISE-----E-DK------ET-ESTDMTKWQIFVEYVLKNP---VIWLLCFANIFLYIVRIGIDNWSPVYAFQ- 287 (467)
T ss_pred -------cch-----h-hh------cc-ccccCcHHHHHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 000 0 00 00 000000001111 123322 22233333334444455555566632211
Q ss_pred ccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-h-hhhhHHHHHHHH
Q 013219 275 TRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-Y-QSNILTTGLLFG 352 (447)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~ 352 (447)
..+.+.........+..+..+++.+++|+++||+|||+.......+..+....+.. . .+.....+..+.
T Consensus 288 ---------~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 288 ---------ELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred ---------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 01111122222334456678899999999999999988765543332222111111 1 122122222222
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHh------------hchhhHHHHHHHHHH
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVA------------NCHQMTAVVLLVVVI 419 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~------------~~~~~~~~~~~~~~~ 419 (447)
..++..+.....+.+..|.+|.+.|+++.|+.+..+.+ +++++|.+.+++.+ ..+....+.+++++.
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~ 438 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAA 438 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHH
Confidence 22223333333456777999999999999999999997 66899999998887 233344555666666
Q ss_pred HHHHHHHHhcc-ccccC
Q 013219 420 VTSILSVMLIP-FETKG 435 (447)
Q Consensus 420 ~i~~i~~~~~~-pEtkg 435 (447)
+++.+...++. .|+|.
T Consensus 439 ~~~~~~~~~~~~~~~~~ 455 (467)
T PRK09556 439 IGCICLMAIVAVMEERK 455 (467)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 66655555442 45553
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=229.66 Aligned_cols=316 Identities=16% Similarity=0.207 Sum_probs=194.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHH-HHHH-----HHHHhHhhhHHHHhhhhhCCc-------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLI-TTSV-----FAGLVVGAYAWGLVADNYGRS------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i-~s~~-----~~G~~iG~l~~G~l~Dr~GRr------- 90 (447)
+++...+.+++++|++|+..+++..|.+.+++++++.+.+.+ .+.. +++..+|+++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 93 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTL 93 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHH
Confidence 456778889999999999999999999999999988886544 3332 233357999999999999999
Q ss_pred ------------c-----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 91 ------------G-----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 91 ------------~-----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
. +....++.|++|+++||+..++.+.+.++|..+++.++
T Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g 173 (434)
T PRK15075 94 SIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG 173 (434)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01123567999999999999999988888877766655
Q ss_pred HHH--------cCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcccccccc
Q 013219 130 WII--------MPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST 201 (447)
Q Consensus 130 ~~~--------~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (447)
..+ .+..+||++|+++.++..+....+..+||++++...+++ .
T Consensus 174 ~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----------------~------------- 224 (434)
T PRK15075 174 YLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHR----------------P------------- 224 (434)
T ss_pred HHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhc----------------c-------------
Confidence 543 146799999998766655444445566776543211000 0
Q ss_pred CCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCC
Q 013219 202 LPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 281 (447)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~ 281 (447)
+ .+ ..++...+ .++.........+.+...++....+.|......
T Consensus 225 ---~---------------------~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------- 268 (434)
T PRK15075 225 ---S---------------------MR---EIFRSLAA--NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTV------- 268 (434)
T ss_pred ---c---------------------cc---cHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 0 00 01111111 112222222233334445555655555432110
Q ss_pred cccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HH-H-hhhhhHHH-HHHHHHHHHH
Q 013219 282 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LV-T-YQSNILTT-GLLFGARMCV 357 (447)
Q Consensus 282 ~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~-l~-~-~~~~~~~~-~~~~~~~~~~ 357 (447)
.+.+.........+..+..+++.++.++++||+|||+.+..+...+.+..+. +. . ........ ...+...++.
T Consensus 269 ---~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (434)
T PRK15075 269 ---LHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLY 345 (434)
T ss_pred ---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 0111112222334456677888999999999999999877654433222211 11 1 11111111 1111111222
Q ss_pred hhhhhhhHhhccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHhhch
Q 013219 358 MGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCH 407 (447)
Q Consensus 358 ~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~~~~ 407 (447)
....+..+.+.+|.+|++.|+++.|+.+.+++. ++.++|.+.+++.+..+
T Consensus 346 g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 346 GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 222334567889999999999999998877775 58889999888777655
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-25 Score=222.45 Aligned_cols=338 Identities=19% Similarity=0.065 Sum_probs=219.1
Q ss_pred HHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch-----------------------------
Q 013219 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH----------------------------- 92 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~----------------------------- 92 (447)
.......|.+..+++.++.+.|++.+...++..+++++.|+++||+|||..
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 113 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI 113 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 444556677778888899999999999999999999999999999999910
Q ss_pred ----------------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHh
Q 013219 93 ----------------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 156 (447)
Q Consensus 93 ----------------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~ 156 (447)
....++.|+.|+++|++..++.+...++|..+++.++..+....+||+.+.+.++..++..+..
T Consensus 114 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 114 YLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 0011234999999999999999999999999888887666555689999998888777766666
Q ss_pred hcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHh
Q 013219 157 GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLM 236 (447)
Q Consensus 157 ~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (447)
+.+||+|+.. +++ ++. .++....++.
T Consensus 194 ~~l~~~~~~~--~~~-~~~---------------------------------------------------~~~~~~~~~~ 219 (417)
T PRK10489 194 LRLPALPPPP--QPR-EHP---------------------------------------------------LRSLLAGFRF 219 (417)
T ss_pred HhCCCCCCCC--ccc-ccc---------------------------------------------------hHHHHHHHHH
Confidence 7778765310 000 000 0000012233
Q ss_pred hcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhh
Q 013219 237 LFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT 316 (447)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr 316 (447)
+++++..+..++...... . .++...+.+..... ..+.+.........+..++.+++.++.+++.||
T Consensus 220 ~~~~~~~~~~~~~~~~~~---~-~~~~~~~~p~~~~~----------~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~ 285 (417)
T PRK10489 220 LLASPVVGGIALLGGLLT---M-ASAVRVLYPALADE----------VWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS 285 (417)
T ss_pred HHcChHHHHHHHHHHHHH---H-HHhHHHhhHHHHHh----------ccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344333333222211111 1 12222222322110 001111111122234456778888999999999
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHH
Q 013219 317 AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCP 396 (447)
Q Consensus 317 ~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~ 396 (447)
.++++.+..+..+..+.++.+....+.....+..+...++.....+....+..|..|.+.|+++.|+.+....++..++|
T Consensus 286 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~ 365 (417)
T PRK10489 286 ARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGA 365 (417)
T ss_pred cCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHH
Confidence 87777776666554444433333322222122222222222222234567889999999999999999999999999999
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCccccccccCC
Q 013219 397 LVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFTSD 447 (447)
Q Consensus 397 ~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~~~~~~~ 447 (447)
.+.+.+.+..+....++.++.+.++..++.+...||+|++++||+.||.||
T Consensus 366 ~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 366 ALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 999988877665566667777766666667777799999999999999998
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.3e-25 Score=224.96 Aligned_cols=387 Identities=18% Similarity=0.235 Sum_probs=229.6
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
+++.|++.+..+.++++.+++|....+...|.+.+++|++..+.+++.+.+.+|+.+++++.|+++||+|||
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~ 93 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV 93 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 467888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCc
Q 013219 91 --------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 138 (447)
Q Consensus 91 --------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~W 138 (447)
.+....++.|+.|+++|++..++......+|..+++.+...+.+..+|
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w 173 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGW 173 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 112234567999999999999999999999999998888777778899
Q ss_pred hHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccC
Q 013219 139 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 218 (447)
Q Consensus 139 R~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
|+.+.+..++.++.+.....+||+|+|...+++.++.++..+...+.+.+ . .. ....-... ........
T Consensus 174 ~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~----~~~~~~~~-~~~~~~~~- 242 (496)
T PRK03893 174 RALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHR-I----IN----ILLTLAAA-AALWFCFA- 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhH-H----HH----HHHHHHHH-HHHHHHHH-
Confidence 99999887777766666778899988754332222111111111000000 0 00 00000000 00000000
Q ss_pred CCCCCCcCCCchhHH----------HHhh-cc-hhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccC
Q 013219 219 NGGNKTTEGKSGLSL----------FLML-FS-SKLARTTI-LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 285 (447)
Q Consensus 219 ~~~~~~~~~~~~~~~----------~~~l-~~-~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 285 (447)
. . . ...+.. +... .. ++.++... .+....+......++...+.|..... ..
T Consensus 243 --~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~----------~~ 306 (496)
T PRK03893 243 --G--N-L-QNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKT----------DL 306 (496)
T ss_pred --h--h-h-cchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHh----------hc
Confidence 0 0 0 000000 0000 00 00001111 11111111111111222333322210 01
Q ss_pred CCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHhhhhhh
Q 013219 286 HPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI--LTTGLLFGARMCVMGAFTV 363 (447)
Q Consensus 286 ~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 363 (447)
+.+............++.+++.++.+++.||+|||+.+..+..+..+..+.+....... ......+.......+..+.
T Consensus 307 g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (496)
T PRK03893 307 GYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGL 386 (496)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchh
Confidence 11112222233445677888999999999999999988776655444333222221111 1111112111222233345
Q ss_pred hHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHHhcccc
Q 013219 364 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVV-VIVTSILSVMLIPFE 432 (447)
Q Consensus 364 ~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~i~~i~~~~~~pE 432 (447)
...+..|.+|.+.|++++|+.+..+.+++.++|.+.+.+.+..+....++..+. +.+++.+...+..|+
T Consensus 387 ~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (496)
T PRK03893 387 LPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLIGLDMPS 456 (496)
T ss_pred hHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 567889999999999999999999999999999999888776654444444333 333344444443343
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=215.06 Aligned_cols=366 Identities=13% Similarity=0.141 Sum_probs=214.5
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------- 91 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------- 91 (447)
+.+++|.++..+.+.+...+.++..+++..|.+.++ ++++.+.+++.+++.+++.+++++.|+++||+|||.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~ 101 (452)
T PRK11273 23 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 101 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHH
Confidence 456677777777788888889988888889999888 999999999999999999999999999999999990
Q ss_pred -------------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhH-HHHHHHHHHc
Q 013219 92 -------------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSV-SEAIGAWIIM 133 (447)
Q Consensus 92 -------------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l-~~~~~~~~~~ 133 (447)
+.....+.|++|+++||+..++.+.+.++|.. .++++.....
T Consensus 102 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~ 181 (452)
T PRK11273 102 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMA 181 (452)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 00112345999999999999999999998864 3444333322
Q ss_pred CCCCchHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 134 PRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 134 ~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
...+||+.+++.+++.++. .+..+++||+|+.. +..++++. +++.. .+.++
T Consensus 182 ~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~-----~~~~~-------------~~~~~------- 233 (452)
T PRK11273 182 WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSC---GLPPIEEY-----KNDYP-------------DDYNE------- 233 (452)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc---CCCChhhh-----hhccc-------------ccccc-------
Confidence 3359999999887776664 55567789999752 11111100 00000 00000
Q ss_pred cccccCCCCCCCcCCCchhHHH-HhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLF-LMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDAN 291 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 291 (447)
++.++ .+....+ +.+++++. .+......+.....+|+...+.|...... .+.+...
T Consensus 234 ---------~~~~~-~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~P~~l~~~----------~g~s~~~ 290 (452)
T PRK11273 234 ---------KHEQE-LTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKEV----------KHFALDK 290 (452)
T ss_pred ---------ccCCC-ccHHHHHHHHHHcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHH
Confidence 00000 0000011 11223222 22222222222333445555555432110 0111111
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHH-HHHHHHHHHHHHHHh-hhh-hHHHHHHHHHHHHHhhhhhhhHh
Q 013219 292 LYIDEFITSLAEIPGLLLAAILVDTA--GRKLSITI-MFTLSCLFLLPLVTY-QSN-ILTTGLLFGARMCVMGAFTVSLI 366 (447)
Q Consensus 292 ~~~~~~i~~~~~i~g~~~~~~l~dr~--GRr~~l~~-~~~~~~~~~~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 366 (447)
......+..+..+++.+++++++||+ |||....+ ......+....+... ... ....+.++.......+.......
T Consensus 291 ~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 370 (452)
T PRK11273 291 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGL 370 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHH
Confidence 11223345667788999999999999 55543322 111111111111111 111 11112222222222222333455
Q ss_pred hccccCCcchhhhHhhHHHHHHhHhHhH-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH-hccccccCC
Q 013219 367 YAAEIYPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVM-LIPFETKGQ 436 (447)
Q Consensus 367 ~~~ElfP~~~R~~~~g~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~-~~~pEtkg~ 436 (447)
+..|.+|++.|+++.|+.+..+.+++.+ +|.+.+++.+..+....|.+.+++++++.+... +..+|+|++
T Consensus 371 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (452)
T PRK11273 371 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRHH 442 (452)
T ss_pred HHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhccccchH
Confidence 6789999999999999999999998765 688888887766655556666666666655554 334566554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-24 Score=213.66 Aligned_cols=346 Identities=19% Similarity=0.216 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------------
Q 013219 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------------------- 90 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------------------- 90 (447)
++..+.+|...++...|.+.+++++++.+.+++.++..++..+++++.|+++||+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~ 81 (399)
T TIGR00893 2 VTVINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA 81 (399)
T ss_pred eehHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence 3567889999999999999999999999999999999999999999999999999999
Q ss_pred ------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH
Q 013219 91 ------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 152 (447)
Q Consensus 91 ------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~ 152 (447)
.+....++.|+.|+++|++..++.+....+|.++++.++..+..+.+||+.+.+.+++.++.
T Consensus 82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 161 (399)
T TIGR00893 82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIW 161 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 12233467799999999999999999999999999888877666789999999888777665
Q ss_pred HH-HhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchh
Q 013219 153 LA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGL 231 (447)
Q Consensus 153 ~~-~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (447)
.+ ..+++||+|+-- +...++.++... ++ ...+.+. +++.++ ..
T Consensus 162 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~~------------~~~~~~~------------~~~~~~---~~ 205 (399)
T TIGR00893 162 GVLWLKFIPDPPQKA--KWLTEEEKYIVV-------GG------------LLAEQQG------------KGPSTP---KK 205 (399)
T ss_pred HHHhhheecCCCCcc--ccCCHHHHhhcc-------hh------------hcccccc------------ccccCC---Cc
Confidence 44 445678876421 111111110000 00 0000000 000000 01
Q ss_pred HHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHH
Q 013219 232 SLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 311 (447)
Q Consensus 232 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~ 311 (447)
...+++++++. ........+.....++....+.+..... ..+.+.........+..+..+++.++.+
T Consensus 206 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g 272 (399)
T TIGR00893 206 YQIKELLKDRR---VWGLALGQFLVNIGLGFFLTWFPTYLVQ----------ERGLSILEAGFMASLPGIVGFIGMILGG 272 (399)
T ss_pred cchHHHhcCHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHH----------HhcccHHHhhHHHHHHHHHHHHHHHHHH
Confidence 12334444332 2222222222222333332233321100 0011111112223445667788999999
Q ss_pred HHHhhhChhH--HHHHHHH--HHHHHHHHH--HHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHH
Q 013219 312 ILVDTAGRKL--SITIMFT--LSCLFLLPL--VTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA 384 (447)
Q Consensus 312 ~l~dr~GRr~--~l~~~~~--~~~~~~~~l--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~ 384 (447)
++.||+|||+ ....... .+.+..... ... .+.............+..+..+..+.+.+|.+|++.|+++.|+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (399)
T TIGR00893 273 RLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLI 352 (399)
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHH
Confidence 9999999996 2111111 111111111 111 11111111111222222234567889999999999999999999
Q ss_pred HHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHH
Q 013219 385 NAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVM 427 (447)
Q Consensus 385 ~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~ 427 (447)
+.+..+++.++|.+.+++.+..+ ....+++.+.+.+++.+..+
T Consensus 353 ~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 353 NSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877655 44455556666666555444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-24 Score=216.88 Aligned_cols=356 Identities=15% Similarity=0.099 Sum_probs=211.4
Q ss_pred cHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhC
Q 013219 9 TVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG 88 (447)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~G 88 (447)
|.++.++...+.+.|++.+....+.++.+.++....+...|.+.++++++.++.+++.+++.+|+.+|+++.|+++||+|
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G 99 (476)
T PLN00028 20 HKATEFRLFSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYG 99 (476)
T ss_pred cccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566677778888888888888888999998888888889999999999999999999999999999999999999999
Q ss_pred Cc---------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 89 RS---------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 89 Rr---------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
|| ......++.|++|+++||+..++.+...++|..++..+.
T Consensus 100 ~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~ 179 (476)
T PLN00028 100 PRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLM 179 (476)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHH
Confidence 99 011123567999999999999998877776666554333
Q ss_pred HH----Hc-----CCCCchHHHHhhhHHHHHHHHHhhccc-CChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcccccc
Q 013219 130 WI----IM-----PRLDWRWLLGLSSIPSFILLAFLGFQP-ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARR 199 (447)
Q Consensus 130 ~~----~~-----~~~~WR~~~~~~~i~~~i~~~~~~~lp-ESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 199 (447)
.. +. +..+||+.|.+.+++.++..+..++++ +.|+ ++.++.+ + +.
T Consensus 180 ~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~-------~-~~------------ 234 (476)
T PLN00028 180 PLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK-------K-SG------------ 234 (476)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH-------h-cC------------
Confidence 22 11 125899999998887776655544444 3342 1111100 0 00
Q ss_pred ccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 013219 200 STLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRS 279 (447)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~ 279 (447)
+ . ++.+....+++.++.+ ++...+..++.....++....+.+.....
T Consensus 235 -----~------------------~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~------ 281 (476)
T PLN00028 235 -----T------------------M-PKDSFSKVLRYGVTNY---RTWILALTYGYSFGVELTMDNIIAEYFYD------ 281 (476)
T ss_pred -----c------------------c-ccccHHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHhHHHHHHHH------
Confidence 0 0 0000011222333222 22222222222223333333333322110
Q ss_pred CCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhH-------HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 013219 280 PLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL-------SITIMFTLSCLFLLPLVTYQSNILTTGLLFG 352 (447)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~-------~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 352 (447)
..+.+.........+..++.+++.+++|+++||+|||. .......+.++.++.+....+.......++.
T Consensus 282 ----~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l 357 (476)
T PLN00028 282 ----RFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRANSLGAAIVVMIL 357 (476)
T ss_pred ----hcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 00111122222334456778889999999999998762 2222222222222222222221111222222
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHhc
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
..++..+..+..+.+.+|+.| +.|+++.|+.+..+.++++++|.+.. .... +....+++++++.+++.++.++.
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~~f~~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 358 FSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTETGISLMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence 222222334456777788765 68999999999988888888887654 2222 23345666776777766655544
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-24 Score=215.59 Aligned_cols=357 Identities=15% Similarity=0.172 Sum_probs=221.1
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc----------------------cccCCCcchhHHHHHHHHHHhH
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKS----------------------EWNLSSTEESLITTSVFAGLVV 75 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~i~s~~~~G~~i 75 (447)
.+++.++.+++++.+++...+.|+..++++.|.+.+ |+++++.+.|++.+++++|+.+
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 367888899999999999999999999999888866 7889999999999999999999
Q ss_pred hhhHHHHhhhhhCCc------------------------------------------chhhhhhhhcccCCCCchhHHHH
Q 013219 76 GAYAWGLVADNYGRS------------------------------------------GHVFLSWFLEFVPPSNRGMWMVI 113 (447)
Q Consensus 76 G~l~~G~l~Dr~GRr------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~ 113 (447)
++++.|+++||+||| .+....++.|+.|+++||+..++
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 171 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM 171 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence 999999999999999 12233456799999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHcCC-CCchHHHHhhhHHHHHHHHH-hhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCC
Q 013219 114 FSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLP 191 (447)
Q Consensus 114 ~~~~~~iG~l~~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~ 191 (447)
.+.+..+|..+++++...+... .+||.+|++.++++++..+. ..+.||+|+.. +...++.++. +.+...
T Consensus 172 ~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~---i~~~~~---- 242 (465)
T TIGR00894 172 STSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIH--PCISKFEKKY---INSSLQ---- 242 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccC--CCCCHHHHHH---HHhhcc----
Confidence 9999999999998887766666 49999999998888776544 45567888631 1111111111 110000
Q ss_pred CCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 013219 192 NGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELS 271 (447)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~ 271 (447)
+.+ + ..+.+ ..++++++++. ....+...++..+.++....|.|...
T Consensus 243 -------------~~~-------------~--~~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 243 -------------GQK-------------G--STRQS---LPIKAIPKSLP---VWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred -------------ccc-------------C--CCCCC---CCHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000 12444554432 22333333444445555555555332
Q ss_pred cccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH--------HHHHHH--HHHHHHHHHHhh
Q 013219 272 SLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI--------TIMFTL--SCLFLLPLVTYQ 341 (447)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l--------~~~~~~--~~~~~~~l~~~~ 341 (447)
... .+.+.........+..++.+++.+++++++||+++|+.. ..+... ..++.+......
T Consensus 289 ~~~----------~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (465)
T TIGR00894 289 SWV----------LRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS 358 (465)
T ss_pred HHH----------hCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 110 011111112223345667788899999999998654211 111111 111111111111
Q ss_pred hh-hHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc--h-hhHHHHHHHH
Q 013219 342 SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC--H-QMTAVVLLVV 417 (447)
Q Consensus 342 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~--~-~~~~~~~~~~ 417 (447)
.. ....+++.....+..+..+..+....|..|. .++++.|+.+..+.++++++|.+.+++.+.. + ....+.+.++
T Consensus 359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~ 437 (465)
T TIGR00894 359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAF 437 (465)
T ss_pred CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHH
Confidence 11 1122222222222222233345566677776 8999999999999999999999998766532 2 2334556666
Q ss_pred HHHHHHHHHHh
Q 013219 418 VIVTSILSVML 428 (447)
Q Consensus 418 ~~~i~~i~~~~ 428 (447)
..+++.++..+
T Consensus 438 ~~~i~~i~~~~ 448 (465)
T TIGR00894 438 VNILCVIFYLI 448 (465)
T ss_pred HHHHHHHHeee
Confidence 66666555443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-23 Score=202.64 Aligned_cols=321 Identities=13% Similarity=0.069 Sum_probs=199.2
Q ss_pred HHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------------------------
Q 013219 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------------------- 90 (447)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------------------- 90 (447)
......|.+.+++|+++.+.+++.+.+.+++.+++++.|+++||+|||
T Consensus 27 ~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ 106 (390)
T PRK03545 27 VPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIG 106 (390)
T ss_pred HHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 344557889999999999999999999999999999999999999999
Q ss_pred --------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH-HhhcccC
Q 013219 91 --------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPE 161 (447)
Q Consensus 91 --------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpE 161 (447)
.+...+++.|+.|+++||+..++.+....+|..+++.++..+.++.+||+.+++.++..++..+ ...++||
T Consensus 107 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~ 186 (390)
T PRK03545 107 IAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPL 186 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1223346789999999999999999999999999888877766678999999998887766543 3445676
Q ss_pred ChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh
Q 013219 162 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK 241 (447)
Q Consensus 162 SP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (447)
.|+ + +.++ .++.+++++++
T Consensus 187 ~~~----~-~~~~--------------------------------------------------------~~~~~~~~~~~ 205 (390)
T PRK03545 187 LPS----E-HSGS--------------------------------------------------------LKSLPLLFRRP 205 (390)
T ss_pred CCC----C-Ccch--------------------------------------------------------HHHHHHHHhCc
Confidence 542 0 0000 00122233333
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChh
Q 013219 242 LARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 320 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr 320 (447)
..+...... +.....++....+.+ .+.+. .+.+.........+..+..+++.++.+++.||+|||
T Consensus 206 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~-----------~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~ 271 (390)
T PRK03545 206 ALVSLYLLT---VVVVTAHFTAYSYIEPFVQQV-----------AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG 271 (390)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-----------cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 222222111 111112222111111 11110 011111112223445677889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 321 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
.....................+........+...+...+.......+..|..| +.|+++.|+.+....++..++|.+.+
T Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G 350 (390)
T PRK03545 272 FLLIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGN 350 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76544333322222222222222211111112212222222334556668877 57899999999999999999999999
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCccc
Q 013219 401 ALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 440 (447)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e 440 (447)
.+.+..+....+...+.+.+++.++..... .-...++||
T Consensus 351 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 389 (390)
T PRK03545 351 QVSLHLGLSSIGYVGAALALAALVWSILIF-RRFPVTLEE 389 (390)
T ss_pred HHHhccChhHHHHHHHHHHHHHHHHHHHHc-cccchhhcc
Confidence 888877666666666666677666655543 233445555
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-23 Score=208.02 Aligned_cols=361 Identities=14% Similarity=0.117 Sum_probs=214.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------
Q 013219 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------- 91 (447)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------- 91 (447)
.+..+..+.+++...+.+++.+.+..|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 4566667777888899999888888898875 5999999999999999999999999999999999990
Q ss_pred ---------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHH-HHcCCCC
Q 013219 92 ---------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW-IIMPRLD 137 (447)
Q Consensus 92 ---------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~-~~~~~~~ 137 (447)
+....++.|+.|+++||+..++.+....+|..+++.+.. ......+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 001123459999999999999999999999887765543 3333468
Q ss_pred chHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccc
Q 013219 138 WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216 (447)
Q Consensus 138 WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
||..|++.+++.++. ++..+++||+|+... ..+.. +.+ + +. + ++..++.
T Consensus 184 w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~-----~~~--~-~~-~------------~~~~~~~------ 233 (438)
T TIGR00712 184 WHAALYFPAICAIIVALFAFAMMRDTPQSCG---LPPIE-----EYR--N-DY-P------------DDYNEKA------ 233 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHhcC---CCCch-----hcc--c-cc-c------------ccccccc------
Confidence 999999988877664 455667899987521 11000 000 0 00 0 0000000
Q ss_pred cCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
+. +.+.++ ...+.+++++.. .......+.....+|+...+.|..... ..+.+........
T Consensus 234 ----~~-~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~l~~----------~~g~s~~~~~~~~ 293 (438)
T TIGR00712 234 ----EQ-ELTAKE--IFMQYVLPNKLL---WYIAIANVFVYLLRYGVLDWSPTYLKE----------VKHFALDKSSWAY 293 (438)
T ss_pred ----cc-ccchHH--HHHHHHccCchH---HHHHHHHHHHHHHHHHHHHhHHHHHHH----------ccCCChhhHHHHH
Confidence 00 000000 011123333221 111112222223334444444432210 0011111112233
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHH---HHHHHHHHh-h-hhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC---LFLLPLVTY-Q-SNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~---~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.+..+..+++.++++++.||++|++....+..... +....+... . +.......++...+...++.........|.
T Consensus 294 ~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 373 (438)
T TIGR00712 294 FLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALEL 373 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHh
Confidence 45567788899999999999964332112221111 111111111 1 112111112222222222222334567899
Q ss_pred CCcchhhhHhhHHHHHHhHhH-hHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
+|.+.|+++.|+.+..+.+++ .++|.+.+.+.+..+....+.+.+++.+++.+...++.||.|
T Consensus 374 ~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 374 APKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred cChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999875 578999988877666555566666667777777778788866
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-23 Score=202.32 Aligned_cols=332 Identities=12% Similarity=0.119 Sum_probs=212.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------
Q 013219 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------- 90 (447)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------- 90 (447)
-|+++...+.++++.++.+...++...|.+.+++++|+++.+++.+...+|+.+|+++.|++.||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~ 83 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMI 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467788888899999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHH-HcCCCCchH
Q 013219 91 -----------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI-IMPRLDWRW 140 (447)
Q Consensus 91 -----------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~-~~~~~~WR~ 140 (447)
.+....++.|+.|+++||...+..+....+|..+++.+... +....+||+
T Consensus 84 i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~ 163 (394)
T PRK03699 84 LAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW 163 (394)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 11223356799999999999999888888888777665443 344579999
Q ss_pred HHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCC
Q 013219 141 LLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNG 220 (447)
Q Consensus 141 ~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (447)
.+.+.+++.++..+..++ .+.|+. ++. + + ++.
T Consensus 164 ~f~~~~~~~~~~~~~~~~-~~~p~~-------~~~------------~-----------~---~~~-------------- 195 (394)
T PRK03699 164 VYACIGLVYVAIFILTLF-SEFPAL-------GKH------------A-----------P---KAD-------------- 195 (394)
T ss_pred HHHHHHHHHHHHHHHHHh-cCCccc-------ccc------------C-----------c---ccc--------------
Confidence 999887777665443332 222320 000 0 0 000
Q ss_pred CCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHH
Q 013219 221 GNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITS 300 (447)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 300 (447)
+ ... + ++..++........+.....+++...|.|...... .+.+............
T Consensus 196 ~--~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~----------~g~s~~~~~~~~~~~~ 251 (394)
T PRK03699 196 K--PVA-K-----------EKWGIGVLFLAIAALLYILAQLTFISWVPEYAQKK----------FGMSLEDAGNLVSNFW 251 (394)
T ss_pred C--ccc-c-----------ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCChHHhhHHHHHHH
Confidence 0 000 0 00112222233333333344555555555332110 0111111111122335
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhH
Q 013219 301 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 380 (447)
Q Consensus 301 ~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~ 380 (447)
+...+|.++.+++.||+|||+.+.....++.+.+..+....+........+...++..+.++....+..|..|.+ +++.
T Consensus 252 ~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~ 330 (394)
T PRK03699 252 MAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKL 330 (394)
T ss_pred HHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHH
Confidence 567889999999999999999887766555544433333322222222222233333344555566777887755 6778
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 013219 381 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 426 (447)
Q Consensus 381 ~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 426 (447)
.+.....+.+++.++|.+.+++.+..+....++..+++.+++.+..
T Consensus 331 ~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 331 VNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 8999999999999999999988776665555666665555554433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-23 Score=203.57 Aligned_cols=316 Identities=15% Similarity=0.121 Sum_probs=194.4
Q ss_pred HHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------------------------
Q 013219 37 EAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------------- 91 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------------- 91 (447)
...+...++...|.+++++|+++++.+++.+++.+|..+++++.|+++||+|||.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (377)
T TIGR00890 15 TSGYVYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAAL 94 (377)
T ss_pred HhhHHhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3334567788899999999999999999999999999999999999999999991
Q ss_pred ---------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHH-
Q 013219 92 ---------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF- 155 (447)
Q Consensus 92 ---------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~- 155 (447)
+....+..|+.| ++||++.+..+.+..+|.++++.+...+....+||+.+++.+++.++..+.
T Consensus 95 ~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 173 (377)
T TIGR00890 95 YLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG 173 (377)
T ss_pred HHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 112224557777 569999999999999998776555444445679999999988877776544
Q ss_pred hhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHH
Q 013219 156 LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 235 (447)
Q Consensus 156 ~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (447)
.+++||.|+- + +.++ .+. . +++ ...+
T Consensus 174 ~~~~~~~~~~--------~-----------~~~~-----------~~~--------------------~-~~~---~~~~ 199 (377)
T TIGR00890 174 AFLIGYPPGQ--------L-----------IKTN-----------IEV--------------------S-VKD---YTVW 199 (377)
T ss_pred HHheecCchh--------c-----------cccC-----------ccc--------------------c-hhh---hhHH
Confidence 3445554420 0 0000 000 0 000 0122
Q ss_pred hhcchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHH
Q 013219 236 MLFSSKLARTTILLWLLLFGNSFAYYAV-VLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILV 314 (447)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~ 314 (447)
+.++++......+ ..+...+.+... ..+.+...+ .+.+.........+..+..+++.++.+++.
T Consensus 200 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 264 (377)
T TIGR00890 200 EMLRTPQFWVLYL---SFFLNAVSGLLLIGLYKPYGQS------------LGLSDGFLVLAVSISSIFNGGGRPFLGALS 264 (377)
T ss_pred HHHcCccHHHHHH---HHHHHhHHHHHHHHHHHHHHHH------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343332221111 111111111111 111111110 011111222233455677788999999999
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhH
Q 013219 315 DTAGRKLSITIMFTLSCLFLLPLVTYQSN--ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGG 392 (447)
Q Consensus 315 dr~GRr~~l~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~ 392 (447)
||+|||+.+..+..+..+..+.+....+. .......+...++.....+....+.+|.+|.+.|+++.|+.+....+++
T Consensus 265 dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~ 344 (377)
T TIGR00890 265 DKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAG 344 (377)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHH
Confidence 99999998877766655554433332211 1111111112222222334456788999999999999999999999999
Q ss_pred hHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013219 393 MVCPLVAVALVANCHQMTAVVLLVVVIVTS 422 (447)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 422 (447)
.++|.+.+.+.+..+....+.+.+++.+++
T Consensus 345 ~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 345 IFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999988777655544555555554443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=193.39 Aligned_cols=328 Identities=13% Similarity=0.030 Sum_probs=200.2
Q ss_pred hHHHHHHHHHHHHHhhccc-ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------------------
Q 013219 32 LGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------- 91 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------- 91 (447)
+..+....+........|. +++++++|+.+.|++.+++.+++.+++++.|+++||+|||.
T Consensus 22 ~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~ 101 (399)
T PRK05122 22 MFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLA 101 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHh
Confidence 3444455554444545554 67889999999999999999999999999999999999990
Q ss_pred -----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHH
Q 013219 92 -----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 142 (447)
Q Consensus 92 -----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~ 142 (447)
+....+..|+.|+++|+++.++.+....+|..+++.++..+..+.+||..+
T Consensus 102 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~ 181 (399)
T PRK05122 102 GLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLG 181 (399)
T ss_pred hhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHH
Confidence 000113459999999999999999999999888888877766778999998
Q ss_pred HhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCC
Q 013219 143 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 222 (447)
Q Consensus 143 ~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
++.++.+++..+.....||++. + + ++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~----~-~-~~------------------------------------------------ 207 (399)
T PRK05122 182 LLIMLLALLGLLLARPRPAVPP----V-K-GE------------------------------------------------ 207 (399)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC----C-C-cc------------------------------------------------
Confidence 8776665544433333333221 0 0 00
Q ss_pred CCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhh
Q 013219 223 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 302 (447)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 302 (447)
+. ++++.+++ .++....... ..+.++....+.+...... +..... ....+..+.
T Consensus 208 ----~~----~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~--~~~~~~~~~ 261 (399)
T PRK05122 208 ----RL----PFRRVLGR-VWPYGMGLAL----ASIGFGTIATFITLYYAAR-----------GWDGAA--LALTLFGVA 261 (399)
T ss_pred ----ch----hHHHHHHH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHHc-----------ccccch--HHHHHHHHH
Confidence 00 01111111 1111111111 1111211111222111000 001111 112334566
Q ss_pred hhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhh
Q 013219 303 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAG 382 (447)
Q Consensus 303 ~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g 382 (447)
.+++.++.+++.||+|||+.+..+..+..+....+....+........+...++....++.......|.+|.+.|+++.|
T Consensus 262 ~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g 341 (399)
T PRK05122 262 FVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALG 341 (399)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67888999999999999998877666555544443333332222222222222222233444556779999999999999
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCccc
Q 013219 383 AANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 440 (447)
Q Consensus 383 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e 440 (447)
+.+....+++.++|.+.+.+.+..+....+.+.+.+.+++.+...++ ++.++++.+|
T Consensus 342 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 398 (399)
T PRK05122 342 AYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL-YRRAPRAVPE 398 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh-cccccccCCC
Confidence 99999999988888888877776665556666777777776665554 5666666655
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-21 Score=192.96 Aligned_cols=338 Identities=12% Similarity=0.045 Sum_probs=207.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------- 90 (447)
|.....+.++.+....+ ..++...|.+++|+++|.++.+++.+++.+|+.+++++.|+++||+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~ 87 (393)
T PRK09705 9 FMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVG 87 (393)
T ss_pred HHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHH
Confidence 33334444554443333 5667888999999999999999999999999999999999999999999
Q ss_pred ---------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCC-CCchHHH
Q 013219 91 ---------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLL 142 (447)
Q Consensus 91 ---------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~-~~WR~~~ 142 (447)
.+....++.|+.| ++|+++.+..+.+..+|..+++.+...+..+ .+||..+
T Consensus 88 ~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~ 166 (393)
T PRK09705 88 ALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTL 166 (393)
T ss_pred HHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 1122334568887 7899999999999888988888776655444 4899988
Q ss_pred HhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCC
Q 013219 143 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 222 (447)
Q Consensus 143 ~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
.+.+++.++..+..+... ++++++ + + + + +
T Consensus 167 ~~~~~~~~~~~~~~~~~~--------~~~~~~-------------------~-------~--~-----~---------~- 195 (393)
T PRK09705 167 AWWALPAVVALFAWWWQS--------AREVAS-------------------S-------H--K-----T---------T- 195 (393)
T ss_pred HHHHHHHHHHHHHHHHHh--------cCCCcc-------------------c-------c--C-----C---------C-
Confidence 766665554333222110 000000 0 0 0 0 0
Q ss_pred CCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhh
Q 013219 223 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 302 (447)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 302 (447)
. + .++.++++ +........+.....+++...+.+...... +.+.........+..+.
T Consensus 196 -~-~-------~~~~l~~~---~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~-----------g~s~~~ag~~~~~~~i~ 252 (393)
T PRK09705 196 -T-T-------PVRVVFTP---RAWTLGVYFGLINGGYASLIAWLPAFYIEI-----------GASAQYSGSLLALMTLG 252 (393)
T ss_pred -c-C-------CcccccCH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----------CCChhhhhHHHHHHHHH
Confidence 0 0 00011111 111222222233344555555555332110 11111112223455678
Q ss_pred hhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhhhhhHhhccccC-CcchhhhH
Q 013219 303 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRSTG 380 (447)
Q Consensus 303 ~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~ 380 (447)
.++|.++.+++.||+|||+.+.++..++.+....+.. ..+...... +...+...+.++.......+.+ |++.|++.
T Consensus 253 ~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~ 330 (393)
T PRK09705 253 QAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVLWA--MVCGLGLGGAFPLCLLLALDHSVQPAIAGKL 330 (393)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHHHH--HHHHHhccchHHHHHHHHHhhcCCHHHHHHH
Confidence 8899999999999999998887776555444333222 211111111 1111222223344445556666 47899999
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHHHHhccccccCCCcc
Q 013219 381 AGAANAMGRIGGMVCPLVAVALVANCHQM-TAVVLLVVVIVTSILSVMLIPFETKGQELS 439 (447)
Q Consensus 381 ~g~~~~~~~i~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~ 439 (447)
.|+.+.++.+++.++|.+.+++.+..+.+ ..+.+.+.++++..++.+.+.|||.+|...
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLWV 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchhc
Confidence 99999999999999999999888776533 334455566667777778889999887654
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=197.39 Aligned_cols=326 Identities=17% Similarity=0.175 Sum_probs=195.6
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------- 90 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------- 90 (447)
++++..++++..+++..|.+.+++++++.+.+++.++..++..+++++.|+++||+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 81 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST 81 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999999999999999
Q ss_pred -------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHH-HHHHHHcCCCCchHHHHhhhHHHH
Q 013219 91 -------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEA-IGAWIIMPRLDWRWLLGLSSIPSF 150 (447)
Q Consensus 91 -------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~-~~~~~~~~~~~WR~~~~~~~i~~~ 150 (447)
.+...+++.|+.|+++|++..++.+.+..+|..+++ ++...+....+||..+++.++..+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI 161 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 123334677999999999999999999999999888 455555566799999998777665
Q ss_pred HH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCc
Q 013219 151 IL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 229 (447)
Q Consensus 151 i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
+. .+..+++||+|+.. ++.++ ++ +...+.++. +. ++ +++.+.
T Consensus 162 ~~~~~~~~~~~~~~~~~---~~~~~-------------~~--------~~~~~~~~~-------~~-----~~-~~~~~~ 204 (379)
T TIGR00881 162 IVSLICFLLLRDSPQSC---GLPPA-------------EE--------MPNEEPDGD-------AE-----KK-EEELTK 204 (379)
T ss_pred HHHHHHheeeCCCcccc---ccCcc-------------cc--------Ccccccccc-------cc-----cc-cccccc
Confidence 54 45566778887521 10000 00 000000000 00 00 000000
Q ss_pred hhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHH
Q 013219 230 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 309 (447)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~ 309 (447)
.....+.+++++.... .....+......++...+.+..... ..+.+.........+..+..+++.++
T Consensus 205 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~ 271 (379)
T TIGR00881 205 KQIFLQYVLLNKVLWY---ISLGYVFVYVVRTGILDWSPLYLTQ----------EKGFSKEKASWAFTLYELGGLVGTLL 271 (379)
T ss_pred hHHHHHHHHhcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------HhCCCHHHHHHHHHHHHHHcchhHHH
Confidence 1112333443332221 1111122222222222222221100 00111112222334456777889999
Q ss_pred HHHHHhhhC-hhHHHHH-HHHH-HHHHHHHHHHh-h-hhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHH
Q 013219 310 AAILVDTAG-RKLSITI-MFTL-SCLFLLPLVTY-Q-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA 384 (447)
Q Consensus 310 ~~~l~dr~G-Rr~~l~~-~~~~-~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~ 384 (447)
.+++.||.+ ||+.... .... ....+...... . +........+...++..+.....+.+..|.+|++.|+++.|+.
T Consensus 272 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 351 (379)
T TIGR00881 272 AGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFV 351 (379)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHH
Confidence 999999863 3333222 1111 11111111111 1 1111112222222233344445677899999999999999999
Q ss_pred HHHHhHhHhHHHHHHHHHHhhch
Q 013219 385 NAMGRIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 385 ~~~~~i~~~~~~~~~~~l~~~~~ 407 (447)
+..+.+++.++|.+.+.+.+..+
T Consensus 352 ~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 352 GFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred HHhhhhhhhhhhhhHHHHHHhhc
Confidence 99999999999999988877654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=194.63 Aligned_cols=308 Identities=19% Similarity=0.232 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHHhhccccccccc--CCCcchhHHHHH-----HHHHHhHhhhHHHHhhhhhCCcc---------------
Q 013219 34 WVAEAMEIMILSFVGPTVKSEWN--LSSTEESLITTS-----VFAGLVVGAYAWGLVADNYGRSG--------------- 91 (447)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~i~s~-----~~~G~~iG~l~~G~l~Dr~GRr~--------------- 91 (447)
.+.|++|++.+++..+.+.+++. .++.+.+.+.+. .+++..+|+++.|+++||+|||.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 81 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL 81 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 35789999999999888887754 455555554443 34455679999999999999990
Q ss_pred ---------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc-----
Q 013219 92 ---------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM----- 133 (447)
Q Consensus 92 ---------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~----- 133 (447)
+....++.|+.|+++||+..+..+.+..+|.++++.+...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~ 161 (394)
T TIGR00883 82 IGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGD 161 (394)
T ss_pred HhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 011234679999999999999999999999988877654431
Q ss_pred ---CCCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCC
Q 013219 134 ---PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 210 (447)
Q Consensus 134 ---~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (447)
...+||.++.+.+++.++..+....+||+|++...+++ .+ +
T Consensus 162 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~---------------~----- 205 (394)
T TIGR00883 162 DALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK----------------HK---------------K----- 205 (394)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------cc---------------c-----
Confidence 35689999999888877776667778998865311100 00 0
Q ss_pred cccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCCh
Q 013219 211 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA 290 (447)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 290 (447)
. + ...++.++++. ++........+.....++....+.+..... ..+.+..
T Consensus 206 -------------~---~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~ 255 (394)
T TIGR00883 206 -------------K---R---GPIRETLTKHR-KPFLLGLGLVIATTTTFYLITTYLPTYLTQ----------TLGLSAN 255 (394)
T ss_pred -------------c---c---CCHHHHHHhch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCChh
Confidence 0 0 01122332222 222333333333333344333333322210 0011111
Q ss_pred hhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH--HHHHHh-hhh-hHHHHHHHHHHHHHhhhhhhhHh
Q 013219 291 NLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL--LPLVTY-QSN-ILTTGLLFGARMCVMGAFTVSLI 366 (447)
Q Consensus 291 ~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~--~~l~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~ 366 (447)
.......+..+..+++.++.+++.||+|||+.+.....++.+.. ...... .+. .......+...++.....+....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 335 (394)
T TIGR00883 256 SALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGS 335 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHH
Confidence 22222344566778888999999999999997765443333222 111121 111 11112222222222334456788
Q ss_pred hccccCCcchhhhHhhHHHHHH-hHhHhHHHHHHHHHHhhch
Q 013219 367 YAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 367 ~~~ElfP~~~R~~~~g~~~~~~-~i~~~~~~~~~~~l~~~~~ 407 (447)
+.+|.+|.+.|+++.++.+..+ .+++.++|.+.+.+.+..+
T Consensus 336 ~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 336 FLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 9999999999999999865554 4678899999888877655
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=185.83 Aligned_cols=299 Identities=16% Similarity=0.068 Sum_probs=183.2
Q ss_pred ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch--------------------------------------
Q 013219 51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH-------------------------------------- 92 (447)
Q Consensus 51 ~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~-------------------------------------- 92 (447)
+++++|+|+.+.|++.+++.+++.++++++|+++||+|||..
T Consensus 42 l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 121 (392)
T PRK12382 42 VHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLI 121 (392)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHH
Confidence 567899999999999999999999999999999999999910
Q ss_pred ----------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCC
Q 013219 93 ----------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 162 (447)
Q Consensus 93 ----------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpES 162 (447)
....+..|+.|+++|+++.+..+.+...|..+++.++..+....+||..+.+..+..++........||+
T Consensus 122 ~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (392)
T PRK12382 122 LGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKV 201 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCC
Confidence 0011335999999999999999999999999988887776667899998777655544443333333332
Q ss_pred hHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhh
Q 013219 163 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 242 (447)
Q Consensus 163 P~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (447)
|.- + + + ++..++..+.+++
T Consensus 202 ~~~--------~------------~-----------------~---------------------~~~~~~~~~~~~~--- 220 (392)
T PRK12382 202 PAH--------A------------G-----------------E---------------------RPSLWSVVGLIWK--- 220 (392)
T ss_pred CCC--------c------------c-----------------c---------------------CchHHHHHHHHHH---
Confidence 210 0 0 0 0000001111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHH
Q 013219 243 ARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLS 322 (447)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~ 322 (447)
.....+ .. .+.+.....+.+...... +.... ........+..+++.++.+++.||+|||+.
T Consensus 221 -~~~~~~-l~----~~~~~~~~~~~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 281 (392)
T PRK12382 221 -PGLGLA-LQ----GVGFAVIGTFVSLYFASK-----------GWAMA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKV 281 (392)
T ss_pred -hHHHHH-HH----HHHHhHHHHHHHHHHHhc-----------CCchh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 111111 10 111111111111111000 01111 112233455667788999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHH
Q 013219 323 ITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVAL 402 (447)
Q Consensus 323 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l 402 (447)
+..+.....+....+....+........+...++.....+.......|.+|.+.|+++.|+.+....+++.++|.+.+.+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l 361 (392)
T PRK12382 282 AIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGML 361 (392)
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666554444433333322222122122222222222344556778999999999999999999999999999999888
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 403 VANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
.+..+....+.+.+.+.+++.+..++.
T Consensus 362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 362 ATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 777665566667777766666655543
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-21 Score=183.87 Aligned_cols=306 Identities=26% Similarity=0.356 Sum_probs=213.4
Q ss_pred HhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------------
Q 013219 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------- 90 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------- 90 (447)
+.++.+.+..+....+...|.+.++++.++.+.+++.+...++..+++++.|+++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~ 83 (352)
T cd06174 4 LFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAF 83 (352)
T ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHH
Confidence 3455667777777788888888899999999999999999999999999999999999999
Q ss_pred ---------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHH
Q 013219 91 ---------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 149 (447)
Q Consensus 91 ---------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~ 149 (447)
.+....++.|+.|+++|++..+..+....+|..+++.++..+.+..+||..+.+.+++.
T Consensus 84 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (352)
T cd06174 84 ASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILG 163 (352)
T ss_pred hccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12233466799999999999999999999999999988877766678999999988887
Q ss_pred HHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCc
Q 013219 150 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 229 (447)
Q Consensus 150 ~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
++..+...++| |+..
T Consensus 164 ~~~~~~~~~~~--~~~~--------------------------------------------------------------- 178 (352)
T cd06174 164 LLLALLLLFLL--RLLL--------------------------------------------------------------- 178 (352)
T ss_pred HHHHHHHHHHH--HHHH---------------------------------------------------------------
Confidence 77666555544 0000
Q ss_pred hhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHH
Q 013219 230 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 309 (447)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~ 309 (447)
......+.....+.....+.+..... ..+.+.........+..+..+++.++
T Consensus 179 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~ 230 (352)
T cd06174 179 ------------------LLALAFFLLSFGYYGLLTYLPLYLQE----------VLGLSAAEAGLLLSLFGLGGILGALL 230 (352)
T ss_pred ------------------HHHHHHHHHHhHHHHHHHHHHHHHHH----------hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111111111111111211100 00111122223345567788889999
Q ss_pred HHHHHhhhChhH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHH
Q 013219 310 AAILVDTAGRKL-SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG 388 (447)
Q Consensus 310 ~~~l~dr~GRr~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~ 388 (447)
.+++.||+|||+ .+..+..+..+..+......+........+...++.....+....+..|..|.+.|++..|+.+...
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (352)
T cd06174 231 GGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFG 310 (352)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 999999999999 8777776666655544443332222222222333333445678899999999999999999999999
Q ss_pred hHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 013219 389 RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML 428 (447)
Q Consensus 389 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 428 (447)
++++.++|.+.+.+.+..+....+.+.+++.+++.+..++
T Consensus 311 ~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 311 SLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 9999999999988876655556677777777776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-20 Score=183.45 Aligned_cols=316 Identities=14% Similarity=0.074 Sum_probs=186.9
Q ss_pred HHHHHHHHHhhcc-cccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc------------------------
Q 013219 37 EAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------------ 91 (447)
Q Consensus 37 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------------ 91 (447)
..+.........| .+++++|+++.+.|++.+++.++..+.+++.|+++||+|||.
T Consensus 9 ~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (375)
T TIGR00899 9 TGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYF 88 (375)
T ss_pred HHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3333333333333 357889999999999999999999999999999999999871
Q ss_pred -----------------hhhhhhhhcccCCCCchhH--HHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH
Q 013219 92 -----------------HVFLSWFLEFVPPSNRGMW--MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 152 (447)
Q Consensus 92 -----------------~~~~~~~~E~~p~~~Rg~~--~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~ 152 (447)
+....+..|+.|++.|++. .+..+.+.++|..+++.++..+....+||+.+++.+++.++.
T Consensus 89 ~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~ 168 (375)
T TIGR00899 89 LLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLC 168 (375)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 1112234588888877754 567777888898888887777666789999999988877665
Q ss_pred HHH-hhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchh
Q 013219 153 LAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGL 231 (447)
Q Consensus 153 ~~~-~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (447)
.+. .+++||+|++...+ + + + .
T Consensus 169 ~~~~~~~~~~~~~~~~~~------------------~-------------~--~------------------~------- 190 (375)
T TIGR00899 169 GVLVWLFLPSYPRGAPGA------------------L-------------T--R------------------L------- 190 (375)
T ss_pred HHHHHHhCCCcccCcccc------------------c-------------C--c------------------c-------
Confidence 444 45689987531000 0 0 0 0
Q ss_pred HHHHhhcchhhhhHHHH-HHHHHHHHHHHHHH-HHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHH
Q 013219 232 SLFLMLFSSKLARTTIL-LWLLLFGNSFAYYA-VVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 309 (447)
Q Consensus 232 ~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~y~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~ 309 (447)
+.++.++++..+.... ....+.......+. ..+..... +.+.........+.....+++.++
T Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------g~~~~~~g~~~~~~~~~~~~~~~~ 254 (375)
T TIGR00899 191 -EVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHEL---------------GLPDKLAGLMMGTAAGLEIPFMLL 254 (375)
T ss_pred -hhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHc---------------CCCHHHHHHHHHHHHHHHHHHHHh
Confidence 0001122222121111 11222211111111 11111111 111111111122333455677889
Q ss_pred HHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHh
Q 013219 310 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR 389 (447)
Q Consensus 310 ~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~ 389 (447)
++++.||+|||+.+..+.....+....+....+.+......+...++.....+....+..|.+|.+ |+++.++.+...+
T Consensus 255 ~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 333 (375)
T TIGR00899 255 AGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGR 333 (375)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHH
Confidence 999999999999887666554444333332222222111111122222223345567888999986 4599999999999
Q ss_pred HhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 013219 390 IGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 427 (447)
Q Consensus 390 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~ 427 (447)
+++.++|.+.+.+.+..+....+.+.+++.+++.+...
T Consensus 334 ~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~ 371 (375)
T TIGR00899 334 VGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL 371 (375)
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence 99999999998877765555556666666666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-20 Score=180.82 Aligned_cols=296 Identities=15% Similarity=0.178 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------------
Q 013219 35 VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------------ 90 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------------ 90 (447)
+.............|.+.+++++++.+.+++.+++.+|..+++++.|+++||+|||
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 94 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94 (385)
T ss_pred HHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH
Confidence 44445555555667888999999999999999999999999999999999999999
Q ss_pred ----------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-
Q 013219 91 ----------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL- 153 (447)
Q Consensus 91 ----------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~- 153 (447)
.+....++.|+.|+++|++..+..+....+|..+++.++..+....+||..+.+.++..++..
T Consensus 95 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 174 (385)
T TIGR00710 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSA 174 (385)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 122234567999999999999999999999999888877766666899999998777666554
Q ss_pred HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHH
Q 013219 154 AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSL 233 (447)
Q Consensus 154 ~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (447)
+..+++||+++.. .+ ++. ++....
T Consensus 175 ~~~~~~~~~~~~~---~~-~~~----------------------------------------------------~~~~~~ 198 (385)
T TIGR00710 175 LIFFILPETLPYE---AR-IQI----------------------------------------------------STYFET 198 (385)
T ss_pred HHHHhCCCCCCCc---cc-CCH----------------------------------------------------HHHHHH
Confidence 3345667765310 00 000 000112
Q ss_pred HHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 013219 234 FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAIL 313 (447)
Q Consensus 234 ~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l 313 (447)
.+++++++......+... .....++....+.+..... ..+.+............+..+++.++.+++
T Consensus 199 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l 265 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYG---ASFGGFFAFFSGAPFVYID----------IMGVSPSVFGLLFALNIIAMIFGGFLNGRF 265 (385)
T ss_pred HHHHHcCchhHHHHHHHH---HHHHHHHHHHHcChHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333343332222111111 1111122221111211100 001111111122334466778899999999
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHh---h-hhhHHHH-HHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHH
Q 013219 314 VDTAGRKLSITIMFTLSCLFLLPLVTY---Q-SNILTTG-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG 388 (447)
Q Consensus 314 ~dr~GRr~~l~~~~~~~~~~~~~l~~~---~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~ 388 (447)
.||+|||+.+..+.....+....+... . ....... ..+...+......+....+..|.+| +.|+++.++.+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~ 344 (385)
T TIGR00710 266 IKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLR 344 (385)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHH
Confidence 999999988776655444333222221 1 1111111 1111212222334456678889888 56999999999888
Q ss_pred hHhHhHHHHHHH
Q 013219 389 RIGGMVCPLVAV 400 (447)
Q Consensus 389 ~i~~~~~~~~~~ 400 (447)
..++.+.+.+.+
T Consensus 345 ~~~g~i~~~~~~ 356 (385)
T TIGR00710 345 LVLGAIVGYLVS 356 (385)
T ss_pred HHHHHHHHHHHH
Confidence 875555555555
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-19 Score=178.53 Aligned_cols=142 Identities=11% Similarity=0.078 Sum_probs=109.0
Q ss_pred hHHHHHHHHHhhHH-HHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------
Q 013219 21 KYQCFVLAYAGLGW-VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------- 90 (447)
Q Consensus 21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------- 90 (447)
|.+|+.+..+.++. .....+....+ ..|.+.++++.++++.++..++..++..+++++.|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~ 94 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVS-LLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVL 94 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 33666544444443 33333333333 45778899999999999999999999999999999999999999
Q ss_pred -------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCch
Q 013219 91 -------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 139 (447)
Q Consensus 91 -------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR 139 (447)
.+....++.|++|+++|++..+......++|.++++.++..+...++||
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~ 174 (394)
T PRK10213 95 LTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWR 174 (394)
T ss_pred HHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHH
Confidence 1333445679999999999999999999999999999888877778999
Q ss_pred HHHHhhhHHHHHHHHH-hhcccCCh
Q 013219 140 WLLGLSSIPSFILLAF-LGFQPESP 163 (447)
Q Consensus 140 ~~~~~~~i~~~i~~~~-~~~lpESP 163 (447)
+.|++.++.+++..+. ...+||+|
T Consensus 175 ~~f~~~~~l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 175 NVFNAAAVMGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 9999877766554333 34467754
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-20 Score=181.09 Aligned_cols=306 Identities=15% Similarity=0.059 Sum_probs=190.3
Q ss_pred HHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------------
Q 013219 35 VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------- 91 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------- 91 (447)
+.............|.+..+++.++.+.+++.++..++.++++++.|+++||+|||.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 88 (365)
T TIGR00900 9 LISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG 88 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334444444555667777888999999999999999999999999999999999990
Q ss_pred ----------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHH
Q 013219 92 ----------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 149 (447)
Q Consensus 92 ----------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~ 149 (447)
+...+++.|+.|+++|++..+..+.+..+|.++++.++..+....+||..+++.++..
T Consensus 89 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~ 168 (365)
T TIGR00900 89 GLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGF 168 (365)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1122355699999999999999999999999999888777666789999999887766
Q ss_pred HHHHHHhhc--ccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCC
Q 013219 150 FILLAFLGF--QPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 227 (447)
Q Consensus 150 ~i~~~~~~~--lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (447)
++..+..+. .||.++- .+.+. ++ +..
T Consensus 169 ~~~~~~~~~~~~~~~~~~----~~~~~-----------------------------~~-------------------~~~ 196 (365)
T TIGR00900 169 AISALLIVSVRIPELAAS----EIQAL-----------------------------SN-------------------AVL 196 (365)
T ss_pred HHHHHHHHhcccccCCCc----ccccc-----------------------------ch-------------------hHH
Confidence 665444332 2332210 00000 00 000
Q ss_pred CchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhH
Q 013219 228 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 306 (447)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g 306 (447)
++....++.+++++..+......... ...+++.. .+.|..... ..+.+.........+..+..+++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 263 (365)
T TIGR00900 197 RDTREGIKFVLKNPLLRTLLLLALLF---NLVFAPAIVALFPYVQSK----------YLGRGSTHYGWVLAAFGLGALLG 263 (365)
T ss_pred HHHHhHHHHHHcCcHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHH----------HhCCchHHHHHHHHHHHHHHHHH
Confidence 00011233444444333322222111 11111111 112211100 00111112222234456677888
Q ss_pred HHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHH
Q 013219 307 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAAN 385 (447)
Q Consensus 307 ~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~ 385 (447)
.++.+++.||.|||+.+..+...+++.+..+....+ .....+..+...++.....+....+..|..|.+.|+++.|+.+
T Consensus 264 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 343 (365)
T TIGR00900 264 ALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQF 343 (365)
T ss_pred HHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 899999999999999887766655555444443322 2211222222222223334567789999999999999999999
Q ss_pred HHHhHhHhHHHHHHHHHHhh
Q 013219 386 AMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 386 ~~~~i~~~~~~~~~~~l~~~ 405 (447)
....+++.++|.+.+.+.+.
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~ 363 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADH 363 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988877654
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-20 Score=187.22 Aligned_cols=344 Identities=14% Similarity=0.116 Sum_probs=209.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------
Q 013219 25 FVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------- 90 (447)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------- 90 (447)
++++.+.++.+...+|....+...|.+.+++|.+.++.+++.+++.++..++.++.|+++||+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGS 81 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999999999999999999999999999
Q ss_pred --------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHh
Q 013219 91 --------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL 144 (447)
Q Consensus 91 --------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~ 144 (447)
.+....++.|+.|+++||+..++.+....+|..+++.++..+..+.+||+.+++
T Consensus 82 ~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~ 161 (485)
T TIGR00711 82 LLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLI 161 (485)
T ss_pred HHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhh
Confidence 123345678999999999999999999999999988888777778899999999
Q ss_pred hhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHH-------HHHHcCCCCCCCccccccccCCCCCCCCCcccc--
Q 013219 145 SSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEK-------IAQVNKTKLPNGKLVARRSTLPTGERAPPELVH-- 214 (447)
Q Consensus 145 ~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (447)
.+++.++.. +..+++||+++ ..+++.|.....+.. .....+++.... ++.+...
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~ 225 (485)
T TIGR00711 162 NVPIGIIVVVVAFFILPRDKP--AASENFDFLGLLLLSVGLGSLLYGLSEGPERGWF--------------DSNEILILS 225 (485)
T ss_pred hhHHHHHHHHHHHHHcCCccc--cccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCC--------------CchHHHHHH
Confidence 887766654 44556787654 122222221111100 000001000000 0000000
Q ss_pred -----------cccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcc
Q 013219 215 -----------LLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMF 283 (447)
Q Consensus 215 -----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~ 283 (447)
..+.. . ++ +..+. ++++++......+ ..+...+.+++...+.|.....
T Consensus 226 ~~~~~~~~~~~~~~~~----~-~~--~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~---------- 284 (485)
T TIGR00711 226 ITGLVAIIAFVVWELT----D-DN--PLVDL-RLFKYRNFTIGCV---YMSLLGLGLYGSFYLLPLYLQQ---------- 284 (485)
T ss_pred HHHHHHHHHHHHHHHc----C-CC--CccCH-HHHcCCChHHHHH---HHHHHHHHHHHHHHHHHHHHHH----------
Confidence 00000 0 00 00011 2344332222211 1222223333333333322110
Q ss_pred cCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH--h-hhhhH-HHHHHHHHHHHHhh
Q 013219 284 SHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--Y-QSNIL-TTGLLFGARMCVMG 359 (447)
Q Consensus 284 ~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~--~-~~~~~-~~~~~~~~~~~~~~ 359 (447)
..+.+............+..+++.++++++.||+|||+.+..+..+..+....+.. . ..... .....+...++...
T Consensus 285 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~ 364 (485)
T TIGR00711 285 VLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGC 364 (485)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 01111122223334456778889999999999999999887777665555444331 1 11111 11111122222222
Q ss_pred hhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 360 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 360 ~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
.+........|.+|.+.|+++.|+.+....+++.+++.+.+.+.++
T Consensus 365 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 365 FFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445566888999999999999999999999999888766553
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-19 Score=182.00 Aligned_cols=328 Identities=16% Similarity=0.128 Sum_probs=199.1
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-----CCcc---------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRSG--------------- 91 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-----GRr~--------------- 91 (447)
...+..+......+...|..-++.|.+.++.+.+ ++....+ ++.+++|+++||+ |||.
T Consensus 19 ~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~ 96 (491)
T PRK11010 19 ILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIA 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHH
Confidence 3345666666677777788878888888888876 3333343 6899999999999 9981
Q ss_pred -----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC-CCCchHH
Q 013219 92 -----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWL 141 (447)
Q Consensus 92 -----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~-~~~WR~~ 141 (447)
+...++..|++|+++||+..++.+.++.+|.++++.+...+.. ..|||..
T Consensus 97 ~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~ 176 (491)
T PRK11010 97 AMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGM 176 (491)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 1112345699999999999999999999999998887776665 4699999
Q ss_pred HHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCC
Q 013219 142 LGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 221 (447)
Q Consensus 142 ~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (447)
|++.++..++..+..+++||+|+.. + +.++.+
T Consensus 177 f~i~a~l~ll~~l~~~~~~e~~~~~--~-~~~~~~--------------------------------------------- 208 (491)
T PRK11010 177 YWLMAALLIPCIIATLLAPEPTDTI--P-VPKTLE--------------------------------------------- 208 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcccc--c-cccchh---------------------------------------------
Confidence 9998887777766666689876420 0 000000
Q ss_pred CCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhcccccccCCCcccCCCCChhhHHHH-HHH
Q 013219 222 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLL-ISELSSLDTRCRSPLMFSHHPQDANLYIDE-FIT 299 (447)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~ 299 (447)
++...+++++++++.....++...... ...+....+ .+.+... .+.+........ .+.
T Consensus 209 ------~~~~~~l~~~~~~~~~~~~ll~~~l~~---~~~~~~~~~~~~~l~~~-----------~G~s~~~~g~~~~~~g 268 (491)
T PRK11010 209 ------QAVVAPLRDFFGRNNAWLILLLIVLYK---LGDAFAMSLTTTFLIRG-----------VGFDAGEVGLVNKTLG 268 (491)
T ss_pred ------hhHHHHHHHHHcCcCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHH
Confidence 000113344454333222222222111 111111111 1111100 111112211111 233
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH---HHHhhhhhHH-HHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP---LVTYQSNILT-TGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~---l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.++.++|.+++++++||+|||+.+.++.++..+..+. +.....+... ...++...++.....+..+.+..++.|.+
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~ 348 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKS 348 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4577889999999999999988776544433332211 1221112111 11111111111112345678888999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
.+++..|+.+....+++.+.+.+.+++.+..+....|.+.+++++++.+..+++
T Consensus 349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888888888887665555666667777776666655
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-19 Score=176.75 Aligned_cols=333 Identities=13% Similarity=-0.035 Sum_probs=193.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------
Q 013219 21 KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------- 90 (447)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------- 90 (447)
+--++..+.+.++.+...++...+....|.+.+++++++.+.++..+++.+++.+++++.|+++||+|||
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 88 (406)
T PRK15402 9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFF 88 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4445556666677777777777677777888899999999999999999999999999999999999999
Q ss_pred ------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchH
Q 013219 91 ------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRW 140 (447)
Q Consensus 91 ------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~ 140 (447)
.+....++.|+.|+++|++..+..+....+|..+++.++..+..+.+||+
T Consensus 89 ~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~ 168 (406)
T PRK15402 89 ILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRG 168 (406)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccH
Confidence 12233456799999999998888888888888888777666656679999
Q ss_pred HHHhhhHHHHHHHH-HhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCC
Q 013219 141 LLGLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSN 219 (447)
Q Consensus 141 ~~~~~~i~~~i~~~-~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (447)
.+++.++..++..+ ..+.+||+++.. ++.++ .
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~------------------------------------------- 201 (406)
T PRK15402 169 MFVLFAALAALSFFGLWRAMPETAGRV---GEKLS-L------------------------------------------- 201 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCccc---ccccc-H-------------------------------------------
Confidence 99987777666544 345678875320 00000 0
Q ss_pred CCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHH
Q 013219 220 GGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFIT 299 (447)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 299 (447)
++...+++.+++++......+. .+.....++....+.|.+... ..+.+...........
T Consensus 202 --------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~----------~~g~~~~~~g~~~~~~ 260 (406)
T PRK15402 202 --------KELGRDYKLVLKNRRFVAGALA---LGLVSLPLLAWIALSPVILIS----------GEQLSSYEYGLLQVPV 260 (406)
T ss_pred --------HHHHHHHHHHHcCcHHHHHHHH---HHHHHHHHHHHHHHhHHHHHH----------HhCCCHHHHHHHHHHH
Confidence 0001123334443322211111 111111111111112211100 0011111111112223
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh----hhhh-HHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
....+++.++.+++.||+|||+.+..+.....+....+... .... ......+...+......+......... +.
T Consensus 261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~ 339 (406)
T PRK15402 261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SD 339 (406)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cc
Confidence 44567788999999999999998877665444333332221 1111 111111111111111122222222222 34
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTS 422 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~ 422 (447)
+.|++..++.+....++..+++.+...+.+..+.....+..++..++.
T Consensus 340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 889999999999999999899988877655544333233333333333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-19 Score=175.31 Aligned_cols=343 Identities=14% Similarity=0.088 Sum_probs=194.6
Q ss_pred HHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc--
Q 013219 14 LTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG-- 91 (447)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~-- 91 (447)
++++|..|--....+...+..+.++... ++..| +.+++++++.+.+++.+.+.+++.+++++.|+++||+|||.
T Consensus 6 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l 81 (402)
T TIGR00897 6 LQKIGIPLNLLWGYIGVVVFMTGDGLEQ---GWLSP-FLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTM 81 (402)
T ss_pred HHHcCCCchhhHHHHHHHHHHHhhhhHH---HhHHH-HHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 4566766666555555444444444333 33334 44778999999999999999999999999999999999990
Q ss_pred ------------------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhh-HHHHHH
Q 013219 92 ------------------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIG 128 (447)
Q Consensus 92 ------------------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~-l~~~~~ 128 (447)
+....++.|+.|+++||+..+..+...++|. ++++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~ 161 (402)
T TIGR00897 82 MIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYY 161 (402)
T ss_pred HHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011234588999999999999999999996 566766
Q ss_pred HHHHcCCCCchHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCC
Q 013219 129 AWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGER 207 (447)
Q Consensus 129 ~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
+..+.+..+|+..++......++. .+..++++|.|+ +++. + ++
T Consensus 162 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~--------------------------~-~~-- 205 (402)
T TIGR00897 162 SSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------PQHM--------------------------Q-TR-- 205 (402)
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------cccc--------------------------c-CC--
Confidence 655555678655444332222221 222223333210 0000 0 00
Q ss_pred CCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCC
Q 013219 208 APPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHP 287 (447)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~ 287 (447)
+ +. ++..+.++.+++++. ........+.+...+++...+.|..... .+.
T Consensus 206 ---~-----------~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~g~ 254 (402)
T TIGR00897 206 ---E-----------KF---SELGKAATILFTNPN---VLLGGMVRIINTIGLFGFAVFLPMFVAE-----------LGF 254 (402)
T ss_pred ---c-----------ch---hhHHHHHHHHHcChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCC
Confidence 0 00 000112334444432 2222223333444555555555533211 011
Q ss_pred CChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH-HHHHHHHHHHHHHHH-h----hhhhHHHHHHHHHHHHHhhhh
Q 013219 288 QDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT-IMFTLSCLFLLPLVT-Y----QSNILTTGLLFGARMCVMGAF 361 (447)
Q Consensus 288 ~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~-~~~~~~~~~~~~l~~-~----~~~~~~~~~~~~~~~~~~~~~ 361 (447)
+.........+..+..+++.++.++++||+|||+.+. .+...+.+....+.. . .+........+...++..+ .
T Consensus 255 s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~-~ 333 (402)
T TIGR00897 255 STSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAG-Y 333 (402)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHH-H
Confidence 1111122223446678889999999999999887653 222222222112111 1 1111111111122222222 2
Q ss_pred hhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 362 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 362 ~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
........|..|. .|+++.|+.+....+++.++|.+.+.+.+..+....+++.+++.+++.+...+.
T Consensus 334 ~~~~~~~~~~~~~-~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 334 VPLAAVFPTLAPK-HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHHHHhhCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 2234455787665 799999999999999999999999888887666666777777776766655543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-19 Score=169.43 Aligned_cols=331 Identities=17% Similarity=0.147 Sum_probs=212.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------- 90 (447)
+..++.+.++-|.-+.+-+...-..|++.+|+++|..+.|+..|++.+|..+|+++...+.||+-||
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~ 91 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVS 91 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence 3334444444555555556667778999999999999999999999999999999999999999999
Q ss_pred ---------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHH
Q 013219 91 ---------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLG 143 (447)
Q Consensus 91 ---------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~ 143 (447)
.++..+...+..||++|+++.++...+.+++.+++.+++.++...+|||..|+
T Consensus 92 n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 92 NLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 12233456799999999999999999999999999999999888899999999
Q ss_pred hhhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCC
Q 013219 144 LSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 222 (447)
Q Consensus 144 ~~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
.-+..+++.+ .....+| |+-. .+. +
T Consensus 172 ~ia~l~ll~~~~~~~~lP--~~~~--------------------~~~-~------------------------------- 197 (394)
T COG2814 172 AIAVLALLALLLLWKLLP--PSEI--------------------SGS-L------------------------------- 197 (394)
T ss_pred HHHHHHHHHHHHHHHhCC--CccC--------------------CCC-C-------------------------------
Confidence 8888877764 4466778 3200 000 0
Q ss_pred CCcCCCchhHHHHhhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHh
Q 013219 223 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL 301 (447)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 301 (447)
+....+..++++++.....++...+++ +++..|-. ..|.+.+. .+.+....-...++.++
T Consensus 198 -----~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftY---i~P~L~~v-----------~g~s~~~vs~~Ll~~Gv 258 (394)
T COG2814 198 -----PGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTY---IRPFLESV-----------AGFSVSAVSLVLLAFGI 258 (394)
T ss_pred -----CcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHh---HHHHHHHc-----------cCCCHhHHHHHHHHHHH
Confidence 000011223444444333333333333 23222211 12333211 01112222334566788
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhH
Q 013219 302 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 380 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~ 380 (447)
..++|++++|++.|| +.|+.+........+.++.+.+. .+.....+.++...+.............+| .-++.++.+
T Consensus 259 ~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a 336 (394)
T COG2814 259 AGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLA 336 (394)
T ss_pred HHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHH
Confidence 889999999999999 77777666555444444443332 222222222222222222111233455556 556889999
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 381 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 381 ~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
.++.....+++..++..+.+.++++.+.....+.-+...+++.++....
T Consensus 337 ~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 337 GSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888887554444555555556665555443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-19 Score=178.66 Aligned_cols=353 Identities=14% Similarity=0.075 Sum_probs=201.3
Q ss_pred HHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------
Q 013219 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------------- 90 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------------- 90 (447)
+.++.++++.+.+|...++...|.+.+++|+++.+.+++.+.+.++..++.+++|+++||+|||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 91 (471)
T PRK10504 12 LWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF 91 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3445577888999998888899999999999999999999999999999999999999999999
Q ss_pred ------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhh
Q 013219 91 ------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146 (447)
Q Consensus 91 ------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~ 146 (447)
.+...+++.|+.|+++|++..+..+...++|..+++.++..+..+.+||+.|.+..
T Consensus 92 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~ 171 (471)
T PRK10504 92 CALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINI 171 (471)
T ss_pred HHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHH
Confidence 12233456799999999999999999999999998888777667789999999876
Q ss_pred HHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHH------HHHcCCCC-CCCccccccccCCCCCCCCCcccccccC
Q 013219 147 IPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKI------AQVNKTKL-PNGKLVARRSTLPTGERAPPELVHLLSS 218 (447)
Q Consensus 147 i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
....+.. ......|+++. .+.|.+.+.....-. ...++.+. ....... ...--...-.-.....++
T Consensus 172 ~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 245 (471)
T PRK10504 172 PVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAI---AGLVAVGVVALLLYLLHA 245 (471)
T ss_pred HHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHH---HHHHHHHHHHHHHHHHHH
Confidence 6555443 33445566542 222322221111000 00000000 0000000 000000000000000000
Q ss_pred CCCCCCcCCCchhHHHHhhcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHH
Q 013219 219 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWL-LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 297 (447)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (447)
. + ..++ ..+. ++++++..+..+...+ ..+.....++....+.... .+.+.........
T Consensus 246 ~-~--~~~~---~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~~~~~~g~~~~ 304 (471)
T PRK10504 246 R-N--NNRA---LFSL-KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIG--------------LGFSPFHAGLMMI 304 (471)
T ss_pred h-c--CCCC---ccCH-HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------cCCCHHHHHHHHH
Confidence 0 0 0000 0011 2455544333322222 1222211111111111110 0111112122233
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh--hhhH-HHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
...+..+++..+.+++.||+|||+.+..+..+..+....+.... .... .....+....+....++....+..+..|.
T Consensus 305 ~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 384 (471)
T PRK10504 305 PMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPD 384 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 33445566668899999999999998877665555444333321 1111 11111122122222344566788899999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANC 406 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~ 406 (447)
+.|+++.++.++...+++.+++.+.+.+++..
T Consensus 385 ~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 385 NLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998887666543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-19 Score=183.07 Aligned_cols=356 Identities=15% Similarity=0.084 Sum_probs=205.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------
Q 013219 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------- 91 (447)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------- 91 (447)
+|.+++.++++.+....|....+.+.|.+.+++|.+.++.+|+.+++.++..++.+++|+++||+|||.
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466788888999999999999999999999999999999999999999999999999999999999990
Q ss_pred -----------------------------hhhhhhhhcc-cCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHH
Q 013219 92 -----------------------------HVFLSWFLEF-VPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWL 141 (447)
Q Consensus 92 -----------------------------~~~~~~~~E~-~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~ 141 (447)
+.....+.+. .|+++|++..++....+.+|..+++.++..+.++.+||+.
T Consensus 84 ~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~ 163 (495)
T PRK14995 84 ASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSV 163 (495)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHH
Confidence 1111123344 5789999999999999999999999998888888899999
Q ss_pred HHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHH------HHHH-HcCCCCCCCccccccccCCCCCCCCCccc
Q 013219 142 LGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALE------KIAQ-VNKTKLPNGKLVARRSTLPTGERAPPELV 213 (447)
Q Consensus 142 ~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (447)
|++.....++. .+..+++||+|.- .+++.|.....+. .... .+..+......... -.-.-....-. .-
T Consensus 164 f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~-~f 239 (495)
T PRK14995 164 FLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTS-LTLLTGALLLG-LF 239 (495)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHH-HHHHHHHHHHH-HH
Confidence 99876655554 3445678988742 1111111111000 0000 00000000000000 00000000000 00
Q ss_pred ccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhH
Q 013219 214 HLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 293 (447)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
...+ .+. +.+.-+ .++++++...... ...+.....+++...+.+..... ..+.+.....
T Consensus 240 ~~~e----~~~---~~p~~~-~~lf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~lq~----------v~g~s~~~ag 298 (495)
T PRK14995 240 IRTQ----LAA---SRPMID-MRLFTHRIILSGV---VMAMTAMITLVGFELLMAQELQF----------VHGLSPLEAG 298 (495)
T ss_pred HHHH----hcC---CCCCcC-HHHhCCcccHHHH---HHHHHHHHHHHHHHHHHHHHHHH----------HcCCCHHHHH
Confidence 0000 000 000001 1244443322221 11222222233333233311100 0111112222
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---QSNILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
.......+...++..+.+++.||+|||+.+..+.....+....+... .+........+...+......+.......+
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~ 378 (495)
T PRK14995 299 MFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMA 378 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 23344456677888999999999999988777666554443333221 111111112222222222223345666778
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
..|.+.++.+.++.+....+++.+++.+.+.+.
T Consensus 379 ~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 379 AAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred cCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999998888887666554
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-18 Score=172.77 Aligned_cols=119 Identities=18% Similarity=0.206 Sum_probs=98.8
Q ss_pred HhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------------------------
Q 013219 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------------------------------- 90 (447)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------------------------------- 90 (447)
....|.+.++++.++.+.+++.+.+.+|..+++++.|+++||+|||
T Consensus 23 ~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g 102 (392)
T PRK10473 23 LVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQG 102 (392)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999
Q ss_pred ------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-HHhhcccCCh
Q 013219 91 ------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESP 163 (447)
Q Consensus 91 ------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP 163 (447)
.+....++.|+.|+++|++..+..+....+|..+++.++..+....+||..+.+.++..++.. +..+++||++
T Consensus 103 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 103 IGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred hhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 112234567999999999999999999999988888887766666799999998877666554 3456678864
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.3e-20 Score=178.98 Aligned_cols=302 Identities=23% Similarity=0.325 Sum_probs=189.0
Q ss_pred hHHHHHHHHHHHHHhhcc-cccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------------
Q 013219 32 LGWVAEAMEIMILSFVGP-TVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------- 90 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------- 90 (447)
++.+....+........| .+.+++|.++.+.+++.++..++..+++++.|+++||+|||
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~ 82 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh
Confidence 445666777777777788 78899999999999999999999999999999999999999
Q ss_pred --------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHH
Q 013219 91 --------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 150 (447)
Q Consensus 91 --------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~ 150 (447)
.+....++.|+.|+++|++..+..+.+..+|.++++.++..+....+||..+++.++..+
T Consensus 83 ~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~ 162 (352)
T PF07690_consen 83 SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSL 162 (352)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHH
T ss_pred hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhh
Confidence 112233567999999999999999999999999999888877777899999999988887
Q ss_pred HHHHH-hhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCc
Q 013219 151 ILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 229 (447)
Q Consensus 151 i~~~~-~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
+..+. ..++||+|.....+.+ . ++. ++.++
T Consensus 163 ~~~il~~~~~~~~~~~~~~~~~-----------------------------~--~~~------------------~~~~~ 193 (352)
T PF07690_consen 163 IAAILFILFLPEPPPPRERESP-----------------------------K--ESE------------------SKKPK 193 (352)
T ss_dssp HHHHHHHCCC---STTTT--SS-----------------------------T--TTT--------------------HHH
T ss_pred hhhhhHhhhhhhcccccccccc-----------------------------c--ccc------------------ccccc
Confidence 77553 3555555431100000 0 000 00000
Q ss_pred hhHH-HHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCCCcccCCCC-ChhhHHHHHHHHhhhhhH
Q 013219 230 GLSL-FLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLDTRCRSPLMFSHHPQ-DANLYIDEFITSLAEIPG 306 (447)
Q Consensus 230 ~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~g 306 (447)
.+.+ ++.+++++... .++...+...+.++....+.+.. ... .+.+ .........+..+..+++
T Consensus 194 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 194 PLKPGFKSLFKNPVLW---ILLIAFFLFFFVFSGFSFFLPLYLQEV-----------LGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp CCCH-CTHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHHHCCHH-----------HHCCTHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhh---hhhhhhhHHHHHHHHhhcccchhhhhc-----------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 0001 23333333222 12222222223333333333422 110 0111 112222234456667777
Q ss_pred HHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhH
Q 013219 307 LLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383 (447)
Q Consensus 307 ~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~ 383 (447)
.++.+++.||+|+|+..........+..+.+.. ..+........+...++.....+....+..|.+|++.|+++.|+
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 339 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGL 339 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999999999877665554443333332222 11222222222222233333456778999999999999999999
Q ss_pred HHHHHhHhHhHHH
Q 013219 384 ANAMGRIGGMVCP 396 (447)
Q Consensus 384 ~~~~~~i~~~~~~ 396 (447)
.+..+.+++.++|
T Consensus 340 ~~~~~~~~~~igP 352 (352)
T PF07690_consen 340 FNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC
Confidence 9999999998887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-20 Score=185.34 Aligned_cols=357 Identities=10% Similarity=0.006 Sum_probs=203.6
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc------
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------ 91 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------ 91 (447)
+-|.|.|.+++.+.+++.....+...++...|++.++++++.++.+++.+.+.++..++.++.|+++||+|||.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 34677888888888888877777777888889999999999999999999999999999999999999999990
Q ss_pred -----------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC
Q 013219 92 -----------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL 136 (447)
Q Consensus 92 -----------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~ 136 (447)
+....++.|+.| ++|++..++.+.+..+|..+++.+...+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~ 170 (455)
T TIGR00892 92 LLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF 170 (455)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 111123458886 78999999999999999988877766665667
Q ss_pred CchHHHHhhhHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCccccc
Q 013219 137 DWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHL 215 (447)
Q Consensus 137 ~WR~~~~~~~i~~~i~~~~~-~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (447)
+||+.|++.++..++..+.. +..|+.+.. .+.+.++ + ++. +.+ ... .+.+.
T Consensus 171 gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---------~~~--~~~---------~~~----~~~~~- 222 (455)
T TIGR00892 171 GWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---------EGL--PPD---------GST----KKLSK- 222 (455)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---------ccC--CCC---------Ccc----ccccc-
Confidence 99999999888776554333 333432211 0000000 0 000 000 000 00000
Q ss_pred ccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHH
Q 013219 216 LSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYID 295 (447)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (447)
+...++.+ ...+. ++++++. ........+...+.++....+.+..... .+.+.......
T Consensus 223 -----~~~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~l~~~~~~~~~~~l~~~~~~-----------~g~s~~~~g~~ 281 (455)
T TIGR00892 223 -----KSTAEKIN-RFLDF-SLFTHRG---FLVYLSGNVIMFLGFFAPIIFLVPYAKD-----------KGVDEYEAAFL 281 (455)
T ss_pred -----cchhhhhh-hhcch-HHhcCch---HHHHHHHHHHHHHHccchHHHHHHHHHH-----------cCCCHHHHHHH
Confidence 00000000 00011 2333322 1222122222223333333232221110 01111121222
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHH--HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTA--GRKLSITIM--FTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~--GRr~~l~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
..+.++..+++..+.+++.||. ++|+..... ....++..+......+.....+..+...++.....+..+.+..|.
T Consensus 282 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~ 361 (455)
T TIGR00892 282 LSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDL 361 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 3344666777788899999973 344333322 222222222222222222111112222222223334567888899
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHH
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSIL 424 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i 424 (447)
+|.+.|++++|+.+....++++++|.+.+.+.+..+ ....+.+.+++.+++.+
T Consensus 362 ~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 362 VGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred hhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999887766543 23344444444444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-18 Score=171.88 Aligned_cols=324 Identities=10% Similarity=0.096 Sum_probs=179.4
Q ss_pred HHHHHHHHHHHHh-hcccccccccCCCcchhHHHHHH-HHHHhHhhhHHHHhhhhhCCcc--------------------
Q 013219 34 WVAEAMEIMILSF-VGPTVKSEWNLSSTEESLITTSV-FAGLVVGAYAWGLVADNYGRSG-------------------- 91 (447)
Q Consensus 34 ~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~i~s~~-~~G~~iG~l~~G~l~Dr~GRr~-------------------- 91 (447)
.+........+.. ..+.+++++++++++.|++.+.. ..+++++.++.|+ +||+|||.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 102 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWN 102 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHh
Confidence 3444444333333 33446788999999999997654 5577788877777 99999981
Q ss_pred ---------------------hhhhhhhhcccCCCCc--hhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHH
Q 013219 92 ---------------------HVFLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148 (447)
Q Consensus 92 ---------------------~~~~~~~~E~~p~~~R--g~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~ 148 (447)
+....+..|+.|++.| +...+..+...++|.++++.++..+..+.|||..|++.++.
T Consensus 103 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~ 182 (393)
T PRK15011 103 RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVA 182 (393)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHH
Confidence 1111233477777666 44567888899999999988887776678999999988876
Q ss_pred HHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCC
Q 013219 149 SFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 227 (447)
Q Consensus 149 ~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (447)
.++.. +..+++||+|+- ++ ++. + +.+. . ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~---~~--~~~------------~-------------~~~~------------------~-~~ 213 (393)
T PRK15011 183 FIVCGVMVWLFLPSMRKE---LP--LAT------------G-------------TLEA------------------P-RR 213 (393)
T ss_pred HHHHHHHHHhhcCccCCC---Cc--ccc------------c-------------cccc------------------c-cc
Confidence 66554 445567887530 00 000 0 0000 0 00
Q ss_pred CchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHH
Q 013219 228 KSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL 307 (447)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~ 307 (447)
+ ++............+. .++....+.|..... ..+.+.........+..+..+++.
T Consensus 214 ~----------~~~~~~~~~~~~~~~~----~~~~~~~~~p~~l~~----------~~~~~~~~~g~~~~~~~~~~i~~~ 269 (393)
T PRK15011 214 N----------RRDTLLLFVICTLMWG----TNSLYIINMPLFIIN----------ELHLPEKLAGVMMGTAAGLEIPTM 269 (393)
T ss_pred c----------cccHHHHHHHHHHHHH----HHHHHHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0 0000111111111111 111111122211100 001111111111223345567788
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHH
Q 013219 308 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAM 387 (447)
Q Consensus 308 ~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~ 387 (447)
++.++++||+|||+.+..+.....+....+....+........+...++.....+....+..|.+|.+ |+++.++.+..
T Consensus 270 ~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~ 348 (393)
T PRK15011 270 LIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNT 348 (393)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHH
Confidence 99999999999998776655544433322222222221121111111111112233456778999976 99999999988
Q ss_pred HhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 388 GRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 388 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
..+++.++|.+.+.+.+..+....+++.+.+.+++.+..+ ..|||
T Consensus 349 ~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 393 (393)
T PRK15011 349 SRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLL-RIKDV 393 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hhcCC
Confidence 9999999999998877765544445545555555554444 34554
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-18 Score=171.94 Aligned_cols=321 Identities=12% Similarity=0.084 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------- 90 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------- 90 (447)
++.+..+......+...|.+++++|++..+.+++.++..+|..+++++.|+++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~ 89 (382)
T PRK10091 10 LGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS 89 (382)
T ss_pred HHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455556566667778999999999999999999999999999999999999999999
Q ss_pred -------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHH
Q 013219 91 -------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 151 (447)
Q Consensus 91 -------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i 151 (447)
.+....++.|+.|+++|++..+....+..+|..+++.++..+....+||+.+.+.++..++
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~ 169 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIA 169 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHH
Confidence 1122335679999999999999999999999998887776666678999999998876665
Q ss_pred HH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCch
Q 013219 152 LL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSG 230 (447)
Q Consensus 152 ~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (447)
.. ...+++||.++ +.+. +. +
T Consensus 170 ~~~~~~~~lp~~~~----~~~~-~~----------------------------------------------------~-- 190 (382)
T PRK10091 170 VLASIYFWVPDIRD----EAKG-GL----------------------------------------------------R-- 190 (382)
T ss_pred HHHHHHHhCCCCCc----cccc-CH----------------------------------------------------H--
Confidence 54 34556788642 0000 00 0
Q ss_pred hHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHH
Q 013219 231 LSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVV-LLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 309 (447)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~ 309 (447)
..++ .++++.. .......+.....++... ...+.+... .+.+.........+..+..+++.++
T Consensus 191 -~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~g~s~~~~~~~~~~~~~~~~ig~~~ 254 (382)
T PRK10091 191 -EQFH-FLRSPAP---WLIFAATMFGNAGVFAWFSYIKPYMMFI-----------SGFSETSMTFIMMLVGLGMVLGNLL 254 (382)
T ss_pred -HHHH-HhcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------cCCCHHHHHHHHHHHHHHHHHHhHH
Confidence 0011 1111111 111111111111111100 111111100 0111112222234456778889999
Q ss_pred HHHHHhhhChhHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHhhhhh-hhHhhccccCCcchhhhHhhHHHHH
Q 013219 310 AAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQSNILTTGLLFGARMCVMGAFT-VSLIYAAEIYPTSVRSTGAGAANAM 387 (447)
Q Consensus 310 ~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ElfP~~~R~~~~g~~~~~ 387 (447)
.+++.||+|||+.+..+..+..+..+.+.. ..+........+.......+... .......+.+|.+.++.+ ..+..
T Consensus 255 ~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 332 (382)
T PRK10091 255 SGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIA 332 (382)
T ss_pred HheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHH
Confidence 999999999998887766654444333322 22222212221222111111112 223344555666666554 44667
Q ss_pred HhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhc
Q 013219 388 GRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 388 ~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
..+++.++|.+.+.+.+..+ ....+...+.++++...+...+
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLY 375 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988877543 3344444444444443333333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-18 Score=169.60 Aligned_cols=331 Identities=13% Similarity=0.076 Sum_probs=198.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhcccccc-cccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc----------
Q 013219 23 QCFVLAYAGLGWVAEAMEIMILSFVGPTVKS-EWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG---------- 91 (447)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~---------- 91 (447)
.++.+.+..++++..-..-+.++...+.+.+ ++++|.+|.+++.++..+++.++.++.|++.||+|.|.
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 4566666667777777777888888888766 89999999999999999999999999999999999880
Q ss_pred ------h----------------------------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHH-----H
Q 013219 92 ------H----------------------------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI-----I 132 (447)
Q Consensus 92 ------~----------------------------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~-----~ 132 (447)
. .....+.+|+|+++||++.++.....++|..++.++... +
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l 191 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPV 191 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 0 111234699999999999999976666666544333221 1
Q ss_pred cC-------------CCCchHHHHhhhHHHHHHHHHh-hcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccc
Q 013219 133 MP-------------RLDWRWLLGLSSIPSFILLAFL-GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 198 (447)
Q Consensus 133 ~~-------------~~~WR~~~~~~~i~~~i~~~~~-~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 198 (447)
.. ..+||....+-+++.++..+.. +++++-|. .+.
T Consensus 192 ~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~~---------------------------- 240 (462)
T PRK15034 192 FAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SRA---------------------------- 240 (462)
T ss_pred HHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---ccc----------------------------
Confidence 11 2247777766656555554333 33443221 000
Q ss_pred cccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q 013219 199 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCR 278 (447)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~ 278 (447)
..++..+.+|+++ +.++..++++.+-.|.+...+.|.+....
T Consensus 241 -------------------------------~~~~~~~vlk~~~---~Wllslly~~tFG~fvg~s~~lp~~~~~~---- 282 (462)
T PRK15034 241 -------------------------------SIADQLPVLQRLH---LWLLSLLYLATFGSFIGFSAGFAMLAKTQ---- 282 (462)
T ss_pred -------------------------------CHHHHHHHhCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 0012222333332 22232333333323333333333222100
Q ss_pred CCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH--HHhhh---hhHHHHHHHHH
Q 013219 279 SPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--VTYQS---NILTTGLLFGA 353 (447)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l--~~~~~---~~~~~~~~~~~ 353 (447)
....+......+..+...++..++|+++||+|||+.+.++++.+.++.... ..... ........+..
T Consensus 283 --------~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~ 354 (462)
T PRK15034 283 --------FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMG 354 (462)
T ss_pred --------cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 011122222334456677777899999999999998888776555543322 11111 11111111112
Q ss_pred HHHH-hhhhhhhHhhccccCCc---------------------chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhh-H
Q 013219 354 RMCV-MGAFTVSLIYAAEIYPT---------------------SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQM-T 410 (447)
Q Consensus 354 ~~~~-~~~~~~~~~~~~ElfP~---------------------~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~-~ 410 (447)
.+.. ..+.+..+-+++.+||. +.-+...|+..+.+.+|+++.|.+++...+..+.+ .
T Consensus 355 l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~ 434 (462)
T PRK15034 355 LFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVG 434 (462)
T ss_pred HHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHH
Confidence 1122 22344677788888885 13556778999999999999999988776665433 4
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 013219 411 AVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 411 ~~~~~~~~~~i~~i~~~~~~ 430 (447)
.+..+....++|.+..+...
T Consensus 435 ~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 435 AMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56667777777777766653
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-17 Score=166.33 Aligned_cols=287 Identities=12% Similarity=0.156 Sum_probs=171.9
Q ss_pred HhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc---------------------------------
Q 013219 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG--------------------------------- 91 (447)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~--------------------------------- 91 (447)
....|.+.+++++++++.+++.+++.+|..++++++|+++||+|||.
T Consensus 26 ~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 105 (401)
T PRK11043 26 LPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQA 105 (401)
T ss_pred HhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34457778899999999999999999999999999999999999990
Q ss_pred -------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChH
Q 013219 92 -------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPR 164 (447)
Q Consensus 92 -------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~ 164 (447)
+....++.|+.|+++|+...+..+....+|..+++.++..+..+.+||..+++.++..++..+..+++||+|+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (401)
T PRK11043 106 VGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKK 185 (401)
T ss_pred hhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1112345699999999998888888888888888877766666789999999888877776665556666542
Q ss_pred HHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhh
Q 013219 165 YLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLAR 244 (447)
Q Consensus 165 ~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (447)
- + +.++. ..+++++++++..+
T Consensus 186 ~---~-~~~~~-------------------------------------------------------~~~~~~~~~~~~~~ 206 (401)
T PRK11043 186 A---R-KQSQD-------------------------------------------------------ALTFKQLLKSKTYL 206 (401)
T ss_pred c---c-ccchH-------------------------------------------------------HHHHHHHHcChhHH
Confidence 0 0 00000 01223333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHH
Q 013219 245 TTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSIT 324 (447)
Q Consensus 245 ~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~ 324 (447)
...+... .....++....+.|.+... .+.+............+..++|.++.+++.||+|||+...
T Consensus 207 ~~~~~~~---~~~~~~~~~~~~~p~~~~~-----------~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~ 272 (401)
T PRK11043 207 GNVLIFA---ACSAAFFAWLTGSPFILEQ-----------MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLP 272 (401)
T ss_pred HHHHHHH---HHHHHHHHHHHHhHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 1111111 1111122222222222110 0111111112223334566778888999999999998765
Q ss_pred HHHHHHHHHHHH---HHHh-hhhhH-HHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 325 IMFTLSCLFLLP---LVTY-QSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 325 ~~~~~~~~~~~~---l~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
.......+..+. .... ..... .........+.....++.......|.+|. .|+++.|+.+..+..++..++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~ 351 (401)
T PRK11043 273 WLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLV 351 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHH
Confidence 544433332221 1111 11111 11111111122223334455566677775 699999999999988888888888
Q ss_pred HHHHhh
Q 013219 400 VALVAN 405 (447)
Q Consensus 400 ~~l~~~ 405 (447)
+.+.+.
T Consensus 352 g~l~~~ 357 (401)
T PRK11043 352 SALIST 357 (401)
T ss_pred HHccCC
Confidence 766553
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=170.27 Aligned_cols=327 Identities=13% Similarity=0.110 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCcc-----hhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------
Q 013219 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTE-----ESLITTSVFAGLVVGAYAWGLVADNYGRS----------------- 90 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------- 90 (447)
+.+.............|.+.++++++..+ .+++.++..++..+++++.|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 101 (408)
T PRK09874 22 GCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM 101 (408)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence 34444555455556678887888888665 38889999999999999999999999999
Q ss_pred ----------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHH
Q 013219 91 ----------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIP 148 (447)
Q Consensus 91 ----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~ 148 (447)
.+....++.|+.|+++||+..+..+....+|.++++.++..+....+||..+.+.++.
T Consensus 102 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 181 (408)
T PRK09874 102 GLAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASV 181 (408)
T ss_pred HHHhhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 1112234569999999999999999999999998888877666667999999988777
Q ss_pred HHHHHH-HhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCC
Q 013219 149 SFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEG 227 (447)
Q Consensus 149 ~~i~~~-~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (447)
.++..+ ..+++||.++-. + +.++. .
T Consensus 182 ~~~~~~~~~~~~~~~~~~~--~-~~~~~--~------------------------------------------------- 207 (408)
T PRK09874 182 LFLCFLVTLFCIRENFQPV--S-KKEML--H------------------------------------------------- 207 (408)
T ss_pred HHHHHHHHHHHhccCcccc--c-chhhh--H-------------------------------------------------
Confidence 665543 345566654210 0 00000 0
Q ss_pred CchhHHHHhhcchh-hhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcccCCCCChhhH--HHHHHHHhhh
Q 013219 228 KSGLSLFLMLFSSK-LARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLMFSHHPQDANLY--IDEFITSLAE 303 (447)
Q Consensus 228 ~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~ 303 (447)
..+..+.++++ ..+......... .........+.+ .+.+.. .+....... ....+..+..
T Consensus 208 ---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~g~~~~~~~l~~ 271 (408)
T PRK09874 208 ---MREVVTSLKNPKLVLSLFVTTLII---QVATGSIAPILTLYVRELA----------GNVSNIAFISGMIASVPGVAA 271 (408)
T ss_pred ---HHHHHHhCcCCchHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHHHH
Confidence 00011111111 111111111111 001000000011 011000 001111100 1112234455
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhH
Q 013219 304 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383 (447)
Q Consensus 304 i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~ 383 (447)
+++..+.+++.||+|||+.+..+.....+..+......+.+...+..+...++.....+....+..|..|.+.|++..++
T Consensus 272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 351 (408)
T PRK09874 272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSY 351 (408)
T ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehH
Confidence 66777889999999999988877665554443333332222222221222222222234445566788899999999999
Q ss_pred HHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 384 ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 384 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
.+....++..++|.+.+.+.+..+....+...+++.+++.+..++.
T Consensus 352 ~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 397 (408)
T PRK09874 352 NQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNS 397 (408)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887776665566666776667766665544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-18 Score=168.41 Aligned_cols=341 Identities=11% Similarity=-0.003 Sum_probs=192.7
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------- 90 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------- 90 (447)
++.+..........+..+...++++.++.+.+++.+++.+++.+.+++.|+++||+|||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~ 89 (393)
T PRK11195 10 AAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI 89 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 34444444222234444555688888988999999999999999999999999999999
Q ss_pred ----------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH
Q 013219 91 ----------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 91 ----------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~ 154 (447)
.+...+++.|+.|+++|+++.+..+....+|.++++.++..+.. +.|+.++.+.+...++..+
T Consensus 90 ~~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~~~ 168 (393)
T PRK11195 90 HPLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYLLAAL 168 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 12233456799999999999999999999999999888766544 3477777766655554455
Q ss_pred HhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHH
Q 013219 155 FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLF 234 (447)
Q Consensus 155 ~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (447)
..+.+||+|+.. +++.++..+.++.. ....
T Consensus 169 ~~~~l~~~~~~~--~~~~~~~~~~~~~~------------------------------------------------~~~~ 198 (393)
T PRK11195 169 FNLFIPRLGARR--PGQSWNPIALLRDF------------------------------------------------FHAC 198 (393)
T ss_pred HHhcCCCCcccc--cccCCCHHHHHHHH------------------------------------------------HHHH
Confidence 567789987431 10000000000000 0112
Q ss_pred HhhcchhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 013219 235 LMLFSSKLARTTILL-WLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAIL 313 (447)
Q Consensus 235 ~~l~~~~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l 313 (447)
+.+++++..+..+.. .+.+.......+....+.+... +.+............++.+++.++.+++
T Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------------g~s~~~~G~~~~~~~~g~i~g~~~~~~l 264 (393)
T PRK11195 199 RVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVAL--------------GITLNQPAYLQAVVAIGIAVGAGAAARL 264 (393)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------------CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444443333222 1222222222232222333211 1111222223344456778888888999
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch-hhhHhhHHHHHHhHhH
Q 013219 314 VDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV-RSTGAGAANAMGRIGG 392 (447)
Q Consensus 314 ~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~-R~~~~g~~~~~~~i~~ 392 (447)
.||.++|+.+..+... +.....+....+.+......+...++.....+.......|.-|.+. ++++.++.+....++.
T Consensus 265 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~ 343 (393)
T PRK11195 265 VTLETVLRVLPAGILM-GLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAM 343 (393)
T ss_pred hcCCcccchHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHH
Confidence 9998888776665433 2222222222222211122212222211112233445567766665 7999999999999988
Q ss_pred hHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcc-ccccCCCcc
Q 013219 393 MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP-FETKGQELS 439 (447)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~-pEtkg~~l~ 439 (447)
.++..+...+ ...+-...+.+.+...++++...+.+. .|.+.|..|
T Consensus 344 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK11195 344 LLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMALLWRWHRRNQRQFD 390 (393)
T ss_pred HHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 8888777644 344444444444444445544444433 344444433
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.9e-18 Score=168.96 Aligned_cols=327 Identities=11% Similarity=0.018 Sum_probs=191.2
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------- 91 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------- 91 (447)
-++-.+..+....+.++.-+.+.+..+...|.+++++++++.+.+++.+.+++|+.+++++.|++.||+|||.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~ 99 (438)
T PRK10133 20 QSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF 99 (438)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3444455555555667778888899999999999999999999999999999999999999999999999990
Q ss_pred ------------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc--
Q 013219 92 ------------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-- 133 (447)
Q Consensus 92 ------------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~-- 133 (447)
+....++.|+.|+++|+...+..+.++.+|..+++.++..+.
T Consensus 100 ~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~ 179 (438)
T PRK10133 100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111223458877777777889999999999998887654321
Q ss_pred --C----------------C------CCchHHHHh-hhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcC
Q 013219 134 --P----------------R------LDWRWLLGL-SSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNK 187 (447)
Q Consensus 134 --~----------------~------~~WR~~~~~-~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~ 187 (447)
+ . .+||.+|+. ..+..++.. +....+||.|. ++. .
T Consensus 180 ~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~--------~~~-----------~ 240 (438)
T PRK10133 180 NVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS--------DNH-----------S 240 (438)
T ss_pred CCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------ccc-----------c
Confidence 0 0 256666653 333333322 22344555221 000 0
Q ss_pred CCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 013219 188 TKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLI 267 (447)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 267 (447)
+ + . ........+++++++..+...+..... ....++...|.
T Consensus 241 ~----------------~------------------~--~~~~~~~~~~ll~~~~~~~~~l~~~~~---~~~~~~~~~~~ 281 (438)
T PRK10133 241 D----------------A------------------K--QGSFSASLSRLARIRHWRWAVLAQFCY---VGAQTACWSYL 281 (438)
T ss_pred c----------------c------------------c--ccchhhhHHHHHhCchHHHHHHHHHHH---HHHHHHHHHHH
Confidence 0 0 0 000011233455544333222221111 12222222222
Q ss_pred H-HhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013219 268 S-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT 346 (447)
Q Consensus 268 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~ 346 (447)
+ .+... ..+.+............++.++|.++++++.||+|||+.+..+..++...++......+. ..
T Consensus 282 ~~~l~~~----------~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 350 (438)
T PRK10133 282 IRYAVEE----------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH-VG 350 (438)
T ss_pred HHHHhhh----------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCh-HH
Confidence 2 11100 011122222223345566778899999999999999998877665554443333222221 11
Q ss_pred HHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHH
Q 013219 347 TGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLV 416 (447)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~ 416 (447)
...+....++....++..+....|.+|.+ .+++.++.. ++.+++.+.|.+.+.+.+..+ ....+++..
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~ 419 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPA 419 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 22222333445556677888889998875 566777665 455678888888887766544 334444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-18 Score=167.66 Aligned_cols=118 Identities=16% Similarity=0.314 Sum_probs=98.2
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------------------------- 90 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------------------------- 90 (447)
...|.+.+++|+++.+.+++.+++.++..+++++.|+++||+|||
T Consensus 12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~ 91 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGL 91 (377)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 455777788999999999999999999999999999999999999
Q ss_pred -----chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-HHhhcccCCh
Q 013219 91 -----GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPESP 163 (447)
Q Consensus 91 -----~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP 163 (447)
.+....++.|+.|+++|++..++.+....+|..+++.++..+....+||..+.+.++..++.. +..+++||++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (377)
T PRK11102 92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL 170 (377)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 112234567999999999999999999999999988887666666799999998777766653 4456777764
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-18 Score=173.57 Aligned_cols=327 Identities=14% Similarity=0.068 Sum_probs=183.1
Q ss_pred HHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcchh--------------hh-------------
Q 013219 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHV--------------FL------------- 95 (447)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~~--------------~~------------- 95 (447)
...+....+++++|++..+.|++.++..++..+++++.|+++||+|||..+ ..
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILL 108 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566677999999999999999999999999999999999999100 00
Q ss_pred -hh----------------hhcccC--CCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHh
Q 013219 96 -SW----------------FLEFVP--PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFL 156 (447)
Q Consensus 96 -~~----------------~~E~~p--~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~ 156 (447)
.+ ..++.+ ++.||...+..+...++|..+++.++..+.. .+||.+|++.++..++..+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~ 187 (420)
T PRK09528 109 GAIVGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLL 187 (420)
T ss_pred HHHHHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHH
Confidence 00 012222 2445666667777777777777766655433 589999999888877665555
Q ss_pred hcc-cCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHH
Q 013219 157 GFQ-PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFL 235 (447)
Q Consensus 157 ~~l-pESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (447)
+++ ||.|+-- ++.++. + ++ +++...++.+
T Consensus 188 ~~~~~~~~~~~---~~~~~~--------------------------~-~~--------------------~~~~~~~~~~ 217 (420)
T PRK09528 188 FFAKPDAPSTA---KVANAL--------------------------G-AN--------------------ASAVSLKDAL 217 (420)
T ss_pred hcccccccchh---hhccch--------------------------h-cc--------------------cccccHHHHH
Confidence 443 4433200 000000 0 00 0000112333
Q ss_pred hhcchhhhhHHHHHH-HHHHHH-HHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHH
Q 013219 236 MLFSSKLARTTILLW-LLLFGN-SFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAIL 313 (447)
Q Consensus 236 ~l~~~~~~~~~~~~~-~~~~~~-~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l 313 (447)
+.++++..+...+.. ...... ........+..+.... .+.+....-....+..+..+++.++.+++
T Consensus 218 ~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~g~l 285 (420)
T PRK09528 218 ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFAT------------PEQGTRVFGYLNSFQVFLEALIMFFAPFI 285 (420)
T ss_pred HHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhc------------cCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444322222111 111110 0111111111111100 00111111112233455677889999999
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhH-HHHHHhHhH
Q 013219 314 VDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA-ANAMGRIGG 392 (447)
Q Consensus 314 ~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~-~~~~~~i~~ 392 (447)
.||+|||+.+..+..+.++......+..+.+......+...............+.+|.+|++.|+++.++ .+..+.+++
T Consensus 286 ~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~ 365 (420)
T PRK09528 286 INRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGA 365 (420)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHH
Confidence 9999999988776665555444444333322211111111111111123345788899999999998876 567778999
Q ss_pred hHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 393 MVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 393 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
+++|.+.+++.+..+....+...+++.++..++.++..++
T Consensus 366 ~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 366 VFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999988887665566777777766655555555443
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-17 Score=165.54 Aligned_cols=325 Identities=14% Similarity=0.063 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-----CCc-----------------
Q 013219 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRS----------------- 90 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-----GRr----------------- 90 (447)
.++.++..........|.+-++-|++.+|.|++..+... .+..+++|+++||+ |||
T Consensus 7 l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~ 84 (402)
T PRK11902 7 LGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAA 84 (402)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHH
Confidence 356667777777777788878889999999999877775 68899999999999 887
Q ss_pred ---------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCC-CCchHHH
Q 013219 91 ---------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLL 142 (447)
Q Consensus 91 ---------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~-~~WR~~~ 142 (447)
.+...+++.|+.|+++|++..++...++.+|.++++.+...+... .+||.+|
T Consensus 85 l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f 164 (402)
T PRK11902 85 MAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTY 164 (402)
T ss_pred HHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHH
Confidence 011223456999999999999999999999999988877666554 5999999
Q ss_pred HhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCC
Q 013219 143 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 222 (447)
Q Consensus 143 ~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
++.++..++..+..+++||+++.. ++.++..+
T Consensus 165 ~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~~~--------------------------------------------- 196 (402)
T PRK11902 165 LLMAGLMLAGALTTLWAPEPEVPA---RPPRSLGE--------------------------------------------- 196 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccc---cccchhHH---------------------------------------------
Confidence 998777666655566778876421 00000000
Q ss_pred CCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH-HHHHh
Q 013219 223 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE-FITSL 301 (447)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~ 301 (447)
+....++++++++..+..++...........++.. ..+.+.. ..+.+........ ....+
T Consensus 197 ------~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~--~~~~l~~-----------~~G~~~~~~g~~~~~~~~~ 257 (402)
T PRK11902 197 ------AVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGSL--STTFLIR-----------GAGFSAGEVGIVNKTLGLA 257 (402)
T ss_pred ------HHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHHH--HHHHHHH-----------hcCCCHHHHHHHHhHHHHH
Confidence 00113445555554444333322222111111111 1111110 0111111111111 12223
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HHhhhh-hHHHHHHHH----HHHHHhhhhhhhHhhccccCC
Q 013219 302 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSN-ILTTGLLFG----ARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l---~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~ElfP 373 (447)
..+++.++++++.||+|||+.+..+..+..+..+.+ ....++ .......+. ..+...........+..+.+|
T Consensus 258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 337 (402)
T PRK11902 258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFS 337 (402)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 578899999999999999988766555433332221 222222 211111111 111122223445667777777
Q ss_pred cchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 013219 374 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 374 ~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
.+.+ ++.+....+++...+.+.+.+.+..+....|.+.+.+++++.++++...
T Consensus 338 ~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~ 390 (402)
T PRK11902 338 ATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMR 390 (402)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6544 4444444455544445666677766655556666666667666655543
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-18 Score=169.34 Aligned_cols=281 Identities=12% Similarity=0.092 Sum_probs=169.3
Q ss_pred HHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-----CCcc-------------------------
Q 013219 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-----GRSG------------------------- 91 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-----GRr~------------------------- 91 (447)
...+++.|.+.+|+++|.++.|+.... .+...+ .+++|+++||+ |||.
T Consensus 5 ~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~ 82 (356)
T TIGR00901 5 GLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTD 82 (356)
T ss_pred hhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchh
Confidence 345667788889999999999998755 344444 89999999998 8981
Q ss_pred -------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCC--------chHHHHh
Q 013219 92 -------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD--------WRWLLGL 144 (447)
Q Consensus 92 -------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~--------WR~~~~~ 144 (447)
+...+++.|++|+|+|+++.++.+.+..+|.++++.++..+.++.+ ||.+|++
T Consensus 83 l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i 162 (356)
T TIGR00901 83 LPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFW 162 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHH
Confidence 1112346699999999999999999999999998888766655556 9999999
Q ss_pred hhHHHHHHHHHhh-cccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCC
Q 013219 145 SSIPSFILLAFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 223 (447)
Q Consensus 145 ~~i~~~i~~~~~~-~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (447)
.++..++..+..+ ..||+++. +.+.++.++
T Consensus 163 ~ai~~l~~~~~~~~~~~e~~~~---~~~~~~~~~---------------------------------------------- 193 (356)
T TIGR00901 163 TALLILPGLLVTLFLAKEPQED---ASVPKPLTQ---------------------------------------------- 193 (356)
T ss_pred HHHHHHHHHHHHHHhccCCCcc---cccchhHHH----------------------------------------------
Confidence 9888777665544 45775321 000000000
Q ss_pred CcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhH-HHHHHHHhh
Q 013219 224 TTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY-IDEFITSLA 302 (447)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 302 (447)
+....++++++++..++........+...+.++....+.+..... .+.+..... .......+.
T Consensus 194 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~g~~~~~~g~~~~~~~~~~ 257 (356)
T TIGR00901 194 -----AVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-----------MGFSKEEIALVAKINGLLG 257 (356)
T ss_pred -----HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHhHHHHHHH
Confidence 001123344444332233333222222334444433333322110 011111111 122222345
Q ss_pred hhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--h--------hh-hHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 303 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q--------SN-ILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 303 ~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.+++.++++++.||+|||+.+..+.++..+........ . .. +......+...++.....+....+..|.
T Consensus 258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (356)
T TIGR00901 258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKL 337 (356)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 67899999999999999988776666554443322221 1 11 1111112222233334456778999999
Q ss_pred CCcchhhhHhhHHHHHHh
Q 013219 372 YPTSVRSTGAGAANAMGR 389 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~ 389 (447)
+|++.|++..|+.+...+
T Consensus 338 ~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 338 SNPKFGATQMALLSSLSA 355 (356)
T ss_pred cCCCccHHHHHHHHHHHh
Confidence 999999999999877653
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-18 Score=167.78 Aligned_cols=145 Identities=10% Similarity=0.031 Sum_probs=98.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhh-h-hHH--HHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-N-ILT--TGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.+..+..+++.++.++++||+|||+.+..+.+..++....+..... . ... .+..+..........+....+.+|.+
T Consensus 258 ~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~ 337 (418)
T TIGR00889 258 SLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEV 337 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4456677888999999999999999998888776665444333221 1 111 11111111111122344567899999
Q ss_pred CcchhhhHhhHHH-HHHhHhHhHHHHHHHHHHhhch------hhHHHHHHHHHHHHHHHHHHhccccccCCCcccc
Q 013219 373 PTSVRSTGAGAAN-AMGRIGGMVCPLVAVALVANCH------QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDT 441 (447)
Q Consensus 373 P~~~R~~~~g~~~-~~~~i~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~ 441 (447)
|++.|+++.|+.+ ....+++.++|.+.+++.+..+ ....+.+.+++.+++.+..+++.+|+++.-..|+
T Consensus 338 p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 413 (418)
T TIGR00889 338 PVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIKVDD 413 (418)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCCCcc
Confidence 9999999999997 5567899999999998877643 2345666777777777888888889977554443
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-18 Score=171.35 Aligned_cols=304 Identities=15% Similarity=0.164 Sum_probs=172.2
Q ss_pred HhhHHHHHHHHHHHHHhhccc-ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------
Q 013219 30 AGLGWVAEAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------ 90 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------ 90 (447)
+.++.+....+....+...|. +++++|+++.+.+++.++..+++.+++++.|+++||+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~ 85 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG 85 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 445555666677777888885 8899999999999999999999999999999999999999
Q ss_pred ----------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc----------CCCCc
Q 013219 91 ----------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM----------PRLDW 138 (447)
Q Consensus 91 ----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~----------~~~~W 138 (447)
......++.|+.|+++|+...++.+.+.++|..+++.++..+. .+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w 165 (366)
T TIGR00886 86 LAVQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAW 165 (366)
T ss_pred HHhhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 0111234579999999999999998777777766655543321 13489
Q ss_pred hHHH-Hhhh-HHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccc
Q 013219 139 RWLL-GLSS-IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216 (447)
Q Consensus 139 R~~~-~~~~-i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
|+.+ ...+ +..++..+...+.||+|+- +.++.+ .+.+ .+..+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--------~~~~------------~~~~~----------- 209 (366)
T TIGR00886 166 GWAFVIVPAGILLLPALLIFFVGADTPPG-----KPATGK--------LSFK------------GARWS----------- 209 (366)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccCCcc-----cccchh--------cccc------------ccccc-----------
Confidence 9998 4333 3344444555667887741 111000 0000 00000
Q ss_pred cCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
. +++..+...++++++. ...+....+.....++....+.+..... ..+.+........
T Consensus 210 -------~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~~~~~ 267 (366)
T TIGR00886 210 -------V--GTGALGDQLKVFRDRH---TWILALLYSVTFGSFLGVSSIFAMFFKD----------QFGLSKVTAGAYA 267 (366)
T ss_pred -------c--cchhHHHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCcHHHHHHHH
Confidence 0 0000112233443322 1112122222222223332222221110 0011111112223
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-hhh--hhH-HHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQS--NIL-TTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.+..+..+++.++++++.||+|||+.+..+..........+.. ..+ ... ................+..+...+|++
T Consensus 268 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 347 (366)
T TIGR00886 268 SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIF 347 (366)
T ss_pred HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhc
Confidence 3445667888899999999999987766555443333322222 111 221 111111222222223356788889999
Q ss_pred CcchhhhHhhHHHHHHhHhH
Q 013219 373 PTSVRSTGAGAANAMGRIGG 392 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~ 392 (447)
| +.|+++.|+.+.++++++
T Consensus 348 ~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 348 R-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred h-hhcccHHHHHHHhccCCC
Confidence 8 589999999999887753
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=164.69 Aligned_cols=303 Identities=11% Similarity=0.047 Sum_probs=188.4
Q ss_pred HHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------
Q 013219 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------- 91 (447)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------- 91 (447)
...+.++.-+++....+...|.++++++++..+.|++.+..++|+++++++.|++.||+|||.
T Consensus 7 ~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~ 86 (410)
T TIGR00885 7 LITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW 86 (410)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 334555666677677778889999999999999999999999999999999999999999990
Q ss_pred --------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC-----------
Q 013219 92 --------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP----------- 134 (447)
Q Consensus 92 --------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~----------- 134 (447)
+....++.|+.|+++|++..++.+.+.++|..+++.+...+..
T Consensus 87 ~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~ 166 (410)
T TIGR00885 87 PAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVL 166 (410)
T ss_pred HHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhh
Confidence 1112355699999999999999999999999988877654321
Q ss_pred ---------------CCCchHHHHhhhHHHHHHHHHh--hcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcccc
Q 013219 135 ---------------RLDWRWLLGLSSIPSFILLAFL--GFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVA 197 (447)
Q Consensus 135 ---------------~~~WR~~~~~~~i~~~i~~~~~--~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~ 197 (447)
..+||.++++.++..++..+.. ..+||.++ ++.
T Consensus 167 ~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~--------~~~---------------------- 216 (410)
T TIGR00885 167 DKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH--------SDA---------------------- 216 (410)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc--------ccc----------------------
Confidence 1259999988777665544333 22444211 000
Q ss_pred ccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 013219 198 RRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRC 277 (447)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 277 (447)
+ + . +. ..+.+++++++..+...+..+.+.+... +...+.+......
T Consensus 217 ----~--~------------------~-~~---~~~~~~~~~~~~~~~~~l~~f~yvg~e~---~~~s~l~~y~~~~--- 262 (410)
T TIGR00885 217 ----K--Q------------------I-SF---SASLSRLARIRHYREGVIAQFFYVGVQI---MCWTFIIQYAVRL--- 262 (410)
T ss_pred ----c--c------------------c-cc---hhhHHHHHhChhHHHHHHHHHHHHHHHH---HHHHHHHHHHhhc---
Confidence 0 0 0 00 0011223333332222222222222111 1111111111000
Q ss_pred cCCCcccCCCC-ChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 013219 278 RSPLMFSHHPQ-DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMC 356 (447)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 356 (447)
..+.. ...... .........+|-++++++.||+++|+.+.++..++.+..+......+.. ....+....++
T Consensus 263 ------~~~~~~~~a~~~-~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~-~~~~l~~~glf 334 (410)
T TIGR00885 263 ------IPGMTAGFAANY-NIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHV-GLYCLTLCSAF 334 (410)
T ss_pred ------cCCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChH-HHHHHHHHHHH
Confidence 00011 111111 1122345578899999999999999988777776666655444433322 23333333445
Q ss_pred HhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 357 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 357 ~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
....++..+....+.++.+.+..+.++...+ +++.+.|.+.+.+.+.
T Consensus 335 ~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~ 381 (410)
T TIGR00885 335 MSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDM 381 (410)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHH
Confidence 5667788999999999998877777777665 8999999999988773
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-17 Score=163.49 Aligned_cols=318 Identities=16% Similarity=0.119 Sum_probs=185.7
Q ss_pred HhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------------
Q 013219 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------- 90 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------- 90 (447)
...+.+....+....+...|.+.+++|+|..+.|++.+++.+|..+++++.|+++||+|||
T Consensus 11 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~ 90 (381)
T PRK03633 11 LLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL 90 (381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677778888888889999999999999999999999999999999999999999999
Q ss_pred ---------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHH
Q 013219 91 ---------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 149 (447)
Q Consensus 91 ---------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~ 149 (447)
.+.....+.|..|+++||+..+..+.+.++|..+++.+...+.....|+..+....+..
T Consensus 91 ~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~ 170 (381)
T PRK03633 91 MVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLA 170 (381)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 01112345688899999999999999999999988887765543322333322221111
Q ss_pred HHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCc
Q 013219 150 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 229 (447)
Q Consensus 150 ~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
.+..+.....||++. + + + +++
T Consensus 171 ~~~~~~~~~~~~~~~-----------------------~----------------~---------------~----~~~- 191 (381)
T PRK03633 171 AILPLLFTRILNQQA-----------------------E----------------N---------------H----DST- 191 (381)
T ss_pred HHHHHHHhcccCCCC-----------------------C----------------C---------------C----CCC-
Confidence 111111111111000 0 0 0 000
Q ss_pred hhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHH
Q 013219 230 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLL 309 (447)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~ 309 (447)
+.++.++++..+......+... +.+.....+.|..... .+.+.........+..+..+++.++
T Consensus 192 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~lp~~~~~-----------~g~s~~~~g~~~~~~~~~~~~~~~~ 254 (381)
T PRK03633 192 ---SIWPMLKLRQARLGVNGCIISG---IVLGSLYGLMPLYLNH-----------QGMSDASIGFWMALLVSAGILGQWP 254 (381)
T ss_pred ---CHHHHHHhcchHHHHHHHHHHH---HHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 1112333332221111111111 1111111122321110 0111111112233445677888999
Q ss_pred HHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHh
Q 013219 310 AAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR 389 (447)
Q Consensus 310 ~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~ 389 (447)
.+++.||+|||+.+..+.....+..+.+. ...... .. .+..........+....+..|..|.+.++...+..+....
T Consensus 255 ~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~-~~-~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (381)
T PRK03633 255 IGRLADRFGRLLVLRVQVFVVILGSIAML-SQAAMA-PA-LFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYT 331 (381)
T ss_pred hHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hhHHHH-HH-HHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 99999999999988766555444332222 111111 11 1111111222345566778899998887777888788888
Q ss_pred HhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 013219 390 IGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 426 (447)
Q Consensus 390 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 426 (447)
+++.++|.+.+++.+..+....+.+.+.+.+++.+..
T Consensus 332 lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 332 VGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 9999999999988877665555666666666554433
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=165.85 Aligned_cols=322 Identities=20% Similarity=0.285 Sum_probs=201.3
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------------------------------
Q 013219 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------- 91 (447)
Q Consensus 53 ~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------- 91 (447)
.+|+.++.|++++.|++++|+++++++.|+++||+|-|.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~ 145 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVL 145 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHH
Confidence 468899999999999999999999999999999999991
Q ss_pred -hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCC-CCchHHHHhhhHHHHHHHHH-hhcccCChHHHHh
Q 013219 92 -HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR-LDWRWLLGLSSIPSFILLAF-LGFQPESPRYLCL 168 (447)
Q Consensus 92 -~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~-~~WR~~~~~~~i~~~i~~~~-~~~lpESP~~L~~ 168 (447)
+........|+|+++|++..++...+..+|.+++.+++..+... .||+..|++.++.+++..+. .++.-|+|.-
T Consensus 146 ~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~--- 222 (466)
T KOG2532|consen 146 FPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK--- 222 (466)
T ss_pred HhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---
Confidence 11222356999999999999999999999999988776665544 89999999999988887554 5566888873
Q ss_pred cCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHH
Q 013219 169 KGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTIL 248 (447)
Q Consensus 169 ~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (447)
+.+..+. .++++++...+ ++.+++ ....++++++++. .+.
T Consensus 223 h~~is~~--El~~I~~~k~~---------------------------------~~~~~~--~~vP~~~i~ts~~---vwa 262 (466)
T KOG2532|consen 223 HPNISEK--ELKYIEKGKSE---------------------------------AHVKKK--PPVPYKAILTSPP---VWA 262 (466)
T ss_pred CCCCCHH--HHHHHHhcccc---------------------------------cccCCC--CCCCHHHHHcCHH---HHH
Confidence 3232221 12222211000 000000 1125677776644 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhCh---------
Q 013219 249 LWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR--------- 319 (447)
Q Consensus 249 ~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GR--------- 319 (447)
+|...++....++.+..+.|...+.. .+....+......+..+...+..+++|.++||+-+
T Consensus 263 i~~~~f~~~~~~~~l~~y~PtY~~~V----------L~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~r 332 (466)
T KOG2532|consen 263 IWISAFGGNWGFYLLLTYLPTYLKEV----------LGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVR 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH----------hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHH
Confidence 34444455555555555555433211 01111111223445677778888999999999855
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhHhhccccC-CcchhhhHhhHHHHHHhHhHhHHH
Q 013219 320 KLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVRSTGAGAANAMGRIGGMVCP 396 (447)
Q Consensus 320 r~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R~~~~g~~~~~~~i~~~~~~ 396 (447)
|..-.+++.+.+++++.+.+... .....+++..+ .+..|. .....+.+-.- .++.-+..+|+.+.++.+.++++|
T Consensus 333 kifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~-~~~~g~-~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P 410 (466)
T KOG2532|consen 333 KIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIA-IGLSGF-NISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAP 410 (466)
T ss_pred HHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHH-HHHccc-chhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 22334566666666666655332 22223322222 122222 22222233333 667788999999999999999999
Q ss_pred HHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHHhc
Q 013219 397 LVAVALVANC---HQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 397 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
.+.+.+..+. .+...|++.+++.+++.++..++
T Consensus 411 ~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 411 LLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 9998776321 23345667777777766544444
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-17 Score=188.14 Aligned_cols=302 Identities=13% Similarity=-0.012 Sum_probs=175.3
Q ss_pred HHHHHHHHHhhcccccccccCCCc--chhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------------
Q 013219 37 EAMEIMILSFVGPTVKSEWNLSST--EESLITTSVFAGLVVGAYAWGLVADNYGRS------------------------ 90 (447)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------------ 90 (447)
...|......+.+.+..+++.+.+ ..+++.+++.++++++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~ 101 (1146)
T PRK08633 22 AFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLG 101 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444445555555665443 368999999999999999999999999999
Q ss_pred -------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCC---------CCchHHH
Q 013219 91 -------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR---------LDWRWLL 142 (447)
Q Consensus 91 -------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~---------~~WR~~~ 142 (447)
.+...+++.|++|+++|+++.++.+.+..+|.+++++++.++... .+|++.+
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~ 181 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPA 181 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHH
Confidence 112233567999999999999999999999999998887665433 2455554
Q ss_pred Hhhh-HHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCC
Q 013219 143 GLSS-IPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 221 (447)
Q Consensus 143 ~~~~-i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (447)
.+.. ...++.++..+.+||+|++...++ ++ .+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------------------------~~---------------- 214 (1146)
T PRK08633 182 GLVLLAVAVLGLIFAYRLPKVPAAAPEVF--DK-----------------------------KK---------------- 214 (1146)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCCCCcccc--cc-----------------------------cc----------------
Confidence 4433 334444555667899875321000 00 00
Q ss_pred CCCcCCCchhHHHHhhcchhhhhHHHHHH-HHHHHHH-HHHHHHHHHHHHhhcccccccCCCcccCCCCCh-hhHHHHHH
Q 013219 222 NKTTEGKSGLSLFLMLFSSKLARTTILLW-LLLFGNS-FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDA-NLYIDEFI 298 (447)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~i 298 (447)
....+.....++.+++++..+..++.. +.++... +..+...++...+ +.+.. ........
T Consensus 215 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------g~s~~~~~g~~~~~ 277 (1146)
T PRK08633 215 --YLFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVL---------------GLDNTFQVQYLLAA 277 (1146)
T ss_pred --cccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh---------------CCCcHHHHHHHHHH
Confidence 000000112344455544333322221 1111111 1111111111111 11111 11222344
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 378 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~ 378 (447)
..++.+++.++.+++.||+++|+.+.++.++.++.++.+....+.....+..+...++.....+....+..|..|.+.|+
T Consensus 278 ~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg 357 (1146)
T PRK08633 278 SAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELG 357 (1146)
T ss_pred HHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchh
Confidence 45667888999999999999888777666655544444333322222222222222222233345678889999999999
Q ss_pred hHhhHHHHHHhHhHhHHHHHHHHH
Q 013219 379 TGAGAANAMGRIGGMVCPLVAVAL 402 (447)
Q Consensus 379 ~~~g~~~~~~~i~~~~~~~~~~~l 402 (447)
+++|+.+.+..+++++++.+...+
T Consensus 358 ~~~~~~~~~~~lg~~~~~~~~~~l 381 (1146)
T PRK08633 358 KVLAANNFLQNVGMLLFLALTTLF 381 (1146)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998887776655433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-17 Score=157.34 Aligned_cols=339 Identities=16% Similarity=0.158 Sum_probs=208.2
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
..+-|.+.+.+..+.....-+--+.++...+.+++++++|++|.+++.++.-+.+.+--++.|++.||+|-|
T Consensus 8 ~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~ 87 (417)
T COG2223 8 GKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSML 87 (417)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHH
Confidence 334445544444444444444456777788899999999999999999999999999999999999999999
Q ss_pred ----------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC
Q 013219 91 ----------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL 136 (447)
Q Consensus 91 ----------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~ 136 (447)
..+...++++|.||+++|.+.++.. .-++|..+...++-.+....
T Consensus 88 l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~ 166 (417)
T COG2223 88 LLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF 166 (417)
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH
Confidence 1223346679999999999999998 88888877776665554445
Q ss_pred C---chHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 137 D---WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 137 ~---WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
+ ||....+-.++.++. ++..+.+-+.|..... .+ +.
T Consensus 167 g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~------------------~~----------------~~------ 206 (417)
T COG2223 167 GFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRAS------------------VK----------------PQ------ 206 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhcc------------------cc----------------cc------
Confidence 6 998887776766664 4444455444432000 00 00
Q ss_pred cccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 292 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
.+ .+++.++++++.....+.....|+. +-+...+.+.+.... .+....+.
T Consensus 207 --------------~~---~~~~~v~~~~~~W~lsllY~~tFG~---Fvgfs~~l~~~~~~~----------fg~~~~~A 256 (417)
T COG2223 207 --------------LP---AQLKAVFSNKDTWLLSLLYFATFGG---FVGFSAYLPMYLVTQ----------FGLSPVTA 256 (417)
T ss_pred --------------ch---hHHHHHhcCcchHHHHHHHHHHHHH---HHHHHHHHHHHHHHh----------cCCChhhH
Confidence 00 1233344333322222222233322 222222333222100 01111111
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHH-HHHhhhhhhhH
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ------SNILTTGLLFGAR-MCVMGAFTVSL 365 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~-~~~~~~~~~~~ 365 (447)
-.......+.....=.++|+++||+|.+|.+...+.++.++..++.... .........+... .+...+....+
T Consensus 257 g~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvf 336 (417)
T COG2223 257 GLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVF 336 (417)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchhe
Confidence 1112222333334445789999999988888887877777766655432 1111122222222 23333445678
Q ss_pred hhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHhc
Q 013219 366 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 366 ~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~i~~~~~ 429 (447)
-+.+.+||.+ -+...|+..+++.++++.-|..++...+..+. ...+.++..+.++|.+..+..
T Consensus 337 k~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 337 KMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred eechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899885 45578999999999999999999887777663 345667777777777766654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-16 Score=158.88 Aligned_cols=133 Identities=9% Similarity=0.059 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc--------------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG-------------------- 91 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~-------------------- 91 (447)
...+...+.........|.+.+++|+++.+.+++.+++.++..++++++|+++||+|||.
T Consensus 15 ~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~ 94 (394)
T PRK11652 15 LLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH 94 (394)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence 333444454455555678888999999999999999999999999999999999999991
Q ss_pred --------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHH
Q 013219 92 --------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFI 151 (447)
Q Consensus 92 --------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i 151 (447)
+....+..|..|+++|+...+..+.+..+|..+++.++..+....+||..+.+.++..++
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~ 174 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG 174 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 111123458889999999999999999999888888776666667999999988776655
Q ss_pred H-HHHhhcccCChH
Q 013219 152 L-LAFLGFQPESPR 164 (447)
Q Consensus 152 ~-~~~~~~lpESP~ 164 (447)
. .+..+++||+|+
T Consensus 175 ~~~~~~~~~~~~~~ 188 (394)
T PRK11652 175 VTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHhCCccCc
Confidence 4 344566788763
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-18 Score=169.22 Aligned_cols=332 Identities=14% Similarity=0.191 Sum_probs=202.5
Q ss_pred CCchHH--HHHHHHHhhHHHHHHHHHHHHHhhc-ccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCC-c---
Q 013219 18 GFGKYQ--CFVLAYAGLGWVAEAMEIMILSFVG-PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGR-S--- 90 (447)
Q Consensus 18 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GR-r--- 90 (447)
+..+++ ++++-++++.++..+.|+.+++... -.++.|.++..++.+.+.+++++|+++|.+++|.+.||+.- |
T Consensus 36 ~~l~~K~dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~ 115 (495)
T KOG2533|consen 36 RKLLRKLDLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLS 115 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHH
Confidence 344444 5555566666777888887665432 33567888999999999999999999999999999999993 3
Q ss_pred ------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHH--
Q 013219 91 ------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII-- 132 (447)
Q Consensus 91 ------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~-- 132 (447)
.|....++.-|..+++||...+++..+..+|+++++++++.+
T Consensus 116 ~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 116 VSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhh
Confidence 233445678999999999999999999999999999999885
Q ss_pred ----cCCCCchHHHHhhhHHHHHHH-HHhhcccCChH--HHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCC
Q 013219 133 ----MPRLDWRWLLGLSSIPSFILL-AFLGFQPESPR--YLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTG 205 (447)
Q Consensus 133 ----~~~~~WR~~~~~~~i~~~i~~-~~~~~lpESP~--~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (447)
....|||++|++.++..++.. +.++++|+.|. |...+++.+- +.+++++.+.+.
T Consensus 196 ~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~---~~~~~~~~~~~~---------------- 256 (495)
T KOG2533|consen 196 LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKEL---VVERLRESPSGG---------------- 256 (495)
T ss_pred hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHH---HHHHHHhccCCC----------------
Confidence 235689999999988888775 55778999998 4322211111 122222111100
Q ss_pred CCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccC
Q 013219 206 ERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSH 285 (447)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~ 285 (447)
..++ .++..+++.++.+. ++...+..++.....|+...|.|.+.+. + .
T Consensus 257 -----------------~~~~--~~~~~~~~a~~dp~---vw~~~l~~~~~~lv~~~~~~~lpl~l~~-~---------~ 304 (495)
T KOG2533|consen 257 -----------------IENK--FKWKGFKEALKDPG---VWPFSLCYFFLKLVNYGFSYWLPLYLKS-N---------G 304 (495)
T ss_pred -----------------cccc--cCHHHHHHHHhchh---HHHHHHHHHHHhhccccHHHHHHHHHHc-C---------C
Confidence 0000 12234555554332 2333333444445555555555543321 0 0
Q ss_pred CCCChhhHHHHHHHHhhhhhHHHHHHHHHhh----hChhHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhhh
Q 013219 286 HPQDANLYIDEFITSLAEIPGLLLAAILVDT----AGRKLSITIMFTLSCLFL-LPLVTYQSNILTTGLLFGARMCVMGA 360 (447)
Q Consensus 286 ~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr----~GRr~~l~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~ 360 (447)
+.+..+.-...+...++++++.+++++++|| ..+|........+..... +.+.............+...+.....
T Consensus 305 ~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 384 (495)
T KOG2533|consen 305 GYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAFLIGPYGLIAT 384 (495)
T ss_pred CcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhccchHHhHHHHhcchhhHHH
Confidence 0111111122345577888999999999999 556665555444333322 22222211111122122222222333
Q ss_pred hhhhHhhccccCCcchhhhHhhHHHHHH-hHhHhHHHHHHH
Q 013219 361 FTVSLIYAAEIYPTSVRSTGAGAANAMG-RIGGMVCPLVAV 400 (447)
Q Consensus 361 ~~~~~~~~~ElfP~~~R~~~~g~~~~~~-~i~~~~~~~~~~ 400 (447)
.+....+.++....+.|..+....+..+ ..++.++|.++.
T Consensus 385 ~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~ 425 (495)
T KOG2533|consen 385 AIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR 425 (495)
T ss_pred HHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence 3456777888888777777776665554 467777777664
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-16 Score=157.55 Aligned_cols=320 Identities=12% Similarity=-0.008 Sum_probs=187.9
Q ss_pred hHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------
Q 013219 32 LGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------- 90 (447)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------- 90 (447)
++++.............|.+.++++.|..+.|++.+++.++..++++++|+++||+||+
T Consensus 11 ~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~ 90 (382)
T TIGR00902 11 LGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444434444445677788999999999999999999999999999999999985
Q ss_pred ---------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHH
Q 013219 91 ---------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPS 149 (447)
Q Consensus 91 ---------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~ 149 (447)
.+...++..|+ +++|++..+......++|.+++++++..+..+.|||..+.+..+..
T Consensus 91 ~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~ 168 (382)
T TIGR00902 91 AHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGL 168 (382)
T ss_pred hhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 01111122343 4678888888888999999998887777767789999988765443
Q ss_pred HHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCc
Q 013219 150 FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKS 229 (447)
Q Consensus 150 ~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (447)
.+..+ .+.++|+|. +++.+ + ++ + . +
T Consensus 169 ~~~~~-~~~~~~~~~----~~~~~----------------------------~-~~---------------~--~-~--- 193 (382)
T TIGR00902 169 AFMLI-GFLIKPTIP----PKDAI----------------------------P-ED---------------E--S-Q--- 193 (382)
T ss_pred HHHHH-HHHcCCCCC----CCccc----------------------------c-cc---------------c--c-c---
Confidence 32222 223344320 00000 0 00 0 0 0
Q ss_pred hhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHH
Q 013219 230 GLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLL 308 (447)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~ 308 (447)
..++.++++++|.....++...........++. +.+ .+.+ .+.+.........+..+.++++..
T Consensus 194 ~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~l~~------------~g~s~~~~g~l~~~~~~~~i~~~~ 258 (382)
T TIGR00902 194 GDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYG---FSAIYWQA------------AGISASATGLLWGIGVLAEIIIFA 258 (382)
T ss_pred cchhHHHHHcChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH------------CCCCHhHHHHHHHHHHHHHHHHHH
Confidence 001234455554332222222221111112222 112 1110 011111111223345677788889
Q ss_pred HHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHH
Q 013219 309 LAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMG 388 (447)
Q Consensus 309 ~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~ 388 (447)
+.+++.||+|+|+++..+.+.+.+....+.+..+.+.....-+.-.+......+....+..+. |.+.|+++.++.+...
T Consensus 259 ~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~ 337 (382)
T TIGR00902 259 FSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALA 337 (382)
T ss_pred HhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHH
Confidence 999999999999998888777766655544433322211111111111122233455677787 9999999999977544
Q ss_pred -hHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 013219 389 -RIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILS 425 (447)
Q Consensus 389 -~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~ 425 (447)
.++..++|.+.+++.+..+. ..|+..+.+.+++.+.
T Consensus 338 ~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 338 MGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 57888899999988887653 4566666666665443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-16 Score=157.81 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------------------
Q 013219 36 AEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------------- 90 (447)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------------- 90 (447)
....+........|++.++++.+.++.++..+++++|+.++++++|+++||+|||
T Consensus 27 ~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~ 106 (413)
T PRK15403 27 AAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQ 106 (413)
T ss_pred HHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3444444555566778889999999999999999999999999999999999999
Q ss_pred ---------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHH
Q 013219 91 ---------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 155 (447)
Q Consensus 91 ---------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 155 (447)
.+....+..|+.|+++|++..++.+....+|..++++++..+..+.+||+.|++.++..++..+.
T Consensus 107 l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~ 186 (413)
T PRK15403 107 FLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG 186 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 11122456699999999999999999999999998888877666679999999988877766544
Q ss_pred -hhcccCChH
Q 013219 156 -LGFQPESPR 164 (447)
Q Consensus 156 -~~~lpESP~ 164 (447)
.+++||+++
T Consensus 187 ~~~~lp~~~~ 196 (413)
T PRK15403 187 LLLAMPETVK 196 (413)
T ss_pred HHHhCCCCcc
Confidence 556898763
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=158.61 Aligned_cols=311 Identities=14% Similarity=0.118 Sum_probs=180.5
Q ss_pred HHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------------------
Q 013219 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------------------- 90 (447)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------------------- 90 (447)
..+..+.+++++|++..+.|++.++..+++.+++++.|+++||+|||
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALI 106 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455667788999999999999999999999999999999999999
Q ss_pred -------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH-HhhcccCC
Q 013219 91 -------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA-FLGFQPES 162 (447)
Q Consensus 91 -------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~-~~~~lpES 162 (447)
.+....+..|..|+++|++..++.+...++|..+++.++..+. +.+||.+|.+.++..++..+ ..+++||+
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~-~~g~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 107 NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV-MQSINLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1112345579999999999999999999999999888876654 36899999988777666543 33445554
Q ss_pred hHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhh
Q 013219 163 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 242 (447)
Q Consensus 163 P~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (447)
++ +++.++ ++ ..+.++.++++.
T Consensus 186 ~~----~~~~~~-~~-----------------------------------------------------~~~~~~~~~~~~ 207 (395)
T PRK10054 186 EK----AIATET-GS-----------------------------------------------------VWSPSVLLQDKA 207 (395)
T ss_pred cc----ccccch-hh-----------------------------------------------------hhhhhhhccCce
Confidence 31 000000 00 000112232222
Q ss_pred hhHHHHH-HHHHHHHH-HHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChh
Q 013219 243 ARTTILL-WLLLFGNS-FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 320 (447)
Q Consensus 243 ~~~~~~~-~~~~~~~~-~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr 320 (447)
.....+. .+..+... +..+.. .+.....+ .+...........+..+..++.....+.+.||.+||
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 274 (395)
T PRK10054 208 LLWFTCSGFLASFVSGAFASCIS-QYVMVVAD------------SDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIR 274 (395)
T ss_pred ehHHHHHHHHHHHHHHHhhhhHH-HHHHHhcc------------cchHHHHHHHHHHhhhhheeeehhHHHHHHccCCch
Confidence 1111111 11111111 111111 11111100 001111111112222233444556778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 321 LSITIMFTLSCLFLLPLVTYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
+.+..++....+....+....++. ...+......++.....+....+..|.-|++.|++..+..+ .++++..++|.+.
T Consensus 275 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~ 353 (395)
T PRK10054 275 PLMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVS 353 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHH
Confidence 988776654444433333222221 11111222222222222345678889999999999988654 6778999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 013219 400 VALVANCHQMTAVVLLVVVIVTSILSVM 427 (447)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~i~~i~~~ 427 (447)
+.+.+..+....+.+.+.+..++.++..
T Consensus 354 G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 354 GVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred HHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9888876554445555555444444433
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.6e-17 Score=162.51 Aligned_cols=296 Identities=14% Similarity=0.034 Sum_probs=176.9
Q ss_pred HHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh----hCCcc--------------------h-----
Q 013219 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRSG--------------------H----- 92 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr----~GRr~--------------------~----- 92 (447)
+...+..+.+.+++++++.+.|++.++..+..++..++.|+++|| +|||. +
T Consensus 17 ~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~ 96 (437)
T TIGR00792 17 IVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSAT 96 (437)
T ss_pred HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcc
Confidence 334456677778899999999999999999999999999999997 78860 0
Q ss_pred ----------------------hhhhhhhccc-CCCCchhHHHHHHHHHhhhhHHHHHHHHHH----c---CCCCchHHH
Q 013219 93 ----------------------VFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWII----M---PRLDWRWLL 142 (447)
Q Consensus 93 ----------------------~~~~~~~E~~-p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~----~---~~~~WR~~~ 142 (447)
...++..|.. ++++|+++.++.+.+..+|.++++.+...+ . +..+||+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~ 176 (437)
T TIGR00792 97 GKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFA 176 (437)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHH
Confidence 0011234877 578999999999999999887765543322 1 246899999
Q ss_pred HhhhHHHHHHHH-HhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCC
Q 013219 143 GLSSIPSFILLA-FLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 221 (447)
Q Consensus 143 ~~~~i~~~i~~~-~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (447)
.+.++..++..+ ..+.+||.|+. +.++ ++
T Consensus 177 ~i~~~l~~~~~~~~~~~~~e~~~~-----~~~~-----------------------------~~---------------- 206 (437)
T TIGR00792 177 LVLALIGVVSLIICFFGTKERYSE-----IPKN-----------------------------IE---------------- 206 (437)
T ss_pred HHHHHHHHHHHHHHHcCCEecCCC-----CCcc-----------------------------cc----------------
Confidence 988887766544 44566775410 0000 00
Q ss_pred CCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHh
Q 013219 222 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL 301 (447)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 301 (447)
++.+....++.+++++..+...+.. +...+.++....+.+..... ..+..... .....+..+
T Consensus 207 ----~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~i 268 (437)
T TIGR00792 207 ----KKLSLKQIFKALFKNDQLLILCLAY---LFYNLAFNIKNGVQVYYFTY----------VLGDPELF-SYMGSIAIV 268 (437)
T ss_pred ----cCCCHHHHHHHHhCCHHHHHHHHHH---HHHHHHHHHHcchhheeEee----------ecCChHHH-HHHHHHHHH
Confidence 0000112344555554433322221 11112222211111111100 01111111 112233467
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhHhhccccCC-------
Q 013219 302 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP------- 373 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP------- 373 (447)
..+++.++.+++.||+|||+.+..+..++.+..+.+....++ ....+..+...+......+..+.+.+|..|
T Consensus 269 ~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (437)
T TIGR00792 269 AGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTG 348 (437)
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcC
Confidence 778889999999999999998877766555444333332222 222222222222233334567788888765
Q ss_pred cchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 374 TSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 374 ~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
.+.+++..|+.+....+++.+++.+.+.+++.
T Consensus 349 ~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~ 380 (437)
T TIGR00792 349 VRAEGLVYSVRTFVRKLGQALAGFLVGLILGI 380 (437)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788889999999999999999998887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-16 Score=153.98 Aligned_cols=318 Identities=15% Similarity=0.101 Sum_probs=173.5
Q ss_pred ccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcchhh--------------------------hh--h---
Q 013219 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHVF--------------------------LS--W--- 97 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~~~--------------------------~~--~--- 97 (447)
+.+.+++|+++.+.|++.++..++..+++++.|+++||+|||..+. .. +
T Consensus 27 ~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T TIGR00882 27 IWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGG 106 (396)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4455678999999999999999999999999999999999991000 00 0
Q ss_pred -------------hhcccCC--CCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhh-cccC
Q 013219 98 -------------FLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLG-FQPE 161 (447)
Q Consensus 98 -------------~~E~~p~--~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~-~lpE 161 (447)
..++.++ +.++...+......++|..+++.++..+. ..+||.+|++.++.+++..+..+ ..||
T Consensus 107 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 107 LYLGFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHhccchhhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0122222 22334445555666677777766655443 46999999998877776544433 3455
Q ss_pred ChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh
Q 013219 162 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK 241 (447)
Q Consensus 162 SP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (447)
+|+. ++..+ +.+ ++ + + + + ...+.+++++++
T Consensus 186 ~~~~-------~~~~~--------~~~---------------~~----------------~-~-~-~-~~~~~~~~l~~~ 215 (396)
T TIGR00882 186 APSS-------ATVAN--------ALG---------------AN----------------A-S-A-F-SLKLALELFRQR 215 (396)
T ss_pred Cchh-------hhhhc--------ccc---------------cc----------------c-C-C-C-CHHHHHHHHcCC
Confidence 5431 00000 000 00 0 0 0 0 012345555554
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChh
Q 013219 242 LARTTILLWLLLFGNSFAYYAVVLLIS-ELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRK 320 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr 320 (447)
......+. .+.....+.....+.+ .+.... ...+...........+..+...++.+..+++.||+|||
T Consensus 216 ~~~~~~l~---~~~~~~~~~~~~~~~~~y~~~~~--------~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~ 284 (396)
T TIGR00882 216 KFWMFVLY---VVGVACVYDVFDQQFANFFTSFF--------ATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK 284 (396)
T ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc--------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 32222211 1111111111111111 111000 00001111111122334566777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhH-HHHHHhHhHhHHHHHH
Q 013219 321 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA-ANAMGRIGGMVCPLVA 399 (447)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~-~~~~~~i~~~~~~~~~ 399 (447)
+.+.++..+.++.........+.+......+....+..........+..|.+|.+.|+++.+. .+....++++++|.+.
T Consensus 285 ~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~ 364 (396)
T TIGR00882 285 NALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLA 364 (396)
T ss_pred hhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhH
Confidence 988776665554433323322222211111111111111112345577888999999998887 5677889999999999
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 013219 400 VALVANCHQMTAVVLLVVVIVTSILSVML 428 (447)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 428 (447)
+++.+..+....+.+.+++.++..+...+
T Consensus 365 G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 365 GNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 98888766556666666666665554443
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.9e-16 Score=154.35 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------------------
Q 013219 44 LSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------------------------------- 90 (447)
Q Consensus 44 ~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------------------------------- 90 (447)
+.+..+.+++++++++.+.|++.+...++..+.+++.|+++||+|||
T Consensus 30 ~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 109 (400)
T PRK11646 30 FPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILS 109 (400)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44555566788999999999999999999999999999999999999
Q ss_pred -------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-HHhhcccC
Q 013219 91 -------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPE 161 (447)
Q Consensus 91 -------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpE 161 (447)
.+...+++.|+.|+++||+..++.+...++|..+++.++..+. +++||..|++.++..++.. +..+++||
T Consensus 110 g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 110 GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 1222345679999999999999999999999999888876665 6799999998877665543 33445565
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-16 Score=155.60 Aligned_cols=290 Identities=18% Similarity=0.175 Sum_probs=169.8
Q ss_pred HHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------------------------------
Q 013219 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------------------- 91 (447)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------------------- 91 (447)
..+...|.+++++|++.++.+++.++..++..+++++.|+++||+|||.
T Consensus 18 ~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 97 (355)
T TIGR00896 18 SVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALI 97 (355)
T ss_pred cCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4456778899999999999999999999999999999999999999991
Q ss_pred --------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC--CchHHHHhhhHHHHHHHHHhhcccC
Q 013219 92 --------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL--DWRWLLGLSSIPSFILLAFLGFQPE 161 (447)
Q Consensus 92 --------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~--~WR~~~~~~~i~~~i~~~~~~~lpE 161 (447)
+....++.|+.| ++|++..+..+....+|..+++.+...+..+. +||..+.+.++..++.. ..++||
T Consensus 98 g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~ 174 (355)
T TIGR00896 98 GVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQ 174 (355)
T ss_pred HHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhh
Confidence 111223458776 58999999999999999988877665543332 49998877655444322 233454
Q ss_pred ChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh
Q 013219 162 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK 241 (447)
Q Consensus 162 SP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (447)
+++ +.+ .+. +. . .. ..+++++++
T Consensus 175 ~~~------~~~-----------~~~----------------~~------------------~--~~----~~~~~~~~~ 197 (355)
T TIGR00896 175 VRR------RVA-----------ANQ----------------TT------------------T--RL----TPVRIWRSP 197 (355)
T ss_pred hcc------ccC-----------CCC----------------CC------------------C--CC----CCchhhcCH
Confidence 321 000 000 00 0 00 011123332
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhh-Chh
Q 013219 242 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRK 320 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~-GRr 320 (447)
.... .....+.....+++...+.|..... .+.+.........+..+..+++.++.+++.||+ +||
T Consensus 198 ~~~~---~~~~~~~~~~~~~~~~~~lp~~~~~-----------~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~ 263 (355)
T TIGR00896 198 LAWQ---VTVFFGLQSGLYYSLIGWLPAILIS-----------HGASAATAGSLLALMQLAQAASALLIPALARRVKDQR 263 (355)
T ss_pred hHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccch
Confidence 2111 1112222333444444444432211 011111112223445677889999999999999 566
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcc-ccCCcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 321 LSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAA-EIYPTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
+.+.++..++.+..+.+....+..... ......++....++....... +..+.+.+++..++.+.++.+++.++|.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~ 342 (355)
T TIGR00896 264 GIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFV 342 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666555554444433333322221111 111222222222333344444 444567889999999999999999999999
Q ss_pred HHHHhhch
Q 013219 400 VALVANCH 407 (447)
Q Consensus 400 ~~l~~~~~ 407 (447)
+++.+..+
T Consensus 343 G~l~~~~g 350 (355)
T TIGR00896 343 GVLHDISG 350 (355)
T ss_pred HHHHHHhc
Confidence 88776544
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-15 Score=149.24 Aligned_cols=326 Identities=12% Similarity=-0.003 Sum_probs=188.3
Q ss_pred HHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHH--HHHHHHHhHhhhHH-HHhhhhhCCcchh----------
Q 013219 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLIT--TSVFAGLVVGAYAW-GLVADNYGRSGHV---------- 93 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~--s~~~~G~~iG~l~~-G~l~Dr~GRr~~~---------- 93 (447)
.+.+...++.++..........|.+-++.+++.++.|++. ++..+..++.+.+. ++..||+|||...
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 3445566788888877777788888899999999999974 55577776777777 5578999998110
Q ss_pred -----------------------------------hhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCc
Q 013219 94 -----------------------------------FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 138 (447)
Q Consensus 94 -----------------------------------~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~W 138 (447)
.-.+..|..+++.|+...+....+..+|.+++......+..+.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 001234888888888888888888888988887666555567899
Q ss_pred hHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccC
Q 013219 139 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSS 218 (447)
Q Consensus 139 R~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (447)
|.+|++.++..++..+..++++|.++ .+.++.
T Consensus 163 ~~~f~~~a~l~~~~~~~~~~~~~~~~-----~~~~~~------------------------------------------- 194 (390)
T TIGR02718 163 RPAFLLVACVPLASLVCVLWLKDRAV-----ASPEAP------------------------------------------- 194 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCc-----Cccccc-------------------------------------------
Confidence 99999988877665555555544321 000000
Q ss_pred CCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHH
Q 013219 219 NGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFI 298 (447)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 298 (447)
. +...+.+++++++..+..+............+|+.. .+.+.+ .+.+.........+
T Consensus 195 -----~----~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l~~------------~G~s~~~ig~~~~~ 251 (390)
T TIGR02718 195 -----L----ARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS--KLYLVD------------AGWPLEWIGRLGMA 251 (390)
T ss_pred -----h----hhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh--hHHHHh------------cCCCHHHHHHHHhH
Confidence 0 000123445555443333333322222222222211 111111 11111111111122
Q ss_pred HH-hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHH-HHHhh----hh-hHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 299 TS-LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLP-LVTYQ----SN-ILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 299 ~~-~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~-l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.. ...+++.++.+++.||+|+|+.+..+.....+..+. ..... .. ...........++.....+.......+.
T Consensus 252 ~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 331 (390)
T TIGR02718 252 GGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRF 331 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 345667889999999999999887766544222211 11111 01 1111111111111122223445555566
Q ss_pred CCc-chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 013219 372 YPT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSI 423 (447)
Q Consensus 372 fP~-~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~ 423 (447)
.+. +.|++..++.+....+++.++|.+.+++.+..+....+...+.+.+++.
T Consensus 332 ~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~ 384 (390)
T TIGR02718 332 AGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAI 384 (390)
T ss_pred hCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 665 8999999999999999999999999888776554444555554445443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=159.46 Aligned_cols=141 Identities=21% Similarity=0.262 Sum_probs=121.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------- 90 (447)
++.+++..+...++++|+..+..+.+..+..+|++++..|++++.+.++.++.+.++|+++|||-||
T Consensus 32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A 111 (493)
T KOG1330|consen 32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA 111 (493)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence 4444455577899999999999999999999999999999999999999999999999999999999
Q ss_pred ---------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCC-chHHH
Q 013219 91 ---------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-WRWLL 142 (447)
Q Consensus 91 ---------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~-WR~~~ 142 (447)
.+++++.+++.+|..+|+++.++++...++|..++.+++..+....+ ||+-|
T Consensus 112 v~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af 191 (493)
T KOG1330|consen 112 VFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF 191 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE
Confidence 46667788999999999999999999999999988877766554444 99999
Q ss_pred HhhhHHHHHHHHH-hhcccCChH
Q 013219 143 GLSSIPSFILLAF-LGFQPESPR 164 (447)
Q Consensus 143 ~~~~i~~~i~~~~-~~~lpESP~ 164 (447)
.+.++.+++..++ +++.+|.+|
T Consensus 192 ~~~avl~vi~~~L~~~f~~eP~r 214 (493)
T KOG1330|consen 192 RGSAVLGVIVGLLVFLFVREPER 214 (493)
T ss_pred EeehHHHHHHHHHHHhhccCccc
Confidence 9999998887555 556677553
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-15 Score=147.33 Aligned_cols=306 Identities=8% Similarity=-0.057 Sum_probs=170.3
Q ss_pred HhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------------------------
Q 013219 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------------------------------- 90 (447)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------------------------------- 90 (447)
....|.+.++++.|..+.|++.+++.++..++++++|++.||+|||
T Consensus 24 ~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l 103 (382)
T PRK11128 24 LPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGL 103 (382)
T ss_pred hhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3334556678899999999999999999999999999999999994
Q ss_pred --------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCC
Q 013219 91 --------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 162 (447)
Q Consensus 91 --------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpES 162 (447)
.+...++..++ +++|++..+..+...++|..++++++..+..+.+||.++++.++..++..+...+.||.
T Consensus 104 ~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 181 (382)
T PRK11128 104 FNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI 181 (382)
T ss_pred HHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence 00001122344 34577777777777788988888888777777899999987776544444333444543
Q ss_pred hHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhh
Q 013219 163 PRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKL 242 (447)
Q Consensus 163 P~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (447)
++ +++.+ + + .++ ...+++++++++.
T Consensus 182 ~~----~~~~~-------------------------------~----------------~-~~~---~~~~~~~i~~~~~ 206 (382)
T PRK11128 182 MP----QGESR-------------------------------Q----------------Q-ESA---GWPAWKALLKEPT 206 (382)
T ss_pred CC----ccccc-------------------------------c----------------c-ccc---ccchHHHHHcChh
Confidence 11 00000 0 0 000 0013445555543
Q ss_pred hhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhH
Q 013219 243 ARTTILLWL-LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKL 321 (447)
Q Consensus 243 ~~~~~~~~~-~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~ 321 (447)
........+ ..... ..++. +.+..... .+.+....-....+..+..+++.++.+++.||+|+|+
T Consensus 207 ~~~~~~~~~l~~~~~-~~~~~---~~~~~~~~-----------~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~ 271 (382)
T PRK11128 207 VWRFLLCVSLLQGSH-AAYYG---FSAIYWQA-----------AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD 271 (382)
T ss_pred HHHHHHHHHHHHHHh-HhHHH---HHHHHHHH-----------CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Confidence 332222211 11111 11111 11111100 0111111111222445677788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHh-HhHhHHHHHHH
Q 013219 322 SITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAV 400 (447)
Q Consensus 322 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~-i~~~~~~~~~~ 400 (447)
.+..+.....+..+.+....+.+......+...++.....+....+..+.-|.+ +++..++.+..+. ++..++|.+.+
T Consensus 272 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~ig~~i~G 350 (382)
T PRK11128 272 LLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARPGSE-VIRLQALYSALAMGGSIAIMTVLSG 350 (382)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHhh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987777665555444433333222221111111111112233445566664444 6788888775544 56678898888
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHH
Q 013219 401 ALVANCHQMTAVVLLVVVIVTSIL 424 (447)
Q Consensus 401 ~l~~~~~~~~~~~~~~~~~~i~~i 424 (447)
.+.+..+. ..++..+.+.+++.+
T Consensus 351 ~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 351 FLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHHHhccH-HHHHHHHHHHHHHHH
Confidence 88776553 345545545444433
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=168.71 Aligned_cols=313 Identities=13% Similarity=-0.036 Sum_probs=182.2
Q ss_pred HHHhhHHHHHHHHHHHHHhhc-ccccccccCCC-cchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc--------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVG-PTVKSEWNLSS-TEESLITTSVFAGLVVGAYAWGLVADNYGRSG-------------- 91 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~-------------- 91 (447)
+...++.+.|.++...+.+.. ..+..+.+.+. ...++..+++.+++++.+++.|+++||+|||.
T Consensus 18 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~ 97 (1140)
T PRK06814 18 WTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAA 97 (1140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHH
Confidence 344455666777666555443 34444444333 34678888999999999999999999999981
Q ss_pred -----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHH
Q 013219 92 -----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLL 142 (447)
Q Consensus 92 -----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~ 142 (447)
+...+++.|+.|+++|+.+.++.+...++|.+++++++.++....+||..|
T Consensus 98 ~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~ 177 (1140)
T PRK06814 98 LAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV 177 (1140)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 122234569999999999999999999999999999988877778999999
Q ss_pred HhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCC
Q 013219 143 GLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGN 222 (447)
Q Consensus 143 ~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (447)
.+.++..++.++..+++||+|.= .+++..+ .
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------------------~----------------- 208 (1140)
T PRK06814 178 ALLMGIAVLGWLASLFIPKTGNA--APDLKID------------------------------R----------------- 208 (1140)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCC--CCCCeec------------------------------c-----------------
Confidence 66666666666666677776520 0000000 0
Q ss_pred CCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhh
Q 013219 223 KTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLA 302 (447)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 302 (447)
...+.....++.+++++..+...+.. +...+.++....+.+..... ..+.+............++
T Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~----------~~g~~~~~~g~~~~~~~~g 273 (1140)
T PRK06814 209 --NIIRSTITLLKYAKADKRIWLAILGI---SWFWLVGAVVLSQLPLLAKE----------TLGGDENVATLFLAVFSVG 273 (1140)
T ss_pred --chHHHHHHHHHHHhcCchHHHHHHHH---HHHHHHHHHHHHHhHHHHHH----------HcCCchHHHHHHHHHHHHH
Confidence 00000011334444443322222211 11111222222222221100 0011111112223444667
Q ss_pred hhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--------------------hhhhHHHHHHHHHHHHHhhhhh
Q 013219 303 EIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--------------------QSNILTTGLLFGARMCVMGAFT 362 (447)
Q Consensus 303 ~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--------------------~~~~~~~~~~~~~~~~~~~~~~ 362 (447)
.++|.++.+++.|+.++++.+..+.++.+++.+.+... .+.+...+..+...++......
T Consensus 274 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (1140)
T PRK06814 274 VAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIV 353 (1140)
T ss_pred HHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHH
Confidence 78889999999988776655444443333322222211 1111111112222222222334
Q ss_pred hhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 363 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 363 ~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
....+..|..|.+.|++++|+.+.++.++..+++.+.+.+..
T Consensus 354 ~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~ 395 (1140)
T PRK06814 354 PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQA 395 (1140)
T ss_pred HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999888776653
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.2e-13 Score=135.03 Aligned_cols=341 Identities=18% Similarity=0.188 Sum_probs=177.6
Q ss_pred HhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc------------------
Q 013219 30 AGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------ 91 (447)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------ 91 (447)
+++.+...+.-....+-+.+.+..|++- +.+..|++++..++..++..+.|+++|.+|||.
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at 127 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT 127 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence 3333443444434445556777788874 467789999999999999999999999999990
Q ss_pred ---------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHH
Q 013219 92 ---------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSF 150 (447)
Q Consensus 92 ---------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~ 150 (447)
.+...-++|..|.|.|+...++......+....++.++..+..+.+|||.+++.++...
T Consensus 128 A~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 128 AQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSG 207 (599)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHH
Confidence 11112357999999998887776665555444555555555556799999998877655
Q ss_pred HHHHH--hhcccCChHHHHhcCCh---HHHHHHHHHHHH-------------Hc-CCC--CCCCccccccccCCCCCCCC
Q 013219 151 ILLAF--LGFQPESPRYLCLKGRT---AEAHRALEKIAQ-------------VN-KTK--LPNGKLVARRSTLPTGERAP 209 (447)
Q Consensus 151 i~~~~--~~~lpESP~~L~~~g~~---~~a~~~l~~~~~-------------~~-~~~--~~~~~~~~~~~~~~~~~~~~ 209 (447)
+.++. +++-|. ++-..+++. .+..+.++.+.- .+ +.. .|++.. +...+
T Consensus 208 i~~vl~~~fY~PP--~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa---------~VIa~ 276 (599)
T PF06609_consen 208 IALVLIFFFYFPP--PRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSA---------HVIAP 276 (599)
T ss_pred HHHHHHHHHhCCC--chhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCc---------cchhh
Confidence 54333 334453 332333321 222333332211 11 110 111110 00000
Q ss_pred Ccccc--------cccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCC
Q 013219 210 PELVH--------LLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL-SSLDTRCRSP 280 (447)
Q Consensus 210 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l-~~~~~~~~~~ 280 (447)
-... ..|.. . ..+.+. .-.++|+++ |......++.+.....||+...+.|.. .+..+
T Consensus 277 -lviG~~~Lv~F~~wE~~----~-~~~~Pl-~P~~Lf~~~--r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~----- 342 (599)
T PF06609_consen 277 -LVIGFVLLVAFVVWEWF----G-APKDPL-FPHRLFKDR--RGFAALLVISFISGMNFFSVNILWPQQVVNVFG----- 342 (599)
T ss_pred -HHHHHHHHHHHHHhhhh----c-cCCCCc-CCHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 0000 00000 0 000000 011233321 222223334444555567665444532 21100
Q ss_pred CcccCCCCC-hhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHH-HHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH
Q 013219 281 LMFSHHPQD-ANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSI-TIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMC 356 (447)
Q Consensus 281 ~~~~~~~~~-~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~ 356 (447)
.+... ..........+++...|.++.+.+..+++|-+.. +++.+.+.+++.++... ++......+.+...++
T Consensus 343 ----~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~g 418 (599)
T PF06609_consen 343 ----SDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFG 418 (599)
T ss_pred ----CCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHh
Confidence 00000 0111222344566667778888999988875544 45554444444444332 2222223333344433
Q ss_pred HhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 357 VMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 357 ~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
..+......+.+.-..|.+.-+++.|+..++-.+||.++.-++.
T Consensus 419 iG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 419 IGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33333345666667789999999999888888887777765553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-12 Score=131.42 Aligned_cols=313 Identities=15% Similarity=0.138 Sum_probs=186.2
Q ss_pred hhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------------------------------------chhhhhhh
Q 013219 62 ESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------------------------------GHVFLSWF 98 (447)
Q Consensus 62 ~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------------------------------~~~~~~~~ 98 (447)
.++..++..+-..+-.++.|.++|+-||| .....+|+
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~L 151 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYL 151 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777777788889999999999999 11122355
Q ss_pred hcccCCCCc--------------------------hhHHHHHHHHHhhhhHHHHHHHHHHc--C------CCCchHHHHh
Q 013219 99 LEFVPPSNR--------------------------GMWMVIFSSFWTIGSVSEAIGAWIIM--P------RLDWRWLLGL 144 (447)
Q Consensus 99 ~E~~p~~~R--------------------------g~~~~~~~~~~~iG~l~~~~~~~~~~--~------~~~WR~~~~~ 144 (447)
-|+++++.+ +++.+.-....++|.++.-++...+. . ..+-|..+.+
T Consensus 152 P~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~ 231 (477)
T PF11700_consen 152 PDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLI 231 (477)
T ss_pred HhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHH
Confidence 699999888 99999988888899887766655431 1 1235888887
Q ss_pred hhHHH-HHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCC
Q 013219 145 SSIPS-FILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 223 (447)
Q Consensus 145 ~~i~~-~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (447)
.++.- ++.+...+++||.|+--..+...+-.+...+++.
T Consensus 232 ~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~---------------------------------------- 271 (477)
T PF11700_consen 232 VALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW---------------------------------------- 271 (477)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH----------------------------------------
Confidence 77764 4456777888888752000000000111111111
Q ss_pred CcCCCchhHHHHhhcchhhhhHHHHHHHHHH--HHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHh
Q 013219 224 TTEGKSGLSLFLMLFSSKLARTTILLWLLLF--GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSL 301 (447)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 301 (447)
..++++.+.|...+.++.++++. .+.+...+..+....+ +-+..+.....++..+
T Consensus 272 --------~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l---------------g~s~~~l~~~~l~~~i 328 (477)
T PF11700_consen 272 --------RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL---------------GMSTTQLIVFGLVVQI 328 (477)
T ss_pred --------HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------------CcCHHHHHHHHHHHHH
Confidence 01111111122222233332221 2222222222222211 1222344455677788
Q ss_pred hhhhHHHHHHHHHhhhChh--HHHHHHHHHHHHH-HHHHH-H------hhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 302 AEIPGLLLAAILVDTAGRK--LSITIMFTLSCLF-LLPLV-T------YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr~GRr--~~l~~~~~~~~~~-~~~l~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.+++|.++.+++.||+|-| +++.++.+...+. +..+. . ..+.+...++-+....+..+..+..-.+.+|+
T Consensus 329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~L 408 (477)
T PF11700_consen 329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRL 408 (477)
T ss_pred HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 9999999999999999988 6666555443222 22211 1 12222222222222233344456788999999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ-MTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
-|.+..+.-+|+....++..++++|.+++.+.+..+. ...++...++.+++.++ +..+++.||+.-
T Consensus 409 iP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~l-l~~v~~~~g~~~ 475 (477)
T PF11700_consen 409 IPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLIL-LFFVDVEKGRED 475 (477)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH-Hhhccchhhhhc
Confidence 9999999999999999999999999999887776653 33444455555555544 455677777643
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-12 Score=133.15 Aligned_cols=309 Identities=16% Similarity=0.037 Sum_probs=179.0
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------------------------------
Q 013219 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------- 91 (447)
Q Consensus 53 ~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------- 91 (447)
.+..-|+...+++..+..+..++-+++.|.++||+.||.
T Consensus 38 ~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~ 117 (524)
T PF05977_consen 38 TQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS 117 (524)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH
Confidence 344446677899999999999999999999999999991
Q ss_pred ----hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCChHHHH
Q 013219 92 ----HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPESPRYLC 167 (447)
Q Consensus 92 ----~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~ 167 (447)
|..-+.+-|+.|+++...+.++.+...++..++++.++..+....|=...|.+.++.-++.......++..++
T Consensus 118 a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~--- 194 (524)
T PF05977_consen 118 AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP--- 194 (524)
T ss_pred HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc---
Confidence 1111234599999999999999999888888888777766544455566677665543333222222211110
Q ss_pred hcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHH
Q 013219 168 LKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTI 247 (447)
Q Consensus 168 ~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (447)
+.+ ...++.. +.-...++-+.+++..+..+
T Consensus 195 -~~~-~~~e~~~------------------------------------------------~~l~~G~ryv~~~~~l~~~l 224 (524)
T PF05977_consen 195 -PSS-LPRERFF------------------------------------------------SALREGLRYVRSSPPLRSVL 224 (524)
T ss_pred -ccc-cchhhhh------------------------------------------------hhHHHHHHHHhcchHHHHHH
Confidence 000 0000000 00001222233334434333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHH
Q 013219 248 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMF 327 (447)
Q Consensus 248 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~ 327 (447)
+....+......++. ..|.+... ..+.............+++.++|.++...+.+|+++++++..+.
T Consensus 225 ~~~~~~~l~~~a~~a---LlPl~a~~----------~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~ 291 (524)
T PF05977_consen 225 LRSFLFNLFASAVWA---LLPLFARD----------VLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS 291 (524)
T ss_pred HHHHHHHHhhhHHHH---hhhHHHHH----------HhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence 322222111112222 12222110 01111122222334456777888888888888888888877777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch
Q 013219 328 TLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 328 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~ 407 (447)
++.++.++.+....+.+.....++...++.....+...+..-+..|.++|++..++.......+..++..+.+.+.+..+
T Consensus 292 ~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 292 LLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76666665555544444333333334333333344556777899999999999999998888888888888887777666
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 013219 408 QMTAVVLLVVVIVTSILSVM 427 (447)
Q Consensus 408 ~~~~~~~~~~~~~i~~i~~~ 427 (447)
...++.+.+++.+++.++..
T Consensus 372 ~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 372 VRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555544444444444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-12 Score=130.42 Aligned_cols=342 Identities=14% Similarity=0.055 Sum_probs=184.5
Q ss_pred HHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhh----hhCCcc---------------------h-----
Q 013219 43 ILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRSG---------------------H----- 92 (447)
Q Consensus 43 ~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~D----r~GRr~---------------------~----- 92 (447)
..++..|. ..++++++.+.+++..+..+..++.+++.|.++| |+|||. .
T Consensus 23 ~~~~l~~y-l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~ 101 (477)
T TIGR01301 23 QLSLLTPY-VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLF 101 (477)
T ss_pred HHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhc
Confidence 34455553 4678999999999999999999999999999999 599990 0
Q ss_pred --------------h------------------hhhhhhcccCCCCc--hhHHHHHHHHHhhhhHHHHHHHHHH--c---
Q 013219 93 --------------V------------------FLSWFLEFVPPSNR--GMWMVIFSSFWTIGSVSEAIGAWII--M--- 133 (447)
Q Consensus 93 --------------~------------------~~~~~~E~~p~~~R--g~~~~~~~~~~~iG~l~~~~~~~~~--~--- 133 (447)
. ..+++.|.+|+++| +...++.+.+.++|.++++.++... .
T Consensus 102 ~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~ 181 (477)
T TIGR01301 102 GDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF 181 (477)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc
Confidence 0 01134699999876 5788899999999999988876542 1
Q ss_pred C----C------CCchHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccC
Q 013219 134 P----R------LDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTL 202 (447)
Q Consensus 134 ~----~------~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (447)
+ . .+-|..|++.++..++. ++..+..||.|-. .. ++.. ++|
T Consensus 182 ~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~---~~~~-----------------------~~~ 233 (477)
T TIGR01301 182 PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GS---DDFI-----------------------NSE 233 (477)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--cc---ccch-----------------------hhh
Confidence 1 0 15788999988766665 5556788998731 10 0000 000
Q ss_pred CCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcc--hhhhhHHH-HHHHHHHHH-HHHHHHHHHHHHHhhccccccc
Q 013219 203 PTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFS--SKLARTTI-LLWLLLFGN-SFAYYAVVLLISELSSLDTRCR 278 (447)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~-~~~~~~~~~-~~~~y~~~~~~~~l~~~~~~~~ 278 (447)
.++.. ..+......++.+-++ |+..++.. ..++.|++. .+.+|........+.+....
T Consensus 234 ~~~~~----------------~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~-- 295 (477)
T TIGR01301 234 AAPPS----------------KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVN-- 295 (477)
T ss_pred ccccc----------------ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCc--
Confidence 00000 0000001111111111 23333332 222333321 12223222222222211000
Q ss_pred CCCcccCCCCCh-h-hHHHHHHHHhhhhhHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHhhh-------------
Q 013219 279 SPLMFSHHPQDA-N-LYIDEFITSLAEIPGLLLAAILVDTAG-RKLSITIMFTLSCLFLLPLVTYQS------------- 342 (447)
Q Consensus 279 ~~~~~~~~~~~~-~-~~~~~~i~~~~~i~g~~~~~~l~dr~G-Rr~~l~~~~~~~~~~~~~l~~~~~------------- 342 (447)
. .....+. . --....+.++...+..++--.+.+|+| ||+....+.++.++++....+..+
T Consensus 296 -~---~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~ 371 (477)
T TIGR01301 296 -Q---GAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGE 371 (477)
T ss_pred -c---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccccc
Confidence 0 0000000 0 001122333344455566777888998 467767765544444333221110
Q ss_pred --------hhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh--hhHhhHHHHHHhHhHhHHHHHHHHHHhhch-h-hH
Q 013219 343 --------NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR--STGAGAANAMGRIGGMVCPLVAVALVANCH-Q-MT 410 (447)
Q Consensus 343 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R--~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~-~~ 410 (447)
.....+.+....+......+++|++.+|.-|.+-| +.-+|+.|.+--+.-++.....+.+.+..+ . ..
T Consensus 372 ~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~ 451 (477)
T TIGR01301 372 SLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLP 451 (477)
T ss_pred ccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCee
Confidence 01112222222222233457899999999996555 777788888877666666655544333333 2 23
Q ss_pred HHHHHHHHHHHHHHHHHhccccccC
Q 013219 411 AVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 411 ~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
.+.+-++..+++++++.+++|.++.
T Consensus 452 ~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 452 AFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 3444556678888888888888764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=135.50 Aligned_cols=144 Identities=16% Similarity=0.139 Sum_probs=115.0
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcc-hhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTE-ESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
+.+.+..+++|.+|++.+- |.+.+++.|.+.+++|++++| .|.+.++++.|+++..++.|+++||+|-|
T Consensus 23 ~~W~~~~~~lC~fGF~~e~--R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l 100 (511)
T TIGR00806 23 KSWRVLVLYLCFYGFMAQF--RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQAL 100 (511)
T ss_pred cchhHHHHHHHHHHHHHHh--hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 4566666677777765543 678899999999999999999 99999999999999999999999999999
Q ss_pred -------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCch
Q 013219 91 -------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWR 139 (447)
Q Consensus 91 -------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR 139 (447)
......|+..|+|+++|+++.++.+.+..+|.+++++++-. ...++||
T Consensus 101 ~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr 179 (511)
T TIGR00806 101 SFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWI 179 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCch
Confidence 11334567899999999999999999999999999888766 3467999
Q ss_pred HHHHhh---hHHHHHHHHHhhcccCChHHH
Q 013219 140 WLLGLS---SIPSFILLAFLGFQPESPRYL 166 (447)
Q Consensus 140 ~~~~~~---~i~~~i~~~~~~~lpESP~~L 166 (447)
...-+. .....+.++.-+++|--+|=+
T Consensus 180 ~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl 209 (511)
T TIGR00806 180 SYSTLNIISLVFMTFSVFLALFLKRPKRSL 209 (511)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCCCchhh
Confidence 866543 334444566678888544433
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-14 Score=141.60 Aligned_cols=384 Identities=15% Similarity=0.078 Sum_probs=208.5
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch-------
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH------- 92 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~------- 92 (447)
|-|-|.+++.+++...+..--...++...+.++++++-++.+.+|+.|+....+.+.+.+.+.+.||+|.|..
T Consensus 41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v 120 (509)
T KOG2504|consen 41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLV 120 (509)
T ss_pred CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHH
Confidence 4455666666655554433334556666788889999999999999999999999999999999999999910
Q ss_pred ----------------------------------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCc
Q 013219 93 ----------------------------------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 138 (447)
Q Consensus 93 ----------------------------------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~W 138 (447)
-+.+.+..++ +|+|+.+.++...+..+|.++-+.+.-.+....||
T Consensus 121 ~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~ 199 (509)
T KOG2504|consen 121 AALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGW 199 (509)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCc
Confidence 0111233444 56699999999999999998877777666677899
Q ss_pred hHHHHhhhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCcccccccc-CCCCCC-CCCccccc
Q 013219 139 RWLLGLSSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRST-LPTGER-APPELVHL 215 (447)
Q Consensus 139 R~~~~~~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~ 215 (447)
|..+++.+...+-.. .....-|.+|+-... .++..+. ..+ ..+....+....... .....+ ...+.+..
T Consensus 200 r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (509)
T KOG2504|consen 200 RGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRN---SAA--SVESTPKPVELRISERDSGLKKLSLSNLATL 271 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhcc---ccc--cccccccccccccccCCCCCCcccccchhhh
Confidence 999887666554443 334455655542111 1111111 000 000000000000000 000000 00000000
Q ss_pred ccCCCCCCCcCCCchhH-HHHhhcchhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhH
Q 013219 216 LSSNGGNKTTEGKSGLS-LFLMLFSSKLARTTILLWL-LLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLY 293 (447)
Q Consensus 216 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~-~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
.+.+++......+.... .-.++++. ++.+++. -.....+.|+...++.+..... .........
T Consensus 272 ~~~~~~~~~~~~~~~~~~~d~~ll~~----~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~-----------~g~~~~~aa 336 (509)
T KOG2504|consen 272 KRGPDKWRNSPLQAFLSMLDLSLLKD----PKFLLLALSNLFAYLGFNVPFVYLPSYAKS-----------LGLSSNDAA 336 (509)
T ss_pred hhCCccccccchhhhhhhhhHHHHcC----chHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------cCCChhhhH
Confidence 00000000000000000 00233433 1222222 1222334444444444433211 111112223
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhCh--hHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGR--KLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GR--r~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
....+.++..++|-++.|++.|+... +.....+.+++++..+.+....+......+.....++.....+....+..|+
T Consensus 337 ~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~ 416 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDL 416 (509)
T ss_pred HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455688899999999999999883 3444556666565553333333222112111122222222223455799999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHH
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVM 427 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~i~~~ 427 (447)
.+.+-=+.+.|+...+..++..++|.+.+++.+..+.+. .+...+.+.+++..+..
T Consensus 417 ~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 417 VGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred cChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 999999999999999999999999999987777665443 34444444455544433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.8e-12 Score=122.81 Aligned_cols=305 Identities=14% Similarity=0.134 Sum_probs=181.0
Q ss_pred HHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------
Q 013219 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------ 90 (447)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------ 90 (447)
++...++.-++.........|.+++.|+++..|.+++..+++.|+.+++++.|++.+|+|+|
T Consensus 17 ~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~ 96 (422)
T COG0738 17 LLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW 96 (422)
T ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 33344455555555666778999999999999999999999999999999999999999999
Q ss_pred -------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCC----------
Q 013219 91 -------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPR---------- 135 (447)
Q Consensus 91 -------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~---------- 135 (447)
.+.+..|+.-..|++.-..-.++.|.+..+|.+++++++..+..+
T Consensus 97 pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~ 176 (422)
T COG0738 97 PAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQ 176 (422)
T ss_pred hhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHH
Confidence 122334667888888778888999999999999988876443210
Q ss_pred ---------CCchHHHHhhhHHHHHHHHHhh--cccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCC
Q 013219 136 ---------LDWRWLLGLSSIPSFILLAFLG--FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPT 204 (447)
Q Consensus 136 ---------~~WR~~~~~~~i~~~i~~~~~~--~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
..||.++...+...++..+... .+||-+ . .
T Consensus 177 ~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~-------------------------------~--------~ 217 (422)
T COG0738 177 ILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQ-------------------------------V--------A 217 (422)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCC-------------------------------c--------c
Confidence 1255555544333333222211 111100 0 0
Q ss_pred CCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHhhcccccccCCCc
Q 013219 205 GERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYA--VVLLISELSSLDTRCRSPLM 282 (447)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~--~~~~~~~l~~~~~~~~~~~~ 282 (447)
+ ++..+++ .....+++++++.+.-.+..+.+.+.....+. +.+... ..
T Consensus 218 ~----------------~~~~~~~--~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~-~~----------- 267 (422)
T COG0738 218 A----------------PSLGASG--SAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEE-LL----------- 267 (422)
T ss_pred c----------------ccccccc--cchHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-cC-----------
Confidence 0 0000000 00344567777666555554444443332222 111111 00
Q ss_pred ccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhh
Q 013219 283 FSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFT 362 (447)
Q Consensus 283 ~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (447)
..+..... +. ....-.+..+|-+++.+++.|+...+.+.....+....++......+. .....++...+++...++
T Consensus 268 -g~~~~~aa-~~-~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~-v~~~~l~~ig~F~simfP 343 (422)
T COG0738 268 -GLNEQQAA-YY-LSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIGGV-VALYALFLIGLFNSIMFP 343 (422)
T ss_pred -CccHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHhHHHHH
Confidence 00111111 21 223345567788899999999987777766555444444333333332 223333344445666788
Q ss_pred hhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchh
Q 013219 363 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ 408 (447)
Q Consensus 363 ~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~ 408 (447)
..+....+..|.+.- ..|..-+++-+||.+.|.+.+++.+..+.
T Consensus 344 TIfslal~~l~~~ts--~~s~~l~maivGGAiiP~l~G~i~d~~g~ 387 (422)
T COG0738 344 TIFSLALKNLGEHTS--VGSGLLVMAIVGGAIIPPLQGVIADMFGI 387 (422)
T ss_pred HHHHHHHhccCcccc--ccceeeeeheecchHHHHHHHHHHHhhhh
Confidence 889999999994333 33344445557889999999887665543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.3e-11 Score=121.91 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=87.3
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHH----HHHHHhhhhhhhHhhcccc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-QSNILTTGLLFG----ARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~El 371 (447)
.+..+.+++...+.+++..|+|-|+++.++.+...+=....... ++.......... -.......+.....|..|.
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~ 329 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRI 329 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence 35567889999999999999999999888777655433333333 222221211111 1111122334567899999
Q ss_pred CCcchhhhHhhHHHHHH-hHhHhHHHHHHHHHHhhchhhH------HHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMG-RIGGMVCPLVAVALVANCHQMT------AVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~-~i~~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|.+.|+++.++.+.+. .+++.+++.+.+++.+..+... .+.+.+++.++..++.+++.+|+
T Consensus 330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999887765 4899999999998888655322 22334444444444444444444
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-12 Score=132.06 Aligned_cols=160 Identities=14% Similarity=0.102 Sum_probs=104.4
Q ss_pred CCc-hHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----
Q 013219 18 GFG-KYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----- 91 (447)
Q Consensus 18 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----- 91 (447)
+.+ +.+|.++..........+. ...++...|.+++++|+|..+.+++.++. ....+++++.|+++||+|||.
T Consensus 20 ~~~e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig 97 (591)
T PTZ00207 20 PINEPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLS 97 (591)
T ss_pred cccccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 344 3445544443333333322 34566777899999999999999888763 334456778999999999990
Q ss_pred -------------h----------------------------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHH
Q 013219 92 -------------H----------------------------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAW 130 (447)
Q Consensus 92 -------------~----------------------------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~ 130 (447)
. .....+.+|+| ++||++.++...+.++|..+.+.+..
T Consensus 98 ~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~ 176 (591)
T PTZ00207 98 MTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQL 176 (591)
T ss_pred HHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01123459987 77999999999999999976444433
Q ss_pred HHcCCCCchHHHHhhhHHHHH-HHHH--hhcccCChHHHHhcCChHHHHHHHHH
Q 013219 131 IIMPRLDWRWLLGLSSIPSFI-LLAF--LGFQPESPRYLCLKGRTAEAHRALEK 181 (447)
Q Consensus 131 ~~~~~~~WR~~~~~~~i~~~i-~~~~--~~~lpESP~~L~~~g~~~~a~~~l~~ 181 (447)
.+.. .+|+..+++.++.+++ .++. ....||+|+|...++|.+++++..++
T Consensus 177 ~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~ 229 (591)
T PTZ00207 177 AFFS-DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRL 229 (591)
T ss_pred HHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHh
Confidence 2222 4688877765554443 3333 34568899987677666666666444
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.7e-14 Score=147.23 Aligned_cols=137 Identities=16% Similarity=0.163 Sum_probs=104.6
Q ss_pred hcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-----------------------------------
Q 013219 47 VGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------- 91 (447)
Q Consensus 47 ~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------- 91 (447)
..+.++++++++..+.++..+...+|..+|+++.|+++||+|||.
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML 352 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 333345667888877788888899999999999999999999990
Q ss_pred --------hhhhhhhhcccCCCCchhHHHH-HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCC
Q 013219 92 --------HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 162 (447)
Q Consensus 92 --------~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpES 162 (447)
.....+..|.+|++.||+..++ ++.+...|.+...++++......+|+.++++..+++++.++..+++|||
T Consensus 353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 0011234599999999998885 6666666655444444444333468988888888888877777888999
Q ss_pred hHHHHhc-----CChHHHHHHHHHHH
Q 013219 163 PRYLCLK-----GRTAEAHRALEKIA 183 (447)
Q Consensus 163 P~~L~~~-----g~~~~a~~~l~~~~ 183 (447)
|+|+..| ||.|||+++++|++
T Consensus 433 ~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 433 ANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred cCCCCCCccccccchhhHHHHhhccc
Confidence 9999865 99999999999885
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-13 Score=137.97 Aligned_cols=328 Identities=11% Similarity=0.068 Sum_probs=180.9
Q ss_pred HHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhC-----Cc---------c-
Q 013219 27 LAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG-----RS---------G- 91 (447)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~G-----Rr---------~- 91 (447)
+.++...++..+..........|.+++++++++++.+...++..+...+-.+ +|+++||++ || .
T Consensus 28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~ 106 (468)
T TIGR00788 28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGS 106 (468)
T ss_pred HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHH
Confidence 3444456777888744445667888888999999999999999999999877 999999998 55 0
Q ss_pred --------------------------------hhhhhhhhcccCCCCchhHHH---HHHHHHhhhhHHHHHHHHHHcCCC
Q 013219 92 --------------------------------HVFLSWFLEFVPPSNRGMWMV---IFSSFWTIGSVSEAIGAWIIMPRL 136 (447)
Q Consensus 92 --------------------------------~~~~~~~~E~~p~~~Rg~~~~---~~~~~~~iG~l~~~~~~~~~~~~~ 136 (447)
+..-.+..|..+ +.++...+ .......+|.++++.++..+....
T Consensus 107 ~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~ 185 (468)
T TIGR00788 107 AILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT 185 (468)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 000113458888 54444332 333334578888887777666667
Q ss_pred CchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccc
Q 013219 137 DWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLL 216 (447)
Q Consensus 137 ~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (447)
+||..+++.+...++..+...++||.+... ..+..++......+.. ...
T Consensus 186 ~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~-~~~~~~~~~~~~~~~~-----------------------------~~~- 234 (468)
T TIGR00788 186 LTRILFLITAALLLLQLFVSNLSKERRAFV-RPRIGTYLEMNMALLT-----------------------------LGV- 234 (468)
T ss_pred CcchHHHHHHHHHHHHHHHHHhcccccccc-cccccccchhhhhhhh-----------------------------hhH-
Confidence 999999988777776666677888864210 0000000000000000 000
Q ss_pred cCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHH
Q 013219 217 SSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDE 296 (447)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (447)
.+..++...+.+..++++...+.++..+. + |.. .+...+.... ... ...+.+........
T Consensus 235 -------~~~~~~~~~~l~~~l~~~~i~~~l~fifl---~---~~~----~~~~~~~~f~-~~~--~~lG~s~~~~G~~~ 294 (468)
T TIGR00788 235 -------LANVKVQILGLRGAIQLLEIAKPLIFIFL---S---YAN----LPGASGSVFC-ATT--QCLPGGPSFSGMSK 294 (468)
T ss_pred -------HHHHHHHHHHHHHHHhcHHHHHHHHHHHH---H---Hhh----cCCCCceeEE-EEc--ccCCCCcchhhhHH
Confidence 00000011122233333322221111111 0 100 0100000000 000 01112222223334
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-----h-----hhhhHHHHHHHHHHHHHhhhhhhhHh
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----Y-----QSNILTTGLLFGARMCVMGAFTVSLI 366 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (447)
.+.+++.+++..+.+.+.+|++.|+.+.++.+...+..+.... . .+............++....+.....
T Consensus 295 ~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~ 374 (468)
T TIGR00788 295 VVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLV 374 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHH
Confidence 4556788889999999999999999888777665544322110 0 01111111111111121222334588
Q ss_pred hccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch
Q 013219 367 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH 407 (447)
Q Consensus 367 ~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~ 407 (447)
+..|+-|.+.+++.+++.+.+..+++.+++.+.+.+.+..+
T Consensus 375 ~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 375 LLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999977776666544
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-12 Score=130.00 Aligned_cols=107 Identities=13% Similarity=0.098 Sum_probs=79.5
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hCCc----------------------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRS---------------------------------- 90 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~GRr---------------------------------- 90 (447)
+..+.+.+++|+++.+.+++.+.+........+++|+++|| +|||
T Consensus 43 ~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~ 122 (500)
T PRK09584 43 IMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATI 122 (500)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455567899999888888877765555556789999999 5999
Q ss_pred -------chhhhhhhhcccCCCC--chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH
Q 013219 91 -------GHVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 152 (447)
Q Consensus 91 -------~~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~ 152 (447)
.+...+++.|+.|++. |+...++++.+.++|..+++.+...+..+.|||+.|++.++..++.
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 1111234569998654 4456778889999999999888877777789999999887654443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.4e-12 Score=128.07 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=83.6
Q ss_pred cccc--ccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hCCc-------------------------------------
Q 013219 51 VKSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRS------------------------------------- 90 (447)
Q Consensus 51 ~~~~--~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~GRr------------------------------------- 90 (447)
+.++ +|++..+.+++.+.+.+++.++++++|+++|| +|||
T Consensus 37 l~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~ 116 (475)
T TIGR00924 37 LVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGS 116 (475)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhcc
Confidence 3444 89999999999999999999999999999999 8999
Q ss_pred ---chhhhhhhhcccCCCC---chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH
Q 013219 91 ---GHVFLSWFLEFVPPSN---RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 152 (447)
Q Consensus 91 ---~~~~~~~~~E~~p~~~---Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~ 152 (447)
.+...++++|+.|+++ |+...++.+...++|..+++.+...+..+.+||..|.+.++..++.
T Consensus 117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~ 184 (475)
T TIGR00924 117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIG 184 (475)
T ss_pred ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 1122335568888764 8889999999999999999888777767779999999877644443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-12 Score=128.98 Aligned_cols=289 Identities=11% Similarity=0.009 Sum_probs=162.4
Q ss_pred HhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh----hCCcch----------------------------
Q 013219 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRSGH---------------------------- 92 (447)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr----~GRr~~---------------------------- 92 (447)
.+..+.+.++++++..+.|.+.++.-+...+..++.|.++|| +|||.+
T Consensus 30 ~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~ 109 (444)
T PRK09669 30 LFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI 109 (444)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence 344555667789999999999999999999999999999998 888600
Q ss_pred -------------------hhhhhhhccc-CCCCchhHHHHHHHHHhhhhHHHHHHHHH----Hc---CCCCchHHHHhh
Q 013219 93 -------------------VFLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWI----IM---PRLDWRWLLGLS 145 (447)
Q Consensus 93 -------------------~~~~~~~E~~-p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~----~~---~~~~WR~~~~~~ 145 (447)
-..++..|+. ++++|+++.+.-..+..+|..+++.+... +. .+.+||..+.+.
T Consensus 110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~ 189 (444)
T PRK09669 110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence 0001235887 55789988888888888877665543221 21 135799888776
Q ss_pred hHHHHHHHHH-hhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCC
Q 013219 146 SIPSFILLAF-LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKT 224 (447)
Q Consensus 146 ~i~~~i~~~~-~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (447)
++..++..+. .+..+|.++ + + ++
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~--------------------------~----------~-~~------------------- 213 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYT--------------------------P----------E-VD------------------- 213 (444)
T ss_pred HHHHHHHHHHHhCCeEEecC--------------------------C----------C-Cc-------------------
Confidence 6655554333 333333110 0 0 00
Q ss_pred cCCCchhHHHHhhcchhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhh
Q 013219 225 TEGKSGLSLFLMLFSSKLARTTILLWLLL-FGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAE 303 (447)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 303 (447)
++.+....++.+++++..+..+...+.. ...... .+...+ ... ...+..+.... ......+..
T Consensus 214 -~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~-~~~~~y---~~~----------~~~~~~~~~~~-~~~~~~i~~ 277 (444)
T PRK09669 214 -NSSSVWKDLKLLLGNSQWRIMFIFNVVLLTAVVTR-GGATLY---YVN----------YVLLRPDLATL-FLVTGMIAG 277 (444)
T ss_pred -CCCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-hhhhhe---eee----------eecCCHHHHHH-HHHHHHHHH
Confidence 0001123455566665544443322211 111111 011000 000 00011111111 112234556
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-hh-hhhHHHHHHHHHHHHHhhhhhhhHhhccccCC-------c
Q 013219 304 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-YQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-------T 374 (447)
Q Consensus 304 i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-------~ 374 (447)
+++..+.+++.||+|+|+.+..+..+..+..+.+.. .. +.....+..+...+......+..+.+.+|+.+ .
T Consensus 278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~ 357 (444)
T PRK09669 278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGR 357 (444)
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 678888899999999999887766544432222222 11 22222222222333334445678889998886 3
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
+..+...|+.+.+.+++..+++.+.+.+++.
T Consensus 358 r~~g~~~s~~~~~~klg~alg~~i~g~ll~~ 388 (444)
T PRK09669 358 RLDGLVFSTNLFAIKLGLAIGGAVVGWILAW 388 (444)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667888888899999999888776653
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-13 Score=138.90 Aligned_cols=135 Identities=13% Similarity=0.106 Sum_probs=109.1
Q ss_pred HHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------- 90 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------- 90 (447)
+.+.+..+....+...++.+.|+++++|++++.+.|++.|.+.+|+++++++.|+++||+|||
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~ 115 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLL 115 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHH
Confidence 444456777778788888899999999999999999999999999999999999999999998
Q ss_pred -chh---------------------------------------------------h----------------------hh
Q 013219 91 -GHV---------------------------------------------------F----------------------LS 96 (447)
Q Consensus 91 -~~~---------------------------------------------------~----------------------~~ 96 (447)
.+. . .+
T Consensus 116 alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~ 195 (633)
T TIGR00805 116 SLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGIS 195 (633)
T ss_pred hChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCch
Confidence 110 0 12
Q ss_pred hhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC----------------------CchHHHHhhhHHHHHHHH
Q 013219 97 WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL----------------------DWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 97 ~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~----------------------~WR~~~~~~~i~~~i~~~ 154 (447)
|+.|+.|+++|+...++.+....+|..++++++..+...+ +||..|++.++++++..+
T Consensus 196 ~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v 275 (633)
T TIGR00805 196 YIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSI 275 (633)
T ss_pred hhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4459999999999999999999999998887765543211 288889988888877766
Q ss_pred HhhcccCC
Q 013219 155 FLGFQPES 162 (447)
Q Consensus 155 ~~~~lpES 162 (447)
..+++|+.
T Consensus 276 ~l~~~p~~ 283 (633)
T TIGR00805 276 PFFFFPKA 283 (633)
T ss_pred HHHhCccc
Confidence 66677765
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-11 Score=123.65 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=82.6
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hCCc----------------------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRS---------------------------------- 90 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~GRr---------------------------------- 90 (447)
+....+++++|++.++.+++.+.+.....+..+++|+++|| +|||
T Consensus 36 ~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~ 115 (489)
T PRK10207 36 ILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTI 115 (489)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34455567899999999999999988778888899999999 9999
Q ss_pred -------chhhhhhhhcccCCCC--chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhH
Q 013219 91 -------GHVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 147 (447)
Q Consensus 91 -------~~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i 147 (447)
.+...+.+.|..|++. |+...+++....++|..+++.++.++..+.|||+.|++..+
T Consensus 116 ~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i 181 (489)
T PRK10207 116 AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA 181 (489)
T ss_pred HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence 1222345679999884 57788899999999999988888777777899999998654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-10 Score=110.72 Aligned_cols=139 Identities=11% Similarity=0.060 Sum_probs=91.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
+..+.+++.+.+..++++|+|-|..++++..++.+=....+...+.+..... ..-+.- .-.......-|.++.||+|+
T Consensus 267 ~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e-~~l~lva~fkYI~~~fd~rl 345 (412)
T PF01306_consen 267 VQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALE-FPLLLVAAFKYITAHFDKRL 345 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHS-GGG
T ss_pred HHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCHhH
Confidence 4466889999999999999999999888776655544443433333211111 111100 00112235678999999999
Q ss_pred hhhHhhHHHH-HHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 377 RSTGAGAANA-MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 377 R~~~~g~~~~-~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
.+|...+... ...++.++.+...+++.+..|...+|++.+.+.+...++..+.++..|...
T Consensus 346 sAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 346 SATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 9999999754 445888888888899999887667888888888877777777765554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=120.09 Aligned_cols=105 Identities=18% Similarity=0.141 Sum_probs=80.1
Q ss_pred CCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------------------------------------chhhhhhh
Q 013219 58 SSTEESLITTSVFAGLVVGAYAWGLVADNYGRS---------------------------------------GHVFLSWF 98 (447)
Q Consensus 58 ~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr---------------------------------------~~~~~~~~ 98 (447)
+..-.|.+.|.+.++.++.+..+|.++||+||| ..+..+++
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl~v~rAii 145 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNLSVIRAII 145 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHH
Confidence 444579999999999999999999999999999 12334577
Q ss_pred hcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC---CCC--chH-HHHhhhHHHHH-HHHHhhcccCC
Q 013219 99 LEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP---RLD--WRW-LLGLSSIPSFI-LLAFLGFQPES 162 (447)
Q Consensus 99 ~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~---~~~--WR~-~~~~~~i~~~i-~~~~~~~lpES 162 (447)
+|+.++|+|+..++.++..+.+|.++++.++.++.. ..+ |-. +-++..+.+.. .....+++|||
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 899999999999999999999999999888766432 111 222 23334444444 45567899999
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.3e-11 Score=120.97 Aligned_cols=284 Identities=20% Similarity=0.173 Sum_probs=174.5
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhh----hhCCc--------------------c-h--------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRS--------------------G-H-------- 92 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~D----r~GRr--------------------~-~-------- 92 (447)
+..+-+.+..++++...|.+..+..+-.++-.++.|.++| |+||| . |
T Consensus 23 ~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~ 102 (428)
T PF13347_consen 23 YLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAK 102 (428)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhH
Confidence 4445555677999988888888888888888889999999 89999 0 1
Q ss_pred ---hh-----------------hhhhhcccC-CCCchhHHHHHHHHHhhhhHHHHHHHHHH----cC-C--CCchHHHHh
Q 013219 93 ---VF-----------------LSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWII----MP-R--LDWRWLLGL 144 (447)
Q Consensus 93 ---~~-----------------~~~~~E~~p-~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~----~~-~--~~WR~~~~~ 144 (447)
.. .++..|.++ +++|.+..+.-+.+..+|.++.+.+...+ .. + .+|++...+
T Consensus 103 ~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v 182 (428)
T PF13347_consen 103 LVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALV 182 (428)
T ss_pred HHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHH
Confidence 00 112359998 57899999999999999987555443332 21 1 279999888
Q ss_pred hhHHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCC
Q 013219 145 SSIPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNK 223 (447)
Q Consensus 145 ~~i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (447)
.++..++.. +..+..+|.++ +.++.
T Consensus 183 ~~iv~~v~~~i~~~~~ke~~~------~~~~~------------------------------------------------ 208 (428)
T PF13347_consen 183 LAIVGLVFFLITFFFVKERSV------EVTEQ------------------------------------------------ 208 (428)
T ss_pred HHHHHHHHhhhhhheeeeccc------ccccc------------------------------------------------
Confidence 777766654 44566677000 00000
Q ss_pred CcCCCchhHHHHhhcchhhhhHHHHHHHH-HHHHH-----HHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHH
Q 013219 224 TTEGKSGLSLFLMLFSSKLARTTILLWLL-LFGNS-----FAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEF 297 (447)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~-----~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (447)
+++.+..+.++.++++|..+..+..... +++.. ..||.... +. +....+ ....
T Consensus 209 -~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~v----l~--------------~~~~~~--~~~~ 267 (428)
T PF13347_consen 209 -EKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYV----LG--------------NEGLIS--IFML 267 (428)
T ss_pred -ccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHH----hc--------------CchhhH--HHHH
Confidence 0000001234556666554444433222 22221 22222211 11 111111 1123
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc-
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT- 374 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~- 374 (447)
+..+..+++..+.++++||+|+|+.+..+..+.++..+.+.+.. +.+...+.......+....+..++.+.+|+.+.
T Consensus 268 ~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 268 IFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhH
Confidence 45667788889999999999999999888877766655544433 333333333334444444556788999999873
Q ss_pred ------chhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 375 ------SVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 375 ------~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
+..+.-.|+.++..+++..+++.+.+.+++
T Consensus 348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 344666788888888988888887776654
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.5e-11 Score=119.88 Aligned_cols=293 Identities=10% Similarity=0.006 Sum_probs=154.0
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhh----hhCCcch-----------------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRSGH----------------------------- 92 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~D----r~GRr~~----------------------------- 92 (447)
+....+.+..++++.+.|.+..+.-+--.+..++.|.++| |+|||.+
T Consensus 28 ~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~ 107 (473)
T PRK10429 28 YLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYV 107 (473)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHH
Confidence 3444455667999999999999999999999999999999 6799700
Q ss_pred -h-----------------hhhhhhccc-CCCCchhHHHHHHHHHhhhhHHHHHHHHH----Hc---CCCCchHHHHhhh
Q 013219 93 -V-----------------FLSWFLEFV-PPSNRGMWMVIFSSFWTIGSVSEAIGAWI----IM---PRLDWRWLLGLSS 146 (447)
Q Consensus 93 -~-----------------~~~~~~E~~-p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~----~~---~~~~WR~~~~~~~ 146 (447)
. ..++..|.+ .+++|.++.++-..+.++|.++.+.+... .. +..+|+....+.+
T Consensus 108 ~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~ 187 (473)
T PRK10429 108 FVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLI 187 (473)
T ss_pred HHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 0 011235888 58889998888777777775544333221 11 1235777666655
Q ss_pred HHHHHHH-HHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCc
Q 013219 147 IPSFILL-AFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTT 225 (447)
Q Consensus 147 i~~~i~~-~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (447)
+..++.. +..+..+|.|+- ++ .+.+ ++
T Consensus 188 ~~~~~~~~~~~~~~~e~~~~-------~~--------------------------~~~~-------------------~~ 215 (473)
T PRK10429 188 AFFIVSTIITLRNVHEVYSS-------DN--------------------------QVSA-------------------EG 215 (473)
T ss_pred HHHHHHHHHHHcCceecCCc-------cc--------------------------cccc-------------------cc
Confidence 5544433 333344553210 00 0000 00
Q ss_pred CCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhh
Q 013219 226 EGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIP 305 (447)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~ 305 (447)
++......++.+++++..+..+.... ...+..+....+...... ...+..... .....+..+..++
T Consensus 216 ~~~~~~~~~~~~~~n~~~~~ll~~~~---~~~~~~~~~~~~~~y~~~----------y~~~~~~~~-~~~~~~~~i~~ii 281 (473)
T PRK10429 216 SHLTLKDIVALIYKNDQLSCLLGMAL---AYNIASNIINGFAIYYFT----------YVIGDADLF-PYYLSYAGAANLV 281 (473)
T ss_pred cCCCHHHHHHHHhcCHHHHHHHHHHH---HHHHHHHHHhhheeeEEE----------EECCCHHHH-HHHHHHHHHHHHH
Confidence 00011123444555544333222211 111111111111111100 000111111 1112233466788
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH---h-hhh-hHHHHHHHHHHHHHhhhhhhhHhhcccc-----CCcc
Q 013219 306 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---Y-QSN-ILTTGLLFGARMCVMGAFTVSLIYAAEI-----YPTS 375 (447)
Q Consensus 306 g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~El-----fP~~ 375 (447)
+.++.+++.||+|||+.+.++..+..+..+.+.. . ... ....+..+...+.....+...+.+.+|+ +++.
T Consensus 282 ~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG 361 (473)
T PRK10429 282 TLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLG 361 (473)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcC
Confidence 8889999999999999987666543333222211 1 111 1111111222222333445678888998 4455
Q ss_pred hhhhH--hhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 376 VRSTG--AGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 376 ~R~~~--~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
.|..| .|+...+.+++..+++.+.+.+++
T Consensus 362 ~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 362 IRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544 467788888999999888877664
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-09 Score=102.97 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=98.0
Q ss_pred ChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhc
Q 013219 289 DANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYA 368 (447)
Q Consensus 289 ~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (447)
..+.....+..++.+++|+++.+++.||+|-|+++.++.++..+..+...+........++-.....+..+..+..-.|.
T Consensus 287 ~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~ 366 (438)
T COG2270 287 STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYL 366 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34556666777889999999999999999999888777765444433323222221111111122223345556788999
Q ss_pred cccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 369 AEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMT-AVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 369 ~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
+++.|.+.-++-+|+.+..+|..++++|+.+..+.+..+..- .+.....+.+++. ..+...|+.+.++.
T Consensus 367 ~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl-~~L~~v~~~~~~~~ 436 (438)
T COG2270 367 ARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL-LLLLRVKVPGRREA 436 (438)
T ss_pred HHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH-hhEEeecCCCCccc
Confidence 999999999999999999999999999999987666554322 2333444444444 44455555544433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-09 Score=101.78 Aligned_cols=310 Identities=18% Similarity=0.173 Sum_probs=188.7
Q ss_pred HHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------------------------------
Q 013219 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------------------- 90 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------------------- 90 (447)
...+...+++++++|+|.+..|+++++..+...+.+++..+++.|+|-+
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~~~~~L~~gt~l 108 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLGGLPLLFLGTLL 108 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 4556678889999999999999999999999999999999999999987
Q ss_pred --------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC-CchHHHHhhhHHHHHHHHHhhcccC
Q 013219 91 --------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL-DWRWLLGLSSIPSFILLAFLGFQPE 161 (447)
Q Consensus 91 --------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~-~WR~~~~~~~i~~~i~~~~~~~lpE 161 (447)
..+.+..+=|.+|+|. |.+++.+.....+|..+++.++-.+..+. +||....+=++|+++.++. |+|.
T Consensus 109 ~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~--WlPq 185 (395)
T COG2807 109 AGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI--WLPQ 185 (395)
T ss_pred HHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH--Hhhh
Confidence 1223344458888775 78888888888888888776665554444 7999999888888876554 3343
Q ss_pred ChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchh
Q 013219 162 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSK 241 (447)
Q Consensus 162 SP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (447)
..|. + +.+ . +.+.+ +-..+++++
T Consensus 186 ~~r~-----~--------------~~~----------------~------------------~~~~~----~~~~vw~~~ 208 (395)
T COG2807 186 ALRE-----Q--------------AAS----------------I------------------ATKLV----SVRKVWRSP 208 (395)
T ss_pred cccc-----c--------------ccc----------------c------------------ccccc----cccccccCc
Confidence 3221 0 000 0 00000 001144443
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhC-hh
Q 013219 242 LARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG-RK 320 (447)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~G-Rr 320 (447)
. .+.+...+..+++.||.+.-|.|.+..... .+.........+..+.+++..+..-.+.+|.. +|
T Consensus 209 ~---aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G-----------~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r 274 (395)
T COG2807 209 L---AWQVTLFMGLQSLLYYIVIGWLPAILIDRG-----------LSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQR 274 (395)
T ss_pred h---hHHHHHHHHhhHHHHHHHHHHHHHHHHHcC-----------CCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2 222223344588999999999997653211 11122223344567888999999999999864 55
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCC-cchhhhHhhHHHHHHhHhHhHHHHH
Q 013219 321 LSITIMFTLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP-TSVRSTGAGAANAMGRIGGMVCPLV 398 (447)
Q Consensus 321 ~~l~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP-~~~R~~~~g~~~~~~~i~~~~~~~~ 398 (447)
........++.+-.+.+.+. .+..+..++++ .+...+.++..-.....-.+ .+.-+.=.|++..+|++.+..+|.+
T Consensus 275 ~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~ll--G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 275 PLVVLALLLMLVGLVGLLLAPGQLPILWALLL--GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH--hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 54444333333332222222 11111112221 11222334443333333333 3555566678999999999999999
Q ss_pred HHHHHhhchhhH-HHHHHHHHHHHHHHHHH
Q 013219 399 AVALVANCHQMT-AVVLLVVVIVTSILSVM 427 (447)
Q Consensus 399 ~~~l~~~~~~~~-~~~~~~~~~~i~~i~~~ 427 (447)
++++.|..+... ....++.+.++..++-+
T Consensus 353 ~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 353 FGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 999888765443 33345555444444433
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-09 Score=107.67 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=71.7
Q ss_pred ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh----hCCcch---------------------------h------
Q 013219 51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRSGH---------------------------V------ 93 (447)
Q Consensus 51 ~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr----~GRr~~---------------------------~------ 93 (447)
+.+..++++...|.+..+.-+--.+.-++.|.++|| +|||.| .
T Consensus 36 yt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~ 115 (460)
T PRK11462 36 YTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAIT 115 (460)
T ss_pred HHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Confidence 335568888888888888777778899999999995 799800 0
Q ss_pred --------------hhhhhhcccC-CCCchhHHHHHHHHHhhhhHHHHHHHHHH----cC---CCCchHHHHhhhHHHHH
Q 013219 94 --------------FLSWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWII----MP---RLDWRWLLGLSSIPSFI 151 (447)
Q Consensus 94 --------------~~~~~~E~~p-~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~----~~---~~~WR~~~~~~~i~~~i 151 (447)
..++..|.++ +++|..+.++-..+.++|.++++.+...+ .. ..+|+....+.++++++
T Consensus 116 ~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i 195 (460)
T PRK11462 116 YTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFM 195 (460)
T ss_pred HHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence 0012348888 88899999999998888876665443221 11 24688877766666555
Q ss_pred HH
Q 013219 152 LL 153 (447)
Q Consensus 152 ~~ 153 (447)
..
T Consensus 196 ~~ 197 (460)
T PRK11462 196 ML 197 (460)
T ss_pred HH
Confidence 44
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=107.57 Aligned_cols=105 Identities=12% Similarity=0.006 Sum_probs=66.9
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh-hh-hHHHHHHHHHHHHHhhhhhhhHhhccccCCc----
Q 013219 301 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPT---- 374 (447)
Q Consensus 301 ~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~---- 374 (447)
+..+++..+.+++.||+|+|+.+.++..++.+..+.+.... .. +......+...+......+..+...+|.-|.
T Consensus 275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~ 354 (448)
T PRK09848 275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYL 354 (448)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 44566788899999999999988877765554443333322 11 1111112222222333345567777777764
Q ss_pred ---chhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 375 ---SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 375 ---~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
+.++...|+.+....++..+++.+.+.+++.
T Consensus 355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888999999999999998887766543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-08 Score=100.18 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=83.7
Q ss_pred ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-CCc---------------------------------------
Q 013219 51 VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRS--------------------------------------- 90 (447)
Q Consensus 51 ~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-GRr--------------------------------------- 90 (447)
+.+++|+++.+.+.+.+.+..+..++.+++|+++||+ |||
T Consensus 36 L~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G 115 (493)
T PRK15462 36 LTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYG 115 (493)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc
Confidence 3566899999999999999999999999999999999 999
Q ss_pred --chhhhhhhhcccCCC--CchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH
Q 013219 91 --GHVFLSWFLEFVPPS--NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL 152 (447)
Q Consensus 91 --~~~~~~~~~E~~p~~--~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~ 152 (447)
.+...+++.|..|++ +|+...++.....++|..+++.+...+..+.+||..|.++++..++.
T Consensus 116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~ 181 (493)
T PRK15462 116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAG 181 (493)
T ss_pred cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHH
Confidence 011123456999986 78889999999999999999988877777789999999877644433
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.1e-10 Score=93.04 Aligned_cols=133 Identities=17% Similarity=0.167 Sum_probs=94.3
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhH
Q 013219 301 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 380 (447)
Q Consensus 301 ~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~ 380 (447)
+..+++..+.+++.||+|||+.+..+.....+..+......+........+...++.....+..+.+..|.+|++.|+++
T Consensus 9 ~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (141)
T TIGR00880 9 LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVA 88 (141)
T ss_pred hHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHH
Confidence 44556778899999999999998877666555544443333222222222222233333445678899999999999999
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 381 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 381 ~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.++.+....++..++|.+.+.+.+..+....+.+.+.+.+++.+..+++.|||
T Consensus 89 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 89 LGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999888777655554567777777777777777777775
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-09 Score=98.43 Aligned_cols=114 Identities=13% Similarity=0.145 Sum_probs=74.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
........+|.+++++++||+|+|+.+.++..++.+..+......... ....++...++....++.......|.+|.+
T Consensus 185 s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~- 262 (310)
T TIGR01272 185 AYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH- 262 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Confidence 334556678999999999999999888776666555443333222221 122222333445556677778888888875
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHH
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVV 413 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 413 (447)
.+++.++. .++.+|+.+.|.+.+.+.+..+...+++
T Consensus 263 ~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 263 TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 34566664 6778999999999988777655444444
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.5e-09 Score=107.74 Aligned_cols=183 Identities=14% Similarity=0.173 Sum_probs=107.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhh
Q 013219 238 FSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA 317 (447)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~ 317 (447)
+++++++.....+..++...+..+....+.+.+... .+.+..+.........+...++.++.|+++||+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~ 98 (476)
T PLN00028 30 FARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDN-----------LNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY 98 (476)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555666666666665555555554444444321 111112222223334556778889999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHH
Q 013219 318 GRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 397 (447)
Q Consensus 318 GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~ 397 (447)
|||+.+..+.+..++..+......+.....+..+...++. +.......+.+|.+|.+.|++++|+.+..+.+++.+++.
T Consensus 99 G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~-~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~ 177 (476)
T PLN00028 99 GPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSL-ATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQL 177 (476)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHH
Confidence 9999888777666655544444333222112112222222 222334457889999999999999999888888877776
Q ss_pred HHHHHHh----h-----chhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 398 VAVALVA----N-----CHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 398 ~~~~l~~----~-----~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
+.+.+.. . .++...+++.+++.++..+..++++++
T Consensus 178 ~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 178 LMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6654322 1 234456777777776666666665433
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-09 Score=103.35 Aligned_cols=357 Identities=15% Similarity=0.134 Sum_probs=208.8
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch-----
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH----- 92 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~----- 92 (447)
+--+.+|.+++.+++-.+.+++.-...+.+.-.....|+ +.+..-|.+-++++-+..=.+++-|+.|++|=|..
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt 116 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGT 116 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHH
Confidence 345667888877777777777766555555555666677 66677788888988888888999999999999900
Q ss_pred -------------------------h-----------------hhh-hhhcccCCCCchhHHHHHHHHHhhhhHHHHHHH
Q 013219 93 -------------------------V-----------------FLS-WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGA 129 (447)
Q Consensus 93 -------------------------~-----------------~~~-~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~ 129 (447)
+ .++ ...-|+|+++|..+.+.-..+..+|..++.++.
T Consensus 117 ~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llp 196 (480)
T KOG2563|consen 117 VLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLP 196 (480)
T ss_pred HHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcc
Confidence 0 001 124799999999999888888888888777766
Q ss_pred HHHcCC------CCchHH--HH-hhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccc
Q 013219 130 WIIMPR------LDWRWL--LG-LSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRS 200 (447)
Q Consensus 130 ~~~~~~------~~WR~~--~~-~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 200 (447)
-.+.++ ..|-.- ++ +.++-.+.+.+..+.-+|.|+.= ++.+.
T Consensus 197 pilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tP-----ps~s~------------------------ 247 (480)
T KOG2563|consen 197 PILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTP-----PSASQ------------------------ 247 (480)
T ss_pred ceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC-----CchhH------------------------
Confidence 555432 347763 44 23333333333333333433210 00000
Q ss_pred cCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q 013219 201 TLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSP 280 (447)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~ 280 (447)
. . . ++..-.+.++.+++++ +.++....+..+...+|+......... |.+
T Consensus 248 ---------------~-----~-~-~~~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l~~~l-----~~s- 296 (480)
T KOG2563|consen 248 ---------------A-----A-L-QDASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLLNLAL-----CPS- 296 (480)
T ss_pred ---------------h-----h-h-hcCcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHhhhcc-----ccc-
Confidence 0 0 0 0001123556666553 344444445555666666544443111 111
Q ss_pred CcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHH-HHHHHHhh---hhhHHHHHHHHHHH
Q 013219 281 LMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLF-LLPLVTYQ---SNILTTGLLFGARM 355 (447)
Q Consensus 281 ~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GR-r~~l~~~~~~~~~~-~~~l~~~~---~~~~~~~~~~~~~~ 355 (447)
.++. ........+..+.+.+|+++.+.+.||.+. |...++......+. +.+..... ..+..........+
T Consensus 297 ---gY~~--~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~ 371 (480)
T KOG2563|consen 297 ---GYEG--VFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGF 371 (480)
T ss_pred ---cCCc--cccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHH
Confidence 1111 111223344566778899999999999864 44444444433333 22222211 11111111222223
Q ss_pred HHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch----hhHHHHHHHHHHHHHHHHHHhccc
Q 013219 356 CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH----QMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 356 ~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
+..+-.++-.-+..|.-=+..-++..|+.+..+.+.+++-.++.....+..+ ....-+.....+++..+.+.++.|
T Consensus 372 ~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 372 FGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred hhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 3344455667788888777778899999999999999988888776666554 222345556666777777888877
Q ss_pred cccCCCccc
Q 013219 432 ETKGQELSD 440 (447)
Q Consensus 432 Etkg~~l~e 440 (447)
+-|.+..|+
T Consensus 452 ~y~R~~~e~ 460 (480)
T KOG2563|consen 452 DYRRLRAEA 460 (480)
T ss_pred hHHhHhhhh
Confidence 766655554
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=3e-09 Score=104.82 Aligned_cols=142 Identities=18% Similarity=0.080 Sum_probs=98.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.+++.||+|||+.+..+.....+..+......+.....+..+...++.....+....+..|.+|.+
T Consensus 46 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 125 (385)
T TIGR00710 46 LTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE 125 (385)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH
Confidence 34445667888899999999999999988877766655544444333222222222222222223345678899999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
.|+++.++.+....++..++|.+.+++.+..++...+++.+.+.+++.+...+..||++.++
T Consensus 126 ~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (385)
T TIGR00710 126 ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE 187 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 99999999999999999999988887766655555666667666666666666677875543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-09 Score=103.46 Aligned_cols=138 Identities=10% Similarity=-0.062 Sum_probs=93.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...++.++.+++.||+|||+.+..+.++..+..+......+.....+.-+...++..+..+....+.+|.+|.+.
T Consensus 50 s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (412)
T TIGR02332 50 TLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF 129 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH
Confidence 33455667788899999999999999887777665555444443332221221122222222334555678899999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHh------hchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVA------NCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|+++.++.+....++..+++.+.+++.+ ..++...+++.++..++..++.+++.||++
T Consensus 130 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 130 RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 9999999999988999999988876653 234556677767666665566666677875
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.5e-09 Score=103.98 Aligned_cols=139 Identities=18% Similarity=0.105 Sum_probs=91.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.....+...++.++.+++.||+|||+.+..+.....+..+......+.....+..+...+......+....+.+|.+|.+
T Consensus 56 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 135 (406)
T PRK11551 56 FSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPR 135 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHH
Confidence 34456677888999999999999999988877655554443333333222222222222222233455678899999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.|+++.++.+....+++.+++.+...+.+..++...+++.+++.++..+....+.||+.
T Consensus 136 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 136 LRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 99999999999888999999887765555444445566666555555555555567764
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-09 Score=104.12 Aligned_cols=139 Identities=18% Similarity=0.058 Sum_probs=93.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...++.++.|.++||+|||+.+..+.....+..+......+........+..........+..+.+..|.+|.+.
T Consensus 55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~ 134 (406)
T PRK15402 55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD 134 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH
Confidence 34456677888999999999999999888776655554444433322211111111111122223456778899999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
|.++.++......++..++|.+...+.+..++...+++.+++.+++.+..++..||++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (406)
T PRK15402 135 AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999988888888888889888776665555566777777777776666666788764
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.3e-09 Score=108.53 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=90.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..++.++|.++.|+++||+|||+.++++.++.++..++..+..+.....+.-++..++..+..++...+.+|.+|.+
T Consensus 208 ~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~ 287 (742)
T TIGR01299 208 GLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQE 287 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Confidence 34456778899999999999999999998877665555544443333222222223333344445567899999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc-------------hhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANC-------------HQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-------------~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|++..++.+.+..+++++++.+...+.... ++...+++.++.+++ .++..++.||+
T Consensus 288 ~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll-~ll~~~~lPES 357 (742)
T TIGR01299 288 KRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVF-AIGALTFMPES 357 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHH-HHHHHHHcCCC
Confidence 9999999999988888888886654443221 122333333333344 34555667887
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.2e-09 Score=102.87 Aligned_cols=137 Identities=14% Similarity=0.014 Sum_probs=91.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+..+++.++.|+++||+|||+.+..+.....+..+.+.+.++........+..........+....+.+|.+|.+.
T Consensus 50 s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 129 (395)
T PRK10054 50 TIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS 129 (395)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH
Confidence 34456677888999999999999998887776655554444443332222211111111112223456788899999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|+++.|+.+....++..++|.+.+.+.. .+....+...+++.+++.+...+..||++
T Consensus 130 ~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 130 KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999998887654 34445666666666666555555455543
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.7e-09 Score=105.28 Aligned_cols=138 Identities=20% Similarity=0.078 Sum_probs=94.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+..+++.++.++++||+|||+.+..+..+..+..+......+.....+..+...++.....+....+.+|.+|.+.
T Consensus 59 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 138 (398)
T TIGR00895 59 SAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF 138 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh
Confidence 34456678889999999999999999888777666554444433322221222222222222334567889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|+++.++.+....+++.++|.+.+++.+..+....+.+.+.+.++..+....+.||+.
T Consensus 139 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 139 RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI 196 (398)
T ss_pred hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999998887776655544555555555555555556667763
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-08 Score=97.67 Aligned_cols=286 Identities=19% Similarity=0.151 Sum_probs=160.8
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh----hCCcch--------h----------------------hh---
Q 013219 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN----YGRSGH--------V----------------------FL--- 95 (447)
Q Consensus 53 ~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr----~GRr~~--------~----------------------~~--- 95 (447)
+..|+++...|.+..+.=+==++.-.+.|.+.|| +||+.| . ..
T Consensus 41 dv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~ 120 (467)
T COG2211 41 DVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYM 120 (467)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHH
Confidence 5568888888777777666677888999999994 677600 0 00
Q ss_pred --------------hhhhcccC-CCCchhHHHHHHHHHhhhhHHHHHHHHHH----c-C--CCCchHHHHhhhHHHHHHH
Q 013219 96 --------------SWFLEFVP-PSNRGMWMVIFSSFWTIGSVSEAIGAWII----M-P--RLDWRWLLGLSSIPSFILL 153 (447)
Q Consensus 96 --------------~~~~E~~p-~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~----~-~--~~~WR~~~~~~~i~~~i~~ 153 (447)
++..|+.+ +++|..+.+.-+.+..+|.++...+...+ . . ..|||..-++-++.+++..
T Consensus 121 l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~ 200 (467)
T COG2211 121 LLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILL 200 (467)
T ss_pred HHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHH
Confidence 11236665 57899999999999999977665443222 2 2 4589888777777666655
Q ss_pred HHhh-cccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhH
Q 013219 154 AFLG-FQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLS 232 (447)
Q Consensus 154 ~~~~-~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (447)
+..+ ...|-+. ++. + .+...+.+...
T Consensus 201 l~~~~~v~ER~~---------~~~--------------~------------------------------~~~~~~~~~~~ 227 (467)
T COG2211 201 LFCFFNVKERVV---------ETQ--------------P------------------------------TKTGVKLKLKD 227 (467)
T ss_pred HHHHHHhhcccC---------ccc--------------c------------------------------CcccccccHHH
Confidence 4433 2222111 000 0 00000011112
Q ss_pred HHHhhcchhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHH
Q 013219 233 LFLMLFSSKLARTTILLWLLLF-GNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAA 311 (447)
Q Consensus 233 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~ 311 (447)
++..+++++..+..++..+..+ +.++. -+...+... ...+..+...+..........+++.++..
T Consensus 228 ~~~~~~~Nrp~~~~l~~~l~~~~~~~i~-~s~~~yy~~-------------y~lg~~~l~~~~~~~~~~~~~l~~~~~~p 293 (467)
T COG2211 228 SFLLIFKNRPLLLLLLMNLLLFIAFNIR-GSIMVYYVT-------------YVLGDPELFAYLLLLASGAGLLIGLILWP 293 (467)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHH-hhhhheeEE-------------EEcCChHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3444666655444443322222 11111 111111000 01122222223333444555566688899
Q ss_pred HHHhhhChhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhHhhccccC-----CcchhhhHh--h
Q 013219 312 ILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIY-----PTSVRSTGA--G 382 (447)
Q Consensus 312 ~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-----P~~~R~~~~--g 382 (447)
.+.+|+|+|+.+.++.++..+..+.+.+... ..+..+..+++........+++|+..+|+- -|..|..|. +
T Consensus 294 ~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s 373 (467)
T COG2211 294 RLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYS 373 (467)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHH
Confidence 9999999999999887766665555554332 222233333444444555678899998874 355666555 5
Q ss_pred HHHHHHhHhHhHHHHHHHHHHhh
Q 013219 383 AANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 383 ~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
...++..++..++..+.++++..
T Consensus 374 ~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 374 GMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888777776653
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.1e-09 Score=102.31 Aligned_cols=140 Identities=14% Similarity=0.082 Sum_probs=95.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+...++.++.|+++||+|||+.+..+.....+.........+.....+..+....+.....+..+.+.+|.+|.+.
T Consensus 45 ~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~ 124 (392)
T PRK10473 45 SVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR 124 (392)
T ss_pred HHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH
Confidence 34455667788999999999999999888776655554444433222211111112222222234467789999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCC
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~ 436 (447)
|+++.++.+....++..++|.+...+.+..++...+.+.+.+.+++.++.....||++.+
T Consensus 125 r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 184 (392)
T PRK10473 125 RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA 184 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999888998877665555555566677766666666666666787544
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.7e-09 Score=102.88 Aligned_cols=138 Identities=14% Similarity=0.060 Sum_probs=94.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
+..++..++.++.|+++||+|||+.++.+..+.++..+......+.....+.-+..........+..+.+..|.+|.+.|
T Consensus 59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~ 138 (413)
T PRK15403 59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKG 138 (413)
T ss_pred HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 34556677888999999999999998877666555444433333322212211111111112223457889999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
++++++.+....++..++|.+.+.+.+..++...|++.+++.+++.+...+..||++.
T Consensus 139 ~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 139 IKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999888777665566667777777777776665666788864
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.7e-08 Score=100.18 Aligned_cols=138 Identities=12% Similarity=0.032 Sum_probs=95.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
...+...++.++.+.+.||+|||+.+..+.....+..+......+.+...+.-+...++.....+....+.+|.+|.+.|
T Consensus 63 ~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~ 142 (394)
T PRK10213 63 VTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTV 142 (394)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHH
Confidence 34566677888999999999999999888777666554444333222222222222222223345667788999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+++.++......++..++|.+.+.+.+..++...+++.+.+++++.+......||+++
T Consensus 143 ~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~ 200 (394)
T PRK10213 143 PKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG 200 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence 9999999999999999999998887776666666666666666655555555677643
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-08 Score=104.38 Aligned_cols=184 Identities=16% Similarity=0.111 Sum_probs=108.9
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhC
Q 013219 239 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 318 (447)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~G 318 (447)
++++++....++..++.+.+.++......+.+.+. .+.+............+...++.++.++++||+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 83 (496)
T PRK03893 15 NRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGE-----------FGLTTVQAASLISAAFISRWFGGLLLGAMGDRYG 83 (496)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444455555555555555544444544321 1112222222333446677888999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHH
Q 013219 319 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLV 398 (447)
Q Consensus 319 Rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~ 398 (447)
||+.+..+..+..+..+......+.....+..+...++..+..+....+..|.+|.+.|+++.++.+....+++.++|.+
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 163 (496)
T PRK03893 84 RRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQV 163 (496)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998887766655554444433322222222222222333445667889999999999999999999999999999998
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 399 AVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 399 ~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.+.+.+..++...+++ +.+.++..++.....||++
T Consensus 164 ~~~l~~~~~w~~~f~~-~~~~~~~~~~~~~~~p~~~ 198 (496)
T PRK03893 164 YSLVVPVWGWRALFFI-GILPIIFALWLRKNLPEAE 198 (496)
T ss_pred HHHHhccCCHHHHHHH-HHHHHHHHHHHHHhCCCch
Confidence 8877665555444443 2222222233333446653
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-08 Score=97.96 Aligned_cols=138 Identities=19% Similarity=0.064 Sum_probs=95.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.|+++||+|||+.+..+..+.++..+...+..+.....+..+...++.....+....+.+|.+|.+
T Consensus 38 ~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~ 117 (352)
T PF07690_consen 38 FSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE 117 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhh
Confidence 34456677889999999999999999888887776666333333222222222222333333344566788999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|+++.++.+....++..++|.+.+.+.+..++...+++.+.+.+++.++...+.++.
T Consensus 118 ~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~ 175 (352)
T PF07690_consen 118 ERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEP 175 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred hhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhc
Confidence 9999999999999999999999988776555555567777777777766544444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-08 Score=102.66 Aligned_cols=136 Identities=13% Similarity=-0.004 Sum_probs=91.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 378 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~ 378 (447)
..+...++.++.++++||+|||+.+..+....++..+......+.....+..+...++.....+....+..|.+|.+.|+
T Consensus 54 ~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~ 133 (471)
T PRK10504 54 YVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYM 133 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHH
Confidence 34566778899999999999999888766555544433333222221122122222222223455677889999999999
Q ss_pred hHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 379 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 379 ~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
++.|+.+....++..++|.+.+.+.+..++.+.+.+....+.++.+......|+.+
T Consensus 134 ~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~ 189 (471)
T PRK10504 134 AAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT 189 (471)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999887777666555666666556666666665555543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=102.89 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHH
Q 013219 248 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTA-GRKLSITIM 326 (447)
Q Consensus 248 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~-GRr~~l~~~ 326 (447)
.++..-....+.+|++..+.+...... .+.+................++.+++|+++||+ |||+.+..+
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~----------lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQ----------LKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 333344445667777766655332110 111222222223344556677889999999999 999998887
Q ss_pred HHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhh-hhhHhhccccCCcc--hhhhHhhHHHHHHhHhHhHHHHHHHHH
Q 013219 327 FTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAF-TVSLIYAAEIYPTS--VRSTGAGAANAMGRIGGMVCPLVAVAL 402 (447)
Q Consensus 327 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ElfP~~--~R~~~~g~~~~~~~i~~~~~~~~~~~l 402 (447)
.+...+..+.+..... .......+..... ..+.+ +....+.+|+||++ .|+++.++.+..++++++++|.+.+++
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~i-G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L 161 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVC-GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHH
Confidence 7765555443332211 1111111111111 12222 34567899999986 799999999999999999999999988
Q ss_pred HhhchhhHHHHHHHHHHHHHH
Q 013219 403 VANCHQMTAVVLLVVVIVTSI 423 (447)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~i~~ 423 (447)
.+..+....|...++..+++.
T Consensus 162 ~~~~Gw~~~F~iaaigm~l~l 182 (493)
T PRK15462 162 QEEYSWAMGFGLAAVGMIAGL 182 (493)
T ss_pred HhhhChHHHHHHHHHHHHHHH
Confidence 776665555555444334433
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-08 Score=98.56 Aligned_cols=130 Identities=16% Similarity=0.166 Sum_probs=85.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...++.++.+++.||+|||+.+..+..+..+..+......+.....+..+...++.....+....+.+|.+|.+.
T Consensus 49 s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~ 128 (394)
T PRK03699 49 TFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ 128 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccch
Confidence 34456777888999999999999999888776665555444443332222222222222222233456678899999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHH
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSV 426 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~i~~ 426 (447)
|+++.+..+....+++.++|.+.+++... .++...+...+.+.++..+..
T Consensus 129 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~ 179 (394)
T PRK03699 129 RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT 179 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888889887766543 344555666665555544433
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.5e-08 Score=100.36 Aligned_cols=137 Identities=12% Similarity=0.036 Sum_probs=93.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+...++.++.+++.||+|||+.+.++..+.++..+......+.....+..+...++....++....+.+|.+|.+.
T Consensus 65 ~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~ 144 (434)
T PRK11663 65 TLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE 144 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence 34566778889999999999999999888887766665544443332211111112222222234556788899999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
|+++.++.+....+++.++|.+.+.+.+..++...+++.++++++..+...+..||+
T Consensus 145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 145 RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999998888777666665666666665554444444444554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-09 Score=104.84 Aligned_cols=140 Identities=14% Similarity=0.012 Sum_probs=98.1
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...++.++.+++.||+|||+.+..+..+..+..+......+.....+..+...++.....+....+..|.+|.+.
T Consensus 44 ~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~ 123 (485)
T TIGR00711 44 TSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK 123 (485)
T ss_pred HHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH
Confidence 44567778889999999999999999888777666555444433332221222222222223334567889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCC
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~ 436 (447)
|+++.++......++..++|.+.+++.+..++.+.+++.+.+.+++.++..++.||.+.+
T Consensus 124 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 183 (485)
T TIGR00711 124 RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA 183 (485)
T ss_pred HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999888777766655666666666666666666666775443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=7e-09 Score=101.96 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=97.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.++++||+|||+.+..+....++.........+.....+..+...++.....+....+.+|.+|.+
T Consensus 35 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 114 (399)
T TIGR00893 35 FSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVASWFPAS 114 (399)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHH
Confidence 34456677888899999999999999988877765555544444333222222222222233333456678999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
.|+++.++.+....++..++|.+.+.+.+..++...+.+.+++.++..+...+..||++.
T Consensus 115 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 115 ERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence 999999999999999999999888877666665566666666666666666666666543
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-08 Score=100.54 Aligned_cols=137 Identities=17% Similarity=0.106 Sum_probs=89.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+...++.++.++++||+|||+.+..+....++..+......+.....+.-+...++..+.++....+.+|.+|.+.
T Consensus 60 ~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~ 139 (426)
T PRK12307 60 TAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL 139 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence 44566778889999999999999999988877766655544443332222222222222233344566788999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|+++.++......++.++++.+.+.+.+..++...+++.+ +.++...+.....||++
T Consensus 140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~-~~~~~~~~~~~~~p~~~ 196 (426)
T PRK12307 140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGL-LPVLLVIYIRARAPESK 196 (426)
T ss_pred hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHH-HHHHHHHHHHHHCCCCh
Confidence 9999999998888999999888777666555444454432 22222222233346653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.7e-08 Score=98.55 Aligned_cols=138 Identities=17% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.|+++||+|||+.+..+..+..+..+......+.....+..+....+.....+....+..|.+|.+
T Consensus 53 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~ 132 (405)
T TIGR00891 53 ISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKH 132 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChh
Confidence 34456677888999999999999999988776665555444443333222122222222222333455678889999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.|+++.++.+....++..+++.+...+.+..+ +...+++.+...+++ ++.....||++
T Consensus 133 ~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~ 192 (405)
T TIGR00891 133 LRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAE 192 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 99999999999999999999988876655443 333444433333333 34444557764
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.5e-08 Score=94.75 Aligned_cols=138 Identities=13% Similarity=-0.031 Sum_probs=90.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
..+..+...++.++.|+++||+|||+.+..+.....+..+...... +.....+..+...++.....+....+.+|
T Consensus 40 ~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 119 (365)
T TIGR00900 40 ALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD 119 (365)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444567778889999999999999998877665554443333222 22222222222222223334556789999
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc-cccc
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI-PFET 433 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~-~pEt 433 (447)
.+|.+.|+++.++.+....++..++|.+.+.+.+..++...+++.+...+++.+....+ .||.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (365)
T TIGR00900 120 LVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPEL 183 (365)
T ss_pred cCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 99999999999999999999999999888877666555555655555555554444433 3443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5e-08 Score=96.65 Aligned_cols=135 Identities=7% Similarity=-0.057 Sum_probs=92.0
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 378 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~ 378 (447)
..+...++.+..+.+.||+|||+.+..+....++..+......+.+...+.-+.........++....+.+|.+|.+.|+
T Consensus 53 ~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~ 132 (390)
T PRK03545 53 YAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKA 132 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Confidence 34455667788899999999999998887766655544444333222222212222222222345567889999999999
Q ss_pred hHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 379 TGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 379 ~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
++.|+......++..++|.+...+.+..++...+++.+.++++..+......||.
T Consensus 133 ~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 133 QALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999998887766655666677777777666665555555664
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-08 Score=96.56 Aligned_cols=105 Identities=17% Similarity=0.060 Sum_probs=87.0
Q ss_pred ccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc----------------------------------------hhh
Q 013219 55 WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------HVF 94 (447)
Q Consensus 55 ~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------~~~ 94 (447)
.+-.+++.|++.++..+-.++-+.+.|.+.||+|+|. +..
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg 180 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG 180 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence 3445677899999999999999999999999999991 112
Q ss_pred hhhhhcccCCCC-chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcc
Q 013219 95 LSWFLEFVPPSN-RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 159 (447)
Q Consensus 95 ~~~~~E~~p~~~-Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l 159 (447)
.+.++..+|.+. ||.++++...+..+|.+++++.+..+....|.+.+|++.+...++-..+.+++
T Consensus 181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 234567777765 79999999999999999999988877777899999999999888877766554
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.1e-08 Score=98.63 Aligned_cols=138 Identities=13% Similarity=0.019 Sum_probs=83.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh---hhh-HHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNI-LTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.....+...++.++.|+++||+|||+.++.+.++.++..+...... +.. ...+..+...++....++......+|.
T Consensus 69 ~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~ 148 (452)
T PRK11273 69 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 148 (452)
T ss_pred HHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 3445667788899999999999999998887776665554443321 111 111111222222222334445677899
Q ss_pred CCcchhhhHhhHHHHHHhHhHhH-HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMV-CPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+|.+.|+++.|+.+....+++.+ +|.....+....++...+++.+.+.++..+...++.||+
T Consensus 149 ~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 149 WSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred CChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999988888887644 444322222222344556666666566555555555665
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-08 Score=98.96 Aligned_cols=139 Identities=16% Similarity=0.049 Sum_probs=97.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..+...++.++.++++||+|||+.+..+..+..+.........+.....+..+...++.....+....+.+|.+|.+.
T Consensus 33 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~ 112 (377)
T PRK11102 33 SAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE 112 (377)
T ss_pred HHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34556677889999999999999999888777666655544433322222222222222222333456788999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
|+++.++.+....+++.++|.+.+.+.+..++...+++.+.+.++..+...+..||++.
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (377)
T PRK11102 113 FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLP 171 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 99999999999999999999888777665555566667777766666666666677643
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1e-07 Score=97.48 Aligned_cols=138 Identities=17% Similarity=0.048 Sum_probs=92.4
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccC-Ccchh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY-PTSVR 377 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf-P~~~R 377 (447)
..+....+.++.|+++||+|||+.+..+..+..+..+......+.....+.-+...++..+..+.......+.+ |.+.|
T Consensus 50 ~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r 129 (495)
T PRK14995 50 YSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQR 129 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 34555667788999999999999998887766655544444333222121111122222222233344455555 78999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCC
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~ 436 (447)
+++.|+......++..++|.+.+.+.+..++.+.|++...+++++.++..+..||.+++
T Consensus 130 ~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~ 188 (495)
T PRK14995 130 NMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR 188 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 99999999999999999999998887776666777776666677666666767775443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.7e-08 Score=98.43 Aligned_cols=138 Identities=17% Similarity=0.075 Sum_probs=88.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh---hhhH-HHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNIL-TTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
..+..+...++.++.++++||+|||+.+..+.+..++..+...... +... ..+..+...++....++......+|.
T Consensus 67 ~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~ 146 (438)
T TIGR00712 67 LSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHW 146 (438)
T ss_pred HHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHh
Confidence 3445667788899999999999999988777665555444333211 1111 11111122222222234456677899
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+|.+.|+++.|+.+....+++.++|.+....... .++...+++.++++++..+..+++.||+
T Consensus 147 ~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 147 WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999988888776544433 3444556666777666666666666665
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.1e-08 Score=95.22 Aligned_cols=140 Identities=14% Similarity=0.011 Sum_probs=89.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.....+...++.++.++++||+|||+.+..+.....+..+......+.....+..+...++.....+....+..|.+|.+
T Consensus 49 ~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 128 (394)
T PRK11652 49 MAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT 128 (394)
T ss_pred HHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH
Confidence 34456677788899999999999999888776655554443333322221111111111111122234566788999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
.|+++.++.+....++..++|.+.+.+.+..++...+++.+.+.++..+...++.||++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 129 QLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence 999999998888888888888888776665555556666665555554555555678643
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.2e-08 Score=99.91 Aligned_cols=138 Identities=13% Similarity=0.037 Sum_probs=91.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.++++||+|||+.+..+..+..+..+......+.....+..+...++.....+....+.+|.+|.+
T Consensus 36 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 115 (379)
T TIGR00881 36 LSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRS 115 (379)
T ss_pred HHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHh
Confidence 34456677888999999999999999988887766665544444333222222222222222233456778999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHH-HHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPL-VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|+++.++.+....+++.++|. +...+.+..++...+++.+.+.++..+...++.||+
T Consensus 116 ~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 116 ERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence 9999999999999999999984 444444444444556666666555555555555554
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-07 Score=97.34 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=73.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhh------hhHHHHHHHHHHHHHhhhhhhhHhhcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS------NILTTGLLFGARMCVMGAFTVSLIYAA 369 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (447)
.....++.+++.++.+++.||+|||+.+..+.++..+..+......+ .....+.-+...++..+..+....+.+
T Consensus 62 ~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~ 141 (502)
T TIGR00887 62 NGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITS 141 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34456778899999999999999999988776655554433333211 111122222233333344567789999
Q ss_pred ccCCcchhhhHhhHHHHHHhHhHhHHHHHHHH
Q 013219 370 EIYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 401 (447)
Q Consensus 370 ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~ 401 (447)
|.+|++.|+++.++.+....++..+++.+...
T Consensus 142 e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 142 EFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888877766543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.3e-07 Score=93.45 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=94.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...++.++.+++.||+|||+.+..+....++..+......+.+...+.-+...++.....+....+..|.+|.+.
T Consensus 45 s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 124 (382)
T PRK10091 45 SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH
Confidence 44567778899999999999999999988877766655544443333222222222222222223445667889999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|++++++......++..++|.+...+.+..++...+.+.+...++..+...+..||.+
T Consensus 125 ~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 125 VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999888888888888887776666556666677777666666555566677754
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=92.37 Aligned_cols=108 Identities=20% Similarity=0.245 Sum_probs=72.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
..+..+...++.++.++++||+|||+.+..+.+...+..+...... +.....+..+...+. .+.+.....+.+|.+|.
T Consensus 43 ~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~ 121 (366)
T TIGR00886 43 VAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWISFFFPK 121 (366)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-chhhHhHHHHHHHhcCH
Confidence 3445667788999999999999999998887776666555444433 222111111111111 23334456788999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
+.|+++.++......++..+++.+.+.+..
T Consensus 122 ~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 122 KIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred hhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999988888777777766655443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-07 Score=93.01 Aligned_cols=135 Identities=16% Similarity=0.054 Sum_probs=90.1
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
+..+...++..+.|+++||+|||+.+..+.....+..+......+.....+..+...++ .+..+....+..|.+|.+.|
T Consensus 62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~ 140 (408)
T PRK09874 62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLL-GGFVPNANALIATQVPRNKS 140 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hhhHHhHHHHHHHhcCHhhh
Confidence 34556677788899999999999998877665555544433322222111111111111 22334455677899999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+++.++.+....++.+++|.+.+.+.+..+....+++.+.+.+++.+...++.||.
T Consensus 141 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 141 GWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999998899999998888776655555667777776666666666666664
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-07 Score=95.19 Aligned_cols=168 Identities=15% Similarity=0.016 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhh-hChhHHHHHH
Q 013219 248 LLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDT-AGRKLSITIM 326 (447)
Q Consensus 248 ~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr-~GRr~~l~~~ 326 (447)
.++...+...+.||++.-+.+....... ..+.+............+...++.+++|+++|| +|||+.+..+
T Consensus 14 ~l~~~~~~~~~~~~~~~~~L~~yl~~~~--------~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~ 85 (475)
T TIGR00924 14 TLFFVELWERFSYYGMQGILAVYLVQQA--------GLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLG 85 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHH
Confidence 3444455567778876655553321100 011122222233344466778899999999999 8999999888
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc---hhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 327 FTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS---VRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 327 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~---~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
.++.++..+.+....+.............+.....+....+.+|.+|.+ .|+++.++.+...++++.++|.+.+++.
T Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~ 165 (475)
T TIGR00924 86 GIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIA 165 (475)
T ss_pred HHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHH
Confidence 8776666555444332221111111111111122345567889999875 4899999999999999999999998887
Q ss_pred hhchhhHHHHHHHHHHHHHH
Q 013219 404 ANCHQMTAVVLLVVVIVTSI 423 (447)
Q Consensus 404 ~~~~~~~~~~~~~~~~~i~~ 423 (447)
+..+....|...++..+++.
T Consensus 166 ~~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 166 ENYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred HhcChHHHHHHHHHHHHHHH
Confidence 76555555555554444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.1e-07 Score=90.47 Aligned_cols=133 Identities=8% Similarity=-0.082 Sum_probs=88.7
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhh
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 379 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~ 379 (447)
.+......++.|.++||+|||+.+..+.....+..+......+.+...+..+...+......+....+..|.+|.+.|++
T Consensus 56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (400)
T PRK11646 56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGR 135 (400)
T ss_pred HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 44555567889999999999999988877766665554443332222221112211111122445677899999999999
Q ss_pred HhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 380 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 380 ~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+.|+.+....++..++|.+.+++. ..+....+++.+...+++.++..+..||.
T Consensus 136 a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 136 FFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999888776 44555556665655555555545555664
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.9e-07 Score=91.67 Aligned_cols=136 Identities=10% Similarity=-0.056 Sum_probs=88.5
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
...+...++.+..|++.||+|||+.+..+...............+.....+.-+..... .+.........+|.+|.+.|
T Consensus 34 ~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g-~~~~~~~~~~~~~~~~~~~r 112 (368)
T TIGR00903 34 TYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALG-QPFLLNAFAPAASQIREERR 112 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhH-hHHHHHHHHHHHHHcCHHHH
Confidence 34556678889999999999999876654433322221111111111111111111111 22233345556899999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
++++++......+++.+++.+.+.+.+..++...+++.+++.++..+..++..||.+
T Consensus 113 ~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 113 DLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999988887777666666677777777777777777778864
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=92.91 Aligned_cols=136 Identities=13% Similarity=0.016 Sum_probs=84.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.|.++||+|||+.+..+....++..+......+.....+..+...++....++.......|.+| +
T Consensus 44 ~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 122 (377)
T TIGR00890 44 FTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-D 122 (377)
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-c
Confidence 344566778889999999999999999888777666555444443332221221112222222223344556778888 4
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
.|+++.++......++..+++.+...+.+..+....+++.++..++..+..+++.+|
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 179 (377)
T TIGR00890 123 KRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY 179 (377)
T ss_pred ccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence 599999999888888877766555555554445556666676666665555555433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-07 Score=93.09 Aligned_cols=138 Identities=17% Similarity=0.104 Sum_probs=89.5
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.++++||+|||+.+..+.....+..+......+.....+..+...++..........+.+|.+|.+
T Consensus 47 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 126 (401)
T PRK11043 47 LSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ 126 (401)
T ss_pred HHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH
Confidence 33446667789999999999999999988776655544443333322221111111111111122233456788999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|.+..+..+....+++.++|.+.+++.+..++...+++.+.+.++..+...+++++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (401)
T PRK11043 127 KANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK 184 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999888888888889998888777666655666666666666655555554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.1e-06 Score=87.80 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHhhhhhhhHhh
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY-----QSNILTTGLLFGARMCVMGAFTVSLIY 367 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (447)
.....+..+...++.+..|++.||+|.|+.+.++.....+..+...+. .+.....+.-+...+. .+.++.....
T Consensus 73 g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~ 151 (462)
T PRK15034 73 FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGN 151 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHH
Confidence 333344455666677788999999999998888777766655544432 1211111111111111 3345566778
Q ss_pred ccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH-----hh-------------chhhHHHHHHHHHHHHHHHHHHhc
Q 013219 368 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV-----AN-------------CHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 368 ~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~-----~~-------------~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
+++.||.+.|+++.|+....+.++..+++++.|.+. .. .+.....+++....+++.+..+++
T Consensus 152 vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 152 ISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999998888887777766665433 11 112233456666666666666665
Q ss_pred cccc
Q 013219 430 PFET 433 (447)
Q Consensus 430 ~pEt 433 (447)
.++.
T Consensus 232 ~~~~ 235 (462)
T PRK15034 232 MNDI 235 (462)
T ss_pred CCCc
Confidence 5443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-07 Score=88.78 Aligned_cols=131 Identities=22% Similarity=0.137 Sum_probs=89.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.|++.||+|||+.+..+.....+..+......+........+...++.....+....+..|.+|.+
T Consensus 40 ~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~ 119 (352)
T cd06174 40 VSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPK 119 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCcc
Confidence 34456677888999999999999999888877776666554444322222122222222222223456678999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSV 426 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~ 426 (447)
.|+++.++.+....++..++|.+.+.+.+..+....+++.+...+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T cd06174 120 ERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL 170 (352)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877665544455555555555544443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.77 E-value=1e-08 Score=85.13 Aligned_cols=97 Identities=19% Similarity=0.255 Sum_probs=77.2
Q ss_pred HHHHHHHHhHhhhHHHHhhhhhCCc----------------------------------------chhhhhhhhcccCCC
Q 013219 66 TTSVFAGLVVGAYAWGLVADNYGRS----------------------------------------GHVFLSWFLEFVPPS 105 (447)
Q Consensus 66 ~s~~~~G~~iG~l~~G~l~Dr~GRr----------------------------------------~~~~~~~~~E~~p~~ 105 (447)
.+...++..+++++.|++.||+||| .+....+..|..|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 4556788999999999999999999 112234567999999
Q ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-HHhhcccCC
Q 013219 106 NRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL-AFLGFQPES 162 (447)
Q Consensus 106 ~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~-~~~~~lpES 162 (447)
+|++..+..+....+|..+++.+...+....+||..+.+.++..++.. ...++.||+
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999988887777677799999988777666654 444556764
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.9e-08 Score=98.42 Aligned_cols=104 Identities=6% Similarity=-0.071 Sum_probs=78.4
Q ss_pred cCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc----------------------------------------hhhh
Q 013219 56 NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------HVFL 95 (447)
Q Consensus 56 ~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------~~~~ 95 (447)
+.+..+.|++.++..++..++.+++|++.||+|||. +...
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~ 337 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVF 337 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667889999999999999999999999999990 1112
Q ss_pred hhhhcccCCCCchhHHHH-HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH-HHHhhcc
Q 013219 96 SWFLEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQ 159 (447)
Q Consensus 96 ~~~~E~~p~~~Rg~~~~~-~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~l 159 (447)
.|+.|..|++.|+...+. ++....+|..+++.+...+.+..|||..+.+.++..++. .+.+..+
T Consensus 338 ~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 338 KYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHh
Confidence 345688999999887654 677788898888877766666779999999866655543 3444343
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-08 Score=95.70 Aligned_cols=113 Identities=12% Similarity=0.103 Sum_probs=91.7
Q ss_pred ccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------------------------------------
Q 013219 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------------------------------------- 91 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------------------------------------- 91 (447)
+.+++++++++.+.+++.+...++.+++.++.|+++||+|||.
T Consensus 241 ~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g 320 (393)
T PRK15011 241 LFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIG 320 (393)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455678999889998888888888999999999999999990
Q ss_pred ---hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccCC
Q 013219 92 ---HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPES 162 (447)
Q Consensus 92 ---~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpES 162 (447)
.....+..|..|+ +||+..++.+...++|..+++.++..+.+..+|+.++.+.+++.++.++..+++||+
T Consensus 321 ~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 321 ILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred HHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 1112345699886 499999999988999999998887777667899999999988888887777777763
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.2e-07 Score=91.91 Aligned_cols=114 Identities=11% Similarity=-0.091 Sum_probs=74.7
Q ss_pred hhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc--hh
Q 013219 302 AEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VR 377 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr-~GRr~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~--~R 377 (447)
......+++|++.|| +|||+.+..+.+...+..+......+ .....+.......+.....+....+.+|.||.+ .|
T Consensus 62 ~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~ 141 (489)
T PRK10207 62 LVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL 141 (489)
T ss_pred HHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence 344455789999999 99999999887766655444443322 111111111111111112234578899999987 45
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHH
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLL 415 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 415 (447)
+.+.++.+...++++.++|.+.+++.+..++...|++.
T Consensus 142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~ 179 (489)
T PRK10207 142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLC 179 (489)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 88899999999999999999999887776655555543
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-07 Score=96.89 Aligned_cols=135 Identities=19% Similarity=0.154 Sum_probs=101.2
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..++..+|.++.|.++||+|||+.++++..+..++.+..++..+.....++-++..++..+...+.+.+.+|+++++
T Consensus 124 ~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~ 203 (521)
T KOG0255|consen 124 QSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPK 203 (521)
T ss_pred HHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcc
Confidence 34456677889999999999999999999999888777765555555444444445555666677778899999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.|+.+..+ ....+.++.+.|....++.. ++.+.++...+..++..++ ++++||.+
T Consensus 204 ~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 204 QRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 99999999 88888888888888877766 3344455555555555444 66677863
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-06 Score=86.77 Aligned_cols=133 Identities=11% Similarity=-0.048 Sum_probs=86.4
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+...+...+.|++.||+|||+.++.+..+..+..+......+. ...-+....+.....+....+.+|++|.+.
T Consensus 45 ~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~ 121 (393)
T PRK11195 45 MFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEK 121 (393)
T ss_pred HHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456677788999999999999999988776655443332222221 111122222333344667889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|+++.|+......++..++|.+.+.+.+.. ....+.+.+.+.+++ .+..+..||.+
T Consensus 122 ~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 122 LVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 999999999998899999999888776642 223333333333333 33445567754
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=93.55 Aligned_cols=138 Identities=18% Similarity=0.039 Sum_probs=87.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhh-hh--HHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS-NI--LTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
..+..++..++.++.|+++||+|||+.++.+..+..+..+....... .. ...+.-+...++.....+....+.+|.+
T Consensus 77 ~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~ 156 (481)
T TIGR00879 77 VSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIA 156 (481)
T ss_pred HHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccC
Confidence 34556777889999999999999999988776665544433322111 11 1111112222222333456788999999
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHH---HHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVA---VALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
|.+.|+++.++.+....++..+++.+. .......++...+++.+...++. ++..++.||+.
T Consensus 157 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~-~~~~~~l~~~~ 220 (481)
T TIGR00879 157 PKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL-FLGLFFLPESP 220 (481)
T ss_pred ChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH-HHHHhcCCCCh
Confidence 999999999999999999999998876 32223334444555544444444 34445567763
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-07 Score=87.89 Aligned_cols=142 Identities=15% Similarity=0.086 Sum_probs=104.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
...+..-++-++.|.++||.+.|..+..+++.+++..+.+++..+-.+..++.+.-..+-..+++.+.-..+--||++-|
T Consensus 72 ~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eR 151 (448)
T COG2271 72 AFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKER 151 (448)
T ss_pred HHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCcccc
Confidence 34555667788999999999999999999999999888877765433333333333444455677888899999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHH--HHHHhhchhhHHHHHHHHHHHHHHHHHHhcc---ccccCCCcc
Q 013219 378 STGAGAANAMGRIGGMVCPLVA--VALVANCHQMTAVVLLVVVIVTSILSVMLIP---FETKGQELS 439 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~---pEtkg~~l~ 439 (447)
++-.++-|...++|+.+.|.+. .++....+....|++=++++++..++.++.. ||+.|.+.-
T Consensus 152 G~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~i 218 (448)
T COG2271 152 GTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPI 218 (448)
T ss_pred CceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCH
Confidence 9999999999999999999888 6555544445556666666666666666654 566676553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.4e-07 Score=85.52 Aligned_cols=124 Identities=15% Similarity=0.071 Sum_probs=73.8
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHH-HHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhh
Q 013219 301 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFL-LPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRS 378 (447)
Q Consensus 301 ~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~-~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~ 378 (447)
.++.+...+.+.++||.||+.....+..+..+.. ..+.+. .++...+.++ +... .. .....|-.++-+.|-+.-+
T Consensus 311 ~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy~~m~~l-GLsy-sl-lAcslWP~va~~vpE~qLG 387 (459)
T KOG4686|consen 311 GISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPYTSMTFL-GLSY-SL-LACSLWPCVASLVPEEQLG 387 (459)
T ss_pred hhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHHHHHHHH-hhhH-HH-HHHHHhhhhhhhCCHHHhc
Confidence 4445566788999999999987765544332221 111221 1222222221 1111 11 1123577788899999999
Q ss_pred hHhhHHHHHHhHhHhHHHHHHHHHHhhchhh---HHHH-HHHHHHHHHHHHHH
Q 013219 379 TGAGAANAMGRIGGMVCPLVAVALVANCHQM---TAVV-LLVVVIVTSILSVM 427 (447)
Q Consensus 379 ~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~---~~~~-~~~~~~~i~~i~~~ 427 (447)
||.|.+..+.+++-.+.|.+.+.+.+.-+.+ -.|+ ..+.++++...+.+
T Consensus 388 Taygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 388 TAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred chHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888766544422 1333 34445555544433
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-06 Score=89.32 Aligned_cols=112 Identities=13% Similarity=-0.057 Sum_probs=70.9
Q ss_pred HHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhhhhHhhccccCCcc--hhhhHh
Q 013219 306 GLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTS--VRSTGA 381 (447)
Q Consensus 306 g~~~~~~l~dr-~GRr~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~--~R~~~~ 381 (447)
...++|++.|| +|||+.+..+..+..+....+....+.. ...+..+....+.....+....+.+|.||.+ .|+.+.
T Consensus 73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~ 152 (500)
T PRK09584 73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAF 152 (500)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcc
Confidence 34689999999 5999998887776555544443322211 1111111111111112234567889999864 345678
Q ss_pred hHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHH
Q 013219 382 GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVV 417 (447)
Q Consensus 382 g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~ 417 (447)
++.+...++++.++|.+.+++.+..++...|.+.++
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i 188 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV 188 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 888999999999999999988776665555555443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.72 E-value=4e-07 Score=92.40 Aligned_cols=137 Identities=13% Similarity=-0.021 Sum_probs=92.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
....+...++.++++++.||+|||+.+..+.+..++..+...... +.....+.-+...++....++....+.+|.+|.
T Consensus 83 s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~ 162 (465)
T TIGR00894 83 SSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPP 162 (465)
T ss_pred HHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCH
Confidence 334567788899999999999999998887776555544332211 111111111222222233345677899999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+.|+++.|+.+....++..++|.+.+++.+.. ++...+.+.+++.++..++.+.+++|.
T Consensus 163 ~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 163 KERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999888776653 555567777766666655555555543
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.1e-06 Score=87.89 Aligned_cols=138 Identities=15% Similarity=0.061 Sum_probs=86.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---Hh-hhh-hHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TY-QSN-ILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~---~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
.....+..+++.++.|+++||+|||+.+..+....++....+. +. .+. ....+..+...++.....+....+..|
T Consensus 58 ~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 137 (417)
T PRK10489 58 VTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA 137 (417)
T ss_pred HHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3444566778889999999999999988766555444332222 11 111 111111111112211223445678899
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.+|.+.|+++.++.+....++..++|.+.+.+.+..+..+.+++.+...+++.+... ..||++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~ 200 (417)
T PRK10489 138 LVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLL-RLPALP 200 (417)
T ss_pred ccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hCCCCC
Confidence 999999999999999999999999998888776655545555555555555544443 445553
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=8.2e-08 Score=90.61 Aligned_cols=133 Identities=17% Similarity=0.125 Sum_probs=89.7
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGL-LFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
.++.+++....-|.++||.|||..++.+.++..++..+.+...+- ...+. =+... +..+-.++.-++.+|++|.+.|
T Consensus 77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F-~afv~aR~l~G-i~kgnl~v~rAiisdV~sek~r 154 (451)
T KOG2615|consen 77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF-AAFVLARFLGG-IFKGNLSVIRAIISDVVSEKYR 154 (451)
T ss_pred HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh-hccCchHHHHHHHHhhcChhhc
Confidence 467888999999999999999999999988877765544432221 11111 11111 2344456889999999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHh---hchhhHHHH--HHHHHHHHH-HHHHHhccccc
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVA---NCHQMTAVV--LLVVVIVTS-ILSVMLIPFET 433 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~---~~~~~~~~~--~~~~~~~i~-~i~~~~~~pEt 433 (447)
+.+++..+....+|-+++|.+.+++-+ ..+.+..++ ++..+.... ..++.++.|||
T Consensus 155 ~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET 216 (451)
T KOG2615|consen 155 PLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPET 216 (451)
T ss_pred cceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999999999999999999887765 222222222 122222222 34455567899
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.9e-07 Score=93.53 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=90.0
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..++.+++.++.|+++||+|||+.++.+.++..+..+...+..+.....+.-+...++..+..+....+.+|.+|.+
T Consensus 133 ~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~ 212 (505)
T TIGR00898 133 QSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKK 212 (505)
T ss_pred HHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChh
Confidence 34456677889999999999999999998887776666554444333222222222333333334567889999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|+.+.++......++.+++|.+.. +... +...+++.++..++..+.. ++.||+
T Consensus 213 ~r~~~~~~~~~~~~~g~~~~~~~~~-~~~~--wr~~~~~~~i~~~~~~~~~-~~~~es 266 (505)
T TIGR00898 213 QRAIVGTLIQVFFSLGLVLLPLVAY-FIPD--WRWLQLAVSLPTFLFFLLS-WFVPES 266 (505)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HhhH--HHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence 9999999987777777777776653 3332 3445666666666655554 556775
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-06 Score=82.96 Aligned_cols=135 Identities=13% Similarity=-0.003 Sum_probs=101.5
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..++..++..+...+.||+.||++++..+.+..+..++.....+.....+.=++..+.....+++...+.+++.|.+.
T Consensus 55 s~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~ 134 (394)
T COG2814 55 TAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK 134 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 34466777888999999999999999988776655555444443332221211122223334456788999999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
|++++++.+.-..++.+++..+..++-+..++..+|+..+.+++++.+..+..+|
T Consensus 135 ~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 135 RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999888888888877777777777888899999999999888888888
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.9e-07 Score=89.78 Aligned_cols=137 Identities=17% Similarity=0.039 Sum_probs=84.8
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh---------hhhh-HHH--HHHHHHHHHHhhhhhhh
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---------QSNI-LTT--GLLFGARMCVMGAFTVS 364 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~---------~~~~-~~~--~~~~~~~~~~~~~~~~~ 364 (447)
....++..++.++.|+++||+|||+.++.+..+..+..+..... .+.. ... +.-+...++..+..+..
T Consensus 62 s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 141 (479)
T PRK10077 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLS 141 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHH
Confidence 34567778899999999999999999887766644443332221 1111 111 11122222333344567
Q ss_pred HhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH--------hhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 365 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV--------ANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 365 ~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
..+.+|.+|.+.|+++.++......++..+++.+...+. +..++...+++.+...++..+. .++.||+.
T Consensus 142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~ 218 (479)
T PRK10077 142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPETP 218 (479)
T ss_pred HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCCc
Confidence 889999999999999999988877777777765543222 2234445555555555554443 45567874
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.6e-06 Score=87.23 Aligned_cols=97 Identities=11% Similarity=0.062 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 304 IPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL--------TTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 304 i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.+|.++.+++.||+|||+.++.+....++..+...+..+... ..+.-+...++....++....+.+|.+|++
T Consensus 70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~ 149 (434)
T PRK15075 70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPG 149 (434)
T ss_pred hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcc
Confidence 467889999999999999998887766665554444322110 011111111122222344568999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
.|+++.++.....+++..+++.+..
T Consensus 150 ~rg~~~~~~~~~~~~g~~~g~~~g~ 174 (434)
T PRK15075 150 RKGFYTSWQSASQQVAVVFAALLGY 174 (434)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887776666555443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.3e-06 Score=85.97 Aligned_cols=135 Identities=21% Similarity=0.111 Sum_probs=81.2
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI--------LTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.+...+|.++.|++.||+|||+.+..+....++..+...+..+.. ...++-+...+...+.++....+.+|.
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 445568899999999999999999888887766655544422210 011111122222333456678899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH--------hhchhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALV--------ANCHQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~--------~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+|.+.|++..++.......+..+++.+...+. ...++...|++.++..++.. +.....||++.
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~ 223 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL-WLRRQLDETSQ 223 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH-HHHhcCCCCch
Confidence 99999999988776665555555554433221 12344455555444444443 33344677643
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=88.69 Aligned_cols=130 Identities=15% Similarity=0.019 Sum_probs=84.0
Q ss_pred hhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHhhhhhhhHhhccccCCcchhhh
Q 013219 301 LAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLL-FGARMCVMGAFTVSLIYAAEIYPTSVRST 379 (447)
Q Consensus 301 ~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ElfP~~~R~~ 379 (447)
+...++..+.|+++||+|||+.++.+.+...+..+......+.+...+.. +...++....+.....+..|.|| +.|++
T Consensus 65 ~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~ 143 (455)
T TIGR00892 65 AVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPL 143 (455)
T ss_pred HHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHH
Confidence 34456677899999999999988877766555544443332222111111 11111111112344567788887 78999
Q ss_pred HhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 013219 380 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 380 ~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
+.|+.+....+++.++|.+.+.+.+..++..++++.+++.+++.+...+..|
T Consensus 144 a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~ 195 (455)
T TIGR00892 144 ANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999988887777666667777777766665555444443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.6e-07 Score=91.46 Aligned_cols=132 Identities=16% Similarity=0.033 Sum_probs=82.4
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT-----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
...+...++.++.|+++||+|||+.+..+.+..++..+.... ..+.....+.-+...++....++....+.+|.+
T Consensus 72 ~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~ 151 (467)
T PRK09556 72 GFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWT 151 (467)
T ss_pred HHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHc
Confidence 345666788899999999999999988777665555443332 111111111112222222233455677899999
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc---hhhHHHHHHHHHHHHHHHHHHhc
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC---HQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
|.+.|+++.|+......+++.+++.+..++.... +....+.+.+++.++..+..+++
T Consensus 152 ~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 152 PRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred CccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988888888887765544432 12233444455554444444444
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-06 Score=86.17 Aligned_cols=125 Identities=14% Similarity=-0.062 Sum_probs=76.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH--hhhh----hHHHHH--HHHHHHHHhhhhhhhHhh
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT--YQSN----ILTTGL--LFGARMCVMGAFTVSLIY 367 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~--~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~ 367 (447)
..+..+...++..+.|+++||+|||+.+..+.....+..+.... ..+. ...... -+....+.....+....+
T Consensus 57 ~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 136 (399)
T PRK05122 57 ISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILW 136 (399)
T ss_pred HHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHH
Confidence 34445666778899999999999999998877665443322221 1111 011111 111111222222344567
Q ss_pred ccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 013219 368 AAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIV 420 (447)
Q Consensus 368 ~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 420 (447)
..|.+|.+.|+++.++......++..++|.+.+.+.+..+....+++.+...+
T Consensus 137 ~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 189 (399)
T PRK05122 137 GIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL 189 (399)
T ss_pred HHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 78999999999999998887788888888887777665554443433333333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.4e-05 Score=74.52 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=40.8
Q ss_pred hhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC-CCCchHHHHhhhHHHHH
Q 013219 96 SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSIPSFI 151 (447)
Q Consensus 96 ~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~-~~~WR~~~~~~~i~~~i 151 (447)
+.+.+.+|+++|+++.++...+.-+|.++++++...+.+ ...=|....++.++.+.
T Consensus 112 ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~ 168 (403)
T PF03209_consen 112 ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIA 168 (403)
T ss_pred HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 456799999999999999999999999998887665443 33444444444444433
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.6e-06 Score=83.58 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=81.6
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHH-HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITI-MFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
..+...+...+.+.++||+|||+.++. +.....+..+......+.....+.-+....+.....+....+..|..|.+.|
T Consensus 42 ~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~ 121 (375)
T TIGR00899 42 SAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGR 121 (375)
T ss_pred HHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcch
Confidence 345566677888999999998876544 4443333333333332222111111111111122234456677888888877
Q ss_pred hhH--hhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 378 STG--AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 378 ~~~--~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
+.+ .+.....+.++..++|.+.+.+.+..++...+++.+.+.+++.+...+..||.+
T Consensus 122 ~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 122 EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 755 466667777888888888877766656556677777776776666666567654
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.3e-06 Score=83.19 Aligned_cols=112 Identities=11% Similarity=-0.022 Sum_probs=70.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---HhhhhhHHH-HHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQSNILTT-GLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.....+...++.++.+.+.||+|||+.+..+..+.++..+... ....+.... ...+....+..........+..|.
T Consensus 54 ~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~ 133 (402)
T TIGR00897 54 FTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYN 133 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHh
Confidence 3455677788999999999999999998887766555433221 111122111 111111111111122344567789
Q ss_pred CCcchhhhHhhHHHHHHhHhH-hHHHHHHHHHHhhch
Q 013219 372 YPTSVRSTGAGAANAMGRIGG-MVCPLVAVALVANCH 407 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~-~~~~~~~~~l~~~~~ 407 (447)
+|.+.|+++.|+.+....++. ..+|.+..++.+..+
T Consensus 134 ~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g 170 (402)
T TIGR00897 134 TKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG 170 (402)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999999999888875 567776666555444
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.5e-06 Score=81.24 Aligned_cols=110 Identities=13% Similarity=-0.061 Sum_probs=72.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 295 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
......+...++.++.++++||+|||+.+..+.....+.........+.....+..+...+......+.......+..|.
T Consensus 46 ~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 125 (381)
T PRK03633 46 VSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTS 125 (381)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 34445667788899999999999999998887766555544444333322222222222222222223334455678888
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
+.|+++.+..+....++..++|.+.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 155 (381)
T PRK03633 126 RNRGRLLAAYMMVYYLGTVLGQLLVSKVST 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999988876544
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-08 Score=104.67 Aligned_cols=128 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------------
Q 013219 35 VAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------------ 90 (447)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------------ 90 (447)
+.+..-...++.+.++++++|++++++.|++.+.+-+|.++..++..+.++|..|-
T Consensus 13 ~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~ 92 (539)
T PF03137_consen 13 LFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLS 92 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhc
Confidence 33444444555567899999999999999999999999999999999999884332
Q ss_pred ------------------------------------------------------------------chhhhhhhhcccCC
Q 013219 91 ------------------------------------------------------------------GHVFLSWFLEFVPP 104 (447)
Q Consensus 91 ------------------------------------------------------------------~~~~~~~~~E~~p~ 104 (447)
.++..+|+-|..++
T Consensus 93 ~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~ 172 (539)
T PF03137_consen 93 GPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSK 172 (539)
T ss_dssp -----------------------------------------------------------SSS------------------
T ss_pred CCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccc
Confidence 35566788899999
Q ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHHcC--------C------------C--CchHHHHhhhHHHHHHHHHhhcccCC
Q 013219 105 SNRGMWMVIFSSFWTIGSVSEAIGAWIIMP--------R------------L--DWRWLLGLSSIPSFILLAFLGFQPES 162 (447)
Q Consensus 105 ~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~--------~------------~--~WR~~~~~~~i~~~i~~~~~~~lpES 162 (447)
+.-+...++.+....+|..++.+++..+.. . | .|-.-|++.+...++..+.+++.|.+
T Consensus 173 ~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 173 KNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999998877766654211 0 0 36666666666666655555555544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.9e-06 Score=83.97 Aligned_cols=137 Identities=18% Similarity=0.108 Sum_probs=89.6
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH---hh--hhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQ--SNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
....+..++..+++|.++||+.||++++.+-....+....+.. .. +.+...++.+....+.....+...++.+|+
T Consensus 52 ~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~l 131 (524)
T PF05977_consen 52 AASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPEL 131 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334555667788999999999999998766655443322221 11 222222222233223333335678899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|.+.-..++++.....++...++|.+.+.++...+....|++-++..++...+.....++.
T Consensus 132 V~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~ 193 (524)
T PF05977_consen 132 VPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPP 193 (524)
T ss_pred ccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 99999999999999999999999999988777766665666665655555544444444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.6e-06 Score=82.12 Aligned_cols=124 Identities=13% Similarity=-0.001 Sum_probs=81.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
+..+...++.++.+++.||+|||+.+..+..+.++..+...+.++.....+.-+...++.....+....+..|.|| +.|
T Consensus 52 ~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~ 130 (393)
T PRK09705 52 LPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRT 130 (393)
T ss_pred HHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccc
Confidence 3455667788999999999999999999888877777666554433222222222222222233344567788898 679
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHH
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTS 422 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~ 422 (447)
+.+.|.......+++.+++.+.+++.+.. ++...+.+++...++.
T Consensus 131 ~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~ 176 (393)
T PRK09705 131 PLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA 176 (393)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999998888888888888887766543 3334444444444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.8e-06 Score=81.64 Aligned_cols=134 Identities=14% Similarity=0.047 Sum_probs=81.7
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHH----HHHHHHHhhhhhhhHhhcccc
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLL----FGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~El 371 (447)
.+...+|.++.|++.||+|||+.+..+..+.++..+...+..+.. .....+ +...+...+.++....+.+|.
T Consensus 74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~ 153 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVES 153 (438)
T ss_pred HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHh
Confidence 445678889999999999999999988877777665555433211 111111 122222233345567899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh--------hchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA--------NCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
+|.+.|++..+.......++..+++.+...+.. ..++...|++.++..++. +.....+||++
T Consensus 154 ~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~ 223 (438)
T PRK09952 154 APKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIA-LWVRNGMEESA 223 (438)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHH-HHHHHhCCCCh
Confidence 999999998888877767777666554433321 234444555544443332 33334457764
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.5e-06 Score=83.29 Aligned_cols=129 Identities=16% Similarity=0.162 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhhh-----ChhHH-HHHHHHHHHHHHHHHHHhh--hhh-HHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 305 PGLLLAAILVDTA-----GRKLS-ITIMFTLSCLFLLPLVTYQ--SNI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 305 ~g~~~~~~l~dr~-----GRr~~-l~~~~~~~~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.+.++.+.++||+ |||+. +..+.+...+....+.+.. .+. ......+...++.........++.+|.+|.+
T Consensus 60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~ 139 (491)
T PRK11010 60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAE 139 (491)
T ss_pred HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 5778999999999 99885 4455554444444444321 111 1121222222333333455688999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVA-NCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.|+++.++.....+++..+++.+..++.+ ..++...|++.+++.++..+...+ .||+.
T Consensus 140 ~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~ 198 (491)
T PRK11010 140 ERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPT 198 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999888777766 345556677777666666554444 57764
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=80.40 Aligned_cols=108 Identities=18% Similarity=0.030 Sum_probs=72.4
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--h-hhhHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q-SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.....+...++.+..+++.||+|||+.+..+.....+..+..... . +.....+..+..........+....+..|+.
T Consensus 44 ~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~ 123 (410)
T TIGR00885 44 QSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMG 123 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHC
Confidence 344566778888999999999999999988887666554433221 1 1111111112222222222334456778899
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
|.+.|++..++.+....+++.++|.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 124 PESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998876654
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=9.6e-06 Score=80.29 Aligned_cols=112 Identities=13% Similarity=-0.104 Sum_probs=69.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH--H-Hhh----hh-hHHHHHHHHHHHHHhhhhhhhHhhc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--V-TYQ----SN-ILTTGLLFGARMCVMGAFTVSLIYA 368 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l--~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (447)
....+...++..+.|+++||+|||+.++.+.+.+.+..+.. . ... .+ ....+.-+....+.....+....+.
T Consensus 58 s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 137 (392)
T PRK12382 58 GIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWG 137 (392)
T ss_pred HHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778899999999999999887766544432211 1 111 11 1111111111111112223445677
Q ss_pred cccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchh
Q 013219 369 AEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQ 408 (447)
Q Consensus 369 ~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~ 408 (447)
.|.+|.+.|+++.++......++..++|.+.+.+.+..+.
T Consensus 138 ~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 138 LGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred HhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 8999999999999998887778888888887766555443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.1e-06 Score=92.77 Aligned_cols=108 Identities=14% Similarity=-0.022 Sum_probs=73.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT---YQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
+..+..+++.+++|+++||+|||++++.+..+..+..+.... ..+.....+..++..++.....+....+.+|++|.
T Consensus 55 ~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~ 134 (1146)
T PRK08633 55 LFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGK 134 (1146)
T ss_pred HHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCc
Confidence 345566778889999999999999988776554433322221 11211112222222222223335567899999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
+.|++++|+......++.+++|.+.+++...
T Consensus 135 ~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 135 ENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888776654
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.7e-06 Score=82.47 Aligned_cols=115 Identities=16% Similarity=0.208 Sum_probs=80.5
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhh---CCc-c------------------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNY---GRS-G------------------------------ 91 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~---GRr-~------------------------------ 91 (447)
.+.|-+++++++++.+.....++..+...+- .++|.++|.+ |+| .
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 3457778889999999988888888776654 7889999965 433 0
Q ss_pred ---------------hhhhhhhhcccC--CCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHH-
Q 013219 92 ---------------HVFLSWFLEFVP--PSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILL- 153 (447)
Q Consensus 92 ---------------~~~~~~~~E~~p--~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~- 153 (447)
.+.=+.+.|... |+.||...+.......+|.+++..++..+....++|..|.+.++.+.+..
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~ 169 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLI 169 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHH
Confidence 000012346663 23378889999999999999988877666677889999888766555554
Q ss_pred HHhhcccC
Q 013219 154 AFLGFQPE 161 (447)
Q Consensus 154 ~~~~~lpE 161 (447)
...+..+|
T Consensus 170 ~~~~~~~e 177 (433)
T PF03092_consen 170 VALFLLEE 177 (433)
T ss_pred HHHHhhhh
Confidence 44444454
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.1e-05 Score=76.79 Aligned_cols=279 Identities=18% Similarity=0.161 Sum_probs=152.1
Q ss_pred HHHHHHhHhhhHHHHhhhhhCCc-------------------------------------chhhhhhhhcccCCCCchhH
Q 013219 68 SVFAGLVVGAYAWGLVADNYGRS-------------------------------------GHVFLSWFLEFVPPSNRGMW 110 (447)
Q Consensus 68 ~~~~G~~iG~l~~G~l~Dr~GRr-------------------------------------~~~~~~~~~E~~p~~~Rg~~ 110 (447)
...+..++.+...|-++||+||| .....+|++..+..+.|...
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~~~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~ 149 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGYWFFLLLGLSGGFSAIFSVGFAYVADISSEEERSSS 149 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHHHHhhhcccccchhhhhhhhhhheeeccchhHHHHH
Confidence 44667788999999999999999 12234567899999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCC
Q 013219 111 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTK 189 (447)
Q Consensus 111 ~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~ 189 (447)
.++.+..+..|..+++..+.......+--..+.+.....++. .+.+.++|||-. .+.+.+ + +
T Consensus 150 ~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~-~------------~- 212 (463)
T KOG2816|consen 150 IGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD-A------------T- 212 (463)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC---cccccc-c------------c-
Confidence 999999888888888777766655567777888887777665 455678999854 111111 0 0
Q ss_pred CCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013219 190 LPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISE 269 (447)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 269 (447)
.. +.+..+.. ..... .....+.+.+.+|..+.+....+ +.+. +.
T Consensus 213 ~~--------~~~~~~~~----------------~~~~~---~~~~~~~~~~~~r~~l~l~l~~~---~~~~------~~ 256 (463)
T KOG2816|consen 213 LR--------ELTPGSLD----------------SSHVA---DAFQSLTKVGPDRLLLLLLLVAF---LSSL------PE 256 (463)
T ss_pred cc--------ccCCCccc----------------chhhh---hhhhhhcccCCCccchHHHHHHH---HHHH------HH
Confidence 00 00000000 00000 01111222222222222221111 1111 11
Q ss_pred hh-cccccccCCCcccCCCCChhhHH-HHHHHHhhhhhHHHHHH-HHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 013219 270 LS-SLDTRCRSPLMFSHHPQDANLYI-DEFITSLAEIPGLLLAA-ILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILT 346 (447)
Q Consensus 270 l~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~i~g~~~~~-~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~ 346 (447)
.. ..+.. ... ....-.-+.+.+. .....+..+.+++++.. .+...+|-|+.+..+...-.+.....++....+..
T Consensus 257 ~~~~~~~~-~~y-l~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~ 334 (463)
T KOG2816|consen 257 AGGASDVL-LLY-LKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMM 334 (463)
T ss_pred hcCceeEE-EEE-EeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhh
Confidence 00 00000 000 0000011111111 12334556666777766 67777888886555555444444444444333321
Q ss_pred HH-HHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 347 TG-LLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 347 ~~-~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
.. .++.+ ......+....+.+-+-..+-+++..++...+..+.++++|.++..+.
T Consensus 335 ~~~~v~~~--~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 335 FAAGVVVA--LAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred hHHHHHHH--hhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 11 11111 112233456778888899999999999999999999999998886543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-05 Score=78.60 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+.-+++++..++.+.+++|+|+-+.+..++++-..=++.+.+..+.|.+.-+=++-.......|...-.|.+...|++.
T Consensus 413 a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l 492 (618)
T KOG3762|consen 413 ALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGL 492 (618)
T ss_pred hhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc
Confidence 34456778889999999999999988877776555544455555555543322222333334456677789999999999
Q ss_pred hhhHhhHHHHHHh-HhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHH
Q 013219 377 RSTGAGAANAMGR-IGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVM 427 (447)
Q Consensus 377 R~~~~g~~~~~~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~ 427 (447)
|+++.++...... +|-.+++++.+.+.+..+...+|-++++.+++..++..
T Consensus 493 ~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 493 RATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred hHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence 9999998866653 55555566666556666666667777776666554444
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=91.19 Aligned_cols=135 Identities=14% Similarity=-0.073 Sum_probs=83.0
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHH--HHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCL--FLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~--~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..++...++|.++||+|||+++.....+..+ ....+.+. .+.+...++.++...+.....+....+..|++|.+
T Consensus 61 ~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~ 140 (1140)
T PRK06814 61 FILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKD 140 (1140)
T ss_pred HHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCcc
Confidence 3455667788999999999999976432222111 11111221 22222222223333333334467888999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.|++++|+.++...++..++|.+.+++....++...++..+++.+++. ...+..|+++
T Consensus 141 ~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 198 (1140)
T PRK06814 141 ELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGW-LASLFIPKTG 198 (1140)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHhhCCCCC
Confidence 999999999999999999999999888776554444422333333333 3344445553
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.9e-06 Score=83.73 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=75.1
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
..+....+..+.|.++|.+|||..++.+.+...+-.+.....++. .......+.. +. .+...+....++|+.|.|-|
T Consensus 87 ~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~G-vg-aG~~~~~~~~isEl~p~k~R 164 (599)
T PF06609_consen 87 WTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYG-VG-AGVQELAALAISELVPNKWR 164 (599)
T ss_pred HHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHH-Hh-hHHHHHHHHHHHHhcccchh
Confidence 455667777889999999999999988777665555443432221 1111111111 11 22233456678999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSIL 424 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i 424 (447)
..+.++.....-+....+|.+...+....++.+.|.++++...++++
T Consensus 165 ~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 165 GLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred hhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 98887776554455556666664443333455666666655544443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.3e-05 Score=77.18 Aligned_cols=142 Identities=18% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHH-Hhhhhhh
Q 013219 287 PQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QSNILTTGLLFGARMC-VMGAFTV 363 (447)
Q Consensus 287 ~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~-~~~~~~~ 363 (447)
.+..+......+..+...+.=+.-+++.||+|-|+....+++...+-.+.+.+. +... ...+++..... .-+.+++
T Consensus 46 LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~-~~ll~~gll~G~~GasFav 124 (417)
T COG2223 46 LSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPST-WQLLVIGLLLGLAGASFAV 124 (417)
T ss_pred CCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCch-HHHHHHHHHHhcccceehc
Confidence 333454555555566666677889999999999988887777666555444432 2211 12222222222 2234566
Q ss_pred hHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch---hhHHHHHHHHHHHHHHHHHHhcc
Q 013219 364 SLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH---QMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 364 ~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
...++++-||.|.++++.|+.. .+++|..+..++.|.+....+ +..+..++....++.++..++..
T Consensus 125 ~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~ 193 (417)
T COG2223 125 GMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGM 193 (417)
T ss_pred ccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7789999999999999999999 999999999888887776655 44556667766666666666654
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-06 Score=82.10 Aligned_cols=140 Identities=16% Similarity=0.100 Sum_probs=103.9
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNIL-TTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..-.+.+++.+.+.|.++||+|+|..++++++.+....++..+..+... ..+-. .-............++.++.||.+
T Consensus 113 askA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~-LQgvgsA~~~tsglamlAd~f~~d 191 (464)
T KOG3764|consen 113 ASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARS-LQGVGSAFADTSGLAMLADVFPED 191 (464)
T ss_pred HHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHH-HhhhhHHHHHhhhHHHHHHHcccc
Confidence 3446678888899999999999999999999888877766666544331 11111 111222223345577889999986
Q ss_pred h-hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 376 V-RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 376 ~-R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
. |++++|++-.+..+|-.++|.+.+.+.+..|...+|++.++++++....-++..+-+|..+
T Consensus 192 ~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 192 NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 6 7999999999999999999998888888878778899999998888777777665444443
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.2e-05 Score=78.18 Aligned_cols=122 Identities=12% Similarity=0.126 Sum_probs=71.7
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh-----hhhHHH-HHHHHHHHHHhhhhhhhHhhccccCCcchhhh
Q 013219 306 GLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ-----SNILTT-GLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 379 (447)
Q Consensus 306 g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~ 379 (447)
+.++.|++.||+|||+.+.++.++..+..+..+... .+.... +..+...+.....+........+.|| +.|++
T Consensus 77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~ 155 (591)
T PTZ00207 77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGA 155 (591)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHH
Confidence 445789999999999999988877666655444321 111111 11111222222223345566788898 67999
Q ss_pred HhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhc
Q 013219 380 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLI 429 (447)
Q Consensus 380 ~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~ 429 (447)
+.|+......+++.+.+.+...+... +....+++.+...++..++.+.+
T Consensus 156 a~Gi~~~~~gLGsaI~~~l~~~l~~~-~~~~~fl~l~vl~~vv~ll~~~~ 204 (591)
T PTZ00207 156 VVAIMKTFTGLGSAILGSIQLAFFSD-NTSAYFFFLMSFALVVGILAIVF 204 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999887655455433332 22233455555554444444443
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=78.16 Aligned_cols=128 Identities=20% Similarity=0.169 Sum_probs=80.9
Q ss_pred HHHHHHHHhhh-----ChhHHH-HHHHHHHHHHHHHHHHhhh--hh-HHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 307 LLLAAILVDTA-----GRKLSI-TIMFTLSCLFLLPLVTYQS--NI-LTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 307 ~~~~~~l~dr~-----GRr~~l-~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
.++.+.++||+ |||+.+ +.+.+..++.+..+.+..+ .. ......+....+.....+....+.+|.+|.+.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 67899999997 898875 4444444444444443211 11 111111122222222334567889999999999
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhch--------hhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCH--------QMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
+.+.++......++.++++.+...+....+ +...+++.+++.+++.+...+..||++
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 999999988888988888888776655544 445566666666665555555567754
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-06 Score=88.08 Aligned_cols=104 Identities=15% Similarity=0.077 Sum_probs=80.8
Q ss_pred CcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------c--------------------------hhh
Q 013219 59 STEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------G--------------------------HVF 94 (447)
Q Consensus 59 ~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------~--------------------------~~~ 94 (447)
.++.+.+.++..++..++.++.|+++||+||| . +..
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~ 329 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISG 329 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35668899999999999999999999999999 0 001
Q ss_pred hhhhhcccCCCCchhHHHHHH-HHHhhhhHHHHHHHHHHcCC------CCchHHHHhhhHHHHHH-HHHhhcccCC
Q 013219 95 LSWFLEFVPPSNRGMWMVIFS-SFWTIGSVSEAIGAWIIMPR------LDWRWLLGLSSIPSFIL-LAFLGFQPES 162 (447)
Q Consensus 95 ~~~~~E~~p~~~Rg~~~~~~~-~~~~iG~l~~~~~~~~~~~~------~~WR~~~~~~~i~~~i~-~~~~~~lpES 162 (447)
..++.|+.|++.||+..++.+ ..+.+|..+++.++..+.++ ++||..+.+.++..++. .+..+++|||
T Consensus 330 ~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 330 SVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 123569999999999999997 67889998888877654432 57999999887776665 4445667876
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.8e-05 Score=75.53 Aligned_cols=108 Identities=14% Similarity=0.001 Sum_probs=70.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
.......+...++.++.+.++||+|||+.+..+.....+..+... ...+.....+..+...++..........+..|
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~ 144 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334455677788899999999999999999888776665544322 12222212222222222222333445666778
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHH
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVA 401 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~ 401 (447)
..|.+.|....++.+....++..++|.+...
T Consensus 145 ~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred hCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888878778888888888888888877544
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.35 E-value=9e-06 Score=79.94 Aligned_cols=101 Identities=20% Similarity=0.202 Sum_probs=66.5
Q ss_pred hhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHH----HHHHHhhhhhhhHhhccccCC
Q 013219 302 AEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNI----LTTGLLFG----ARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 302 ~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~ElfP 373 (447)
...++.++.|+++||+|||+.+..+..+..+..+......+.. .....++. ..+......+....+.+|.+|
T Consensus 47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~ 126 (394)
T TIGR00883 47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP 126 (394)
T ss_pred HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC
Confidence 3356788999999999999999887776665554444322211 10111111 111112223445678999999
Q ss_pred cchhhhHhhHHHHHHhHhHhHHHHHHHHH
Q 013219 374 TSVRSTGAGAANAMGRIGGMVCPLVAVAL 402 (447)
Q Consensus 374 ~~~R~~~~g~~~~~~~i~~~~~~~~~~~l 402 (447)
.+.|++..++......++.++++.+...+
T Consensus 127 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~~ 155 (394)
T TIGR00883 127 PGKRGFYGSFQQVGAPVGLLLAALTVLLL 155 (394)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888765443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.1e-05 Score=76.80 Aligned_cols=108 Identities=13% Similarity=-0.036 Sum_probs=68.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
..+..+...++.++.++++||+|||+.+..+.....+..+.. ...+.....+..+...+......+....+..|.+| +
T Consensus 41 ~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~ 118 (355)
T TIGR00896 41 TALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-Q 118 (355)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-c
Confidence 344566777888999999999999999887766544433332 22222111111111111111122334556788887 5
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
.|+++.++.+....++..+++.+.+.+.+.
T Consensus 119 ~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~ 148 (355)
T TIGR00896 119 RVGLMTGLYSMALMGGAALAAAATVPLAQH 148 (355)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999998888888888877666554
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.1e-05 Score=75.89 Aligned_cols=139 Identities=9% Similarity=0.007 Sum_probs=82.5
Q ss_pred HHHHHhhhhhHHHHHHHHHh----hhChhHHHHHH-HHHHHHHHHHHHHhhh-------------hhH----HHHHHHHH
Q 013219 296 EFITSLAEIPGLLLAAILVD----TAGRKLSITIM-FTLSCLFLLPLVTYQS-------------NIL----TTGLLFGA 353 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~d----r~GRr~~l~~~-~~~~~~~~~~l~~~~~-------------~~~----~~~~~~~~ 353 (447)
..+..+..++...+.|+++| |+|||+.++.. .....+.+..+....+ ... ..+.+...
T Consensus 45 ~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~ll 124 (477)
T TIGR01301 45 WLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWIL 124 (477)
T ss_pred HHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHH
Confidence 44556677778889999999 59999988764 3433333333332111 000 01111111
Q ss_pred HHHHhhhhhhhHhhccccCCcchh--hhHhhHHHHHHhHhHhHHHHHHHHHH--hh--------c-----hhhHHHHHHH
Q 013219 354 RMCVMGAFTVSLIYAAEIYPTSVR--STGAGAANAMGRIGGMVCPLVAVALV--AN--------C-----HQMTAVVLLV 416 (447)
Q Consensus 354 ~~~~~~~~~~~~~~~~ElfP~~~R--~~~~g~~~~~~~i~~~~~~~~~~~l~--~~--------~-----~~~~~~~~~~ 416 (447)
.+......+...++.+|+.|.+.| ..+.++.+.+..+|+++++.+..+.. +. . +....|++-+
T Consensus 125 d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a 204 (477)
T TIGR01301 125 DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDI 204 (477)
T ss_pred HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHH
Confidence 222333334567899999999876 46788888888888888876554321 10 0 1123455555
Q ss_pred HHHHHHHHHHHhcccccc
Q 013219 417 VVIVTSILSVMLIPFETK 434 (447)
Q Consensus 417 ~~~~i~~i~~~~~~pEtk 434 (447)
++.+++.+...+..+|..
T Consensus 205 ~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 205 ILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHeeeeeccC
Confidence 666777777777777854
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-05 Score=81.74 Aligned_cols=136 Identities=22% Similarity=0.150 Sum_probs=86.6
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
.....++..+|.++.+.++|++|||+.++.+.+...+..++.....+.....+.=+...++..+...+...|.+|+-|++
T Consensus 95 ~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~ 174 (513)
T KOG0254|consen 95 TSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAH 174 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChh
Confidence 34457788899999999999999999988877665554444444333221111111222222222346788999999999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANC--HQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.|+.-.+.......++..++ ++..+...+. ++...+.+..+.+++..+. .++.||+
T Consensus 175 ~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 175 IRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 99999998877777555555 4554444432 3334455556666666666 6666776
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=76.46 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=78.8
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh---hhh-hHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY---QSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
+..+++++|.++.++++||+|||..+.++.+......+..... ... .+...-++.+..+ .........|..|+-|
T Consensus 68 ~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~-gl~~~~~pmyl~E~sP 146 (485)
T KOG0569|consen 68 IFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLAC-GLSTGLVPMYLTEISP 146 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-HHHHHHHHHHHhhcCh
Confidence 3456778899999999999999988877666544433333221 111 1111111111111 1122456789999999
Q ss_pred cchhhhHhhHHHHHHhHhHhHHHHHH-HHHHhhchhhHHHH-HHHHHHHHHHHHHHhccccc
Q 013219 374 TSVRSTGAGAANAMGRIGGMVCPLVA-VALVANCHQMTAVV-LLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 374 ~~~R~~~~g~~~~~~~i~~~~~~~~~-~~l~~~~~~~~~~~-~~~~~~~i~~i~~~~~~pEt 433 (447)
.+.||....+......++..++..+. +.++.+-. .|+++ .+..+..+...+...+.||+
T Consensus 147 ~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~-~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 147 KNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTED-LWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCc-chHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999888887777777777764333 55543322 23343 33334344444556667887
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.0002 Score=71.19 Aligned_cols=129 Identities=12% Similarity=0.085 Sum_probs=85.3
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhh
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 379 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~ 379 (447)
.....++.+.+|++.||+|-|+.+..+.+.-+++.++..+..+.....++-+..+.+-.+.+ ..+.+....||.+-|++
T Consensus 72 ~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r 150 (511)
T TIGR00806 72 PYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR 150 (511)
T ss_pred HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence 44567778899999999999999988888777766655554332211222122222222333 67889999999999999
Q ss_pred HhhHHHHHHhHhHhHHHHHHHHHHhhchhhHH-HH-HHH-HHHHHHHHHHHhcc
Q 013219 380 GAGAANAMGRIGGMVCPLVAVALVANCHQMTA-VV-LLV-VVIVTSILSVMLIP 430 (447)
Q Consensus 380 ~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~-~~-~~~-~~~~i~~i~~~~~~ 430 (447)
++|+.+....+|.++++.+.+.+ ...++... .+ ... ....+++++.++++
T Consensus 151 atsi~~sg~~vG~~Ia~~L~qll-~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 151 AAAYSRAAVLLGVFLSSVLGQLL-VTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999988874 44343221 12 122 23345555555554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00018 Score=71.59 Aligned_cols=131 Identities=15% Similarity=0.073 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHhhh-----ChhH-HHHHHHHHHHHHHHHHHHhh--hhhHHHH-HHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 304 IPGLLLAAILVDTA-----GRKL-SITIMFTLSCLFLLPLVTYQ--SNILTTG-LLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 304 i~g~~~~~~l~dr~-----GRr~-~l~~~~~~~~~~~~~l~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
.+..++.+.++||+ |||+ .+..+..++++.+..+.... .+..... ..+...++.....+....+.+|.+|.
T Consensus 46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~ 125 (402)
T PRK11902 46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHP 125 (402)
T ss_pred HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 45678899999999 8876 55665665555554444432 1121111 11122222233334668899999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+.|+++.++......++..+++.+..++.+.. ++...+++.+.+.+++.+. .+..||++.
T Consensus 126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~ 186 (402)
T PRK11902 126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEV 186 (402)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCcc
Confidence 99999999999888888888887776666542 4555666666665555443 344567643
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.8e-06 Score=82.55 Aligned_cols=146 Identities=14% Similarity=-0.046 Sum_probs=93.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
....+.+.+...++|++.||.+||+++.++..+=.+..+.-++...-+...++-.+....-....++...+.+++||...
T Consensus 75 ~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~ 154 (493)
T KOG1330|consen 75 TVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK 154 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh
Confidence 34456677788999999999999999988776544444443333111211211111111222334567789999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhccccccCCCccccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTV 442 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~~ 442 (447)
|++..++.+....+|++++-.+...+-+..+ +.+.+..-+++.+++.+...++.+|...+.-||..
T Consensus 155 Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 155 RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc
Confidence 9999999999988877665433322222111 33457777778888888888888887654444443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0011 Score=64.87 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=90.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhccccccc-ccCCCcchh-HHHHHHHHHHhHhhhHHHHhhhhhCCcc--------
Q 013219 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSE-WNLSSTEES-LITTSVFAGLVVGAYAWGLVADNYGRSG-------- 91 (447)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~-~i~s~~~~G~~iG~l~~G~l~Dr~GRr~-------- 91 (447)
|.+..+++|..|++-+-- -.-.|..|.+..+ .|++++|.. -+--...-.++...++...+.|..|-|.
T Consensus 3 w~~~~~llc~~gf~~~fr--PsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~ 80 (412)
T PF01770_consen 3 WKKITLLLCLFGFFKEFR--PSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALS 80 (412)
T ss_pred chHHHHHHHHHHHHHhcC--CCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344455566555543211 1113334444444 577766642 2333444577888999999999999991
Q ss_pred -------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc--CCCCc
Q 013219 92 -------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--PRLDW 138 (447)
Q Consensus 92 -------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~--~~~~W 138 (447)
....+|+--..|+++-.++.+......-+|..++++++-.+. ...+.
T Consensus 81 ~i~t~~lll~~~sv~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy 160 (412)
T PF01770_consen 81 YIITWLLLLFGTSVLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSY 160 (412)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 122234445557777678888888888888888777775543 34568
Q ss_pred hHHHHhhhHHHHHHHHHhhcccCChHHHH
Q 013219 139 RWLLGLSSIPSFILLAFLGFQPESPRYLC 167 (447)
Q Consensus 139 R~~~~~~~i~~~i~~~~~~~lpESP~~L~ 167 (447)
+.+..+......+..+..+++|-.++=+-
T Consensus 161 ~~L~~isl~~~~~a~~~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 161 FQLNYISLASVSLALLIALFLPMPKRSLF 189 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccc
Confidence 88888877766666777778888666443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.5e-05 Score=76.74 Aligned_cols=137 Identities=16% Similarity=0.136 Sum_probs=108.9
Q ss_pred HHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------- 90 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------- 90 (447)
.+.++..+.+++-...+.....+++++|++++++.|++.+.+-+|..+...+..+.+-|.-|-
T Consensus 100 ~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~ 179 (735)
T KOG3626|consen 100 VLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLF 179 (735)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHH
Confidence 334466667777666667778889999999999999999999999999999999999996654
Q ss_pred ---------------------------------------------------------------------------chhhh
Q 013219 91 ---------------------------------------------------------------------------GHVFL 95 (447)
Q Consensus 91 ---------------------------------------------------------------------------~~~~~ 95 (447)
.++.+
T Consensus 180 alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGi 259 (735)
T KOG3626|consen 180 ALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGI 259 (735)
T ss_pred hChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCC
Confidence 34456
Q ss_pred hhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc----C-------------CC--CchHHHHhhhHHHHHHHHHh
Q 013219 96 SWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM----P-------------RL--DWRWLLGLSSIPSFILLAFL 156 (447)
Q Consensus 96 ~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~----~-------------~~--~WR~~~~~~~i~~~i~~~~~ 156 (447)
+|+-|...++.-....++......+|-.++.+++.+.. + .| .|..-|++++...++..+.+
T Consensus 260 sYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~ 339 (735)
T KOG3626|consen 260 SYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL 339 (735)
T ss_pred ccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999888877776531 0 01 38888888888888887778
Q ss_pred hcccCChH
Q 013219 157 GFQPESPR 164 (447)
Q Consensus 157 ~~lpESP~ 164 (447)
++.|....
T Consensus 340 f~fPk~lp 347 (735)
T KOG3626|consen 340 FFFPKELP 347 (735)
T ss_pred HhCcccCc
Confidence 88776643
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.3e-05 Score=73.39 Aligned_cols=118 Identities=20% Similarity=0.203 Sum_probs=89.1
Q ss_pred HHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch-----------------------------
Q 013219 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH----------------------------- 92 (447)
Q Consensus 42 ~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~----------------------------- 92 (447)
..++...|++++.+|+|-+|...+..+-.+|..+| ++.|.+.|++|.+..
T Consensus 19 Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~ 97 (250)
T PF06813_consen 19 YTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW 97 (250)
T ss_pred cchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH
Confidence 44566679999999999999999999999999986 899999999999900
Q ss_pred ------------------hhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH
Q 013219 93 ------------------VFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 93 ------------------~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~ 154 (447)
....-..+.+| +.||+++++.-.+..++..+-..+...+.+...-+.+..+...|.++.++
T Consensus 98 ~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 98 LMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 00011237777 57999999999999998776555555555556677788888888877666
Q ss_pred HhhcccC
Q 013219 155 FLGFQPE 161 (447)
Q Consensus 155 ~~~~lpE 161 (447)
..+++.+
T Consensus 177 ~~~~vr~ 183 (250)
T PF06813_consen 177 AMFFVRP 183 (250)
T ss_pred Hhhheec
Confidence 6555433
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.5e-05 Score=74.92 Aligned_cols=137 Identities=20% Similarity=0.163 Sum_probs=101.8
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhh
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRST 379 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~ 379 (447)
++..++.+.+-|.++||+|||..+......+.+-...+.+.. ++..+ +..........++....+.+++-..+.|+.
T Consensus 72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~~R~~ 148 (463)
T KOG2816|consen 72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL-LLGLSGGFSAIFSVGFAYVADISSEEERSS 148 (463)
T ss_pred HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh-hcccccchhhhhhhhhhheeeccchhHHHH
Confidence 455667778889999999999999888877666544444332 11111 222212223344567889999999999999
Q ss_pred HhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCcc
Q 013219 380 GAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELS 439 (447)
Q Consensus 380 ~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~ 439 (447)
+.|+.+..-+.+..++|.+..++....+...++++-++..+++.++..+.+||+...+.+
T Consensus 149 ~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 149 SIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 999999999999999999888887776666677778888888999999999998655444
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.3e-05 Score=78.22 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=70.3
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh----------------------------h--------
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ----------------------------S-------- 342 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~----------------------------~-------- 342 (447)
..++..++.++.+++.||.|||+.+.++.++.++..++....+ +
T Consensus 77 ~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 156 (633)
T TIGR00805 77 YEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPT 156 (633)
T ss_pred hhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCcccc
Confidence 3455667788999999999999988776665554443332211 0
Q ss_pred ---------h--hHHHHHHHHHHH----HHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 343 ---------N--ILTTGLLFGARM----CVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 343 ---------~--~~~~~~~~~~~~----~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
. .....+++.+.+ +....+++...+..|.+|.+.|++..|+.+....++..+++.+.+++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 157 QCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQ 233 (633)
T ss_pred ccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 0 000111122222 1222334567899999999999999999999999998888888776654
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0026 Score=63.03 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=91.0
Q ss_pred HHHhcCCc-hHHHHHHHHHhhH--HHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hC
Q 013219 13 ALTHVGFG-KYQCFVLAYAGLG--WVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YG 88 (447)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~G 88 (447)
..++-.++ ++..+.++..-+. +.++++......+..-+..+.+++++++..-+.+++..=--+-.++.|+++|| +|
T Consensus 11 ~~~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG 90 (498)
T COG3104 11 TLEMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLG 90 (498)
T ss_pred ccccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33333344 5555544443332 23344444444555555555566887776656666554444677899999997 48
Q ss_pred Cc------------------------------------------chhhhhhhhcccCCCC--chhHHHHHHHHHhhhhHH
Q 013219 89 RS------------------------------------------GHVFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVS 124 (447)
Q Consensus 89 Rr------------------------------------------~~~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG~l~ 124 (447)
+| .+...+.+.|..|++. |....+++....++|.++
T Consensus 91 ~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~ 170 (498)
T COG3104 91 TRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLI 170 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHH
Confidence 88 0111223457777644 566667788889999999
Q ss_pred HHHHHHHHcCCCCchHHHHhhhHHHHHHHHH
Q 013219 125 EAIGAWIIMPRLDWRWLLGLSSIPSFILLAF 155 (447)
Q Consensus 125 ~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 155 (447)
++++...+..+.+|...|.++++-..+.++.
T Consensus 171 ~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~ 201 (498)
T COG3104 171 APIITGLLAINYGWHVGFGLAAVGMIIGLVI 201 (498)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence 9998888888889999999887755554433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.4e-05 Score=74.81 Aligned_cols=153 Identities=15% Similarity=0.069 Sum_probs=103.2
Q ss_pred HHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc--ccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhC-
Q 013219 12 EALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSE--WNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG- 88 (447)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~G- 88 (447)
+..+...-.+.+|+.+.++.+..+..+.+........-.+.++ .+-+.+-.|++.++..+|.+++++++|.=.-|.|
T Consensus 21 ~~~~~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~ 100 (488)
T KOG2325|consen 21 DSLSPLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGS 100 (488)
T ss_pred CccccccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCC
Confidence 3444445667888888888877777777654433322222233 3445556799999999999999999999999999
Q ss_pred -Cc-------------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHH
Q 013219 89 -RS-------------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVS 124 (447)
Q Consensus 89 -Rr-------------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~ 124 (447)
|| ..+.-.|++..+-.+.|-++.+....+..+|.++
T Consensus 101 ~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~il 180 (488)
T KOG2325|consen 101 VKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIIL 180 (488)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHH
Confidence 55 0112246678788888999999888888888888
Q ss_pred HHHHHHHHcC--CCC-----------chHHHHhhhHHHHHHHHH-hhcccCChH
Q 013219 125 EAIGAWIIMP--RLD-----------WRWLLGLSSIPSFILLAF-LGFQPESPR 164 (447)
Q Consensus 125 ~~~~~~~~~~--~~~-----------WR~~~~~~~i~~~i~~~~-~~~lpESP~ 164 (447)
++.+...+.+ ..| +-.+-+++++..++..+. .+++.|.+|
T Consensus 181 Gp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~ 234 (488)
T KOG2325|consen 181 GPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYR 234 (488)
T ss_pred hHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeeccc
Confidence 8777655421 112 445667777766665443 445666554
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0005 Score=68.18 Aligned_cols=137 Identities=18% Similarity=0.131 Sum_probs=73.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHH---Hhh---hhhHHHHHH--HHHHHHHhhhhhhhH
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLV---TYQ---SNILTTGLL--FGARMCVMGAFTVSL 365 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~---~~~---~~~~~~~~~--~~~~~~~~~~~~~~~ 365 (447)
....+..+...++..+.|+++||+|||+.++.+..+..+...... ... ........+ +...++.....+...
T Consensus 42 ~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 121 (396)
T TIGR00882 42 IVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIE 121 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence 344556777888889999999999999988765544333222111 110 011111111 111111111122233
Q ss_pred hhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 366 IYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 366 ~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.+..|.-+ .++...|.....+.++..++|.+.+.+.+ .++...+++.+.+.++..++.+...||.
T Consensus 122 ~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (396)
T TIGR00882 122 AYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKA 186 (396)
T ss_pred HHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33344322 23345677777778888888888765544 3455556666666666655555555554
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00015 Score=71.62 Aligned_cols=125 Identities=20% Similarity=0.199 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHhh--hhh-HHHHHHHHHHHHHhhhh-hhhHhhccccCCc--ch
Q 013219 304 IPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ--SNI-LTTGLLFGARMCVMGAF-TVSLIYAAEIYPT--SV 376 (447)
Q Consensus 304 i~g~~~~~~l~dr~-GRr~~l~~~~~~~~~~~~~l~~~~--~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~ElfP~--~~ 376 (447)
-...+++||++||+ |+|+.+..+.+...+--+.+.... ... +...+.++. +-.|.+ +-...+.+|+||. ..
T Consensus 75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~--iG~Gl~K~NiS~llg~ly~~~Dpr 152 (498)
T COG3104 75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII--VGTGLFKPNISSLLGELYPKDDPR 152 (498)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH--hccccccccHHHHHHHhcCCCCcc
Confidence 34668999999996 999998887776555444444432 111 111111111 112222 2356788899984 33
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
|..+.++.+...++|++++|.+.+++-+..+.+..|-..+.-..++.+..++..
T Consensus 153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 899999999999999999999999887776655545555555555555554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.7e-07 Score=92.21 Aligned_cols=104 Identities=22% Similarity=0.196 Sum_probs=69.7
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.....++.++|.++++++.||+|||+.+..+..+..+..++..+.. +.....+.-+...+...+......++..|.-
T Consensus 52 ~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~ 131 (451)
T PF00083_consen 52 TSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIA 131 (451)
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3455678889999999999999999988887776555544444433 2222111112222233334456789999999
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
|++.|++..++......+|..++..+.
T Consensus 132 ~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 132 PPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999988888777666666655443
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=72.42 Aligned_cols=133 Identities=17% Similarity=0.190 Sum_probs=96.3
Q ss_pred HHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--c--------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--G-------------- 91 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--~-------------- 91 (447)
.+++.....|++.. .+++......++++++..+...+.-+..+.+.+|++++|++.||+|-| .
T Consensus 286 fLia~~l~~dg~~t-i~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~ 364 (477)
T PF11700_consen 286 FLIAYFLYSDGVNT-IISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPL 364 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 34444445577653 445555555678999999999899999999999999999999999999 1
Q ss_pred ----------------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCC-
Q 013219 92 ----------------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRL- 136 (447)
Q Consensus 92 ----------------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~- 136 (447)
+..-++++|..|+.+.+...+++.+.--....+++++...+....
T Consensus 365 ~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 365 YGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 111234579999999999999999998888888887655543323
Q ss_pred CchHHHHhhhHHHHHHHHHhhcccC
Q 013219 137 DWRWLLGLSSIPSFILLAFLGFQPE 161 (447)
Q Consensus 137 ~WR~~~~~~~i~~~i~~~~~~~lpE 161 (447)
+=|..+....+.-++-++.++++++
T Consensus 445 ~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 445 SQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred CchhHHHHHHHHHHHHHHHHhhccc
Confidence 4677776665555555555555543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00096 Score=61.19 Aligned_cols=105 Identities=18% Similarity=0.073 Sum_probs=64.1
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--hh---hhHHHHHHHHHHHHH--hhhhhhhHhhcccc
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--QS---NILTTGLLFGARMCV--MGAFTVSLIYAAEI 371 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~El 371 (447)
.+++...| ++.|.+.|+.|.+..+.++.+...+....+... .. ......+++...... ............+.
T Consensus 46 ~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~N 124 (250)
T PF06813_consen 46 GDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRN 124 (250)
T ss_pred HHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHh
Confidence 35555544 788999999999999888777655544333321 11 111122222221111 11223344556699
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
||. .|++++|+.-....+++.+-..+...+..+
T Consensus 125 FP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 125 FPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred Ccc-ccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 996 699999999999888887777776544443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00096 Score=66.95 Aligned_cols=138 Identities=13% Similarity=0.101 Sum_probs=77.2
Q ss_pred HHHHhhhhhHHHHHHHHHhh----hChhHH-HHHHHHHHHHHHHHHHHhhh--hh--HHHHHHHHHHH-HHhhhh-hhhH
Q 013219 297 FITSLAEIPGLLLAAILVDT----AGRKLS-ITIMFTLSCLFLLPLVTYQS--NI--LTTGLLFGARM-CVMGAF-TVSL 365 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr----~GRr~~-l~~~~~~~~~~~~~l~~~~~--~~--~~~~~~~~~~~-~~~~~~-~~~~ 365 (447)
.+..+...+...+.|+++|| +|||+. ++.+.....+..+.+....+ .. .....+....+ ...... ....
T Consensus 42 ~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (437)
T TIGR00792 42 LVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYW 121 (437)
T ss_pred HHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHh
Confidence 34455667778889999997 687654 44555544444433332211 10 11111111111 111111 2346
Q ss_pred hhccccC-CcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 366 IYAAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVAN-------CHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 366 ~~~~Elf-P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
++.+|+. +.+.|++..++.+..+.+++.+++.+.+.+... .++...+.+.+++.+++.+...+..+|.+
T Consensus 122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 7788987 468899999998888888877776655444321 12233455666666666666666667764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.002 Score=61.43 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=52.8
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS 90 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr 90 (447)
.|.++|..-+..-.++...|..+- .+..+-+ ++++.++.|.+.+-..-+...++-+.+.|.++||+|||
T Consensus 31 ~f~~Fqr~yl~vY~La~~aDWLQG---pY~Y~LY-~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk 99 (354)
T PF05631_consen 31 AFRRFQRKYLLVYLLAMAADWLQG---PYLYALY-ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRK 99 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---chhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 477888777776666666666542 2222223 57899999999998888888899999999999999999
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0019 Score=63.69 Aligned_cols=119 Identities=12% Similarity=0.105 Sum_probs=67.0
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHH-HHHHHHH-HhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSC-LFLLPLV-TYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~-~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
+..+...++..+.+.++||.|||.........+. ++.+.+. ..++.+...+.......+.....+....+..| + .+
T Consensus 47 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~-~-~~ 124 (382)
T TIGR00902 47 AALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT-W-QK 124 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH-H-HH
Confidence 4455667778889999999998654432222211 1211111 11222211111111111222223444555544 2 56
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHH
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVV 418 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 418 (447)
.|++..|.....+.++..++|.+.+.+.+..++...+...+..
T Consensus 125 ~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~ 167 (382)
T TIGR00902 125 QFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG 167 (382)
T ss_pred HcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 7899999999999999999999888887766655555544433
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0032 Score=62.10 Aligned_cols=136 Identities=15% Similarity=0.046 Sum_probs=72.3
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHH-HHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMF-TLSCLFLLPLVTY-QSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~-~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
..+..+...++.++.+.++||+|||....-.. +.+.......... ++.+...+..+....+.....+....+..+.
T Consensus 45 ~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~-- 122 (382)
T PRK11128 45 LGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW-- 122 (382)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--
Confidence 34445666778888999999999953221111 1111111111111 2222211211212222222233344444443
Q ss_pred cchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 374 TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 374 ~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
.+-|+++.+.....+.++..++|.+.+++.+..++...++..+...++..+. .+..||.+
T Consensus 123 ~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~ 182 (382)
T PRK11128 123 QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTIM 182 (382)
T ss_pred HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCCC
Confidence 3457888888898999999999999988877666655565555444444333 33446653
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0043 Score=59.89 Aligned_cols=106 Identities=17% Similarity=0.049 Sum_probs=70.8
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcc
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ---SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTS 375 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~ 375 (447)
...+.....+.++++++|+|+|+.++.++.++.+...+..-.. +.....+.++.......-.-+....+++.+.|.+
T Consensus 57 ff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~ 136 (422)
T COG0738 57 FFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE 136 (422)
T ss_pred HHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence 3445566778899999999999999988887766654443211 1111111112211111111123466888899999
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
..+.-.++...++.+|++++|.+..+++.
T Consensus 137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 137 SAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888999999999999999998877655
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0045 Score=61.21 Aligned_cols=128 Identities=19% Similarity=0.089 Sum_probs=73.6
Q ss_pred HHHHHHHHHhhhChhHHHHHHHHHH-HHHHHHHHH---hhh-hhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhH
Q 013219 306 GLLLAAILVDTAGRKLSITIMFTLS-CLFLLPLVT---YQS-NILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTG 380 (447)
Q Consensus 306 g~~~~~~l~dr~GRr~~l~~~~~~~-~~~~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~ 380 (447)
+.++..+..||.|||+..++..... ......+.. ... ..+.....+...++..........+..|..+.+.++..
T Consensus 55 ~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~ 134 (390)
T TIGR02718 55 APLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKG 134 (390)
T ss_pred HHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHH
Confidence 3344455677889888865544322 212222221 111 11111111122222222233456678898999888888
Q ss_pred hhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 381 AGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 381 ~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.+.......++..+++....++.+..++..+|++.+.+.++..+..++++||.
T Consensus 135 ~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~ 187 (390)
T TIGR02718 135 NAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRA 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 87777777788888887766666666666677777777666666665655543
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=66.43 Aligned_cols=132 Identities=18% Similarity=0.049 Sum_probs=93.4
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
...+.+++.+.++++.||+|-|+.+..+.+++++..+.. ....+.....++=+...++....++....+.+.-.|.+-
T Consensus 82 ~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E 161 (466)
T KOG2532|consen 82 FFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE 161 (466)
T ss_pred HHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH
Confidence 355678888999999999999998888777666554332 222222222222222333333456778889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHHHHHhcc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVAN-CHQMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
|++..++..+...++.+++-.+.+++-+. .|+...|.++++++++..++.+++.
T Consensus 162 rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~ 216 (466)
T KOG2532|consen 162 RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFY 216 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999988887788877776 6666778888888777655554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.003 Score=64.16 Aligned_cols=132 Identities=15% Similarity=0.115 Sum_probs=73.5
Q ss_pred HhhhhhHHHHHHHHHhhhC-----hhHHHHHHHHHHH-HHHHHHHHhhhh-hHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 300 SLAEIPGLLLAAILVDTAG-----RKLSITIMFTLSC-LFLLPLVTYQSN-ILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~G-----Rr~~l~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.+...+- .+.+.++||++ ||+.++.+.+.++ .....+....+. .....+++...++........-.+..|..
T Consensus 71 ~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~ 149 (468)
T TIGR00788 71 SLGWALK-PFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERI 149 (468)
T ss_pred HHHHHHH-HHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Confidence 3444444 44999999997 6665555554442 222222221221 12222233333333333456788999999
Q ss_pred CcchhhhHh---hHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccccc
Q 013219 373 PTSVRSTGA---GAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETK 434 (447)
Q Consensus 373 P~~~R~~~~---g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtk 434 (447)
+ +.++.+. ++.+....+|..+++.+.+++.+..++...+++.+...++. .+..++.||.+
T Consensus 150 ~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 150 R-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred h-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 8 5554443 34444444788888888887776655555566666665555 34445567865
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0009 Score=68.30 Aligned_cols=130 Identities=15% Similarity=0.065 Sum_probs=89.8
Q ss_pred HhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH--HHhhhhhhhHhhccccCCcchh
Q 013219 300 SLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARM--CVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 300 ~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ElfP~~~R 377 (447)
..+......+.+.+.||+|.|...+.+...+...+++-.+..+.+ ...+.+.... +....+...-.+++ .|..+.|
T Consensus 91 ~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~-~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR 168 (509)
T KOG2504|consen 91 LGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW-QLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKR 168 (509)
T ss_pred HHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhhccchhhhcchhhhhh-hHhHHHH
Confidence 344455567889999999999998888877776665544443322 1222222111 11111222233444 5556679
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
+.++|++..-..++.++-|.+..++++..++.++.++++.+.+-++++...+.|
T Consensus 169 ~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 169 ALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999998888888888888889888888888888877776
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00069 Score=65.65 Aligned_cols=132 Identities=18% Similarity=0.127 Sum_probs=96.5
Q ss_pred HHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------
Q 013219 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------ 90 (447)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------ 90 (447)
+..-....|+.+. ++++..---..++|++..|..++.-...+.+++|++++|+|.||+|-|
T Consensus 258 LiA~~~~~DGv~t-il~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~ 336 (438)
T COG2270 258 LIARFFYIDGVNT-ILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI 336 (438)
T ss_pred HHHHHHHHhhHHH-HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH
Confidence 3334455677753 334443334458999999999999999999999999999999999999
Q ss_pred ----------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC-CCCchHHHHhhhH
Q 013219 91 ----------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP-RLDWRWLLGLSSI 147 (447)
Q Consensus 91 ----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~-~~~WR~~~~~~~i 147 (447)
....-+|+++..|+++-|+..++++..--.+.++++.+...+.. ..+=|.-+..-.+
T Consensus 337 ~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 337 FLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 12334578899999999999999999998888888776554432 2346766665555
Q ss_pred HHHHHHHHhhcccC
Q 013219 148 PSFILLAFLGFQPE 161 (447)
Q Consensus 148 ~~~i~~~~~~~lpE 161 (447)
...+-++..+.+|+
T Consensus 417 ll~iGl~~L~~v~~ 430 (438)
T COG2270 417 LLLIGLLLLLRVKV 430 (438)
T ss_pred HHHhhHhhEEeecC
Confidence 55555555666655
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00071 Score=64.30 Aligned_cols=89 Identities=18% Similarity=0.117 Sum_probs=63.6
Q ss_pred HHHhHhhhHHHHhhhhhCCc----------------------------------------chhhhhhhhcccCCCCchhH
Q 013219 71 AGLVVGAYAWGLVADNYGRS----------------------------------------GHVFLSWFLEFVPPSNRGMW 110 (447)
Q Consensus 71 ~G~~iG~l~~G~l~Dr~GRr----------------------------------------~~~~~~~~~E~~p~~~Rg~~ 110 (447)
+...-|.++.+.+.||+||| ..++++|.-|+.|.+.|++.
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 34567999999999999999 12334566799999999999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcccC
Q 013219 111 MVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 161 (447)
Q Consensus 111 ~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~lpE 161 (447)
.+.-....-+|.+++++++.- ....=-.+..+-+...++..+...++|-
T Consensus 472 vGtcSsmaRIggI~~p~iA~~--~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIAMR--AELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhhhHHhhhhhhhhHHHHH--hccceeehHHHHHHHHHHHHHHheeeee
Confidence 999999999999999988832 2233333444444444444455555553
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.001 Score=60.96 Aligned_cols=131 Identities=15% Similarity=0.102 Sum_probs=88.1
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc-------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG------- 91 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~------- 91 (447)
|.+--|.+++.| +.+-.-.+.. ++...--++++|++|+.+.+.+.|....=.++.+.++|.+.|++||+.
T Consensus 262 f~ppfw~~~iic-v~yyva~fPF--i~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~ 338 (459)
T KOG4686|consen 262 FYPPFWVLVIIC-VLYYVAWFPF--ITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASAC 338 (459)
T ss_pred cCccHHHHHHHH-HHHHHHHHHH--hhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHH
Confidence 555556655544 2222211211 122233467889999999999999988888899999999999999990
Q ss_pred ----------------------------hh----hhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCC--
Q 013219 92 ----------------------------HV----FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLD-- 137 (447)
Q Consensus 92 ----------------------------~~----~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~-- 137 (447)
++ ....+.-..|.++-|+.-++.|...++|-.+.++++..+.++.+
T Consensus 339 ~~tl~~H~~l~Ft~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y 418 (459)
T KOG4686|consen 339 ILTLLGHSGLFFTFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY 418 (459)
T ss_pred HHHHHHhhhHHhhhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence 00 11124577888999999999999999998888888777655443
Q ss_pred -chHHHHhh-hHHHHHH
Q 013219 138 -WRWLLGLS-SIPSFIL 152 (447)
Q Consensus 138 -WR~~~~~~-~i~~~i~ 152 (447)
|--.|.+. ...++..
T Consensus 419 ~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 419 DNLEAFFLIIGLMALTS 435 (459)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 44444443 3334433
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00011 Score=71.63 Aligned_cols=143 Identities=13% Similarity=0.069 Sum_probs=95.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhH--------H-HHHHHHHHhHhhhHHHHhhhhhCCcch
Q 013219 22 YQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESL--------I-TTSVFAGLVVGAYAWGLVADNYGRSGH 92 (447)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------i-~s~~~~G~~iG~l~~G~l~Dr~GRr~~ 92 (447)
+|-+.++..+..|+.........+.-+..+-+.++..+.+... . .-+...+++.|..+...+.|++|||..
T Consensus 301 ~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i 380 (538)
T KOG0252|consen 301 WHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI 380 (538)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH
Confidence 3546666666777765554444444444454544444333222 1 122334566678888899999999900
Q ss_pred --------------h-------------------------------hhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHH
Q 013219 93 --------------V-------------------------------FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI 127 (447)
Q Consensus 93 --------------~-------------------------------~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~ 127 (447)
+ ...+-+|.+|.+.||+.-++.....-.|.++++.
T Consensus 381 q~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~ 460 (538)
T KOG0252|consen 381 QLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF 460 (538)
T ss_pred HHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence 0 0112359999999999999999999999888765
Q ss_pred HHHHHcC-----CCCchHHHHhhhHHHHHHHHHhhcccCChH
Q 013219 128 GAWIIMP-----RLDWRWLLGLSSIPSFILLAFLGFQPESPR 164 (447)
Q Consensus 128 ~~~~~~~-----~~~WR~~~~~~~i~~~i~~~~~~~lpESP~ 164 (447)
....... .-+-|..+++.+...++..+..+++|||.+
T Consensus 461 ~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~ 502 (538)
T KOG0252|consen 461 GFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETKG 502 (538)
T ss_pred HhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence 5444433 457899999988888888888889999865
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.18 Score=50.46 Aligned_cols=106 Identities=18% Similarity=0.085 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhh---hChhHHHHHHHHHHHHHHHHHHH--h-hh---------------hhHHHHHHHH
Q 013219 294 IDEFITSLAEIPGLLLAAILVDT---AGRKLSITIMFTLSCLFLLPLVT--Y-QS---------------NILTTGLLFG 352 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr---~GRr~~l~~~~~~~~~~~~~l~~--~-~~---------------~~~~~~~~~~ 352 (447)
...+.++++++.+.+..+.+.+| +||++...++..+..+..++... . +. .....++-+.
T Consensus 283 i~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l 362 (461)
T KOG3098|consen 283 IYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFL 362 (461)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHH
Confidence 34566677888888888888876 58888777666654444333221 1 00 1111111111
Q ss_pred HHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 353 ARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 353 ~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
..+.=.-..+..+.+.+.++ ++-|+++.++.-.-..+.+-++-+..+
T Consensus 363 ~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 363 LGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred HhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11111112235677888888 566899998888877776665555554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0027 Score=60.72 Aligned_cols=106 Identities=14% Similarity=0.105 Sum_probs=70.2
Q ss_pred HHHHHHHhhccccc--ccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------------------
Q 013219 39 MEIMILSFVGPTVK--SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------------- 90 (447)
Q Consensus 39 ~~~~~~~~~~~~~~--~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------------- 90 (447)
.|....++....+. ..+++++++.++..+.+..+..+|.++.+++.||+|+|
T Consensus 155 ~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~ 234 (310)
T TIGR01272 155 AEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM 234 (310)
T ss_pred HHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 45554444433333 23689999999999999999999999999999999987
Q ss_pred -------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhh
Q 013219 91 -------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSS 146 (447)
Q Consensus 91 -------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~ 146 (447)
.|...+...|..|++ .+...++. .+..+|..+.+.+...+.+..+-+..+++..
T Consensus 235 ~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 235 WFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 111122334666654 34555554 4555777777765555555567777776443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0021 Score=64.55 Aligned_cols=129 Identities=18% Similarity=0.069 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHh----hhChhHHHH-HHHHHHHHHHHHHHHh-h---hhh--HHHHHH--HHHHHHHhhhhhhhHhhccc
Q 013219 304 IPGLLLAAILVD----TAGRKLSIT-IMFTLSCLFLLPLVTY-Q---SNI--LTTGLL--FGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 304 i~g~~~~~~l~d----r~GRr~~l~-~~~~~~~~~~~~l~~~-~---~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~E 370 (447)
.+...+.|.++| |+|||+..+ ++.+..++....+... . +.. ....++ +....+.........++.+|
T Consensus 51 ai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~ 130 (428)
T PF13347_consen 51 AITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE 130 (428)
T ss_pred hhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc
Confidence 333457888999 799887654 5656555555444432 1 111 111111 11111111122235789999
Q ss_pred cCC-cchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 371 IYP-TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-------QMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 371 lfP-~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
+.+ .+.|.+..+....++.+++.+...+.+.+.+..+ .....++++++.+++.++..+..+|
T Consensus 131 lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 131 LTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 998 4789999999999988888766666655543222 1233445666667777777777777
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.007 Score=61.01 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=69.9
Q ss_pred HHhhhhhHHHHHHHHHhh----hChhHHH-HHHHHHHHHHHHHHHHhh----hhhHHHHHHH--HHHHHHhhhhhhhHhh
Q 013219 299 TSLAEIPGLLLAAILVDT----AGRKLSI-TIMFTLSCLFLLPLVTYQ----SNILTTGLLF--GARMCVMGAFTVSLIY 367 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr----~GRr~~l-~~~~~~~~~~~~~l~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~ 367 (447)
..+...+...+.|+++|| +|||+.. +.+.+..++....+.... ........+. ....+.........++
T Consensus 54 ~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al 133 (444)
T PRK09669 54 VRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAM 133 (444)
T ss_pred HHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 344455566788999998 7876554 455444444433322211 1111111111 1111111122234678
Q ss_pred ccccC-CcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 368 AAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-------QMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 368 ~~Elf-P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
.+|+. +.+.|++..+.....+.+++.+++.+...+....+ ....+.+++++++++.+..++..+|.
T Consensus 134 ~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 134 PGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence 89988 45789998888888888887777655433332211 11234445555555544444444443
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00051 Score=51.28 Aligned_cols=51 Identities=14% Similarity=0.226 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhC
Q 013219 38 AMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYG 88 (447)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~G 88 (447)
+..|+..+...|.+++|.++|.++.|++.|+.++||++|++...++.++..
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~ 55 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSR 55 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 466888899999999999999999999999999999999999999988743
|
Note that many members are hypothetical proteins. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.18 Score=48.32 Aligned_cols=138 Identities=15% Similarity=0.064 Sum_probs=70.7
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhh-----hHhhccccC
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTV-----SLIYAAEIY 372 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Elf 372 (447)
...+...+...+.|.+.||+|||+.-+...+.-....+.........+...-+.... ...-.++. ..-....=|
T Consensus 77 ~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~~~~~~L~~GRvlgGi-aTSLLfS~FEsW~V~Eh~~~g~ 155 (354)
T PF05631_consen 77 AGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHSSNYPVLLLGRVLGGI-ATSLLFSAFESWMVHEHNKRGF 155 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCC
Confidence 334445566678899999999998765544443333332222111111111111111 11111111 112233457
Q ss_pred CcchhhhHhhHHHH-HHhHhHhHHHHHHHHHHhhc--hhhHHHHHHHHHHHHHHHHHHhccccccCC
Q 013219 373 PTSVRSTGAGAANA-MGRIGGMVCPLVAVALVANC--HQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436 (447)
Q Consensus 373 P~~~R~~~~g~~~~-~~~i~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~ 436 (447)
|.+-.+...+...+ .+.+.++.+..+...+.+.. ++..+|..-..+.+++.+++....+|..|.
T Consensus 156 ~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 156 PQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred ChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 77777777775553 33344444444444444433 335677777777777777777666787665
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.067 Score=54.25 Aligned_cols=130 Identities=12% Similarity=-0.012 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhh----hChhHHHH-HHHHHHHHHHHHHHHhh--hhh--HHHHHHHH--HHHHHhhhhhhhHhhccccC
Q 013219 304 IPGLLLAAILVDT----AGRKLSIT-IMFTLSCLFLLPLVTYQ--SNI--LTTGLLFG--ARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 304 i~g~~~~~~l~dr----~GRr~~l~-~~~~~~~~~~~~l~~~~--~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~Elf 372 (447)
.+.-.+-|.++|| +||||..+ .+.+..++.+..+.... +.. .....+.. ...+........+++.+|+-
T Consensus 59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt 138 (460)
T PRK11462 59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVIT 138 (460)
T ss_pred HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhc
Confidence 4455677999996 68876654 45455554444433211 111 11111111 11111111223467899998
Q ss_pred C-cchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-------hhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 373 P-TSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-------QMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 373 P-~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+ .+.|++..++-...+.+++.+++.+...+....+ ......+++++.+++..+.+...+|.
T Consensus 139 ~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~ 207 (460)
T PRK11462 139 NDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER 207 (460)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence 8 7999999999999999888787766544433222 11223345555555544444444453
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0094 Score=60.49 Aligned_cols=136 Identities=15% Similarity=0.077 Sum_probs=91.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+..++.+++.+.++.+.||++-.+.+..+.+.-+++.+.-...++.....+.-+...++-.+.++..-.+.+--|..+-
T Consensus 88 t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e 167 (495)
T KOG2533|consen 88 TVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE 167 (495)
T ss_pred HHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh
Confidence 34567788999999999999995555544444333333221222222222232233334455677888889999999999
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHHHHHHh------hchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVAVALVA------NCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
|++-+|+-++.+.+++++++.+...+.+ ..++.+.|++-+++.++..+++++++|+
T Consensus 168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 9999999999999999999888765432 1233456777777777777777777664
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.044 Score=55.78 Aligned_cols=101 Identities=10% Similarity=-0.041 Sum_probs=56.4
Q ss_pred HHhhhhhHHHHHHHHHh----hhChhH-HHHHHHHHHHHHHHHHHHhh--hhh--HHHHHHHHH--HHHHhhhhhhhHhh
Q 013219 299 TSLAEIPGLLLAAILVD----TAGRKL-SITIMFTLSCLFLLPLVTYQ--SNI--LTTGLLFGA--RMCVMGAFTVSLIY 367 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~d----r~GRr~-~l~~~~~~~~~~~~~l~~~~--~~~--~~~~~~~~~--~~~~~~~~~~~~~~ 367 (447)
..+.-.+...+.|.++| |+|||+ .++.+...+++.+..+.... +.. ....++... ..+.........++
T Consensus 51 ~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al 130 (473)
T PRK10429 51 ARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSL 130 (473)
T ss_pred HHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhh
Confidence 34444556677899999 569855 45556655555544433211 111 111111111 11111122234678
Q ss_pred ccccC-CcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 368 AAEIY-PTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 368 ~~Elf-P~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
.+|+- ..+.|.+..+....++.+++++.+.+.
T Consensus 131 ~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 131 VPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred hHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998 489999999887777777766665544
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0025 Score=47.00 Aligned_cols=44 Identities=18% Similarity=0.352 Sum_probs=39.0
Q ss_pred ccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch
Q 013219 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH 92 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~ 92 (447)
|..-++.++|+.|.|.+.++..+-.++++.++|.++||+||+..
T Consensus 24 ~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~ 67 (77)
T PF12832_consen 24 PLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKV 67 (77)
T ss_pred hHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHH
Confidence 33446789999999999999999999999999999999999843
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0061 Score=60.01 Aligned_cols=148 Identities=7% Similarity=0.057 Sum_probs=104.3
Q ss_pred cccHHHHHHhcCCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh
Q 013219 7 VYTVDEALTHVGFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADN 86 (447)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr 86 (447)
+.+..+.++-.+..++...++..++...+.+.+|.+.-+|-.... ++-+.++...|.+.|..-+.-.+.-.+...+.+|
T Consensus 207 ~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f-~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~r 285 (412)
T PF01306_consen 207 KVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF-QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINR 285 (412)
T ss_dssp ---HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677788888888888888888888899999987544432222 1112233456888888888888999999999999
Q ss_pred hCCcc----------------------------------------hhhhhhhhcccCCCCchhHHHH-HHHHHhhhhHHH
Q 013219 87 YGRSG----------------------------------------HVFLSWFLEFVPPSNRGMWMVI-FSSFWTIGSVSE 125 (447)
Q Consensus 87 ~GRr~----------------------------------------~~~~~~~~E~~p~~~Rg~~~~~-~~~~~~iG~l~~ 125 (447)
+|-|. ....-|+.+..|+|..++.-.+ .+...++|..+.
T Consensus 286 ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 286 IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99990 1112367899999998887776 578888888887
Q ss_pred HHHHHHHcCCCCchHHHHhhhHHHHHHHHH
Q 013219 126 AIGAWIIMPRLDWRWLLGLSSIPSFILLAF 155 (447)
Q Consensus 126 ~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~ 155 (447)
+.++..+.++.|.|..+++.+...+...+.
T Consensus 366 s~~~G~lyd~~G~~~tylimg~iv~~~~li 395 (412)
T PF01306_consen 366 SPLAGYLYDRIGFQHTYLIMGLIVLPFTLI 395 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHhhHhhcCcHHHHHHHHHHHHHHHHH
Confidence 777766666778888887766665554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.078 Score=55.95 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHHHH---HHHHhhhhhhhHhhccccCCc
Q 013219 304 IPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQS-----NILTTGLLFGA---RMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 304 i~g~~~~~~l~dr-~GRr~~l~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~---~~~~~~~~~~~~~~~~ElfP~ 374 (447)
-+..++++++.|+ +||++.+..+.++..+...++..... .......+++. ..+..+.-+...+..+|.|+.
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 4456788999997 59999887766654444333332110 00011111111 111111113456677788874
Q ss_pred c---hhhhHhhHHHHHHhHhHhHHHHHHHHHHhh
Q 013219 375 S---VRSTGAGAANAMGRIGGMVCPLVAVALVAN 405 (447)
Q Consensus 375 ~---~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~ 405 (447)
+ .|.....+.+...++++++++.+.+++.+.
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~ 150 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGD 150 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 578889999999999999999999877543
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=57.23 Aligned_cols=80 Identities=15% Similarity=0.055 Sum_probs=53.3
Q ss_pred cccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch---------------------------------------
Q 013219 52 KSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH--------------------------------------- 92 (447)
Q Consensus 52 ~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~--------------------------------------- 92 (447)
+..++.++...++......++.++++++.+++.||+|+|..
T Consensus 256 ~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 256 RYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGV 335 (448)
T ss_pred eeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 34466655544444455567888999999999999999810
Q ss_pred ---hhhhhhhcccC-------CCCchhHHHHHHHHHhhhhHHHHHHHHH
Q 013219 93 ---VFLSWFLEFVP-------PSNRGMWMVIFSSFWTIGSVSEAIGAWI 131 (447)
Q Consensus 93 ---~~~~~~~E~~p-------~~~Rg~~~~~~~~~~~iG~l~~~~~~~~ 131 (447)
...+...|..| +|.+|...+..+....+|..++..+...
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112235544 3456999999999999998887655433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.011 Score=54.91 Aligned_cols=113 Identities=23% Similarity=0.349 Sum_probs=77.3
Q ss_pred HHHHHHHhhcccccccccCCC--cchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------------------
Q 013219 39 MEIMILSFVGPTVKSEWNLSS--TEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------------- 90 (447)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~l~~--~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------------- 90 (447)
.+........+....+++.+. .+.++..+...++..+++++.|.++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (338)
T COG0477 16 LDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA 95 (338)
T ss_pred HhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 444444455555556665554 4789999999999999999999999999999
Q ss_pred ----------------chhhhhhhhcccCC-CCchhHHHHHHH-HHhhhhHHHHHHHHHHc--CCCCchHHHHhhhHHHH
Q 013219 91 ----------------GHVFLSWFLEFVPP-SNRGMWMVIFSS-FWTIGSVSEAIGAWIIM--PRLDWRWLLGLSSIPSF 150 (447)
Q Consensus 91 ----------------~~~~~~~~~E~~p~-~~Rg~~~~~~~~-~~~iG~l~~~~~~~~~~--~~~~WR~~~~~~~i~~~ 150 (447)
.+....++.|+.|+ +.|+...+.... ...+|.++++.++..+. ...+||..+.+..+...
T Consensus 96 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
T COG0477 96 LLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGL 175 (338)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 01112345688888 678888887777 57777777665544332 23579986665555444
Q ss_pred H
Q 013219 151 I 151 (447)
Q Consensus 151 i 151 (447)
.
T Consensus 176 ~ 176 (338)
T COG0477 176 L 176 (338)
T ss_pred H
Confidence 3
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.14 Score=50.48 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=65.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH--HHhh---hhhHHHHHHHHHHHHHh-hhh--hhhHh
Q 013219 295 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL--VTYQ---SNILTTGLLFGARMCVM-GAF--TVSLI 366 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l--~~~~---~~~~~~~~~~~~~~~~~-~~~--~~~~~ 366 (447)
...+..+..++..+.+.|+.||+|-|...+++....++-..+= .... +.....+...+...+.. ..+ .++.=
T Consensus 84 lsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPsk 163 (480)
T KOG2563|consen 84 LSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSK 163 (480)
T ss_pred HHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccH
Confidence 3456688889999999999999999998877766544433221 1111 11111122212111111 111 12233
Q ss_pred hccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 367 YAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 367 ~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
+.+--||.+.|+++..++.+.+-+|..++..+.|.+..
T Consensus 164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 44556999999999999988887777666655554433
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.69 Score=46.78 Aligned_cols=41 Identities=5% Similarity=-0.138 Sum_probs=37.6
Q ss_pred hhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 363 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 363 ~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
+.|.+.+|++..+.-.+-.++....++++.++++.+..++.
T Consensus 149 lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 149 LFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999998876654
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.29 E-value=1.5 Score=44.40 Aligned_cols=105 Identities=8% Similarity=0.003 Sum_probs=69.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCC-----CcchhHHHHHHHHHHhHh-hhHHHHhhhhhCCc-------
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLS-----STEESLITTSVFAGLVVG-AYAWGLVADNYGRS------- 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~i~s~~~~G~~iG-~l~~G~l~Dr~GRr------- 90 (447)
++.++.+++.+++-.+.... ...+++.+.++ .+...++-+...+-..+. ..+.+.+++|++|+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~i----LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~ 81 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTI----LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI 81 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence 44444444444443333332 24455555542 246778888777766666 88899999999999
Q ss_pred -----------------------------------------------------------------chhhhhhhhcccCCC
Q 013219 91 -----------------------------------------------------------------GHVFLSWFLEFVPPS 105 (447)
Q Consensus 91 -----------------------------------------------------------------~~~~~~~~~E~~p~~ 105 (447)
+.+...+..|.+.++
T Consensus 82 ~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~ 161 (472)
T TIGR00769 82 SPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTID 161 (472)
T ss_pred HHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 001223456999999
Q ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHH
Q 013219 106 NRGMWMVIFSSFWTIGSVSEAIGAWII 132 (447)
Q Consensus 106 ~Rg~~~~~~~~~~~iG~l~~~~~~~~~ 132 (447)
+-.+..+++..+.++|.++++.+...+
T Consensus 162 qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 162 EAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998887665543
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.66 Score=46.08 Aligned_cols=101 Identities=22% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTAG-RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~G-Rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
.....+..+..+++..+.+.++||.+ +|+.+.+..+++++.+.......+.+....+.....++.....+....++-+.
T Consensus 40 G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~ 119 (400)
T PF03825_consen 40 GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSY 119 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33344556778889999999999986 45666565555555444333332222222222222222233334444555554
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHH
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVC 395 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~ 395 (447)
.. -+.+-+|-...+|.+|=+++
T Consensus 120 ~~--~~~~~YG~iRlwGSiGf~~~ 141 (400)
T PF03825_consen 120 LG--DRGKDYGRIRLWGSIGFIVA 141 (400)
T ss_pred cc--cccCCCCcchhhhhHHHHHH
Confidence 44 23445555555555544444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.072 Score=53.52 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=76.9
Q ss_pred HHHHHHHhhh---C-hhHH-HHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHhhhhhhhHhhccccC---Ccc
Q 013219 308 LLAAILVDTA---G-RKLS-ITIMFTLSCLFLLPLVTYQ----SNILTTGLLFGARMCVMGAFTVSLIYAAEIY---PTS 375 (447)
Q Consensus 308 ~~~~~l~dr~---G-Rr~~-l~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf---P~~ 375 (447)
.+.|.++|-+ | ||+. ++++.+++.++.+.+.... +.....++++...++....-.+.-+..+|.- |.+
T Consensus 42 p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 42 PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 5778999986 4 4444 4455555544443333211 1222233333333333333345566667775 555
Q ss_pred hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCC
Q 013219 376 VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQ 436 (447)
Q Consensus 376 ~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~ 436 (447)
|+.-.+.++.+..+|++++..+.+.+.+..+....+.+.+.+..+..+...++.+|.+.+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~ 181 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKVR 181 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcccc
Confidence 777788888888889999888887777765555556666666666666777777774433
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.43 Score=47.88 Aligned_cols=103 Identities=13% Similarity=-0.004 Sum_probs=60.5
Q ss_pred hhHHHHHHHHHhh----hChhHHHH-HHHHHHHHHHHHHHHhh-----hh-hHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 304 IPGLLLAAILVDT----AGRKLSIT-IMFTLSCLFLLPLVTYQ-----SN-ILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 304 i~g~~~~~~l~dr----~GRr~~l~-~~~~~~~~~~~~l~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
.+.-.+-|.++|| +||||..+ .+.+..+++..+..... .. ....+.-.....+.........++++|+-
T Consensus 62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT 141 (467)
T COG2211 62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEIT 141 (467)
T ss_pred HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhc
Confidence 3344567788885 78777654 44444444433333221 11 11111111122222222334568999998
Q ss_pred Cc-chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc
Q 013219 373 PT-SVRSTGAGAANAMGRIGGMVCPLVAVALVANC 406 (447)
Q Consensus 373 P~-~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~ 406 (447)
+. +-|.+-.+.-...+.+++++...+.+.+....
T Consensus 142 ~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~ 176 (467)
T COG2211 142 QDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLF 176 (467)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 84 88999999999999999888888886665543
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.51 Score=45.01 Aligned_cols=73 Identities=18% Similarity=0.179 Sum_probs=51.9
Q ss_pred hhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc--CCCCchHHHHhhhHHHHHHHHHhhcccCChHHH
Q 013219 94 FLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM--PRLDWRWLLGLSSIPSFILLAFLGFQPESPRYL 166 (447)
Q Consensus 94 ~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~--~~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L 166 (447)
..+|+-+..+|+++.+..+..-...-.|...+..++-.+. ...+.+.+-.+...-..+....-+++|--||=+
T Consensus 115 YysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl 189 (433)
T KOG3810|consen 115 YYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSL 189 (433)
T ss_pred hhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhh
Confidence 3456668889999999999988888888887777765543 244677777776666666666667777666544
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.3 Score=35.03 Aligned_cols=102 Identities=14% Similarity=-0.012 Sum_probs=62.0
Q ss_pred HHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcch
Q 013219 297 FITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~ 376 (447)
.+......+++++...+++++|.|+.++++.++-.+............. ...-....+.....|.....+..|.-..+.
T Consensus 44 ai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l-~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 44 AILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTL-YPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 3445556677788899999999999998887765544433222221111 111111222223344555667888888888
Q ss_pred hhhHhhHHHHHHhHhHhHHHHHH
Q 013219 377 RSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 377 R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
|++-.++...+...+.+++..+.
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 88888877777766655555433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=93.80 E-value=3.3 Score=38.00 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=37.6
Q ss_pred CCchhHHHHHHHHHhhhhHHHHHHHHHH-----cCCCCchHHHHhhhHHHHHHHHHhhc
Q 013219 105 SNRGMWMVIFSSFWTIGSVSEAIGAWII-----MPRLDWRWLLGLSSIPSFILLAFLGF 158 (447)
Q Consensus 105 ~~Rg~~~~~~~~~~~iG~l~~~~~~~~~-----~~~~~WR~~~~~~~i~~~i~~~~~~~ 158 (447)
|+|+....+...++++|.+++.+..... .....||+.+.+.++..++.++...+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888899999998765432111 01236999999888877776665544
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.19 Score=50.60 Aligned_cols=129 Identities=14% Similarity=0.111 Sum_probs=93.9
Q ss_pred HHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc------------------
Q 013219 29 YAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------------------ 90 (447)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------------------ 90 (447)
+....|++.+.+...++|.-=- -+|.+..+...|.....-..|-++--++.+.+..++||-
T Consensus 376 ff~~av~mG~g~~lv~tFLfWH-led~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S 454 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWH-LEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS 454 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH
Confidence 3445666666666666665222 255566677778777778888888999999999999987
Q ss_pred ----------------------chhhhhhhhcccCCCCchhHHHHHHH-HHhhhhHHHHHHHHHHcCCCCchHHHHhhhH
Q 013219 91 ----------------------GHVFLSWFLEFVPPSNRGMWMVIFSS-FWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 147 (447)
Q Consensus 91 ----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~-~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i 147 (447)
.....+|++-.+||+.|..+.++.+. +..+|--++++++..+....+=|..|...++
T Consensus 455 ~L~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~gi 534 (618)
T KOG3762|consen 455 YLQNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGI 534 (618)
T ss_pred HhcCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHH
Confidence 12234688899999999999987764 6777777777777776667788888887777
Q ss_pred HHHHHHHHhhc
Q 013219 148 PSFILLAFLGF 158 (447)
Q Consensus 148 ~~~i~~~~~~~ 158 (447)
..++.++.+..
T Consensus 535 Acl~~l~~~~~ 545 (618)
T KOG3762|consen 535 ACLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.65 E-value=1 Score=41.49 Aligned_cols=104 Identities=27% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhHhhccccCCc-c
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQS--NILTTGLLFGARMCVMGAFTVSLIYAAEIYPT-S 375 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~-~ 375 (447)
..+....+.++.+.+.||.|||+.+..+........+......+ .....+..+...+......+....+.+|.+|. +
T Consensus 48 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 127 (338)
T COG0477 48 FFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEAT 127 (338)
T ss_pred HHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchh
Confidence 34455566689999999999997766655431222112222222 11111111111122223345678899999998 6
Q ss_pred hhhhHhhHHHH-HHhHhHhHHHHHHHHH
Q 013219 376 VRSTGAGAANA-MGRIGGMVCPLVAVAL 402 (447)
Q Consensus 376 ~R~~~~g~~~~-~~~i~~~~~~~~~~~l 402 (447)
.|+...+.... ...++..++|.+...+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T COG0477 128 ERGLAVGLVTLGAGALGLALGPLLAGLL 155 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888887777 4556666666444433
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.16 Score=50.04 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=32.1
Q ss_pred HhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhh----hhCCc
Q 013219 45 SFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD----NYGRS 90 (447)
Q Consensus 45 ~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~D----r~GRr 90 (447)
++..|.. .+.+++....+.+=-+..+-+++-+.+.|..+| |||||
T Consensus 53 sy~tPyl-~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR 101 (498)
T KOG0637|consen 53 SYLTPYL-QSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR 101 (498)
T ss_pred ccccHHH-HHcCCCcccccccccccccccceecccccccccccccccccc
Confidence 4454544 566777666666555666667777888999999 78999
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=92.96 E-value=10 Score=38.10 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=25.3
Q ss_pred hhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHH
Q 013219 362 TVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPL 397 (447)
Q Consensus 362 ~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~ 397 (447)
+....+.++..+++.|..+..+.+.+-.+|-.++..
T Consensus 391 s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 391 SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAV 426 (437)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889899888887777776665555544443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=92.59 E-value=0.51 Score=39.97 Aligned_cols=76 Identities=7% Similarity=0.078 Sum_probs=53.3
Q ss_pred cCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcch---------------------------------------hhhh
Q 013219 56 NLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGH---------------------------------------VFLS 96 (447)
Q Consensus 56 ~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~---------------------------------------~~~~ 96 (447)
++++...-.-.++.+....+++++.+.+.+++|.|.. ....
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhH
Confidence 3444454556677777888999999999999999911 1123
Q ss_pred hhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHH
Q 013219 97 WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWI 131 (447)
Q Consensus 97 ~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~ 131 (447)
|+.|.+.++.|++..+++-.....+.+++.++.+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888888888877766666666666655544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.08 E-value=3.2 Score=41.94 Aligned_cols=137 Identities=17% Similarity=0.163 Sum_probs=72.7
Q ss_pred HHHHhhhhhHHHHHHHHHhhhCh-hHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHH-HHhhhhhhhHhhcccc
Q 013219 297 FITSLAEIPGLLLAAILVDTAGR-KLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARM-CVMGAFTVSLIYAAEI 371 (447)
Q Consensus 297 ~i~~~~~i~g~~~~~~l~dr~GR-r~~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~El 371 (447)
....+++.+++++.++-..|.+. |+.++++.+++.+..++. ....+......++.-... +..+..++.-.|.+.-
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~ 157 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADA 157 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhc
Confidence 34577788889999999999884 555555555444433222 221121111111111111 1123345677888886
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHH---HHhh---------ch-hhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVA---LVAN---------CH-QMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~---l~~~---------~~-~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
--.+-|.++++..+...-++.+++|.+-+. +.+. .+ ...+.++.+++.++..+...++..|-
T Consensus 158 s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 158 STVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred cCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 666667777766655444444444433322 2211 01 12356677777777777777776654
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=91.54 E-value=21 Score=37.90 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=32.4
Q ss_pred chhHHHHHHHHHhhhhHHHHHHHHHHcC-------CCCchHHHHhhhHHHHHHHHH
Q 013219 107 RGMWMVIFSSFWTIGSVSEAIGAWIIMP-------RLDWRWLLGLSSIPSFILLAF 155 (447)
Q Consensus 107 Rg~~~~~~~~~~~iG~l~~~~~~~~~~~-------~~~WR~~~~~~~i~~~i~~~~ 155 (447)
|-....++..+.++|.+++..+...+.. +.+|...|.+.++..++.++.
T Consensus 122 ~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 122 RSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 5556667777778888877655544431 246999999887776665443
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=91.51 E-value=15 Score=36.23 Aligned_cols=35 Identities=20% Similarity=0.285 Sum_probs=24.3
Q ss_pred HhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHH
Q 013219 365 LIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVA 399 (447)
Q Consensus 365 ~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~ 399 (447)
+....|-.|.+-|--+.|.....-.+|-.++..+.
T Consensus 357 F~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~ 391 (402)
T PF02487_consen 357 FYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLG 391 (402)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44456667889999999888777666655555443
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=91.11 E-value=20 Score=36.67 Aligned_cols=42 Identities=12% Similarity=-0.034 Sum_probs=37.0
Q ss_pred hhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHh
Q 013219 363 VSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVA 404 (447)
Q Consensus 363 ~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~ 404 (447)
..|.+++|+++.+.--+-+++....++++.+++..+..++.+
T Consensus 164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999988877765544
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.96 E-value=16 Score=35.50 Aligned_cols=126 Identities=15% Similarity=-0.016 Sum_probs=69.3
Q ss_pred HHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchh
Q 013219 298 ITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVR 377 (447)
Q Consensus 298 i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R 377 (447)
+..++.-....++.++.+|+|.++.+..+++..++-..+=... +.......-......+.-...+.....-|-||.++-
T Consensus 55 LPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~ 133 (395)
T COG2807 55 LPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRVG 133 (395)
T ss_pred HHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccchh
Confidence 3344444556788889999998888777665444333221111 111111111111112222334556778899998854
Q ss_pred hhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHH
Q 013219 378 STGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILS 425 (447)
Q Consensus 378 ~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~i~ 425 (447)
..+|+....-.+++.+++-+.+.+.+.. ++.+...+.+..++++.+.
T Consensus 134 -~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~ 181 (395)
T COG2807 134 -LMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLI 181 (395)
T ss_pred -hHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666665555454443 3556667777777776544
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.2 Score=44.61 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=88.6
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-------
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS------- 90 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr------- 90 (447)
++..|-..-+++.+++..+-++....++.....+.+.-|+++.+.|..-+...+.++.|.+++.++.+|+|-.
T Consensus 251 ~w~~Y~~q~vflas~alalLY~TVLsf~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l 330 (432)
T PF06963_consen 251 GWRTYFRQPVFLASFALALLYFTVLSFGGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSL 330 (432)
T ss_pred cHHHHHhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 3555556667788888888888766666555555555699999999999999999999999999999999987
Q ss_pred ------------------ch--hhhh-----------------------hhhcccCCCCchhHHHHHHHHHhhhhHHHHH
Q 013219 91 ------------------GH--VFLS-----------------------WFLEFVPPSNRGMWMVIFSSFWTIGSVSEAI 127 (447)
Q Consensus 91 ------------------~~--~~~~-----------------------~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~ 127 (447)
.+ .... ++-|..|+++||...+.-+...++--++..+
T Consensus 331 ~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 331 WWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11 0000 1239999999999999999888888887776
Q ss_pred HHHHHc
Q 013219 128 GAWIIM 133 (447)
Q Consensus 128 ~~~~~~ 133 (447)
++..+.
T Consensus 411 ~~ii~~ 416 (432)
T PF06963_consen 411 LTIIFP 416 (432)
T ss_pred HHhccC
Confidence 665543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=89.29 E-value=11 Score=37.01 Aligned_cols=107 Identities=15% Similarity=0.172 Sum_probs=74.3
Q ss_pred ccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------------------------------------
Q 013219 49 PTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------------------------------------- 90 (447)
Q Consensus 49 ~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------------------------------------- 90 (447)
|.-.+-|+++..|..-+++....|.++|-...|++..|-.+|
T Consensus 233 Pygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G 312 (403)
T PF03209_consen 233 PYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLG 312 (403)
T ss_pred CchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 444455899999999999999999999999999998853333
Q ss_pred ------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHH--------c--CCCCchHHHHhhhHHHHHHHH
Q 013219 91 ------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII--------M--PRLDWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 91 ------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~--------~--~~~~WR~~~~~~~i~~~i~~~ 154 (447)
..-..+.+.+.+++++-|...+.+...+.+..-++..++..+ . +..+|-..|.+.++..++...
T Consensus 313 ~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ 392 (403)
T PF03209_consen 313 LGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV 392 (403)
T ss_pred HhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence 011122345899999999999888776666554444333321 1 345688888888776666544
Q ss_pred H
Q 013219 155 F 155 (447)
Q Consensus 155 ~ 155 (447)
.
T Consensus 393 l 393 (403)
T PF03209_consen 393 L 393 (403)
T ss_pred H
Confidence 3
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=89.03 E-value=29 Score=35.46 Aligned_cols=111 Identities=9% Similarity=0.038 Sum_probs=69.6
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccC---CCcchhHHHHHHHH-HHhHhhhHHHHhhhhhCCc---
Q 013219 18 GFGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL---SSTEESLITTSVFA-GLVVGAYAWGLVADNYGRS--- 90 (447)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~i~s~~~~-G~~iG~l~~G~l~Dr~GRr--- 90 (447)
+..+.++.-++.+++.+++-.+.....- ++++.+-+ .++....+-....+ +.++-.++...+.++++|.
T Consensus 17 pi~~~E~~k~~~l~~m~f~i~f~y~~lR----~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lF 92 (491)
T PF03219_consen 17 PIHRSELKKFLPLALMFFFILFNYTILR----DLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLF 92 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 5567888888888777777777665443 33332222 22333444443222 4455567788899999988
Q ss_pred ---------------------------------------------------------------------chhhhhhhhcc
Q 013219 91 ---------------------------------------------------------------------GHVFLSWFLEF 101 (447)
Q Consensus 91 ---------------------------------------------------------------------~~~~~~~~~E~ 101 (447)
..+...+..|.
T Consensus 93 y~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~i 172 (491)
T PF03219_consen 93 YIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEI 172 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 01122344688
Q ss_pred cCCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Q 013219 102 VPPSNRGMWMVIFSSFWTIGSVSEAIGAWII 132 (447)
Q Consensus 102 ~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~ 132 (447)
++.++-.+...++..+.++|.++++.+...+
T Consensus 173 tt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 173 TTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888776554443
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.96 E-value=28 Score=35.20 Aligned_cols=36 Identities=8% Similarity=-0.094 Sum_probs=29.6
Q ss_pred hhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc
Q 013219 98 FLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM 133 (447)
Q Consensus 98 ~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~ 133 (447)
..|++..++-.+....++.+.+++.++++.+..++.
T Consensus 173 aNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~ 208 (509)
T COG3202 173 ANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLS 208 (509)
T ss_pred HHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358888888899999999999999888877766653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=88.59 E-value=4.3 Score=29.72 Aligned_cols=37 Identities=22% Similarity=0.132 Sum_probs=28.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHH
Q 013219 292 LYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFT 328 (447)
Q Consensus 292 ~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~ 328 (447)
......+..+..+++..+.+.++||.||++..+....
T Consensus 37 iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 37 IGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 3344555677888999999999999999887665443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=87.77 E-value=34 Score=34.78 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.8
Q ss_pred hhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhH
Q 013219 360 AFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMV 394 (447)
Q Consensus 360 ~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~ 394 (447)
.+....++-+.+--+.+-||-+.+-|..+++||--
T Consensus 422 mFVai~AFharISDP~IGGTYMTLLNTvSNLGGtW 456 (544)
T PF13000_consen 422 MFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTW 456 (544)
T ss_pred HHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCc
Confidence 44456778889999999999999999999997643
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.89 E-value=10 Score=39.15 Aligned_cols=54 Identities=13% Similarity=0.050 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc
Q 013219 33 GWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS 90 (447)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr 90 (447)
|...-.++........+. +|-+....+.+.+++..|..+|+.+.|+++++.-|+
T Consensus 27 g~~~L~yEv~~~r~l~~~----~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~ 80 (521)
T PRK03612 27 AACGLVYELLLGTLASYL----LGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG 80 (521)
T ss_pred HHHHHHHHHHHHHHHHHH----hCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 444445555444333333 355556779999999999999999999887443333
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=81.29 E-value=17 Score=35.50 Aligned_cols=66 Identities=11% Similarity=0.066 Sum_probs=47.3
Q ss_pred hhHhhccccCCcc---hhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHh
Q 013219 363 VSLIYAAEIYPTS---VRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVML 428 (447)
Q Consensus 363 ~~~~~~~ElfP~~---~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 428 (447)
....+.+|.|+.+ .|.++....+..-++|+.+++...+++-++.+....|.+-++..+++.+..+.
T Consensus 53 ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 53 NISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 4567788888865 57778888888999999999988888877666555566656565666554443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.65 E-value=52 Score=32.39 Aligned_cols=64 Identities=11% Similarity=0.223 Sum_probs=42.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhh-----hhCCc
Q 013219 24 CFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVAD-----NYGRS 90 (447)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~D-----r~GRr 90 (447)
..-+.++.+.+..++......+ ..|-+-+.=+.|=++++..+-++. -.-=-+++.++.| |+|||
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~Grr 98 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRR 98 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccc
Confidence 3333444566788888877777 777776655666666665443322 1224588999999 99999
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 447 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 2e-07 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 52/356 (14%), Positives = 99/356 (27%), Gaps = 73/356 (20%)
Query: 96 SWFLEFVPPSNRGMWMVIFSSFWTIGS-VSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 154
W+ RG + +++ +G + + + DW L + + + ++
Sbjct: 146 HWW----SQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVAL 201
Query: 155 FLGFQ----PESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPP 210
F P+S E + K + + LP
Sbjct: 202 FAFAMMRDTPQSCGL----PPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP------- 250
Query: 211 ELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISEL 270
NK + + L R IL W +
Sbjct: 251 -----------NKLL-----WYIAIANVFVYLLRYGILDWSPTY---------------- 278
Query: 271 SSLDTRCRSPLMFSHH--PQDANLYIDEFITSLAEIPGLLLAAILVD---TAGRKLSITI 325
L H ++ F+ A IPG LL + D R +
Sbjct: 279 ----------LKEVKHFALDKSSWAY--FLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 326
Query: 326 MFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGA 383
TL + + + + + + G + ++A E+ P T AG
Sbjct: 327 FMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386
Query: 384 ANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETKGQE 437
G +GG V V + +V++ I+ IL ++++ E + E
Sbjct: 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 442
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.95 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.9 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.88 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.77 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.32 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.21 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.16 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.08 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.0 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.59 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.33 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=381.54 Aligned_cols=388 Identities=19% Similarity=0.226 Sum_probs=275.9
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccC--------CCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNL--------SSTEESLITTSVFAGLVVGAYAWGLVADNYGRSG 91 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~ 91 (447)
++|.+.+.+.+++|.+.++||...++.+.|.++++++. ++.+.|++.|++++|.++|++++|+++||+|||.
T Consensus 7 ~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~ 86 (491)
T 4gc0_A 7 SSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRD 86 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 57889999999999999999999999999988877632 3345789999999999999999999999999991
Q ss_pred ----------------------------------------------------------hhhhhhhhcccCCCCchhHHHH
Q 013219 92 ----------------------------------------------------------HVFLSWFLEFVPPSNRGMWMVI 113 (447)
Q Consensus 92 ----------------------------------------------------------~~~~~~~~E~~p~~~Rg~~~~~ 113 (447)
+..++|++|++|+++||+..++
T Consensus 87 ~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~ 166 (491)
T 4gc0_A 87 SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSF 166 (491)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHh
Confidence 1223577899999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHcC--------CCCchHHHHhhhHHHHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHH
Q 013219 114 FSSFWTIGSVSEAIGAWIIMP--------RLDWRWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQV 185 (447)
Q Consensus 114 ~~~~~~iG~l~~~~~~~~~~~--------~~~WR~~~~~~~i~~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~ 185 (447)
.+.++.+|.+.++.+++.... ...||+++.++.+|+++..+.++++|||||||..|+|.||+++.++|.++.
T Consensus 167 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~ 246 (491)
T 4gc0_A 167 NQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGN 246 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCC
Confidence 999999999998888776432 346999999999999999999999999999999999999999999988754
Q ss_pred cCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 013219 186 NKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVL 265 (447)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 265 (447)
+... ++ .. + .++.. .++++ ......+++ .++..+..+...+.+...++.+..
T Consensus 247 ~~~~-------~~-~~---~------~~~~~--------~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 247 TLAT-------QA-VQ---E------IKHSL--------DHGRK-TGGRLLMFG--VGVIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHHH-------HH-HH---H------HHHHH--------HHHHH-HTTHHHHSC--CTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred chhH-------HH-HH---H------HHHHH--------Hhhhh-hhhHHHHhc--ccHHHHHHHHHHHHHHhhhhHHHh
Confidence 3210 00 00 0 00000 00000 001111111 112222223333333333333333
Q ss_pred HHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh--h--
Q 013219 266 LISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY--Q-- 341 (447)
Q Consensus 266 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~--~-- 341 (447)
+.+.+... .+..........++.++..+++.+++++++||+|||+.++.+..++.+.++.+... .
T Consensus 299 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 299 YAPEVFKT-----------LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHHHHHH-----------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchHHHHh-----------cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence 33332211 11122233444566778889999999999999999999988777766665544321 1
Q ss_pred hhhHHHHHHH-HHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc------hhhHHHHH
Q 013219 342 SNILTTGLLF-GARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC------HQMTAVVL 414 (447)
Q Consensus 342 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~------~~~~~~~~ 414 (447)
........++ ....+..+..++.|.+++|+||+++|+++.|++++++++++++++.++|.+.+.. +...++++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 1122222222 2222334445678999999999999999999999999999999999988765432 22346788
Q ss_pred HHHHHHHHHHHHHhccccccCCCccccccccC
Q 013219 415 LVVVIVTSILSVMLIPFETKGQELSDTVDFTS 446 (447)
Q Consensus 415 ~~~~~~i~~i~~~~~~pEtkg~~l~e~~~~~~ 446 (447)
++++++++.+++++++||||||++||+++.++
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 99999999999999999999999999887765
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-27 Score=234.68 Aligned_cols=361 Identities=12% Similarity=0.129 Sum_probs=238.4
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
..+.+++.+..+.++.+..+++...++...|.+.+++ +++.+.+++.+++.++..++++++|+++||+|||
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 22 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 3566788888888999999999988999999999999 9999999999999999999999999999999999
Q ss_pred --------c----------------------------hhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcC
Q 013219 91 --------G----------------------------HVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMP 134 (447)
Q Consensus 91 --------~----------------------------~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~ 134 (447)
. +...+++.|++|+++|++..++.+.+..+|.++++.++..+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 180 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 180 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1112345699999999999999999999999998888766555
Q ss_pred CCC-chHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 135 RLD-WRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 135 ~~~-WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
..+ ||+++++.+++.++. ++..+++||+|++...+.+ ++ .. .+ + +.+.
T Consensus 181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------~~----~~--~---~~~~ 230 (451)
T 1pw4_A 181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE--------------------YK----ND--Y---PDDY 230 (451)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT--------------------TC----CC----------
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh--------------------hc----cc--c---cccc
Confidence 577 999999988877665 4556788999974211100 00 00 00 0 0000
Q ss_pred cccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 292 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
+. ++ .++...+....+++++++. ........+...+.+++...+.+..... ..+.+....
T Consensus 231 ~~------~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~g~~~~~~ 290 (451)
T 1pw4_A 231 NE------KA-EQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKE----------VKHFALDKS 290 (451)
T ss_dssp ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTT----------BSCCCHHHH
T ss_pred hh------hh-hcccccccchHHHHHcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHH
Confidence 00 00 0000000011334444332 2222333333444455554455533211 011222222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhh--ChhHHHHHHHHHHH-HHHHHHHHhh--hhhHHHHHHHHHHHHHhhhhhhhHhh
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTA--GRKLSITIMFTLSC-LFLLPLVTYQ--SNILTTGLLFGARMCVMGAFTVSLIY 367 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~--GRr~~l~~~~~~~~-~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (447)
.....+..++.+++.++.+++.||+ |||+.+..+..+.. +.++.+.... +........+...++..+..+..+.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 370 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 2334455678889999999999999 99988876665544 3333332221 22222222333333344445566789
Q ss_pred ccccCCcchhhhHhhHHHHHHhH-hHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcc
Q 013219 368 AAEIYPTSVRSTGAGAANAMGRI-GGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIP 430 (447)
Q Consensus 368 ~~ElfP~~~R~~~~g~~~~~~~i-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~ 430 (447)
..|.+|++.|+++.|+.+.+.++ ++.++|.+.+++.+..+....+++.+++.+++.++..+..
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999888776655667777777777666655543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=222.13 Aligned_cols=332 Identities=10% Similarity=-0.000 Sum_probs=219.4
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc---------
Q 013219 20 GKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS--------- 90 (447)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr--------- 90 (447)
.+.+++.++.+.+.++..+++....+...|.+.+++++++.+.+++.+++.++..+++++.|+++||+|||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 34455566666778888999988999999999999999999999999999999999999999999999999
Q ss_pred ----------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHc-CC
Q 013219 91 ----------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIM-PR 135 (447)
Q Consensus 91 ----------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~-~~ 135 (447)
.+...+++.|+.|+++|++..++.+.+..+|.++++.++..+. ..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 180 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1223346779999999999999999999999999988876654 43
Q ss_pred CC-------------------------chHHHHhhhHHHHHHHHH--hhcccCChHHHHhcCChHHHHHHHHHHHHHcCC
Q 013219 136 LD-------------------------WRWLLGLSSIPSFILLAF--LGFQPESPRYLCLKGRTAEAHRALEKIAQVNKT 188 (447)
Q Consensus 136 ~~-------------------------WR~~~~~~~i~~~i~~~~--~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~ 188 (447)
.+ ||+++++.+++.++..+. +...||+++. + +
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~------------------~ 239 (438)
T 3o7q_A 181 VPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N------------------H 239 (438)
T ss_dssp SCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C------------------C
T ss_pred cccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c------------------c
Confidence 33 999998776665554333 2335665430 0 0
Q ss_pred CCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 013219 189 KLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLIS 268 (447)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 268 (447)
+ ++ ++++....++++++++..+...+... .....++....+.+
T Consensus 240 ~--------------~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 240 S--------------DA--------------------KQGSFSASLSRLARIRHWRWAVLAQF---CYVGAQTACWSYLI 282 (438)
T ss_dssp C--------------CS--------------------STTSHHHHHHHHTTCSHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred c--------------cc--------------------cccchhhhHHHHHhChHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 0 00 00011234556666544333333222 22222233322333
Q ss_pred Hh-hcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 013219 269 EL-SSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTT 347 (447)
Q Consensus 269 ~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~ 347 (447)
.. ... ..+.+.........+..++.+++.++.+++.||+|||+.+..+..++.+.++.+....+... .
T Consensus 283 ~~~~~~----------~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 351 (438)
T 3o7q_A 283 RYAVEE----------IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-L 351 (438)
T ss_dssp HHHHHH----------STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH-H
T ss_pred HHhhhc----------cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH-H
Confidence 22 110 00111122223334456778889999999999999999988877766665554444333222 2
Q ss_pred HHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHH
Q 013219 348 GLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTS 422 (447)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~ 422 (447)
...+...++....++..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+++.+..+ ....+.+.+.+.++.
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 2222333344445667888989999988 999999877 778999999999998887765 444455444443333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-23 Score=202.83 Aligned_cols=332 Identities=14% Similarity=0.086 Sum_probs=190.9
Q ss_pred hhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcchhh------------h------------------
Q 013219 46 FVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHVF------------L------------------ 95 (447)
Q Consensus 46 ~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~~~------------~------------------ 95 (447)
+..+.+++++|+++.+.|++.++..++..++++++|+++||+|||..+. .
T Consensus 29 ~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (417)
T 2cfq_A 29 FFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSI 108 (417)
T ss_dssp THHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456779999999999999999999999999999999999991000 0
Q ss_pred --------------hhhhcccCC--CCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcc
Q 013219 96 --------------SWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ 159 (447)
Q Consensus 96 --------------~~~~E~~p~--~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l 159 (447)
....++.++ +.||...+..+.+..+|..+++.++..+.. .+||.++++.+++.++..+..++.
T Consensus 109 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~ 187 (417)
T 2cfq_A 109 VGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFA 187 (417)
T ss_dssp GGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHc
Confidence 001133332 345655666666677777777766555433 579999999888776665555555
Q ss_pred c-CChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCCchhHHHHhhc
Q 013219 160 P-ESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLF 238 (447)
Q Consensus 160 p-ESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 238 (447)
| |+|+ +.+.+ +.++. + . ++....++++++
T Consensus 188 ~~~~~~----~~~~~----------------------------~~~~~--------------~--~--~~~~~~~~~~~~ 217 (417)
T 2cfq_A 188 KTDAPS----SATVA----------------------------NAVGA--------------N--H--SAFSLKLALELF 217 (417)
T ss_dssp CCCCSC----SSCSS----------------------------SSSSS--------------C--C--CCCCHHHHHHHT
T ss_pred Cccccc----ccccc----------------------------ccccc--------------c--c--ccccHHHHHHHh
Confidence 4 4432 00000 00000 0 0 000112344555
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHHHHHHHHHhhhC
Q 013219 239 SSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 318 (447)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~~~~~~l~dr~G 318 (447)
+++......+. .+.....++....+.+...... ................+..+..+++.++.++++||+|
T Consensus 218 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 287 (417)
T 2cfq_A 218 RQPKLWFLSLY---VIGVSCTYDVFDQQFANFFTSF-------FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp TCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHT-------SSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 54332222221 1111122222111122111000 0000000111111223345567788999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHH-HHHHhHhHhHHHH
Q 013219 319 RKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAA-NAMGRIGGMVCPL 397 (447)
Q Consensus 319 Rr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~-~~~~~i~~~~~~~ 397 (447)
||+.+..+..+..+..+.+....+.....+..+...++.....+..+.+.+|.+|++.|+++.++. +..++++++++|.
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~ 367 (417)
T 2cfq_A 288 GKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSV 367 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 999887766665554433333222221111111111122222234578999999999999999996 7788899999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 398 VAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 398 ~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
+.+++.+..+....+.+.+++++++.+..+++.||+|..++
T Consensus 368 l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 368 LAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred hHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 99988776554455667777778887777777788776554
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=206.06 Aligned_cols=352 Identities=12% Similarity=0.017 Sum_probs=183.5
Q ss_pred cccCCCcchhHHHHHHHHHHhHhhhHHHHhhhh-hCCc----------------------------------------ch
Q 013219 54 EWNLSSTEESLITTSVFAGLVVGAYAWGLVADN-YGRS----------------------------------------GH 92 (447)
Q Consensus 54 ~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr-~GRr----------------------------------------~~ 92 (447)
++|++..+.+++.+++.++..+++++.|+++|| +||| .+
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 127 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKP 127 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccc
Confidence 399999999999999999999999999999999 8999 23
Q ss_pred hhhhhhhcccCCCC--chhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHHhhcc-cC----ChHH
Q 013219 93 VFLSWFLEFVPPSN--RGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQ-PE----SPRY 165 (447)
Q Consensus 93 ~~~~~~~E~~p~~~--Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~~~~l-pE----SP~~ 165 (447)
...+++.|++|+++ |+...+..+...++|..+++.++..+..+.+||+.|++.++..++..+..++. |+ .++-
T Consensus 128 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (491)
T 4aps_A 128 NVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLR 207 (491)
T ss_dssp HHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSC
T ss_pred hHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccC
Confidence 34456789999999 67778889999999999998888777666899999999877665544433222 21 1100
Q ss_pred HHhcCChHHHHHHHHH--------------HHHHcCCCCCCCccccccccCCCCCCCCCcc-cccccCCCCCCCcCCCch
Q 013219 166 LCLKGRTAEAHRALEK--------------IAQVNKTKLPNGKLVARRSTLPTGERAPPEL-VHLLSSNGGNKTTEGKSG 230 (447)
Q Consensus 166 L~~~g~~~~a~~~l~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 230 (447)
-..+.+.++.++..++ +...+..+ .++.... ............ ....++ . .
T Consensus 208 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~---~-~------ 273 (491)
T 4aps_A 208 PTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS--LPAYINL--LTIVAIAIPVFYFAWMISS---V-K------ 273 (491)
T ss_dssp CSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC--TTHHHHH--HHHHHHHHHHHHHHHHC--------------
T ss_pred CCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccchhh--hhHHHHHHHHHHHHHHhhc---c-c------
Confidence 0011233344443332 11111100 0000000 000000000000 000000 0 0
Q ss_pred hHHHHhhcchhhhhHHHHHHHH----HHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhH
Q 013219 231 LSLFLMLFSSKLARTTILLWLL----LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPG 306 (447)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g 306 (447)
.....+++. ......+.. +............+.....+ .+...... ...+..+..+++
T Consensus 274 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~~~~~~~~~~ 335 (491)
T 4aps_A 274 ---VTSTEHLRV-VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVD------------SSWFPVSW--FQSLNPLFIMLY 335 (491)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCC------------CSSSCSGG--GTTHHHHHHHHH
T ss_pred ---ccHHHHHHH-HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhc------------cCccCHHH--HhccchHHHHHH
Confidence 000000111 111111111 11111111111111111110 00011111 112334555667
Q ss_pred HHHHHHHHhhhChhHHHH-----HHHHHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHhhhhhhhHhhccccC
Q 013219 307 LLLAAILVDTAGRKLSIT-----IMFTLSCLFLLPLVTYQ---------SNILTTGLLFGARMCVMGAFTVSLIYAAEIY 372 (447)
Q Consensus 307 ~~~~~~l~dr~GRr~~l~-----~~~~~~~~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Elf 372 (447)
..+.+++.||+|||+... .+...+.+.++.+.... +........+...+......+..+.+..|.+
T Consensus 336 ~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 415 (491)
T 4aps_A 336 TPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLA 415 (491)
T ss_dssp HHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 788899999999986543 33333333332222211 1111122222222222223456788999999
Q ss_pred CcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCc
Q 013219 373 PTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQEL 438 (447)
Q Consensus 373 P~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l 438 (447)
|++.|+++.|+.+....+++.++|.+.+.+.+. +....+..++.+++++.++.+++.++++++..
T Consensus 416 p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (491)
T 4aps_A 416 PKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ 480 (491)
T ss_dssp TTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988765443 44456777777888887787887778776543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1e-22 Score=198.75 Aligned_cols=137 Identities=10% Similarity=0.041 Sum_probs=117.0
Q ss_pred HHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc-----------------
Q 013219 28 AYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------- 90 (447)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------- 90 (447)
+++.++.+...++....+...|.+.+++++++.+.+++.++..++..+++++.|+++||+|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 344566677888888888888999999999999999999999999999999999999999999
Q ss_pred -----------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhH
Q 013219 91 -----------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSI 147 (447)
Q Consensus 91 -----------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i 147 (447)
.+....++.|+.|+++|++..+..+.+..+|..+++.++..+....+||..+.+.++
T Consensus 83 ~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (375)
T 2gfp_A 83 VTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLV 162 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHH
Confidence 122344677999999999999999999999999999888877666789999999888
Q ss_pred HHHHHHH-HhhcccCChH
Q 013219 148 PSFILLA-FLGFQPESPR 164 (447)
Q Consensus 148 ~~~i~~~-~~~~lpESP~ 164 (447)
..++..+ ..+++||+|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 163 LCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHCcccCC
Confidence 8777655 5667898875
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=175.91 Aligned_cols=112 Identities=15% Similarity=0.205 Sum_probs=90.3
Q ss_pred hhccccccccc------CCCcchhHHHHHHHHHHhHhhhHHHHhhhhh-CCc----------------------------
Q 013219 46 FVGPTVKSEWN------LSSTEESLITTSVFAGLVVGAYAWGLVADNY-GRS---------------------------- 90 (447)
Q Consensus 46 ~~~~~~~~~~~------l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~-GRr---------------------------- 90 (447)
+..+.+.++++ ++..+.+++.+++.++..+++++.|+++||+ |||
T Consensus 34 ~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (524)
T 2xut_A 34 ILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFY 113 (524)
T ss_dssp HHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred HHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 33444567788 9999999999999999999999999999999 999
Q ss_pred -------------chhhhhhhhcccCCCCchhHHHH---HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHH
Q 013219 91 -------------GHVFLSWFLEFVPPSNRGMWMVI---FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLA 154 (447)
Q Consensus 91 -------------~~~~~~~~~E~~p~~~Rg~~~~~---~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~ 154 (447)
.+...+++.|++|+++||+..+. .+.+.++|..+++.++..+....+||.++++.++..++..+
T Consensus 114 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 193 (524)
T 2xut_A 114 TGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATV 193 (524)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 12223456799999999877666 88899999998888776666668999999998877666554
Q ss_pred Hhh
Q 013219 155 FLG 157 (447)
Q Consensus 155 ~~~ 157 (447)
..+
T Consensus 194 ~~~ 196 (524)
T 2xut_A 194 FFW 196 (524)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-11 Score=116.49 Aligned_cols=140 Identities=14% Similarity=0.021 Sum_probs=102.1
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT----YQSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
..+..+...++.++.|+++||+|||+.+..+..+.++..+.... ..+.....+..+...++.....+....+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 147 (451)
T 1pw4_A 68 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 147 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHH
Confidence 34556777889999999999999999998888777666655554 33322222222233333333456678899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHHhccccccC
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANCH-QMTAVVLLVVVIVTSILSVMLIPFETKG 435 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~i~~~~~~pEtkg 435 (447)
+|.+.|+++.++.+....++..++|.+.+++.+..+ +...+++.++++++..++..+..||++.
T Consensus 148 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 148 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 999999999999999999999999999887766655 5566777777777766666666777644
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.4e-09 Score=107.42 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=80.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccc
Q 013219 294 IDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPL---VTYQSNILTTGLLFGARMCVMGAFTVSLIYAAE 370 (447)
Q Consensus 294 ~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 370 (447)
....+..+...++.++.|+++||+|||+.+..+..+.++..+.. ....+.....+..+...++.....+....+.+|
T Consensus 65 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~ 144 (438)
T 3o7q_A 65 LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV 144 (438)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Confidence 33445566778889999999999999999988887766665544 322232222222223333333444567889999
Q ss_pred cCCcchhhhHhhHHHHHHhHhHhHHHHHHHHHH
Q 013219 371 IYPTSVRSTGAGAANAMGRIGGMVCPLVAVALV 403 (447)
Q Consensus 371 lfP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~ 403 (447)
.+|.+.|+++.++.+....++..++|.+.+.+.
T Consensus 145 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 145 LGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887766
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-09 Score=107.63 Aligned_cols=138 Identities=12% Similarity=-0.017 Sum_probs=96.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHhh-hChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 295 DEFITSLAEIPGLLLAAILVDT-AGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr-~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
...+..+...++.++.|+++|| +|||+.+..+..+..+..+......+.....+..+...++.....+....+.+|.+|
T Consensus 59 ~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 138 (491)
T 4aps_A 59 IMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYD 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcC
Confidence 3445567778899999999999 899999988887766666555544333322222223333333345667889999999
Q ss_pred cch--hhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhcccc
Q 013219 374 TSV--RSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFE 432 (447)
Q Consensus 374 ~~~--R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pE 432 (447)
.+. |+++.++.+....++..++|.+.+.+.+..++...+++.++..+++.+...+..|+
T Consensus 139 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 199 (491)
T 4aps_A 139 EHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKK 199 (491)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 988 77788888899999999999999887776666666666666666665555544333
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.3e-09 Score=105.54 Aligned_cols=143 Identities=15% Similarity=0.039 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCc
Q 013219 295 DEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPT 374 (447)
Q Consensus 295 ~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~ 374 (447)
...+..+...++.++.|+++||+|||+.+..+.....+..+......+.....+..+...++.....+....+.+|.+|.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 119 (375)
T 2gfp_A 40 VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER 119 (375)
T ss_dssp HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH
Confidence 34455677788899999999999999998887776666555444433322222222222233333445678899999999
Q ss_pred chhhhHhhHHHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCC
Q 013219 375 SVRSTGAGAANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQE 437 (447)
Q Consensus 375 ~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~ 437 (447)
+.|+++.++.+....++..++|.+.+++.+..++...+++.+...++..+...+..||++.++
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 120 TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999999998887766555555666667666666665666678876543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=103.32 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=91.9
Q ss_pred HHHHHhhhhhHHHHHHHHHhhh-ChhHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhHhhccccCC
Q 013219 296 EFITSLAEIPGLLLAAILVDTA-GRKLSITIMFTLSCLFLLPLVTYQ-SNILTTGLLFGARMCVMGAFTVSLIYAAEIYP 373 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~-GRr~~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP 373 (447)
..+..+...++.++.|+++||+ |||+.+..+.++..+..+...... +.....+..+...++.....+....+.+|.+|
T Consensus 60 ~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 139 (524)
T 2xut_A 60 FHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFD 139 (524)
T ss_dssp HHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcC
Confidence 3445667788899999999999 999998887776666555544443 33222222222223333344567889999999
Q ss_pred cchhhhHhhH---HHHHHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccc
Q 013219 374 TSVRSTGAGA---ANAMGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPF 431 (447)
Q Consensus 374 ~~~R~~~~g~---~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~p 431 (447)
.+.|+++.+. .+....+++.++|.+.+.+.+..++...+++.+++.+++.+...+..|
T Consensus 140 ~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 200 (524)
T 2xut_A 140 QSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRK 200 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999876665 888888999999988877766555555666666666665555444333
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.1e-06 Score=87.88 Aligned_cols=102 Identities=18% Similarity=0.022 Sum_probs=69.8
Q ss_pred HHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHH------------------hhhhhHHHHHHHHHHHHHhhh
Q 013219 299 TSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVT------------------YQSNILTTGLLFGARMCVMGA 360 (447)
Q Consensus 299 ~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~~~ 360 (447)
..++.++|.++.|+++||+|||+.++++.++..+..+..++ ..+.....+.=+...++..+.
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999998887766655444332 111111122222333333444
Q ss_pred hhhhHhhccccCCcchhhhHhhHHHHHHhHhHhHHHHHHH
Q 013219 361 FTVSLIYAAEIYPTSVRSTGAGAANAMGRIGGMVCPLVAV 400 (447)
Q Consensus 361 ~~~~~~~~~ElfP~~~R~~~~g~~~~~~~i~~~~~~~~~~ 400 (447)
.+....+.+|..|.+.|++..++......++...++.+..
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 5677899999999999999999888877777666665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.9e-07 Score=88.90 Aligned_cols=106 Identities=7% Similarity=-0.057 Sum_probs=78.4
Q ss_pred CcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcc----------------------------------------hhhhhhh
Q 013219 59 STEESLITTSVFAGLVVGAYAWGLVADNYGRSG----------------------------------------HVFLSWF 98 (447)
Q Consensus 59 ~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~----------------------------------------~~~~~~~ 98 (447)
..+.++..++..++..+|.++.|+++||+|||. +....+.
T Consensus 258 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (417)
T 2cfq_A 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577788888889999999999999999990 1112356
Q ss_pred hcccCCCCchhHHHH-HHHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHH-hhcccCChH
Q 013219 99 LEFVPPSNRGMWMVI-FSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQPESPR 164 (447)
Q Consensus 99 ~E~~p~~~Rg~~~~~-~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lpESP~ 164 (447)
.|..|++.||+..+. .+....+|..+++.+...+..+.+|+..|.+.++..++..+. ....||.++
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 799999999998887 477778888877776655544567888888877777665544 445566443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 447 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 2e-11 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 63.5 bits (153), Expect = 2e-11
Identities = 47/423 (11%), Positives = 106/423 (25%), Gaps = 6/423 (1%)
Query: 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAY 78
+ + + + G+ A + + P + E S + + + +
Sbjct: 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKF 77
Query: 79 AWGLVADNYGRSGHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDW 138
G V+D + L ++ +S + V + W
Sbjct: 78 IMGSVSDRSNPRVFLPAGLIL-AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPP 136
Query: 139 RWLLGLSSIPSFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVAR 198
+ + + +P +
Sbjct: 137 CGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 196
Query: 199 RSTLPTGERAPPELVHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSF 258
R P+ L L + ++ +L LL+ +
Sbjct: 197 ALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAI 256
Query: 259 AYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAG 318
A V LL + + + + Y + + V
Sbjct: 257 ANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN 316
Query: 319 RKLSITIMFTLS--CLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSV 376
R + TL + + + + + + G + ++A E+ P
Sbjct: 317 RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA 376
Query: 377 RSTGAGAANAMGRIGGMVCPLVAVALVANCH--QMTAVVLLVVVIVTSILSVMLIPFETK 434
T AG G +GG V V + +V++ I+ IL ++++ E +
Sbjct: 377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 436
Query: 435 GQE 437
E
Sbjct: 437 RHE 439
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 44.0 bits (102), Expect = 2e-05
Identities = 35/391 (8%), Positives = 98/391 (25%), Gaps = 16/391 (4%)
Query: 42 MILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHVFLSWFLEF 101
F + ++S ++ +I ++ ++ +GL++D G ++
Sbjct: 25 AYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITG-- 82
Query: 102 VPPSNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAFLGFQPE 161
M++ + + I + I++ + LG + +
Sbjct: 83 ---------MLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS 133
Query: 162 SPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGG 221
A + L +
Sbjct: 134 RRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS 193
Query: 222 NKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPL 281
+ T G + L L + + +
Sbjct: 194 SATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF--- 250
Query: 282 MFSHHPQDANLYIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQ 341
+ + L + A ++++ G K ++ + T+ + ++
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310
Query: 342 SNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANAMGR-IGGMVCPLVAV 400
S + L V Y + +T + + + ++A
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370
Query: 401 ALVANC-HQMTAVVLLVVVIVTSILSVMLIP 430
+ + Q +VL +V + +++SV +
Sbjct: 371 NMYESIGFQGAYLVLGLVALGFTLISVFTLS 401
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 447 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.19 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.52 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.5e-29 Score=245.68 Aligned_cols=375 Identities=12% Similarity=0.094 Sum_probs=234.1
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc--------
Q 013219 19 FGKYQCFVLAYAGLGWVAEAMEIMILSFVGPTVKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS-------- 90 (447)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr-------- 90 (447)
..+++|.+++.+.++++..++|+..++.+.|.++ |+++|.+|.|++.+++.+++.++++++|+++||+|||
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~ 97 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 3578899999999999999999999999999885 6899999999999999999999999999999999999
Q ss_pred ------------------------------------chhhhhhhhcccCCCCchhHHHHHHHHHhhhhHHHHHHHHHH-c
Q 013219 91 ------------------------------------GHVFLSWFLEFVPPSNRGMWMVIFSSFWTIGSVSEAIGAWII-M 133 (447)
Q Consensus 91 ------------------------------------~~~~~~~~~E~~p~~~Rg~~~~~~~~~~~iG~l~~~~~~~~~-~ 133 (447)
.+....++.|+.|+++||+..++.+.+..+|..+++.++... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~ 177 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA 177 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence 122234567999999999999999999999998887665543 3
Q ss_pred CCCCchHHHHhhhHHHHHH-HHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcc
Q 013219 134 PRLDWRWLLGLSSIPSFIL-LAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPEL 212 (447)
Q Consensus 134 ~~~~WR~~~~~~~i~~~i~-~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (447)
...+||..+++.+++.++. ++...+++|+|+....... ++ .+ ++.. +
T Consensus 178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------~~-~~~~---~- 225 (447)
T d1pw4a_ 178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE--------------------------YK-NDYP---D- 225 (447)
T ss_dssp HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT--------------------------TC-CC-------
T ss_pred hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-hh--------------------------hh-hhcc---c-
Confidence 3468999998887776665 4555677887763211000 00 00 0000 0
Q ss_pred cccccCCCCCCCcCCCchhHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhh
Q 013219 213 VHLLSSNGGNKTTEGKSGLSLFLMLFSSKLARTTILLWLLLFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANL 292 (447)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
..+ ++.+++...+....+..++++. ........+......++...+.+..... ..+.+....
T Consensus 226 --~~~---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 287 (447)
T d1pw4a_ 226 --DYN---EKAEQELTAKQIFMQYVLPNKL---LWYIAIANVFVYLLRYGILDWSPTYLKE----------VKHFALDKS 287 (447)
T ss_dssp ---------------CCTHHHHHHTSSCHH---HHHHHHHHHHHHHHHHHHHHHHHHHBTT----------BSCCCHHHH
T ss_pred --chh---hccccccchhhHHHHHHHcCch---HHHHHHHhhhhhhhhhcchhhhhhhccc----------ccccccchh
Confidence 000 0000011111122333333322 2222222333334444444444432210 111222222
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHH-HHHHHH--h--hhhhHHHHHHHHHHHHHhhhhhhhHhh
Q 013219 293 YIDEFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLF-LLPLVT--Y--QSNILTTGLLFGARMCVMGAFTVSLIY 367 (447)
Q Consensus 293 ~~~~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~-~~~l~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (447)
.....+..+..+++.++++++.||++||............. ...... . .+.....+..+...+...+..+..+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 367 (447)
T d1pw4a_ 288 SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLH 367 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567778899999999999999875443332222222 111111 1 122222223333333344555677889
Q ss_pred ccccCCcchhhhHhhHHHHHHhHh-HhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCcccccccc
Q 013219 368 AAEIYPTSVRSTGAGAANAMGRIG-GMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSDTVDFT 445 (447)
Q Consensus 368 ~~ElfP~~~R~~~~g~~~~~~~i~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e~~~~~ 445 (447)
..|.+|++.|+++.|+.+.+++++ .+++|.+.+++.+..+....+++++++.+++.++.+++.++ +.|..||..+|.
T Consensus 368 ~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~e~ 445 (447)
T d1pw4a_ 368 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG-EKRRHEQLLQEL 445 (447)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHGGGGGS
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHhC
Confidence 999999999999999999999985 45678888888777766666666666666666665555433 333345555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=3.1e-22 Score=193.17 Aligned_cols=342 Identities=11% Similarity=0.026 Sum_probs=196.4
Q ss_pred HHHHHHHHHhhccc-ccccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCcchhhh--------------------
Q 013219 37 EAMEIMILSFVGPT-VKSEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRSGHVFL-------------------- 95 (447)
Q Consensus 37 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr~~~~~-------------------- 95 (447)
............|. +++++|+|+.+.|++.++..++..++++++|+++||+|||..+..
T Consensus 19 ~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~ 98 (417)
T d1pv7a_ 19 YFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL 98 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33333333333443 667789999999999999999999999999999999999911000
Q ss_pred ------------------------hhhhcccCC--CCchhHHHHHHHHHhhhhHHHHHHHHHHcCCCCchHHHHh-hhHH
Q 013219 96 ------------------------SWFLEFVPP--SNRGMWMVIFSSFWTIGSVSEAIGAWIIMPRLDWRWLLGL-SSIP 148 (447)
Q Consensus 96 ------------------------~~~~E~~p~--~~Rg~~~~~~~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~-~~i~ 148 (447)
....+..++ +.+....+........|..+++.++..+.. .+|+..+.. ....
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~ 177 (417)
T d1pv7a_ 99 LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCA 177 (417)
T ss_dssp HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc-ccccccccchhhHH
Confidence 000111111 223344455556666666666655554433 355555544 4555
Q ss_pred HHHHHHHhhcccCChHHHHhcCChHHHHHHHHHHHHHcCCCCCCCccccccccCCCCCCCCCcccccccCCCCCCCcCCC
Q 013219 149 SFILLAFLGFQPESPRYLCLKGRTAEAHRALEKIAQVNKTKLPNGKLVARRSTLPTGERAPPELVHLLSSNGGNKTTEGK 228 (447)
Q Consensus 149 ~~i~~~~~~~lpESP~~L~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (447)
.+...+..+.+||+|+.. .+.++.+ .. + . +
T Consensus 178 ~~~~~~~~~~~~~~~~~~---~~~~~~~----------~~----------------~------------------~---~ 207 (417)
T d1pv7a_ 178 LILAVLLFFAKTDAPSSA---TVANAVG----------AN----------------H------------------S---A 207 (417)
T ss_dssp HHHHHHHHSSCCCSCSSS---CSSHHHH----------SC----------------C------------------C---C
T ss_pred HHHHHHHHHHhcccccch---hhhhhhh----------hh----------------c------------------c---c
Confidence 555666677888887632 1111100 00 0 0 0
Q ss_pred chhHHHHhhcchhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHhhcccccccCCCcccCCCCChhhHHHHHHHHhhhhhHH
Q 013219 229 SGLSLFLMLFSSKLARTTILLWLL-LFGNSFAYYAVVLLISELSSLDTRCRSPLMFSHHPQDANLYIDEFITSLAEIPGL 307 (447)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~y~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~g~ 307 (447)
.........++.+..+........ .................... .................+...++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 276 (417)
T d1pv7a_ 208 FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFA-----------TGEQGTRVFGYVTTMGELLNASIM 276 (417)
T ss_dssp CCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS-----------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhhhHHHHHHHHhhhcccccccccccc-----------ccccchhhhcccccccccccccch
Confidence 001112222222222222221111 11111111111111110000 000000111222344456677888
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhHhhccccCCcchhhhHhhHHHH-
Q 013219 308 LLAAILVDTAGRKLSITIMFTLSCLFLLPLVTYQSNILTTGLLFGARMCVMGAFTVSLIYAAEIYPTSVRSTGAGAANA- 386 (447)
Q Consensus 308 ~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ElfP~~~R~~~~g~~~~- 386 (447)
.+.+++.||.|||+.+..+..++.+..+.+....+.+...+..+...++.....+....+..|.+|++.|+++.|+...
T Consensus 277 ~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (417)
T d1pv7a_ 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCF 356 (417)
T ss_dssp TTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTT
T ss_pred hhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHH
Confidence 8999999999999999888887777666555544443333333333333334456678899999999999999998755
Q ss_pred HHhHhHhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHhccccccCCCccc
Q 013219 387 MGRIGGMVCPLVAVALVANCHQMTAVVLLVVVIVTSILSVMLIPFETKGQELSD 440 (447)
Q Consensus 387 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~i~~~~~~pEtkg~~l~e 440 (447)
...+++.++|.+.+++.+..+....+++.+++.+++.++..+..++++..++++
T Consensus 357 ~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 357 FKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 456899999999998888777667788888888887777777777777666644
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=5.5e-10 Score=107.93 Aligned_cols=138 Identities=14% Similarity=0.025 Sum_probs=93.8
Q ss_pred HHHHHhhhhhHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHhhhhhhhHhhcccc
Q 013219 296 EFITSLAEIPGLLLAAILVDTAGRKLSITIMFTLSCLFLLPLVTY----QSNILTTGLLFGARMCVMGAFTVSLIYAAEI 371 (447)
Q Consensus 296 ~~i~~~~~i~g~~~~~~l~dr~GRr~~l~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~El 371 (447)
..+..+...++.++.|+++||+|||+.+..+.++.++..+..... .+.....+.-+...++....++....+.+|.
T Consensus 65 ~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~ 144 (447)
T d1pw4a_ 65 LSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHW 144 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 344567778899999999999999999988887766655544332 1111222222222233333445678899999
Q ss_pred CCcchhhhHhhHHHHHHhHhHhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHhccccc
Q 013219 372 YPTSVRSTGAGAANAMGRIGGMVCPLVAVALVANC-HQMTAVVLLVVVIVTSILSVMLIPFET 433 (447)
Q Consensus 372 fP~~~R~~~~g~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~i~~~~~~pEt 433 (447)
+|.+.|+++.++.+....+++.++|.+...+.... ++...+++.+.+.++..++.+++++|+
T Consensus 145 ~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 145 WSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence 99999999999999999999999988776555433 233445666666666556666665554
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=4.7e-08 Score=92.11 Aligned_cols=108 Identities=6% Similarity=-0.096 Sum_probs=81.7
Q ss_pred ccccCCCcchhHHHHHHHHHHhHhhhHHHHhhhhhCCc----------------------------------------ch
Q 013219 53 SEWNLSSTEESLITTSVFAGLVVGAYAWGLVADNYGRS----------------------------------------GH 92 (447)
Q Consensus 53 ~~~~l~~~~~~~i~s~~~~G~~iG~l~~G~l~Dr~GRr----------------------------------------~~ 92 (447)
.+.+.+....+...+...++..++..+.+++.||+||| .+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 331 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLV 331 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 33444556677888888899999999999999999999 12
Q ss_pred hhhhhhhcccCCCCchhHHHHH-HHHHhhhhHHHHHHHHHHcCCCCchHHHHhhhHHHHHHHHH-hhccc
Q 013219 93 VFLSWFLEFVPPSNRGMWMVIF-SSFWTIGSVSEAIGAWIIMPRLDWRWLLGLSSIPSFILLAF-LGFQP 160 (447)
Q Consensus 93 ~~~~~~~E~~p~~~Rg~~~~~~-~~~~~iG~l~~~~~~~~~~~~~~WR~~~~~~~i~~~i~~~~-~~~lp 160 (447)
...+++.|.+|++.||+..+.. +....+|..+++.++..+.++.||+..+++.++..++..+. .+.++
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 332 GCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2334667999999999999864 56777888888877766666679999998877766665443 44443
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